Query 026286
Match_columns 240
No_of_seqs 315 out of 1602
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.6 1.7E-15 3.6E-20 133.4 5.3 142 3-144 143-333 (483)
2 KOG2120 SCF ubiquitin ligase, 99.5 1.4E-14 3.1E-19 123.1 5.3 152 3-163 190-345 (419)
3 KOG4341 F-box protein containi 99.5 4E-14 8.6E-19 124.8 7.4 158 3-166 299-462 (483)
4 KOG1947 Leucine rich repeat pr 99.4 2.4E-13 5.1E-18 124.4 7.4 144 2-145 247-415 (482)
5 KOG2120 SCF ubiquitin ligase, 99.4 3.9E-13 8.6E-18 114.4 4.6 152 3-163 215-370 (419)
6 KOG1947 Leucine rich repeat pr 99.4 1.5E-12 3.4E-17 119.0 8.5 148 10-165 175-330 (482)
7 cd00116 LRR_RI Leucine-rich re 99.3 1.4E-11 2.9E-16 107.3 10.4 133 3-143 113-262 (319)
8 KOG1909 Ran GTPase-activating 99.3 7.9E-12 1.7E-16 108.2 5.8 120 16-143 178-310 (382)
9 cd00116 LRR_RI Leucine-rich re 99.2 2.2E-10 4.8E-15 99.6 12.8 134 3-144 142-291 (319)
10 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-11 2.8E-16 99.3 1.3 142 10-165 4-149 (175)
11 KOG1909 Ran GTPase-activating 99.0 4.6E-10 9.9E-15 97.4 6.9 67 19-86 116-197 (382)
12 KOG3207 Beta-tubulin folding c 98.9 7.8E-10 1.7E-14 98.5 4.0 124 14-144 109-235 (505)
13 KOG3207 Beta-tubulin folding c 98.9 6.7E-10 1.5E-14 98.9 3.4 151 5-165 128-280 (505)
14 PF14580 LRR_9: Leucine-rich r 98.8 7.1E-10 1.5E-14 89.2 -0.2 126 3-142 24-151 (175)
15 PLN00113 leucine-rich repeat r 98.6 6.7E-08 1.4E-12 96.5 6.0 38 21-58 91-128 (968)
16 KOG0618 Serine/threonine phosp 98.6 1.9E-08 4.1E-13 96.7 1.2 129 4-148 365-493 (1081)
17 KOG3665 ZYG-1-like serine/thre 98.5 2.8E-07 6.2E-12 88.7 8.2 140 11-164 136-283 (699)
18 KOG2739 Leucine-rich acidic nu 98.5 1.5E-08 3.4E-13 84.9 -0.7 133 24-166 19-153 (260)
19 PLN00113 leucine-rich repeat r 98.5 1.6E-07 3.5E-12 93.8 6.0 61 21-84 162-222 (968)
20 KOG4194 Membrane glycoprotein 98.3 9.1E-08 2E-12 88.4 -0.6 121 21-150 315-435 (873)
21 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-05 2.3E-10 68.8 10.8 117 21-142 90-225 (388)
22 KOG4194 Membrane glycoprotein 98.2 7.8E-07 1.7E-11 82.4 2.5 57 107-165 198-254 (873)
23 KOG3665 ZYG-1-like serine/thre 98.2 2.3E-06 5.1E-11 82.4 5.8 67 47-120 121-187 (699)
24 KOG3864 Uncharacterized conser 98.2 2E-06 4.4E-11 69.9 4.1 74 8-83 111-185 (221)
25 KOG0444 Cytoskeletal regulator 98.0 7.8E-07 1.7E-11 83.1 -1.3 119 22-148 244-379 (1255)
26 KOG3864 Uncharacterized conser 98.0 6.7E-06 1.4E-10 66.9 4.0 105 50-163 103-211 (221)
27 KOG2739 Leucine-rich acidic nu 98.0 1E-06 2.3E-11 74.0 -1.3 130 5-144 25-156 (260)
28 KOG1259 Nischarin, modulator o 97.9 6.1E-06 1.3E-10 71.2 3.2 112 22-149 306-417 (490)
29 KOG2982 Uncharacterized conser 97.9 6.1E-06 1.3E-10 71.0 2.0 108 25-141 47-156 (418)
30 KOG0444 Cytoskeletal regulator 97.9 6.1E-07 1.3E-11 83.8 -4.5 123 14-149 164-286 (1255)
31 PLN03210 Resistant to P. syrin 97.8 1.1E-05 2.4E-10 82.3 2.6 107 22-145 777-883 (1153)
32 KOG2982 Uncharacterized conser 97.8 1.8E-05 3.9E-10 68.2 3.4 71 14-86 62-133 (418)
33 KOG0618 Serine/threonine phosp 97.7 5.2E-06 1.1E-10 80.3 -1.4 122 22-163 358-483 (1081)
34 KOG2123 Uncharacterized conser 97.6 1.4E-05 3.1E-10 68.2 0.5 113 11-137 5-123 (388)
35 PLN03210 Resistant to P. syrin 97.6 3.7E-05 8.1E-10 78.5 3.5 108 19-145 798-907 (1153)
36 PLN03150 hypothetical protein; 97.6 9.2E-05 2E-09 71.0 4.9 108 24-142 419-526 (623)
37 COG5238 RNA1 Ran GTPase-activa 97.5 0.00079 1.7E-08 57.6 9.7 138 19-163 116-279 (388)
38 KOG1859 Leucine-rich repeat pr 97.5 9.3E-06 2E-10 77.1 -2.5 103 24-143 188-291 (1096)
39 KOG1259 Nischarin, modulator o 97.4 4E-05 8.7E-10 66.2 0.8 106 21-144 282-387 (490)
40 smart00367 LRR_CC Leucine-rich 97.4 0.00018 3.9E-09 39.1 2.7 25 47-71 1-25 (26)
41 KOG2123 Uncharacterized conser 97.3 8.1E-05 1.8E-09 63.7 1.3 116 35-164 4-125 (388)
42 PF13855 LRR_8: Leucine rich r 97.2 2E-05 4.4E-10 51.9 -2.9 35 48-84 1-35 (61)
43 PF13855 LRR_8: Leucine rich r 97.1 3.8E-05 8.2E-10 50.6 -2.1 38 104-142 23-60 (61)
44 PF12799 LRR_4: Leucine Rich r 97.1 0.00049 1.1E-08 42.4 2.7 36 106-143 1-36 (44)
45 KOG4237 Extracellular matrix p 97.1 0.00014 3E-09 64.9 0.1 62 103-165 271-355 (498)
46 smart00367 LRR_CC Leucine-rich 97.0 0.00068 1.5E-08 36.7 2.6 24 105-128 1-25 (26)
47 PLN03150 hypothetical protein; 97.0 0.0011 2.4E-08 63.6 5.2 87 21-117 440-526 (623)
48 KOG1644 U2-associated snRNP A' 96.9 0.00027 5.8E-09 57.8 0.7 87 45-140 61-149 (233)
49 PF12799 LRR_4: Leucine Rich r 96.9 0.00079 1.7E-08 41.5 2.5 37 23-62 1-37 (44)
50 KOG1644 U2-associated snRNP A' 96.9 0.00031 6.8E-09 57.4 0.5 107 46-164 40-148 (233)
51 KOG0617 Ras suppressor protein 96.8 2.1E-05 4.6E-10 62.9 -6.6 114 22-149 32-168 (264)
52 PRK15387 E3 ubiquitin-protein 96.7 0.0015 3.2E-08 64.0 3.5 13 24-36 223-235 (788)
53 KOG4308 LRR-containing protein 96.6 0.00038 8.2E-09 64.6 -0.6 52 93-144 245-303 (478)
54 PRK15387 E3 ubiquitin-protein 96.6 0.00096 2.1E-08 65.3 1.9 36 107-144 423-458 (788)
55 KOG1859 Leucine-rich repeat pr 96.6 0.00031 6.6E-09 67.1 -1.7 85 44-144 183-267 (1096)
56 KOG4658 Apoptotic ATPase [Sign 96.5 0.002 4.3E-08 64.1 3.6 110 19-140 541-651 (889)
57 PF13516 LRR_6: Leucine Rich r 96.4 0.0025 5.4E-08 33.7 2.1 23 105-127 1-23 (24)
58 KOG0472 Leucine-rich repeat pr 96.4 0.00074 1.6E-08 60.6 -0.1 108 29-144 418-541 (565)
59 KOG4308 LRR-containing protein 96.4 0.00065 1.4E-08 63.0 -0.6 160 3-163 92-297 (478)
60 KOG3763 mRNA export factor TAP 96.3 0.0049 1.1E-07 57.2 4.5 45 14-58 209-254 (585)
61 KOG0531 Protein phosphatase 1, 96.2 0.0017 3.6E-08 59.2 0.9 111 21-148 93-203 (414)
62 PF13516 LRR_6: Leucine Rich r 96.2 0.0034 7.5E-08 33.1 1.7 22 23-44 2-23 (24)
63 smart00368 LRR_RI Leucine rich 95.8 0.011 2.3E-07 32.6 2.7 25 106-130 2-26 (28)
64 COG4886 Leucine-rich repeat (L 95.6 0.0058 1.3E-07 55.0 1.6 127 10-144 147-290 (394)
65 COG4886 Leucine-rich repeat (L 95.6 0.0062 1.3E-07 54.8 1.8 104 23-142 116-220 (394)
66 PRK15370 E3 ubiquitin-protein 95.5 0.018 3.9E-07 56.5 4.6 55 23-86 199-253 (754)
67 KOG4658 Apoptotic ATPase [Sign 95.2 0.021 4.5E-07 57.0 4.1 110 19-141 567-678 (889)
68 KOG0531 Protein phosphatase 1, 95.2 0.0021 4.6E-08 58.6 -2.7 110 21-148 70-179 (414)
69 smart00368 LRR_RI Leucine rich 95.1 0.031 6.6E-07 30.8 3.0 24 23-46 2-25 (28)
70 KOG4237 Extracellular matrix p 94.8 0.013 2.8E-07 52.7 1.4 93 39-142 265-357 (498)
71 KOG0617 Ras suppressor protein 94.4 0.002 4.3E-08 51.8 -4.2 85 46-144 31-115 (264)
72 KOG4579 Leucine-rich repeat (L 94.1 0.014 3.1E-07 45.2 0.1 110 24-147 28-139 (177)
73 KOG4579 Leucine-rich repeat (L 94.0 0.028 6E-07 43.7 1.3 96 38-144 14-113 (177)
74 PRK15370 E3 ubiquitin-protein 93.9 0.084 1.8E-06 51.9 4.8 103 22-144 324-428 (754)
75 KOG3763 mRNA export factor TAP 93.8 0.12 2.5E-06 48.4 5.3 94 65-165 209-310 (585)
76 PRK15386 type III secretion pr 93.6 0.049 1.1E-06 49.6 2.5 34 22-61 51-85 (426)
77 KOG3735 Tropomodulin and leiom 93.1 0.16 3.6E-06 44.6 4.8 89 37-132 187-281 (353)
78 KOG0472 Leucine-rich repeat pr 92.0 0.049 1.1E-06 49.2 0.3 90 18-119 430-541 (565)
79 KOG3735 Tropomodulin and leiom 91.9 0.27 5.7E-06 43.3 4.6 98 10-115 185-292 (353)
80 PF13504 LRR_7: Leucine rich r 91.0 0.17 3.8E-06 24.3 1.5 13 106-118 1-13 (17)
81 PF07723 LRR_2: Leucine Rich R 87.0 0.51 1.1E-05 25.4 1.7 25 107-131 1-26 (26)
82 PRK15386 type III secretion pr 85.9 1.1 2.3E-05 41.1 4.2 95 23-145 72-170 (426)
83 KOG0532 Leucine-rich repeat (L 84.7 0.11 2.3E-06 49.0 -2.8 37 106-144 211-247 (722)
84 PF00560 LRR_1: Leucine Rich R 84.5 0.56 1.2E-05 24.0 1.0 13 107-119 1-13 (22)
85 smart00370 LRR Leucine-rich re 77.8 1.8 3.8E-05 22.8 1.6 14 106-119 2-15 (26)
86 smart00369 LRR_TYP Leucine-ric 77.8 1.8 3.8E-05 22.8 1.6 14 106-119 2-15 (26)
87 PF13306 LRR_5: Leucine rich r 70.6 0.28 6.2E-06 36.3 -3.8 104 20-140 9-112 (129)
88 KOG0532 Leucine-rich repeat (L 70.6 0.66 1.4E-05 43.9 -2.1 106 24-142 144-271 (722)
89 smart00365 LRR_SD22 Leucine-ri 69.8 3.7 7.9E-05 22.1 1.6 14 106-119 2-15 (26)
90 KOG1832 HIV-1 Vpr-binding prot 56.7 9.5 0.00021 38.2 2.8 18 100-117 1294-1311(1516)
91 smart00364 LRR_BAC Leucine-ric 46.1 12 0.00025 20.2 0.9 14 106-119 2-15 (26)
92 PF08004 DUF1699: Protein of u 40.8 19 0.00041 27.2 1.7 25 8-32 26-50 (131)
93 smart00446 LRRcap occurring C- 31.0 34 0.00073 18.4 1.2 16 125-140 7-22 (26)
94 PF07735 FBA_2: F-box associat 29.2 1.4E+02 0.0031 19.2 4.5 54 22-81 10-69 (70)
95 PHA02811 putative host range p 28.8 32 0.00068 27.9 1.3 15 166-180 156-170 (197)
96 KOG1189 Global transcriptional 25.8 41 0.00089 33.2 1.7 8 167-174 861-868 (960)
97 COG5406 Nucleosome binding fac 25.5 59 0.0013 31.6 2.6 8 167-174 913-920 (1001)
98 KOG1189 Global transcriptional 24.7 39 0.00085 33.4 1.3 6 24-29 607-612 (960)
99 KOG4242 Predicted myosin-I-bin 23.1 79 0.0017 29.7 2.9 137 6-144 195-342 (553)
100 KOG2274 Predicted importin 9 [ 23.1 43 0.00094 33.6 1.3 11 131-141 842-852 (1005)
101 PF08004 DUF1699: Protein of u 20.5 1.9E+02 0.0042 21.9 4.0 16 66-81 33-48 (131)
102 KOG4364 Chromatin assembly fac 20.1 1.1E+02 0.0023 30.0 3.1 24 150-176 504-529 (811)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.58 E-value=1.7e-15 Score=133.42 Aligned_cols=142 Identities=23% Similarity=0.298 Sum_probs=82.2
Q ss_pred ccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286 3 LCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80 (240)
Q Consensus 3 l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~ 80 (240)
|.+.+|+ +-+.++...+.+||++++|.+.+| .||+..+..+++.|++|++|+|-.|..+|+..++.+++.||+|+.|+
T Consensus 143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN 222 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN 222 (483)
T ss_pred ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence 4455555 555556666666666666666665 56666666666566666666666655566655555666666666666
Q ss_pred EeeccCCC-------------------CCc---------------------------cCChHHHHHHHhcCCCCCEEEee
Q 026286 81 RNMHPLDT-------------------ADK---------------------------LSQDDEANAIASTMPKLKRLEMA 114 (240)
Q Consensus 81 L~~~~~~~-------------------~~~---------------------------~~~d~~~~~i~~~~~~L~~L~L~ 114 (240)
++.++-.. .|+ .++|..+..++..+.+|+.|..+
T Consensus 223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s 302 (483)
T KOG4341|consen 223 LSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS 302 (483)
T ss_pred hccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence 55433110 011 25556666666666666666666
