Query 026286
Match_columns 240
No_of_seqs 315 out of 1602
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ca6_A RAN GTPase-activating p 99.7 3.6E-17 1.2E-21 145.0 13.9 132 3-142 127-285 (386)
2 2ca6_A RAN GTPase-activating p 99.7 8.3E-17 2.8E-21 142.6 13.7 134 3-144 164-316 (386)
3 2ast_B S-phase kinase-associat 99.7 1.6E-16 5.6E-21 137.6 14.4 155 2-163 97-254 (336)
4 2ast_B S-phase kinase-associat 99.7 4.7E-16 1.6E-20 134.7 12.1 153 2-163 122-279 (336)
5 3ogk_B Coronatine-insensitive 99.6 1.4E-14 4.7E-19 134.4 17.0 150 10-163 329-520 (592)
6 3ogk_B Coronatine-insensitive 99.6 7E-15 2.4E-19 136.4 14.2 144 10-161 390-543 (592)
7 2p1m_B Transport inhibitor res 99.6 6.8E-15 2.3E-19 136.4 13.6 143 10-163 359-513 (594)
8 2p1m_B Transport inhibitor res 99.6 7.9E-15 2.7E-19 136.0 13.5 145 6-160 380-535 (594)
9 3e4g_A ATP synthase subunit S, 99.6 6.7E-15 2.3E-19 117.3 7.6 103 49-160 62-171 (176)
10 3e4g_A ATP synthase subunit S, 99.5 3.2E-14 1.1E-18 113.4 9.1 106 22-135 60-171 (176)
11 1io0_A Tropomodulin; LRR prote 99.5 4.3E-13 1.5E-17 107.6 13.6 124 12-143 25-163 (185)
12 3un9_A NLR family member X1; l 99.5 1.5E-13 5.3E-18 121.9 11.3 132 3-142 77-222 (372)
13 3un9_A NLR family member X1; l 99.5 9.5E-14 3.3E-18 123.2 9.2 134 2-143 105-251 (372)
14 1z7x_W Ribonuclease inhibitor; 99.4 3.3E-12 1.1E-16 114.8 13.0 133 2-142 7-153 (461)
15 1z7x_W Ribonuclease inhibitor; 99.3 1.1E-11 3.9E-16 111.3 12.8 39 104-142 339-381 (461)
16 2je0_A Acidic leucine-rich nuc 99.2 1.1E-12 3.7E-17 100.8 1.5 132 20-163 14-147 (149)
17 1io0_A Tropomodulin; LRR prote 99.2 7E-11 2.4E-15 94.6 10.5 113 2-122 40-167 (185)
18 2je0_A Acidic leucine-rich nuc 99.2 3.8E-12 1.3E-16 97.7 2.2 127 2-140 21-149 (149)
19 2ell_A Acidic leucine-rich nuc 99.2 3.7E-12 1.3E-16 99.7 2.0 133 20-164 21-155 (168)
20 3goz_A Leucine-rich repeat-con 99.2 3.9E-11 1.3E-15 105.4 8.7 36 107-142 168-207 (362)
21 3goz_A Leucine-rich repeat-con 99.2 5.4E-11 1.8E-15 104.4 9.3 155 2-164 26-204 (362)
22 2ell_A Acidic leucine-rich nuc 99.2 2.2E-12 7.6E-17 101.0 -0.2 131 2-144 28-160 (168)
23 1pgv_A TMD-1, tropomodulin TMD 99.2 3.1E-10 1.1E-14 91.9 12.2 124 11-142 29-168 (197)
24 2ra8_A Uncharacterized protein 99.1 3.1E-10 1.1E-14 100.3 9.6 121 14-141 163-289 (362)
25 4ezg_A Putative uncharacterize 99.1 4.2E-11 1.4E-15 96.3 3.7 125 21-163 42-166 (197)
26 4ezg_A Putative uncharacterize 99.0 7.3E-11 2.5E-15 94.9 2.3 139 3-163 49-188 (197)
27 4fmz_A Internalin; leucine ric 98.9 5.1E-09 1.7E-13 90.7 9.1 122 21-163 219-340 (347)
28 1a9n_A U2A', U2A'; complex (nu 98.9 3E-10 1E-14 89.6 1.1 129 21-163 17-147 (176)
29 1pgv_A TMD-1, tropomodulin TMD 98.9 1.4E-08 4.9E-13 82.1 10.9 120 37-163 30-164 (197)