Q ss_pred Ccc-cCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 115 YHV-ISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 115 ~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
++. +++..+.++.++|++|++|-|++|.++
T Consensus 303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 303 SCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred CCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 665 666666666666666666666666655
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-14 Score=123.11 Aligned_cols=152 Identities=23% Similarity=0.231 Sum_probs=112.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|+|+.=.+|-.+|.-|.++|..|+.|.|.+..+.|..+..+| +..+|+.|+|+.|+.+|..++..+..+|+.|..|+|+
T Consensus 190 lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls 268 (419)
T KOG2120|consen 190 LDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS 268 (419)
T ss_pred hhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence 456666678888899999999999999999999998888888 7899999999999999999999999999999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc--cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNL 158 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~--it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~~L 158 (240)
.+... ++..-.+++.--++|+.|+|+|++ +....+..+.+.||+|.+|||+.|..+ ++..+ --++++|
T Consensus 269 Wc~l~------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l--~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 269 WCFLF------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML--KNDCFQEFFKFNYL 340 (419)
T ss_pred Hhhcc------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc--CchHHHHHHhcchh
Confidence 76431 222223344445777777777776 666667777777777777777777766 33322 2445555
Q ss_pred ccccC
Q 026286 159 KVLGP 163 (240)
Q Consensus 159 ~~L~~ 163 (240)
++|..
T Consensus 341 ~~lSl 345 (419)
T KOG2120|consen 341 QHLSL 345 (419)
T ss_pred eeeeh
Confidence 55544
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.50 E-value=4e-14 Score=124.80 Aligned_cols=158 Identities=26% Similarity=0.366 Sum_probs=113.6
Q ss_pred ccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286 3 LCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80 (240)
Q Consensus 3 l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~ 80 (240)
||..+|. .+|..+-.+.++|++|+.|-|..| ++++.++..++.+++.|+.|++..|..+++..+..++.+||.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 4444544 677777777777788888888777 67777788887778888888887777777777777777888888887
Q ss_pred EeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH-HHHhcCC
Q 026286 81 RNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK-FMKGNFP 156 (240)
Q Consensus 81 L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~-~l~~~~~ 156 (240)
++.+. .++++++.++. ..+..|..|.|.++..+.+...+.+..||+|+.+++-+|..++-... .++..+|
T Consensus 379 lshce------~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 379 LSHCE------LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhhhh------hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 76432 35666666654 34577888888888855555555566899999999999998843322 3457788
Q ss_pred CCccccCCCC
Q 026286 157 NLKVLGPFVM 166 (240)
Q Consensus 157 ~L~~L~~~~~ 166 (240)
++++.+.+.+
T Consensus 453 ~i~v~a~~a~ 462 (483)
T KOG4341|consen 453 NIKVHAYFAP 462 (483)
T ss_pred cceehhhccC
Confidence 8888777543
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=2.4e-13 Score=124.35 Aligned_cols=144 Identities=30% Similarity=0.333 Sum_probs=119.2
Q ss_pred cccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 026286 2 ALCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 79 (240)
Q Consensus 2 ~l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L 79 (240)
.|++..+. +||.++..++..|++|+.|.+.+| .+++.|+..++++||+|++|+|++|..+++.++.++++.||+|+.|
T Consensus 247 ~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 247 SLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred ccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 36677777 999999999999999999999989 4999999999999999999999999999999999999999999998
Q ss_pred EEeecc----CCC---CCc-cCC-hHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcc--------------cEE
Q 026286 80 CRNMHP----LDT---ADK-LSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--------------EFL 136 (240)
Q Consensus 80 ~L~~~~----~~~---~~~-~~~-d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~L--------------e~L 136 (240)
.+.... +.. .+. ... +..+..++..|++|+++.|.++.+++.++..++.+||+| +.|
T Consensus 327 ~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 327 KLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVL 406 (482)
T ss_pred hhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceE
Confidence 874322 111 111 122 467777888999999999999998888888888899877 777
Q ss_pred eccCCCCCC
Q 026286 137 DLRGCWDVK 145 (240)
Q Consensus 137 dL~~C~~v~ 145 (240)
+++.|..++
T Consensus 407 ~l~~~~~~t 415 (482)
T KOG1947|consen 407 NLSDCRLVT 415 (482)
T ss_pred ecccCcccc
Confidence 778787773
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.9e-13 Score=114.39 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=121.0
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 81 (240)
|.|-+.+..|.....||++ .+|+.|+|+.| ++|..++..+.+.|+.|..|+|++|...++..-.+++.-.++|+.|+|
T Consensus 215 lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred ccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 5677888899999999954 88999999998 899999999999999999999999987777655556666789999999
Q ss_pred eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCCCC
Q 026286 82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNL 158 (240)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~~L 158 (240)
++.+- ...+..+..+++.||+|.+|+|+.|. +++ ++...+-+++.|++|.|+.|+.+ ....+ ....|.|
T Consensus 294 sG~rr-----nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 294 SGYRR-----NLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSL 365 (419)
T ss_pred hhhHh-----hhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcce
Confidence 76532 23456788888999999999999998 888 44444458999999999999988 44322 2445666
Q ss_pred ccccC
Q 026286 159 KVLGP 163 (240)
Q Consensus 159 ~~L~~ 163 (240)
.+|..
T Consensus 366 ~yLdv 370 (419)
T KOG2120|consen 366 VYLDV 370 (419)
T ss_pred EEEEe
Confidence 65555
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=118.96 Aligned_cols=148 Identities=28% Similarity=0.321 Sum_probs=109.5
Q ss_pred cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecC-CCCCCHHH--HHHHHhcCCCCcEEEEeecc
Q 026286 10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~-c~~it~~~--l~~l~~~c~~L~~L~L~~~~ 85 (240)
.+...+..+...+++|+.|.+.+| .+++.++..++..+++|+.|++++ |..++... ...+++.|++|+.|.++.+.
T Consensus 175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 455566667767888888888888 788877788888888888888877 34444333 44577778888888886442
Q ss_pred CCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHH---HHhcCCCCccc
Q 026286 86 LDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVL 161 (240)
Q Consensus 86 ~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L 161 (240)
.+++.++.+++..||+|++|.+.+|. +|+.++.+++++||.|++|+|++|..+ ++.. +...|++++.|
T Consensus 255 ------~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 255 ------LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEALLKNCPNLREL 326 (482)
T ss_pred ------ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHHHHhCcchhhh
Confidence 26788888888888888888888887 888888888888888888888888888 4432 23557777776
Q ss_pred cCCC
Q 026286 162 GPFV 165 (240)
Q Consensus 162 ~~~~ 165 (240)
....
T Consensus 327 ~~~~ 330 (482)
T KOG1947|consen 327 KLLS 330 (482)
T ss_pred hhhh
Confidence 6543
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.4e-11 Score=107.25 Aligned_cols=133 Identities=20% Similarity=0.136 Sum_probs=68.5
Q ss_pred ccccccccchhcHHHHHh---CC-CCCcEEEeeCCCCCHHHHHHH---HhcCccCcEEEecCCCCCCHHHHHHHHhc---
Q 026286 3 LCLLDFLCADVDLFPGSA---SA-GSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAIGKH--- 72 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~---~~-~~L~~L~L~~~~itd~~l~~l---~~~~~~L~~L~Ls~c~~it~~~l~~l~~~--- 72 (240)
|.+..+.+++.++..+.. .+ ++|+.|.|++|.++..++..+ ...+++|+.|++++| .+++.++..+++.
T Consensus 113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~ 191 (319)
T cd00116 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKA 191 (319)
T ss_pred EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHh
Confidence 445555555544444332 22 555666666665553333222 223455666666654 3554444433322
Q ss_pred CCCCcEEEEeeccCCCCCccCChHHHHHH---HhcCCCCCEEEeeCcccCHHHHHHHHhcC----CcccEEeccCCCC
Q 026286 73 CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWD 143 (240)
Q Consensus 73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i---~~~~~~L~~L~L~~~~it~~~l~~l~~~c----~~Le~LdL~~C~~ 143 (240)
+++|+.|.++.+.+ ++.++..+ ...+++|++|++++|.+++.++..++..+ +.|++|++++|..
T Consensus 192 ~~~L~~L~L~~n~i-------~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 192 NCNLEVLDLNNNGL-------TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred CCCCCEEeccCCcc-------ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 23666666654432 23333222 23456677777777766666666655543 5677777776643
No 8
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=7.9e-12 Score=108.21 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=57.9
Q ss_pred HHHHhCCCCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHHHHHhcC---CCCcEEEEeeccCCCC
Q 026286 16 FPGSASAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTA 89 (240)
Q Consensus 16 ~~i~~~~~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~ 89 (240)
..+.+.++.|+.+++++|+|...|+..++ ..||+|+.|||..|+ +|..+-.++++.+ |+|+.|+++.+
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc----- 251 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC----- 251 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc-----
Confidence 33344455555555555555555543332 235555555555543 4444444444432 34444444433
Q ss_pred CccCChHHHHHHHh----cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCC
Q 026286 90 DKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWD 143 (240)
Q Consensus 90 ~~~~~d~~~~~i~~----~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~ 143 (240)
.+.+.|+.+++. ..|+|+.|.|.||.||.++...+.. .-|.|+.|+|++|..
T Consensus 252 --ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 --LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred --ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 233444444332 2355566666666655555444332 135555666655554
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=2.2e-10 Score=99.61 Aligned_cols=134 Identities=22% Similarity=0.142 Sum_probs=102.2
Q ss_pred ccccccccchhcHHHH---HhCCCCCcEEEeeCCCCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHH---hcC
Q 026286 3 LCLLDFLCADVDLFPG---SASAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIG---KHC 73 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i---~~~~~~L~~L~L~~~~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~---~~c 73 (240)
|.+..+.++..++..+ ...+++|++|+|++|.+++.++..+++. +++|+.|+|++| .+++.++..+. ..+
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASL 220 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhccc
Confidence 5677777775544443 3456789999999999998887776654 459999999997 57776655443 467
Q ss_pred CCCcEEEEeeccCCCCCccCChHHHHHHHhcC----CCCCEEEeeCcccCHHHHHHHH---hcCCcccEEeccCCCCC
Q 026286 74 KLLVVLCRNMHPLDTADKLSQDDEANAIASTM----PKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDV 144 (240)
Q Consensus 74 ~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~----~~L~~L~L~~~~it~~~l~~l~---~~c~~Le~LdL~~C~~v 144 (240)
|+|+.|.++.|+ +++.++..++..+ ++|++|++++|.|++.+...+. ..+++|++|++++|..-
T Consensus 221 ~~L~~L~ls~n~-------l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 221 KSLEVLNLGDNN-------LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCCCEEecCCCc-------CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 899999998774 4566777777665 7999999999999877765554 44578999999998766
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=1.3e-11 Score=99.27 Aligned_cols=142 Identities=23% Similarity=0.244 Sum_probs=55.7
Q ss_pred cchhcHHHHHhC--CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286 10 CADVDLFPGSAS--AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD 87 (240)
Q Consensus 10 ~tD~~L~~i~~~--~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~ 87 (240)
.|-..+..++.. +.++++|+|.+|.|+. +..+...+.+|+.|+|++| .|+. +..+ ..+++|+.|.++.|.+.
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l-~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNN-QITK--LEGL-PGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---
T ss_pred cccccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCC-CCcc--ccCc-cChhhhhhcccCCCCCC
Confidence 345555555543 5689999999999877 5666667899999999996 4553 3333 23699999999988653
Q ss_pred CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccCCC
Q 026286 88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFV 165 (240)
Q Consensus 88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~ 165 (240)
.. + ..+...+|+|++|.|++|+|++-.-...++.||+|+.|+|.+|+....... .+...+|+|+.|....
T Consensus 78 ~i-------~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 78 SI-------S-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp S--------C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cc-------c-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 21 1 123347899999999999987644445566899999999999987755444 4568999999998743
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=4.6e-10 Score=97.40 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=32.3
Q ss_pred HhCCCCCcEEEeeCCCCCHHHHHHHHh------------cCccCcEEEecCCCCCCHH---HHHHHHhcCCCCcEEEEee
Q 026286 19 SASAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKIGAP---ALEAIGKHCKLLVVLCRNM 83 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~itd~~l~~l~~------------~~~~L~~L~Ls~c~~it~~---~l~~l~~~c~~L~~L~L~~ 83 (240)
.++|.+|++|.|.+|++...+=..+++ .-|+||++...+|. +.+. .+....+.+|.|+.+++..
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEec
Confidence 345666666666666665544333222 13456666555532 2222 2223334445555555555
Q ss_pred ccC
Q 026286 84 HPL 86 (240)
Q Consensus 84 ~~~ 86 (240)
|.+
T Consensus 195 N~I 197 (382)
T KOG1909|consen 195 NGI 197 (382)
T ss_pred ccc
Confidence 443
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.8e-10 Score=98.46 Aligned_cols=124 Identities=20% Similarity=0.066 Sum_probs=88.6
Q ss_pred cHHHHHhC---CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCC
Q 026286 14 DLFPGSAS---AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD 90 (240)
Q Consensus 14 ~L~~i~~~---~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~ 90 (240)
++..|+.+ ..+|+.+.|.++.+...+....++.||+++.|+||.+-.-....+..|++.+|+|+.|+|+.|.+....
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 44445433 556777888888888777777888888888888888644455667778888888888888877664332
Q ss_pred ccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 91 KLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 91 ~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..... ..++.||.|.|++|.++...+..++..||.|+.|.|.++..+
T Consensus 189 ~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 189 SSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred cccch-------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 11111 156778888888888888888888888888888888777533
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.7e-10 Score=98.86 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=106.7
Q ss_pred ccccccchhcHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286 5 LLDFLCADVDLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83 (240)
Q Consensus 5 ~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~ 83 (240)
|.++.+.+......++.|++++.|+|++|-++. ..+..+++.+|+|+.|+|+.|. +..-.-.......++||.|.|+.
T Consensus 128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~ 206 (505)
T KOG3207|consen 128 LDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNS 206 (505)
T ss_pred ecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEecc
Confidence 455667776766788899999999999996654 7789999999999999999863 32211112222568899999987
Q ss_pred ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
|++ +...+..++..+|+|+.|.|.+|. +.-..... +-...|+.|||+++..+.....-....+|.|+.|.
T Consensus 207 CGl-------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 207 CGL-------SWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred CCC-------CHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 754 567788888899999999999985 32222111 12357888899888888655443345666666666
Q ss_pred CCC
Q 026286 163 PFV 165 (240)
Q Consensus 163 ~~~ 165 (240)
...
T Consensus 278 ls~ 280 (505)
T KOG3207|consen 278 LSS 280 (505)
T ss_pred ccc
Confidence 643
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=7.1e-10 Score=89.19 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=55.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|+|.+..++ .+..+...+.+|+.|+|++|.|+. +..+. .+++|+.|++++| .|+.-. ..+.+.||+|+.|.++
T Consensus 24 L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 24 LNLRGNQIS--TIENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLS 96 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-T
T ss_pred ccccccccc--cccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECc
Confidence 445555555 244555567899999999999886 44443 6899999999995 576421 2344578999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEEeccCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~LdL~~C~ 142 (240)
.|.+...+ .+..+ ..+|+|+.|+|.+|.++... -..++..+|+|+.||-....
T Consensus 97 ~N~I~~l~------~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 97 NNKISDLN------ELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TS---SCC------CCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcCCChH------HhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 88653221 12233 37899999999999987543 34667789999999886544
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.58 E-value=6.7e-08 Score=96.53 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
.+++|+.|+|++|.++......+...+++|+.|+|++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 45666666666665543322333335556666666554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.56 E-value=1.9e-08 Score=96.71 Aligned_cols=129 Identities=22% Similarity=0.205 Sum_probs=91.5
Q ss_pred cccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286 4 CLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83 (240)
Q Consensus 4 ~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~ 83 (240)
.+.+=..||.....+. ..++||.|+|++|+++.---. ...+++.|+.|+||+| +++. +..-...|+.|++|..+.
T Consensus 365 ylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHhcCcccccchhhhc-cccceeeeeecccccccCCHH-HHhchHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcC
Confidence 3445557777777666 678899999999966542222 2347888999999995 5553 222234578899999877
Q ss_pred ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286 84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD 148 (240)
Q Consensus 84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~ 148 (240)
|.+. .+..++ .+|.|+.++|+.|.++...+.+.+.. |+|++|||+|+.....+-
T Consensus 440 N~l~---------~fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 440 NQLL---------SFPELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred Ccee---------echhhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccch
Confidence 7541 122344 78999999999999998777776644 899999999998764343
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.52 E-value=2.8e-07 Score=88.66 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=94.5
Q ss_pred chhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCC
Q 026286 11 ADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD 90 (240)
Q Consensus 11 tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~ 90 (240)
+..-...++..+|+|++|.+++-.+...-+..++..+|||+.||+|++ +|+.- ..+ .+++||+.|.+-.-.+
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~LknLq~L~mrnLe~---- 207 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SRLKNLQVLSMRNLEF---- 207 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHH-hccccHHHHhccCCCC----
Confidence 445567788889999999998877766668888889999999999984 56642 222 3457888887743222
Q ss_pred ccCChHHHHHHHhcCCCCCEEEeeCccc-CHH-HHHHHH---hcCCcccEEeccCCCCCCCChHH---HHhcCCCCcccc
Q 026286 91 KLSQDDEANAIASTMPKLKRLEMAYHVI-STE-IVLKIL---SSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLG 162 (240)
Q Consensus 91 ~~~~d~~~~~i~~~~~~L~~L~L~~~~i-t~~-~l~~l~---~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~ 162 (240)
.+...+..+. .+++|+.|++|..+- ... .+...+ ..+|+|++||.+|... +... +....|+|+.+.
T Consensus 208 --e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi---~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 208 --ESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI---NEEILEELLNSHPNLQQIA 281 (699)
T ss_pred --CchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch---hHHHHHHHHHhCccHhhhh
Confidence 1235555665 789999999998872 222 233222 2479999999886433 3332 336677777776
Q ss_pred CC
Q 026286 163 PF 164 (240)
Q Consensus 163 ~~ 164 (240)
..
T Consensus 282 ~~ 283 (699)
T KOG3665|consen 282 AL 283 (699)
T ss_pred hh
Confidence 54
No 18
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.50 E-value=1.5e-08 Score=84.92 Aligned_cols=133 Identities=19% Similarity=0.162 Sum_probs=92.4
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~ 103 (240)
..+.+.+..|......+..+...+.+|+.|.+.++...|-..+.. +|+||.|.++.|.+.. ..++..++.
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~----Lp~LkkL~lsdn~~~~------~~~l~vl~e 88 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPK----LPKLKKLELSDNYRRV------SGGLEVLAE 88 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCC----cchhhhhcccCCcccc------cccceehhh
Confidence 445555655533333355566667888888888876544333333 3899999998873321 244556777
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHH--HHhcCCCCccccCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM 166 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~ 166 (240)
.+|+|++|++++|+|.+-.-..-++..++|..|++..|....+.+.. +-...|+|+.|.....
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88999999999999886444455667889999999999988777664 3366788888777554
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.49 E-value=1.6e-07 Score=93.82 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 84 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 84 (240)
.+++|+.|+|++|.++......+ .++++|+.|+|++|. ++......+ ..+++|+.|.++.|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n 222 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYN 222 (968)
T ss_pred cCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCC-CcCcCChHH-cCcCCccEEECcCC
Confidence 34455555555554332211122 244555555555432 222212222 23345555555444
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.31 E-value=9.1e-08 Score=88.38 Aligned_cols=121 Identities=20% Similarity=0.119 Sum_probs=79.8
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.|++|+.|.|++|+|+.-.-..+. .+..|++|+|+.| .|+- ..+......++|++|+|..|.+.+ .+. +++.+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~ls~---~IE-Daa~~ 387 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNELSW---CIE-DAAVA 387 (873)
T ss_pred hcccceeEeccccccccCChhHHH-HHHHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCeEEE---EEe-cchhh
Confidence 577888888888876642222332 5667888888874 3432 122223456888999887775532 232 34444
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHH
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF 150 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~ 150 (240)
+. .+|+|++|.|.||+|..-.-.++. +++.||+|+|.++..-+....+
T Consensus 388 f~-gl~~LrkL~l~gNqlk~I~krAfs-gl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 388 FN-GLPSLRKLRLTGNQLKSIPKRAFS-GLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hc-cchhhhheeecCceeeecchhhhc-cCcccceecCCCCcceeecccc
Confidence 44 799999999999997654444544 8999999999998866544443
No 21
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1.1e-05 Score=68.76 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCCCCcEEEeeCCCCCH---HHHHHHHhcCccCcEEEecCCCCCCH-------HHHHHHH-----hcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSD---SIVAQIAGRLSAVTFLDLSYCSKIGA-------PALEAIG-----KHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd---~~l~~l~~~~~~L~~L~Ls~c~~it~-------~~l~~l~-----~~c~~L~~L~L~~~~ 85 (240)
.||+|+.++|+.|.+.. .-+..+..+-++|++|.+++|. +.. +++..++ +.-|.|+++....|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 56777777777764432 3344445566667777776653 332 1222222 233566666665555
Q ss_pred CCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHH----hcCCcccEEeccCCC
Q 026286 86 LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCW 142 (240)
Q Consensus 86 ~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~----~~c~~Le~LdL~~C~ 142 (240)
+..+. .....+..+.-.+|+.+.|.+|.|..+|+..++ ..|++|+.|||+.+.
T Consensus 169 lengs----~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 169 LENGS----KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hccCc----HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 43221 111111222224555555555555555444332 245555555555443
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.18 E-value=7.8e-07 Score=82.36 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=25.6
Q ss_pred CCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCCC
Q 026286 107 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 165 (240)
Q Consensus 107 ~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 165 (240)
+|..|.|+.|+||.--. .+.+++|+|+.|+|..+..--..+-.+ +..+.|+.|+...
T Consensus 198 sL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~nlklqr 254 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQNLKLQR 254 (873)
T ss_pred hheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhh-cCchhhhhhhhhh
Confidence 44444444444443221 223456777777776554221111111 4455555555543
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=2.3e-06 Score=82.44 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=43.1
Q ss_pred CccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH
Q 026286 47 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 120 (240)
Q Consensus 47 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~ 120 (240)
-.+|+.|++++...++......++..+|+|++|.+++.. ...+....+..++|+|+.|+++++.|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-------~~~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-------FDNDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-------ecchhHHHHhhccCccceeecCCCCccC
Confidence 356777777776666666667777777777777775332 2334466666667777777777766554
No 24
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2e-06 Score=69.90 Aligned_cols=74 Identities=23% Similarity=0.156 Sum_probs=54.8
Q ss_pred cccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286 8 FLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83 (240)
Q Consensus 8 ~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~ 83 (240)
+.+.-+++..+- .+++|+.|.+.+| .+.|.++..+..-.|+|+.|+|++|+.||+.++..+.+ +++|+.|.+..
T Consensus 111 s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~ 185 (221)
T KOG3864|consen 111 SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD 185 (221)
T ss_pred chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence 333344444443 6778888888888 78888888888778888888888888888888877754 58888887753
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.00 E-value=7.8e-07 Score=83.08 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=68.5
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChH-----
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD----- 96 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~----- 96 (240)
.++|+.|+|++|.|+. +..-.....+|++|++|.| ++|. ...++. .++.|+.|.++.|.+++.|+...-.
T Consensus 244 l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrN-QLt~-LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRN-QLTV-LPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhhheeccCcCceee--eeccHHHHhhhhhhccccc-hhcc-chHHHh-hhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 3445555555554443 1111122445555555553 3331 112232 3477888888888887776532111
Q ss_pred HHHHH-----------HhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286 97 EANAI-----------ASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD 148 (240)
Q Consensus 97 ~~~~i-----------~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~ 148 (240)
..... .+.|++|+.|.|..|+ ||- ..-+.-+|.|+.|||+.++++.+..
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTL---PeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITL---PEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhcccccceeec---hhhhhhcCCcceeeccCCcCccCCC
Confidence 11111 2467899999999999 764 3334456899999999999885543
No 26
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=6.7e-06 Score=66.94 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=80.4
Q ss_pred CcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHh
Q 026286 50 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS 128 (240)
Q Consensus 50 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~ 128 (240)
++.++-+++ .|...++..+ +.++.|+.|.+..+. .+.|..+..|+.-.|+|+.|+|++|+ ||+.|+..+.
T Consensus 103 IeaVDAsds-~I~~eGle~L-~~l~~i~~l~l~~ck------~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~- 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHL-RDLRSIKSLSLANCK------YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL- 173 (221)
T ss_pred EEEEecCCc-hHHHHHHHHH-hccchhhhheecccc------chhhHHHHHhcccccchheeeccCCCeechhHHHHHH-
Confidence 677777774 6888888887 467888888885442 35677777888777999999999998 9999998877
Q ss_pred cCCcccEEeccCCCCCCCChH---HHHhcCCCCccccC
Q 026286 129 SCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKVLGP 163 (240)
Q Consensus 129 ~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~L~~ 163 (240)
++++|+.|.|++-..|..-+. .++...|++++...
T Consensus 174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 789999999988776632222 35677888887765
No 27
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.95 E-value=1e-06 Score=74.01 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=84.7
Q ss_pred ccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286 5 LLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 84 (240)
Q Consensus 5 ~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 84 (240)
+.+|++..-.+..+......|+.|.+.+++++. +..+- .+|+|+.|.+|.++.--..++..++..||+|++|.++.|
T Consensus 25 lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 25 LDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhcCCCcccccccccchhhhhhhccceee--cccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 344555554555555556667777766665543 23332 688999999998643344567888899999999999988
Q ss_pred cCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCC
Q 026286 85 PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 85 ~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.+... ..+.. .+.+++|+.|++++|..+. .--..+..-+|+|++||-..+...
T Consensus 102 ki~~l------stl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 102 KIKDL------STLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred ccccc------cccch-hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 65321 11112 2367889999999999654 112344556789999876554433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=6.1e-06 Score=71.18 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.|.++.|++++|+|+. +..++ .+++|+.|+||+|. ++ .+..+-..+.|+|+|.|+.|-+ +....+
T Consensus 306 ~Pkir~L~lS~N~i~~--v~nLa-~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~i---------E~LSGL 370 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRT--VQNLA-ELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNKI---------ETLSGL 370 (490)
T ss_pred ccceeEEeccccceee--ehhhh-hcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhhH---------hhhhhh
Confidence 4567777777776654 23333 56677777777642 33 2333333456677777764422 111112
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 149 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~ 149 (240)
. .+-.|..|++++|+|..-....-+.++|.|++|.|.+++.-...+.
T Consensus 371 ~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 371 R-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred H-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 1 3456778888888876644444455788888888888876644444
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=6.1e-06 Score=71.02 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=63.5
Q ss_pred CcEEEeeCCCCCHHH-HHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 25 LQTLRLPRSEMSDSI-VAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 25 L~~L~L~~~~itd~~-l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
+.-|.+.+|.|...| +..++..++.++.|+|.+| +|++ .-+.+|.+++|.|+.|+|++|++...- ..+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--------~~lp 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI--------KSLP 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc--------ccCc
Confidence 334555666555443 4555666777777777764 4543 455666677777777777766552210 0000
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C 141 (240)
-...+|+.|-|.|..+....+...++..|.++.|.++.+
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 133466777777766666666666666676666666555
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.86 E-value=6.1e-07 Score=83.78 Aligned_cols=123 Identities=18% Similarity=0.139 Sum_probs=75.8
Q ss_pred cHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccC
Q 026286 14 DLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS 93 (240)
Q Consensus 14 ~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~ 93 (240)
+|..-.++..+|++|.|++|.+....+..+. .++.|+.|.+++ ++-|-..+..-...+.||+.+.+++|.+..
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~-TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~----- 236 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSN-TQRTLDNIPTSLDDLHNLRDVDLSENNLPI----- 236 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhccc-ccchhhcCCCchhhhhhhhhccccccCCCc-----
Confidence 3344455667777788877766665555543 556666777766 333322222222334678888887775421
Q ss_pred ChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH
Q 026286 94 QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 149 (240)
Q Consensus 94 ~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~ 149 (240)
+....-++++|+.|+|++|.||.-.+. .....+|++|+|+.+..+.+.+.
T Consensus 237 ----vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 237 ----VPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred ----chHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHH
Confidence 112223678999999999998864332 23457899999998887755553
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=1.1e-05 Score=82.34 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
+++|+.|+|++|..... +..-..++++|+.|+|++|.+++. +... ..+++|+.|.++.+..- ..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~--LP~~-~~L~sL~~L~Ls~c~~L-----------~~~ 841 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLET--LPTG-INLESLESLDLSGCSRL-----------RTF 841 (1153)
T ss_pred cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCe--eCCC-CCccccCEEECCCCCcc-----------ccc
Confidence 45677777777632211 222234678888888888765542 1111 14677888887644210 011
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 145 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~ 145 (240)
....++|++|+|++|.|+. +..-+..+++|+.|+|++|.++.
T Consensus 842 p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred cccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcC
Confidence 1134678888888888763 44445678899999999998873
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=1.8e-05 Score=68.19 Aligned_cols=71 Identities=28% Similarity=0.294 Sum_probs=50.6
Q ss_pred cHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 14 DLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 14 ~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
....++..|..++.|+|.+|.|++ ..+..|.+++|.|++|+|+.| .++. .+..+..-.++|++|-|++..+
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCCC
Confidence 346678889999999999999887 668888889999999999875 3432 1233322235677777765444
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.69 E-value=5.2e-06 Score=80.33 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=82.0
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC--CCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC--SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c--~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
.+.|+.|.|.+|.+++..+..+. .+++|+.|+|++| +.+.+..+ +.++.|+.|.|++|.+. .-..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~--------~Lp~ 424 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLT--------TLPD 424 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhh--------hhhH
Confidence 44677888889999999888887 8899999999996 22333332 34578999999887552 1122
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcC--CCCccccC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF--PNLKVLGP 163 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~--~~L~~L~~ 163 (240)
.++ +++.|+.|...+|.|.. ...++ ..|+|+++||+.+. + +...+.+.. |+||.|..
T Consensus 425 tva-~~~~L~tL~ahsN~l~~--fPe~~-~l~qL~~lDlS~N~-L--~~~~l~~~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 425 TVA-NLGRLHTLRAHSNQLLS--FPELA-QLPQLKVLDLSCNN-L--SEVTLPEALPSPNLKYLDL 483 (1081)
T ss_pred HHH-hhhhhHHHhhcCCceee--chhhh-hcCcceEEecccch-h--hhhhhhhhCCCcccceeec
Confidence 334 78899999988888542 23444 68999999998554 4 222222222 46666654
No 34
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=1.4e-05 Score=68.20 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=64.5
Q ss_pred chhcHHHHHhC--CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286 11 ADVDLFPGSAS--AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT 88 (240)
Q Consensus 11 tD~~L~~i~~~--~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~ 88 (240)
|..+....++. ..+.+.|++.+|+++|- .|++++|.|+.|.||- ++|+ .+..+ ..|++|++|.|..|.+
T Consensus 5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSv-NkIs--sL~pl-~rCtrLkElYLRkN~I-- 75 (388)
T KOG2123|consen 5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSV-NKIS--SLAPL-QRCTRLKELYLRKNCI-- 75 (388)
T ss_pred HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeec-cccc--cchhH-HHHHHHHHHHHHhccc--
Confidence 44444444432 34677888888888873 3556788888888886 3565 34444 4567777777755532
Q ss_pred CCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHH---HHHHHhcCCcccEEe
Q 026286 89 ADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEI---VLKILSSCALLEFLD 137 (240)
Q Consensus 89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~---l~~l~~~c~~Le~Ld 137 (240)
.+-.-.+-.+++|+|+.|=|.-|. ....| -..++..+|+|+.||
T Consensus 76 -----~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 76 -----ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 233333334466666666666555 11111 224455566666664
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.62 E-value=3.7e-05 Score=78.53 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=73.7
Q ss_pred HhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 19 SASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
..++++|+.|.|++| .+.. +.... .+++|+.|+|++|..+.. +....++|+.|.|+.+.+.. +
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~----i---- 861 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEE----V---- 861 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccc-----ccccccccCEeECCCCCCcc----C----
Confidence 347899999999998 4542 22222 588999999999976542 22334789999997765421 1
Q ss_pred HHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286 98 ANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVK 145 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~ 145 (240)
...+ ..+++|+.|+|++|+ ++. +......+++|+.|++++|..++
T Consensus 862 P~si-~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 862 PWWI-EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hHHH-hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 1122 378899999999876 654 33334567888888888887663
No 36
>PLN03150 hypothetical protein; Provisional
Probab=97.55 E-value=9.2e-05 Score=70.98 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~ 103 (240)
.++.|+|++|.++...-..+ ..+++|+.|+|++| .++......+ ..+++|+.|.|+.|.+.. .....+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N~lsg-------~iP~~l~- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYNSFNG-------SIPESLG- 487 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCCCCCC-------CCchHHh-
Confidence 37778888887754333333 37888899998885 4554333333 457888888888775521 1111233
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
.+++|++|+|++|.++...-..+.....++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 788888999888887654333333333455666666544
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.54 E-value=0.00079 Score=57.59 Aligned_cols=138 Identities=15% Similarity=0.081 Sum_probs=90.0
Q ss_pred HhCCCCCcEEEeeCCCCCHHHHHHH-------H-----hcCccCcEEEecCCCCCCH--HHHHHHHhcCCCCcEEEEeec
Q 026286 19 SASAGSLQTLRLPRSEMSDSIVAQI-------A-----GRLSAVTFLDLSYCSKIGA--PALEAIGKHCKLLVVLCRNMH 84 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~itd~~l~~l-------~-----~~~~~L~~L~Ls~c~~it~--~~l~~l~~~c~~L~~L~L~~~ 84 (240)
..+...|++|.|++|++...+=..+ + ..-|.|++.....|...+. .-..+..+.-.+|+.+++-.|
T Consensus 116 is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 116 ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence 3467899999999997654322222 2 2358899999988643332 223333344379999999888
Q ss_pred cCCCCCccCChHHHHHH----HhcCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCCCCCChHHHHhc---
Q 026286 85 PLDTADKLSQDDEANAI----ASTMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFMKGN--- 154 (240)
Q Consensus 85 ~~~~~~~~~~d~~~~~i----~~~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~v~~~~~~l~~~--- 154 (240)
.+ ...++..+ +..+++|+.|+|..|.+|..+-..++. ..+.|+.|.+..|-.-+-....+.+.
T Consensus 196 gI-------rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 196 GI-------RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred Cc-------CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 54 33443333 236799999999999998877665544 45779999999998764333344333
Q ss_pred --CCCCccccC
Q 026286 155 --FPNLKVLGP 163 (240)
Q Consensus 155 --~~~L~~L~~ 163 (240)
.|+|..|..
T Consensus 269 ~~~p~l~~L~~ 279 (388)
T COG5238 269 KFVPNLMPLPG 279 (388)
T ss_pred hcCCCcccccc
Confidence 455554443
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=9.3e-06 Score=77.08 Aligned_cols=103 Identities=27% Similarity=0.362 Sum_probs=57.4
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
.|+.|+|++|++++ +. ..+.|++|+.|+|++|. ++ .+..++. .|+ |..|.+..|-+ ..+..|.
T Consensus 188 ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~-L~--~vp~l~~~gc~-L~~L~lrnN~l---------~tL~gie 251 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNC-LR--HVPQLSMVGCK-LQLLNLRNNAL---------TTLRGIE 251 (1096)
T ss_pred Hhhhhccchhhhhh--hH-HHHhcccccccccccch-hc--cccccchhhhh-heeeeecccHH---------HhhhhHH
Confidence 45556666665554 22 33355666666666542 22 1122221 122 55555543321 2233333
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
++.+|+.|+|++|-|.+-.-...+..+..|+.|.|.|++.
T Consensus 252 -~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 -NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7788888999988877665555555667788888888763
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=4e-05 Score=66.24 Aligned_cols=106 Identities=20% Similarity=0.102 Sum_probs=72.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
-...|++|+|++|.|+. +..-.+-.|.++.|++|+|. |+. +..+ +.+++|+.|+|+.|-+ .....
T Consensus 282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~--v~nL-a~L~~L~~LDLS~N~L---------s~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRT--VQNL-AELPQLQLLDLSGNLL---------AECVG 346 (490)
T ss_pred hHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eee--ehhh-hhcccceEeecccchh---------Hhhhh
Confidence 34568889999998865 44455567999999999964 442 2222 3568999999987743 22222
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.-..+-+++.|.|++|.|.+-+- +.++-.|..||++++..-
T Consensus 347 wh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchh
Confidence 33467889999999998654221 224557899999987755
No 40
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.38 E-value=0.00018 Score=39.09 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=17.2
Q ss_pred CccCcEEEecCCCCCCHHHHHHHHh
Q 026286 47 LSAVTFLDLSYCSKIGAPALEAIGK 71 (240)
Q Consensus 47 ~~~L~~L~Ls~c~~it~~~l~~l~~ 71 (240)
||+|+.|+|++|.+||+.++.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5667777777777777777766653
No 41
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=8.1e-05 Score=63.68 Aligned_cols=116 Identities=22% Similarity=0.180 Sum_probs=84.2
Q ss_pred CCHHHHHHHHhc--CccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEE
Q 026286 35 MSDSIVAQIAGR--LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 112 (240)
Q Consensus 35 itd~~l~~l~~~--~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~ 112 (240)
+|...+..-++. +.+.+.||+-+|. +++- .|.+..|.|+.|.|+.|.+. .+.. ...|++|++|.
T Consensus 4 LTe~mV~~raK~sdl~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNkIs---------sL~p-l~rCtrLkElY 69 (388)
T KOG2123|consen 4 LTESMVYIRAKCSDLENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNKIS---------SLAP-LQRCTRLKELY 69 (388)
T ss_pred HHHHHHHHHHHhhHHHHhhhhcccCCC-ccHH---HHHHhcccceeEEeeccccc---------cchh-HHHHHHHHHHH
Confidence 344444444422 5688999999984 6763 45667799999999987542 1122 24889999999
Q ss_pred eeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH----HHHhcCCCCccccCC
Q 026286 113 MAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGPF 164 (240)
Q Consensus 113 L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~----~l~~~~~~L~~L~~~ 164 (240)
|..|.|.+-.-.+-++++|+|+.|.|-.++-....+. .+.+..|+||+|...
T Consensus 70 LRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 70 LRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 9999999888888889999999999977665533332 345788999998764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.20 E-value=2e-05 Score=51.87 Aligned_cols=35 Identities=20% Similarity=-0.000 Sum_probs=14.9
Q ss_pred ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286 48 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 84 (240)
Q Consensus 48 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 84 (240)
|+|+.|++++| +++.- .....+.+++|+.|.++.|
T Consensus 1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCC
Confidence 45555555554 33321 1112233355555555444
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.14 E-value=3.8e-05 Score=50.57 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=19.0
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
.+++|++|+|++|.|+.-. ...+.++++|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 4555666666655544211 1223455566666665553
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.08 E-value=0.00049 Score=42.37 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=23.8
Q ss_pred CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
|+|++|+|++|.|++ +...+.+|++|+.|++++|..
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 467788888887774 444356788888888887753
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.08 E-value=0.00014 Score=64.91 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=39.0
Q ss_pred hcCCCCCEEEeeCcccCHHHH-------------------H----HHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCc
Q 026286 103 STMPKLKRLEMAYHVISTEIV-------------------L----KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 159 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l-------------------~----~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~ 159 (240)
+.+|+|++|+|++|+||.-.- . .+.++..+|+.|+|.++...+....++ +....|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF-~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF-QTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc-cccceee
Confidence 466999999999999765211 1 123556778888888877665454443 3334455
Q ss_pred cccCCC
Q 026286 160 VLGPFV 165 (240)
Q Consensus 160 ~L~~~~ 165 (240)
.|..+.
T Consensus 350 ~l~l~~ 355 (498)
T KOG4237|consen 350 TLNLLS 355 (498)
T ss_pred eeehcc
Confidence 555543
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.02 E-value=0.00068 Score=36.74 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=16.9
Q ss_pred CCCCCEEEeeCcc-cCHHHHHHHHh
Q 026286 105 MPKLKRLEMAYHV-ISTEIVLKILS 128 (240)
Q Consensus 105 ~~~L~~L~L~~~~-it~~~l~~l~~ 128 (240)
||+|++|+|++|. ||+.++.++++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4677777777776 77777776653
No 47
>PLN03150 hypothetical protein; Provisional
Probab=96.96 E-value=0.0011 Score=63.60 Aligned_cols=87 Identities=18% Similarity=0.303 Sum_probs=61.2
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|+.|+|++|.++.. +......+++|+.|+|++| .++......++ .+++|+.|.|+.|.+.. .....
T Consensus 440 ~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g-------~iP~~ 509 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGNSLSG-------RVPAA 509 (623)
T ss_pred CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCCcccc-------cCChH
Confidence 689999999999988653 3333458999999999996 56765444554 67999999998876521 11112
Q ss_pred HHhcCCCCCEEEeeCcc
Q 026286 101 IASTMPKLKRLEMAYHV 117 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~ 117 (240)
+.....++..+++.+|.
T Consensus 510 l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 LGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhhccccCceEEecCCc
Confidence 33234567788888886
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.00027 Score=57.82 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=57.8
Q ss_pred hcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH-
Q 026286 45 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV- 123 (240)
Q Consensus 45 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l- 123 (240)
..+++|..|.|++| .|+.- -..+....|+|+.|.|..|++..- ..+..++ .||+|++|.+-+|.++...-
T Consensus 61 p~l~rL~tLll~nN-rIt~I-~p~L~~~~p~l~~L~LtnNsi~~l------~dl~pLa-~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRI-DPDLDTFLPNLKTLILTNNSIQEL------GDLDPLA-SCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CCccccceEEecCC-cceee-ccchhhhccccceEEecCcchhhh------hhcchhc-cCCccceeeecCCchhcccCc
Confidence 35677888888774 56642 234555668888888876654211 2233344 78899999988888776542
Q ss_pred -HHHHhcCCcccEEeccC
Q 026286 124 -LKILSSCALLEFLDLRG 140 (240)
Q Consensus 124 -~~l~~~c~~Le~LdL~~ 140 (240)
..++..+|+|++||.++
T Consensus 132 R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeEEEEecCcceEeehhh
Confidence 24455678899998865
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.91 E-value=0.00079 Score=41.45 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCC
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG 62 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it 62 (240)
++|++|+|++|.|++ +.....++++|+.|++++| .|+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 467788888887775 4553457888888888775 455
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.00031 Score=57.42 Aligned_cols=107 Identities=23% Similarity=0.200 Sum_probs=73.2
Q ss_pred cCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHH
Q 026286 46 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 125 (240)
Q Consensus 46 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~ 125 (240)
-.-+...++|+++...-.. ..-+.++|.+|-++.|++...+ ..+...+|+|+.|.|.+|+|..-+=..
T Consensus 40 ~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccccceecccccchhhcc----cCCCccccceEEecCCcceeec--------cchhhhccccceEEecCcchhhhhhcc
Confidence 3566778888885422211 1235689999999988764332 124456799999999999987766555
Q ss_pred HHhcCCcccEEeccCCCCCCCChHH--HHhcCCCCccccCC
Q 026286 126 ILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPF 164 (240)
Q Consensus 126 l~~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~ 164 (240)
-+..||+|++|.+-+++.-...+.. +....|+|++|...
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 5669999999999888755333331 23566777777654
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.79 E-value=2.1e-05 Score=62.89 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=74.6
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
..+++.|.|++|.++-- -..++ .+.+|+.|+++++ +|+. +..-...+|.||.|++++|++... ..++
T Consensus 32 ~s~ITrLtLSHNKl~~v-ppnia-~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l-----prgf--- 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-PPNIA-ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL-----PRGF--- 98 (264)
T ss_pred hhhhhhhhcccCceeec-CCcHH-Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC-----cccc---
Confidence 45788889999976541 12233 6788999999884 5553 222234568999999998875321 1111
Q ss_pred HhcCCCCCEEEeeCcccCHHH----------HHHH-------------HhcCCcccEEeccCCCCCCCChH
Q 026286 102 ASTMPKLKRLEMAYHVISTEI----------VLKI-------------LSSCALLEFLDLRGCWDVKLDDK 149 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~----------l~~l-------------~~~c~~Le~LdL~~C~~v~~~~~ 149 (240)
.++|.|+.|+|.+|.++... +.++ +.++.+|+.|.++.+..+++..+
T Consensus 99 -gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke 168 (264)
T KOG0617|consen 99 -GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE 168 (264)
T ss_pred -CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH
Confidence 15688888888887765432 2222 24567899999999888866544
No 52
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.67 E-value=0.0015 Score=64.00 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=6.0
Q ss_pred CCcEEEeeCCCCC
Q 026286 24 SLQTLRLPRSEMS 36 (240)
Q Consensus 24 ~L~~L~L~~~~it 36 (240)
+|+.|.|.+|+++
T Consensus 223 ~L~~L~L~~N~Lt 235 (788)
T PRK15387 223 HITTLVIPDNNLT 235 (788)
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.64 E-value=0.00038 Score=64.59 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=31.9
Q ss_pred CChHHHHHHHhcC----CCCCEEEeeCcccCHHHHH---HHHhcCCcccEEeccCCCCC
Q 026286 93 SQDDEANAIASTM----PKLKRLEMAYHVISTEIVL---KILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 93 ~~d~~~~~i~~~~----~~L~~L~L~~~~it~~~l~---~l~~~c~~Le~LdL~~C~~v 144 (240)
+.+.++..+...+ ++|+++.++.|.|+..+.. ..+..|++++.|.++.+...
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3445555554443 3557777777777765544 33456677777777766654
No 54
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.62 E-value=0.00096 Score=65.25 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=23.1
Q ss_pred CCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 107 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 107 ~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
+|+.|+|++|.|+. +..-+.++++|+.|+|++|..-
T Consensus 423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCC
Confidence 45566666666552 3333446788899999887644
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.57 E-value=0.00031 Score=67.11 Aligned_cols=85 Identities=20% Similarity=0.070 Sum_probs=58.7
Q ss_pred HhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH
Q 026286 44 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 123 (240)
Q Consensus 44 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l 123 (240)
.+-+|.|++|||++| +++.- . ..+.|++|+.|+|+.|.+.... .+...--+|..|+|++|.++. +
T Consensus 183 Lqll~ale~LnLshN-k~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp---------~l~~~gc~L~~L~lrnN~l~t--L 247 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN-KFTKV--D-NLRRLPKLKHLDLSYNCLRHVP---------QLSMVGCKLQLLNLRNNALTT--L 247 (1096)
T ss_pred HHHHHHhhhhccchh-hhhhh--H-HHHhcccccccccccchhcccc---------ccchhhhhheeeeecccHHHh--h
Confidence 344788999999995 66653 2 3467899999999988664221 111111239999999998764 2
Q ss_pred HHHHhcCCcccEEeccCCCCC
Q 026286 124 LKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 124 ~~l~~~c~~Le~LdL~~C~~v 144 (240)
.. +.++++|+.|||+.+-..
T Consensus 248 ~g-ie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 248 RG-IENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred hh-HHhhhhhhccchhHhhhh
Confidence 22 337789999999987654
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.54 E-value=0.002 Score=64.11 Aligned_cols=110 Identities=22% Similarity=0.106 Sum_probs=54.9
Q ss_pred HhCCCCCcEEEeeCCCC-CHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 19 SASAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~i-td~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
+..|+.|++|-+..+.- -..+-..+...+|.|+.|+|++|..++ .+......+-+||.|+++...+. .
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~---------~ 609 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS---------H 609 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc---------c
Confidence 34566788887777742 222334445577888888888765433 22222223456777777644321 1
Q ss_pred HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC
Q 026286 98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~ 140 (240)
+..-...+.+|.+|++.++..-. .+..++..+++|++|.+.+
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cchHHHHHHhhheeccccccccc-cccchhhhcccccEEEeec
Confidence 11111244455566655544100 0123333455566665544
No 57
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.44 E-value=0.0025 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.2
Q ss_pred CCCCCEEEeeCcccCHHHHHHHH
Q 026286 105 MPKLKRLEMAYHVISTEIVLKIL 127 (240)
Q Consensus 105 ~~~L~~L~L~~~~it~~~l~~l~ 127 (240)
+++|++|+|++|.|++.++.++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47889999999999998888775
No 58
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.43 E-value=0.00074 Score=60.57 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred EeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCc----------------c
Q 026286 29 RLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADK----------------L 92 (240)
Q Consensus 29 ~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~----------------~ 92 (240)
.++++.++- +..+...+++|..|+|+++ .+.+ ....++ ....|+.|+++.|+|.--.. .
T Consensus 418 ~lsnn~isf--v~~~l~~l~kLt~L~L~NN-~Ln~-LP~e~~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 418 VLSNNKISF--VPLELSQLQKLTFLDLSNN-LLND-LPEEMG-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HhhcCcccc--chHHHHhhhcceeeecccc-hhhh-cchhhh-hhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 344444433 3445556777888888764 2322 122222 22447777777665532110 1
Q ss_pred CChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 93 SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 93 ~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
+..-....+ ..|.+|+.|+|.+|.|. .+..++.+|.+|++|+|.|++--
T Consensus 493 i~~vd~~~l-~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGL-KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHh-hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 111111122 36789999999999864 46778889999999999998754
No 59
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.42 E-value=0.00065 Score=63.04 Aligned_cols=160 Identities=17% Similarity=0.137 Sum_probs=85.7
Q ss_pred ccccccccchhcHHHHHhC---CCCCcEEEeeCCCCCHHHHHHHHhcCc----cCcEEEecCCCCCCHHHHHHHHhc---
Q 026286 3 LCLLDFLCADVDLFPGSAS---AGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEAIGKH--- 72 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~---~~~L~~L~L~~~~itd~~l~~l~~~~~----~L~~L~Ls~c~~it~~~l~~l~~~--- 72 (240)
|.|.+|...+.+...+++. .++|..|+|++|++.+.+...+...++ .|+.|.+..|. ++..+...++..
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEK 170 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhc
Confidence 4556666677666666654 556777778887777777777665543 35666666663 455443333221
Q ss_pred CCCCcEEEEeeccCCCCCc-------------------------cCChHHHHHHHhcC---CC-CCEEEeeCcccCHHHH
Q 026286 73 CKLLVVLCRNMHPLDTADK-------------------------LSQDDEANAIASTM---PK-LKRLEMAYHVISTEIV 123 (240)
Q Consensus 73 c~~L~~L~L~~~~~~~~~~-------------------------~~~d~~~~~i~~~~---~~-L~~L~L~~~~it~~~l 123 (240)
+..|+.+++..|.+...|. .++......++..+ +. ++.|++..|.+.+.++
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 4556666665554321111 12223333332222 22 5556677777776666
Q ss_pred HHHHhcCC----cccEEeccCCCCCCCChHHHH---hcCCCCccccC
Q 026286 124 LKILSSCA----LLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGP 163 (240)
Q Consensus 124 ~~l~~~c~----~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~ 163 (240)
..+...++ .+++++++.|.........+. ..|++++.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSL 297 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhc
Confidence 65554433 447777777776643333222 33444444444
No 60
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.33 E-value=0.0049 Score=57.20 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=23.2
Q ss_pred cHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCC
Q 026286 14 DLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 14 ~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c 58 (240)
+|..+..+-|.+..++|++|++-+ .++..+++..|+|..|+|++|
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344444455555555555554332 445555555555555555554
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.21 E-value=0.0017 Score=59.23 Aligned_cols=111 Identities=26% Similarity=0.319 Sum_probs=74.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+.+|+.|.+..|.|.. +..+...+++|+.|+|+++ +|+. +..+. .++.|+.|.+..|.+.... .
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~---------~ 157 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNLISDIS---------G 157 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheecccc-cccc--ccchh-hccchhhheeccCcchhcc---------C
Confidence 45688888888887754 4442457899999999985 5664 23332 2355999999877652211 1
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD 148 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~ 148 (240)
+ ..+++|+.+++++|+++...-.. +..++.|+.+.+.++.......
T Consensus 158 ~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 158 L-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred C-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence 1 13788999999999977644422 4678888888888877664443
No 62
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.16 E-value=0.0034 Score=33.14 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=9.9
Q ss_pred CCCcEEEeeCCCCCHHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIA 44 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~ 44 (240)
++|++|+|++|.|++.|+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4455555555555555544443
No 63
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.81 E-value=0.011 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCCEEEeeCcccCHHHHHHHHhcC
Q 026286 106 PKLKRLEMAYHVISTEIVLKILSSC 130 (240)
Q Consensus 106 ~~L~~L~L~~~~it~~~l~~l~~~c 130 (240)
++|++|+|++|.|+++|+.++.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5789999999999999988887644
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.58 E-value=0.0058 Score=54.96 Aligned_cols=127 Identities=22% Similarity=0.182 Sum_probs=65.1
Q ss_pred cchhcHHHH---HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc-
Q 026286 10 CADVDLFPG---SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP- 85 (240)
Q Consensus 10 ~tD~~L~~i---~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~- 85 (240)
+++-.+..+ ...+++|+.|.++.|.+++ +.......++|+.|+++++ +++. +........+|++|.++.|+
T Consensus 147 l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 147 LSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred ccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcc
Confidence 344444443 3467777777777777766 3333325677777777774 3442 22211222346666665542
Q ss_pred CCCCC----------ccCChHHH---HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 86 LDTAD----------KLSQDDEA---NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 86 ~~~~~----------~~~~d~~~---~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..... ..+..... ......++.|+.|++++|.|+.-.. +.....|+.|++++....
T Consensus 222 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 11000 00001100 1223355667777777777665333 345667777777776554
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.58 E-value=0.0062 Score=54.81 Aligned_cols=104 Identities=26% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcC-ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~-~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
+.++.|.+.++.+++ +....... ++|+.|+++++ .+.. +..-...+|+|+.|.++.|++. .+...
T Consensus 116 ~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N-~i~~--l~~~~~~l~~L~~L~l~~N~l~---------~l~~~ 181 (394)
T COG4886 116 TNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDN-KIES--LPSPLRNLPNLKNLDLSFNDLS---------DLPKL 181 (394)
T ss_pred cceeEEecCCccccc--Cccccccchhhccccccccc-chhh--hhhhhhccccccccccCCchhh---------hhhhh
Confidence 567778887776665 33443344 37888888774 3432 2122356688888888766431 11111
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
....++|+.|.+++|.++.-. ..+.....|++|.++++.
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCc
Confidence 115677777777777755422 211223346666666653
No 66
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.48 E-value=0.018 Score=56.50 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=29.9
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
++|+.|+|++|.|+. +.... +++|+.|+|++| +++. ....+ .++|+.|.|+.|.+
T Consensus 199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N-~Lts-LP~~l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSN-QLTS-IPATL---PDTIQEMELSINRI 253 (754)
T ss_pred cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCC-cccc-CChhh---hccccEEECcCCcc
Confidence 467778887776653 22211 357777777775 3442 11112 14566666665543
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.18 E-value=0.021 Score=56.99 Aligned_cols=110 Identities=23% Similarity=0.227 Sum_probs=67.9
Q ss_pred HhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 19 SASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
..+.|.|+.|+|++| .++. ++.....+-+||.|+|++ +.|+ .+..-.+.++.|.+|++..+.. -..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk~L~~Lnl~~~~~--------l~~ 633 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLKKLIYLNLEVTGR--------LES 633 (889)
T ss_pred HhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHHHhhheeccccccc--------ccc
Confidence 447899999999987 4433 445555788999999998 5676 1222223346788888854321 011
Q ss_pred HHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCC
Q 026286 98 ANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGC 141 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C 141 (240)
...+...+++||+|.+.+.. -.+..+..-+.++.+|+.|....+
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 13455568999999998776 222333333456666666655433
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.17 E-value=0.0021 Score=58.55 Aligned_cols=110 Identities=25% Similarity=0.275 Sum_probs=69.3
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+..++.+.+..+.|.. +..-...+.+|+.|++..+ +|.. +..+..++++|+.|.++.|.+.. +..
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~---------i~~ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITK---------LEG 135 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeecccc-chhh--cccchhhhhcchheecccccccc---------ccc
Confidence 34555666655555544 1222235788899999874 4442 33323567999999998775521 112
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD 148 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~ 148 (240)
+. .++.|+.|++++|.|+...- +..++.|+.++++++..+....
T Consensus 136 l~-~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 136 LS-TLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hh-hccchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhh
Confidence 22 55669999999999776332 1236888999999888775444
No 69
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.15 E-value=0.031 Score=30.75 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=13.6
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhc
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGR 46 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~ 46 (240)
++|++|+|++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 355566666666666655555543
No 70
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.85 E-value=0.013 Score=52.69 Aligned_cols=93 Identities=20% Similarity=0.087 Sum_probs=59.4
Q ss_pred HHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCccc
Q 026286 39 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 118 (240)
Q Consensus 39 ~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~i 118 (240)
+-..-.+++|+|+.|+|++| +|+.-.-.++ .....++.|.|..|.+. ..-..+...+..|+.|+|++|+|
T Consensus 265 cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N~l~--------~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRNKLE--------FVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred ChHHHHhhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcchHH--------HHHHHhhhccccceeeeecCCee
Confidence 33444667899999999984 6765322232 23366888888766441 11122445778999999999998
Q ss_pred CHHHHHHHHhcCCcccEEeccCCC
Q 026286 119 STEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 119 t~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
|.-+-.+ .+....|..|.|-+++
T Consensus 335 t~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 335 TTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred EEEeccc-ccccceeeeeehccCc
Confidence 7643332 2345678888886654
No 71
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.43 E-value=0.002 Score=51.76 Aligned_cols=85 Identities=27% Similarity=0.250 Sum_probs=56.2
Q ss_pred cCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHH
Q 026286 46 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 125 (240)
Q Consensus 46 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~ 125 (240)
...+++.|.||++ +++.- ...|+ .+++|+.|++..|.+ +....-.+++|+|++|+++-|++.. +..
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-ppnia-~l~nlevln~~nnqi---------e~lp~~issl~klr~lnvgmnrl~~--lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-PPNIA-ELKNLEVLNLSNNQI---------EELPTSISSLPKLRILNVGMNRLNI--LPR 96 (264)
T ss_pred chhhhhhhhcccC-ceeec-CCcHH-Hhhhhhhhhcccchh---------hhcChhhhhchhhhheecchhhhhc--Ccc
Confidence 4677888999984 56531 12232 347899999976643 2222223489999999999887432 222
Q ss_pred HHhcCCcccEEeccCCCCC
Q 026286 126 ILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 126 l~~~c~~Le~LdL~~C~~v 144 (240)
-...+|.|+.|||+.+..-
T Consensus 97 gfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred ccCCCchhhhhhccccccc
Confidence 2456899999999887643
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.14 E-value=0.014 Score=45.21 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCcEEEeeCCCCCH--HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 24 SLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 24 ~L~~L~L~~~~itd--~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.+..+.|++|.+-. ..+..+ .+...|+..+|++|. +. +..+.+....|.++.|++..|.+ ++ ....+
T Consensus 28 E~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~nei-------sd-vPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANNEI-------SD-VPEEL 96 (177)
T ss_pred HhhhcccccchhhHHHHHHHHH-hCCceEEEEecccch-hh-hCCHHHhhccchhhhhhcchhhh-------hh-chHHH
Confidence 45666777775431 222333 356777777887753 21 22345555667788888865533 11 12224
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD 147 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~ 147 (240)
| ++|.|+.|++++|.+... ...++ .+.+|-.|+..++....++
T Consensus 97 A-am~aLr~lNl~~N~l~~~-p~vi~-~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 97 A-AMPALRSLNLRFNPLNAE-PRVIA-PLIKLDMLDSPENARAEID 139 (177)
T ss_pred h-hhHHhhhcccccCccccc-hHHHH-HHHhHHHhcCCCCccccCc
Confidence 4 788888888888886532 22233 3566777777666555433
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.96 E-value=0.028 Score=43.70 Aligned_cols=96 Identities=22% Similarity=0.175 Sum_probs=64.6
Q ss_pred HHHHHHHhcC---ccCcEEEecCCCCC-CHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEe
Q 026286 38 SIVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEM 113 (240)
Q Consensus 38 ~~l~~l~~~~---~~L~~L~Ls~c~~i-t~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L 113 (240)
.|+...+++| .-+..|+|+.|... -...+-.+. .-..|+...|+.|.+.. -...+....|.++.|+|
T Consensus 14 rgV~evVercedakE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~fk~--------fp~kft~kf~t~t~lNl 84 (177)
T KOG4579|consen 14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNGFKK--------FPKKFTIKFPTATTLNL 84 (177)
T ss_pred hhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccchhhh--------CCHHHhhccchhhhhhc
Confidence 4566666665 35888999998532 122333333 23678888887765421 11234446678999999
Q ss_pred eCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 114 AYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 114 ~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
++|.|++--.. +..+|.|+.|+++.+...
T Consensus 85 ~~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 85 ANNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred chhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 99999875554 457999999999999877
No 74
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.87 E-value=0.084 Score=51.88 Aligned_cols=103 Identities=12% Similarity=0.069 Sum_probs=68.0
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|+.|.+++|.++. +..-. +++|+.|+|++| +++. ....+ .++|+.|.|+.|.+.. +.. . +
T Consensus 324 ~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N-~L~~-LP~~l---p~~L~~LdLs~N~Lt~----LP~-~---l 386 (754)
T PRK15370 324 PPGLKTLEAGENALTS--LPASL--PPELQVLDVSKN-QITV-LPETL---PPTITTLDVSRNALTN----LPE-N---L 386 (754)
T ss_pred cccceeccccCCcccc--CChhh--cCcccEEECCCC-CCCc-CChhh---cCCcCEEECCCCcCCC----CCH-h---H
Confidence 3689999999997764 22211 478999999996 4552 11122 3689999998776532 111 1 1
Q ss_pred HhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
. +.|+.|++++|+++. ..+..+...+|.+..|+|.++...
T Consensus 387 ~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 P---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred H---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 1 257888899888763 345555666788899999887754
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.77 E-value=0.12 Score=48.35 Aligned_cols=94 Identities=27% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCc--ccCHHHHHHHHhcCCcccEEeccCCC
Q 026286 65 ALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 65 ~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~--~it~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
.++++....|.+..+.|+.|++. .-+.+..|+...|+|+.|+|++| .+....-..=+ +...|+.|-+.|++
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~------~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLY------HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNP 281 (585)
T ss_pred HHHHhhcCCcceeeeecccchhh------chhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCc
Confidence 45667777888888888777653 23566678888899999999988 34432222212 34668888888887
Q ss_pred CCCC-ChH-----HHHhcCCCCccccCCC
Q 026286 143 DVKL-DDK-----FMKGNFPNLKVLGPFV 165 (240)
Q Consensus 143 ~v~~-~~~-----~l~~~~~~L~~L~~~~ 165 (240)
..+. ... .+++.+|+|..|....
T Consensus 282 lc~tf~~~s~yv~~i~~~FPKL~~LDG~e 310 (585)
T KOG3763|consen 282 LCTTFSDRSEYVSAIRELFPKLLRLDGVE 310 (585)
T ss_pred cccchhhhHHHHHHHHHhcchheeecCcc
Confidence 7632 111 4567899998887643
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.60 E-value=0.049 Score=49.59 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcC-ccCcEEEecCCCCC
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKI 61 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~-~~L~~L~Ls~c~~i 61 (240)
|+++++|.+++|.|+. +. .+ ++|++|.+++|..+
T Consensus 51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nL 85 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNL 85 (426)
T ss_pred hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCc
Confidence 6777777777775543 11 23 35777777776654
No 77
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=93.07 E-value=0.16 Score=44.59 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCC---CcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCE
Q 026286 37 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL---LVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKR 110 (240)
Q Consensus 37 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~---L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~ 110 (240)
+..+..+-..=|+|+..+|++...|+...+..+...+++ .+.+.+. +...++..+.+++ +.++.|+.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla-------~tr~~d~vA~a~a~ml~~n~sl~s 259 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLA-------NTRSSDPVAFAIAEMLKENKSLTS 259 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhh-------cccCCchhHHHHHHHHhhcchhhh
Confidence 445556655568888888888777887777766655443 3333332 2233445555544 45588999
Q ss_pred EEeeCcccCHHHHHHHHhcCCc
Q 026286 111 LEMAYHVISTEIVLKILSSCAL 132 (240)
Q Consensus 111 L~L~~~~it~~~l~~l~~~c~~ 132 (240)
|++.+|.||..++.+++..++.
T Consensus 260 lnvesnFItg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 260 LNVESNFITGLGIMALLRALQS 281 (353)
T ss_pred eeccccccccHHHHHHHHHHhc
Confidence 9999999999999988866544
No 78
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.02 E-value=0.049 Score=49.25 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=57.9
Q ss_pred HHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH--------HHHHHH--------------HhcCCC
Q 026286 18 GSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA--------PALEAI--------------GKHCKL 75 (240)
Q Consensus 18 i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~--------~~l~~l--------------~~~c~~ 75 (240)
+....++|..|+|++|-+.+ +..-...+..|+.|+|+.+. +.- ..++.+ .+.+.+
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 34467889999999986554 22212235559999998752 211 111111 134567
Q ss_pred CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccC
Q 026286 76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 119 (240)
Q Consensus 76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it 119 (240)
|+.|++..|.+ +.+..+..+|.+|++|.|.||.|.
T Consensus 507 L~tLDL~nNdl---------q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDL---------QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCch---------hhCChhhccccceeEEEecCCccC
Confidence 88888876643 344456669999999999999976
No 79
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=91.88 E-value=0.27 Score=43.31 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=71.9
Q ss_pred cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHH---HHHHHhcCCCCcEEEEe
Q 026286 10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPA---LEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~---l~~l~~~c~~L~~L~L~ 82 (240)
..++.+..+-..-++|+.++|.+. +|+...+..++.. ....+...+.+ +..++.. +..+.+.|+.|++|++.
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecc
Confidence 357788889889999999999998 8988777766654 56677777776 4555543 44556788999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcC---CCCCEEEeeC
Q 026286 83 MHPLDTADKLSQDDEANAIASTM---PKLKRLEMAY 115 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~~ 115 (240)
.| .|+..++.++.+.+ ..|..|...+
T Consensus 264 sn-------FItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 264 SN-------FITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred cc-------ccccHHHHHHHHHHhccchhhHhhhhh
Confidence 77 46778888887666 3455554443
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.02 E-value=0.17 Score=24.33 Aligned_cols=13 Identities=23% Similarity=0.669 Sum_probs=5.6
Q ss_pred CCCCEEEeeCccc
Q 026286 106 PKLKRLEMAYHVI 118 (240)
Q Consensus 106 ~~L~~L~L~~~~i 118 (240)
++|+.|+|++|++
T Consensus 1 ~~L~~L~l~~n~L 13 (17)
T PF13504_consen 1 PNLRTLDLSNNRL 13 (17)
T ss_dssp TT-SEEEETSS--
T ss_pred CccCEEECCCCCC
Confidence 3455555555554
No 81
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=87.04 E-value=0.51 Score=25.40 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=18.2
Q ss_pred CCCEEEeeCcccCHH-HHHHHHhcCC
Q 026286 107 KLKRLEMAYHVISTE-IVLKILSSCA 131 (240)
Q Consensus 107 ~L~~L~L~~~~it~~-~l~~l~~~c~ 131 (240)
+||.|.|....+.++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 477888888776554 6778887776
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.90 E-value=1.1 Score=41.11 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 23 GSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 23 ~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
++|++|.+.+| .++. +.... .++|+.|.|++|..++ .+ -++|+.|.+.++... .+
T Consensus 72 ~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~n~~~------------~L 127 (426)
T PRK15386 72 NELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----GL---PESVRSLEIKGSATD------------SI 127 (426)
T ss_pred CCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----cc---ccccceEEeCCCCCc------------cc
Confidence 35777777766 3321 11111 2467777777765443 11 245666666433110 01
Q ss_pred HhcC-CCCCEEEeeCcc-cCHHHHHHHHhcC-CcccEEeccCCCCCC
Q 026286 102 ASTM-PKLKRLEMAYHV-ISTEIVLKILSSC-ALLEFLDLRGCWDVK 145 (240)
Q Consensus 102 ~~~~-~~L~~L~L~~~~-it~~~l~~l~~~c-~~Le~LdL~~C~~v~ 145 (240)
. .+ ++|+.|.+.+++ .....+.. .+ +.|++|.+++|..+.
T Consensus 128 ~-~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 128 K-NVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII 170 (426)
T ss_pred c-cCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc
Confidence 1 22 456666664332 21111111 12 579999999999774
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=84.68 E-value=0.11 Score=48.97 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=24.2
Q ss_pred CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
-.|..|++++|+|+. +..-..++++|++|-|.+++.-
T Consensus 211 LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CceeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence 456777777777654 3333456777777777777655
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.48 E-value=0.56 Score=23.97 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=7.5
Q ss_pred CCCEEEeeCcccC
Q 026286 107 KLKRLEMAYHVIS 119 (240)
Q Consensus 107 ~L~~L~L~~~~it 119 (240)
+|++|+|++|.|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.81 E-value=1.8 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=9.1
Q ss_pred CCCCEEEeeCcccC
Q 026286 106 PKLKRLEMAYHVIS 119 (240)
Q Consensus 106 ~~L~~L~L~~~~it 119 (240)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777777654
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.81 E-value=1.8 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=9.1
Q ss_pred CCCCEEEeeCcccC
Q 026286 106 PKLKRLEMAYHVIS 119 (240)
Q Consensus 106 ~~L~~L~L~~~~it 119 (240)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777777654
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.65 E-value=0.28 Score=36.31 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=44.1
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
..|++|+.+.++.. +..-+ ......+++|+.+.+... +..-.- .....|++|+.+.+..+ +.. +...
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~-~~~F~~~~~l~~i~~~~~--~~~i~~-~~F~~~~~l~~i~~~~~-~~~----i~~~--- 75 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIG-ENAFSNCTSLKSINFPNN--LTSIGD-NAFSNCKSLESITFPNN-LKS----IGDN--- 75 (129)
T ss_dssp TT-TT--EEEETST---EE--TTTTTT-TT-SEEEESST--TSCE-T-TTTTT-TT-EEEEETST-T-E----E-TT---
T ss_pred hCCCCCCEEEECCC-eeEeC-hhhccccccccccccccc--ccccce-eeeeccccccccccccc-ccc----cccc---
Confidence 35778888888753 22111 112235778888888762 332111 22345677888888432 100 1111
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~ 140 (240)
....+++|+.+.+..+ ++.-+.. ...+| .|+.+.+..
T Consensus 76 -~F~~~~~l~~i~~~~~-~~~i~~~-~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 -AFSNCTNLKNIDIPSN-ITEIGSS-SFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTTT-TTECEEEETTT--BEEHTT-TTTT--T--EEE-TT
T ss_pred -cccccccccccccCcc-ccEEchh-hhcCC-CceEEEECC
Confidence 1125678888888654 2211111 23456 777777754
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.64 E-value=0.66 Score=43.91 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHH---------------------HHHHHHhcCCCCcEEEEe
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP---------------------ALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~---------------------~l~~l~~~c~~L~~L~L~ 82 (240)
-|+.|-+++|+++-- -..+. ..+.|..|+.+.|...+-. ....++ +=.|..|+++
T Consensus 144 pLkvli~sNNkl~~l-p~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSL-PEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFS 219 (722)
T ss_pred cceeEEEecCccccC-Ccccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecc
Confidence 488888888866430 01111 3555666666665322210 112222 2247778888
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcC-CcccEEeccCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCW 142 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c-~~Le~LdL~~C~ 142 (240)
+|.+.+. ..-...|+.|++|.|-+|.++.--.....++- +=.++|+..-|.
T Consensus 220 cNkis~i---------Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKISYL---------PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCceeec---------chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 7755322 12234789999999999997765554444443 345888888883
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.76 E-value=3.7 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=10.8
Q ss_pred CCCCEEEeeCcccC
Q 026286 106 PKLKRLEMAYHVIS 119 (240)
Q Consensus 106 ~~L~~L~L~~~~it 119 (240)
.+|+.|.|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888888888774
No 90
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=56.74 E-value=9.5 Score=38.24 Aligned_cols=18 Identities=11% Similarity=0.442 Sum_probs=9.4
Q ss_pred HHHhcCCCCCEEEeeCcc
Q 026286 100 AIASTMPKLKRLEMAYHV 117 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~ 117 (240)
.+..+.|.|-.=.+.+|.
T Consensus 1294 ~lLh~VP~Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1294 KLLHSVPSLDQCAVTFNS 1311 (1516)
T ss_pred HHHhcCccccceEEEecc
Confidence 344455666555555544
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=46.13 E-value=12 Score=20.23 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=9.8
Q ss_pred CCCCEEEeeCcccC
Q 026286 106 PKLKRLEMAYHVIS 119 (240)
Q Consensus 106 ~~L~~L~L~~~~it 119 (240)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 45777777777765
No 92
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=40.82 E-value=19 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=11.1
Q ss_pred cccchhcHHHHHhCCCCCcEEEeeC
Q 026286 8 FLCADVDLFPGSASAGSLQTLRLPR 32 (240)
Q Consensus 8 ~~~tD~~L~~i~~~~~~L~~L~L~~ 32 (240)
|+-|+..+..+.++||+|+.+.++.
T Consensus 26 FRPSN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 26 FRPSNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred ecCcchHHHHHHHhCCCCeEEeCCh
Confidence 3334444444444444444444444
No 93
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=31.04 E-value=34 Score=18.42 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHhcCCcccEEeccC
Q 026286 125 KILSSCALLEFLDLRG 140 (240)
Q Consensus 125 ~l~~~c~~Le~LdL~~ 140 (240)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3455678888887643
No 94
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=29.17 E-value=1.4e+02 Score=19.22 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=34.8
Q ss_pred CCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHH-----hcCCCCcEEEE
Q 026286 22 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG-----KHCKLLVVLCR 81 (240)
Q Consensus 22 ~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~-----~~c~~L~~L~L 81 (240)
+.+++.|.+... .++-..+..+ +-+.+.+.. ..+|.+.+..+. ...|+|+.|.+
T Consensus 10 ~~~~~~l~i~~~~~it~~~Ll~~-----nc~~i~l~~-~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 10 PRNLEKLSISSSNWITLDDLLNM-----NCKKIELWN-SKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred hCCCCEEEEccCCcccHHHHHhc-----CCCEEEEEC-CCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 357788888865 6776554433 345666665 457877665443 35688998876
No 95
>PHA02811 putative host range protein; Provisional
Probab=28.77 E-value=32 Score=27.86 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=7.9
Q ss_pred CCcccCCCCCCCCCC
Q 026286 166 MDYYEINDWDDCSDY 180 (240)
Q Consensus 166 ~~~~~~~~~~~~~~~ 180 (240)
.+|+..+..++|..+
T Consensus 156 ~~y~~~~~~d~~~~~ 170 (197)
T PHA02811 156 DDYYLYDACDYCIIS 170 (197)
T ss_pred cccccccccceeeec
Confidence 455555555556443
No 96
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=25.80 E-value=41 Score=33.21 Aligned_cols=8 Identities=25% Similarity=1.016 Sum_probs=5.2
Q ss_pred CcccCCCC
Q 026286 167 DYYEINDW 174 (240)
Q Consensus 167 ~~~~~~~~ 174 (240)
.|+....|
T Consensus 861 ~Ffe~GgW 868 (960)
T KOG1189|consen 861 AFFEDGGW 868 (960)
T ss_pred HHHhcCCe
Confidence 56666666
No 97
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=25.48 E-value=59 Score=31.56 Aligned_cols=8 Identities=25% Similarity=1.049 Sum_probs=4.4
Q ss_pred CcccCCCC
Q 026286 167 DYYEINDW 174 (240)
Q Consensus 167 ~~~~~~~~ 174 (240)
.|+....|
T Consensus 913 ~FfedGgW 920 (1001)
T COG5406 913 SFFEDGGW 920 (1001)
T ss_pred HHhhcCcc
Confidence 45555556
No 98
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=24.69 E-value=39 Score=33.35 Aligned_cols=6 Identities=33% Similarity=0.434 Sum_probs=2.4
Q ss_pred CCcEEE
Q 026286 24 SLQTLR 29 (240)
Q Consensus 24 ~L~~L~ 29 (240)
+|+.|.
T Consensus 607 ~L~dly 612 (960)
T KOG1189|consen 607 KLKDLY 612 (960)
T ss_pred chhheE
Confidence 444433
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=23.11 E-value=79 Score=29.69 Aligned_cols=137 Identities=15% Similarity=-0.044 Sum_probs=66.6
Q ss_pred cccccchhcHHHHHhC--CCCCcEEEeeCCCCCH--HHHHHHHhcCccCcEEEecCCCCCC-HHHHHHHHhc-CCCCcEE
Q 026286 6 LDFLCADVDLFPGSAS--AGSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIG-APALEAIGKH-CKLLVVL 79 (240)
Q Consensus 6 ~~~~~tD~~L~~i~~~--~~~L~~L~L~~~~itd--~~l~~l~~~~~~L~~L~Ls~c~~it-~~~l~~l~~~-c~~L~~L 79 (240)
.-|..++..+..+... -..++.+.|+.+..-+ .+...+...-.-|+.++.+. +.++ +.....++.. -.+|...
T Consensus 195 r~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~-tgirlD~l~~~l~~g~~tkl~~~ 273 (553)
T KOG4242|consen 195 RVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRST-TGIRLDLLTSPLAAGRTTKLTFG 273 (553)
T ss_pred hhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccc-cccchhhcccccccccccccchh
Confidence 3444555555444322 2256677777763322 12233332344467777766 3333 2333333332 2467777
Q ss_pred EEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCC----c-ccEEeccCCCCC
Q 026286 80 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCA----L-LEFLDLRGCWDV 144 (240)
Q Consensus 80 ~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~----~-Le~LdL~~C~~v 144 (240)
+++.++....-..-.........+.-+++ +|++.+++...+.+..++-..- . =-.+|++.|..-
T Consensus 274 kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~ 342 (553)
T KOG4242|consen 274 KLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLE 342 (553)
T ss_pred hhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccc
Confidence 77655432211000011111222233677 8898888888877777653321 1 135666666655
No 100
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=23.07 E-value=43 Score=33.65 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=6.0
Q ss_pred CcccEEeccCC
Q 026286 131 ALLEFLDLRGC 141 (240)
Q Consensus 131 ~~Le~LdL~~C 141 (240)
+.|+.+.+.|.
T Consensus 842 krLq~V~VkGe 852 (1005)
T KOG2274|consen 842 KRLQKVRVKGE 852 (1005)
T ss_pred hhhceeeECCe
Confidence 45566655543
No 101
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.48 E-value=1.9e+02 Score=21.92 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.5
Q ss_pred HHHHHhcCCCCcEEEE
Q 026286 66 LEAIGKHCKLLVVLCR 81 (240)
Q Consensus 66 l~~l~~~c~~L~~L~L 81 (240)
+..+.+.||+|+.+.+
T Consensus 33 if~Lv~~CP~lk~iqi 48 (131)
T PF08004_consen 33 IFSLVERCPNLKAIQI 48 (131)
T ss_pred HHHHHHhCCCCeEEeC
Confidence 3333344444444443
No 102
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.11 E-value=1.1e+02 Score=29.98 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=12.3
Q ss_pred HHHhcCCCCccccCCCCCcccCC--CCCC
Q 026286 150 FMKGNFPNLKVLGPFVMDYYEIN--DWDD 176 (240)
Q Consensus 150 ~l~~~~~~L~~L~~~~~~~~~~~--~~~~ 176 (240)
.|..++|--+. ...||.+.+ +|++
T Consensus 504 ~VsarrPlAq~---~llDYEVdSDeEWEE 529 (811)
T KOG4364|consen 504 VVSARRPLAQD---PLLDYEVDSDEEWEE 529 (811)
T ss_pred ccccCCccccc---ccccccccCcccccc
Confidence 45566664431 112666665 5744
Done!