30 2ra8_A Uncharacterized protein 98.9 5.4E-09 1.8E-13 92.3 8.8 119 22-150 192-323 (362)
31 4fcg_A Uncharacterized protein 98.9 7.8E-11 2.7E-15 102.3 -3.1 60 21-85 102-161 (328)
32 1h6u_A Internalin H; cell adhe 98.8 3.6E-09 1.2E-13 90.9 6.9 15 22-36 62-76 (308)
33 1ds9_A Outer arm dynein; leuci 98.8 6.9E-11 2.3E-15 95.1 -3.8 129 19-163 44-181 (198)
34 1wwl_A Monocyte differentiatio 98.8 6.9E-10 2.4E-14 95.4 2.2 65 21-86 93-161 (312)
35 4fcg_A Uncharacterized protein 98.8 2.6E-10 8.9E-15 99.0 -1.0 128 21-163 125-260 (328)
36 4glp_A Monocyte differentiatio 98.8 7.7E-10 2.6E-14 94.9 1.2 131 3-143 69-209 (310)
37 4fmz_A Internalin; leucine ric 98.8 3.5E-09 1.2E-13 91.7 5.4 120 3-143 226-345 (347)
38 4glp_A Monocyte differentiatio 98.8 1.4E-09 4.9E-14 93.2 2.5 150 3-163 96-258 (310)
39 1h6t_A Internalin B; cell adhe 98.8 4.6E-09 1.6E-13 89.6 5.2 58 21-85 66-123 (291)
40 3m19_A Variable lymphocyte rec 98.8 1.9E-10 6.5E-15 95.8 -3.5 130 21-163 57-186 (251)
41 1h6t_A Internalin B; cell adhe 98.8 9.3E-09 3.2E-13 87.6 6.9 135 3-163 73-207 (291)
42 1wwl_A Monocyte differentiatio 98.8 4.4E-10 1.5E-14 96.6 -1.5 153 3-164 100-261 (312)
43 2z7x_B TOLL-like receptor 1, v 98.8 1.4E-09 4.8E-14 99.4 1.5 64 21-86 322-386 (520)
44 3rfs_A Internalin B, repeat mo 98.8 4.2E-10 1.4E-14 94.9 -1.9 61 21-86 61-121 (272)
45 1ozn_A Reticulon 4 receptor; N 98.8 1.6E-10 5.5E-15 97.8 -4.6 37 21-58 54-90 (285)
46 1a9n_A U2A', U2A'; complex (nu 98.7 9.3E-10 3.2E-14 86.8 -0.3 128 3-144 24-153 (176)
47 1ozn_A Reticulon 4 receptor; N 98.7 4.9E-10 1.7E-14 94.8 -2.4 58 104-163 175-232 (285)
48 1m9s_A Internalin B; cell inva 98.7 8.8E-09 3E-13 96.8 5.2 54 104-163 151-204 (605)
49 3v47_A TOLL-like receptor 5B a 98.7 3.8E-10 1.3E-14 101.2 -4.0 144 10-163 17-161 (455)
50 1h6u_A Internalin H; cell adhe 98.7 1.4E-08 4.8E-13 87.2 5.8 74 3-86 68-141 (308)
51 2z80_A TOLL-like receptor 2, v 98.7 6.4E-09 2.2E-13 90.6 3.6 62 21-84 98-159 (353)
52 2o6q_A Variable lymphocyte rec 98.7 4.8E-10 1.6E-14 94.4 -3.6 62 21-85 59-120 (270)
53 3rfs_A Internalin B, repeat mo 98.7 1.3E-09 4.4E-14 91.9 -1.1 130 21-163 83-212 (272)
54 1xeu_A Internalin C; cellular 98.7 6.3E-09 2.1E-13 87.5 3.0 54 104-163 126-179 (263)
55 2z62_A TOLL-like receptor 4, v 98.7 6.8E-10 2.3E-14 93.4 -3.0 41 104-144 122-162 (276)
56 2z66_A Variable lymphocyte rec 98.7 1E-10 3.6E-15 99.8 -8.1 114 21-144 99-212 (306)
57 1m9s_A Internalin B; cell inva 98.7 1.9E-08 6.4E-13 94.5 6.5 136 3-164 48-183 (605)
58 2o6s_A Variable lymphocyte rec 98.7 7.2E-10 2.5E-14 89.5 -3.1 129 22-163 27-155 (208)
59 2o6q_A Variable lymphocyte rec 98.7 7E-10 2.4E-14 93.3 -3.4 132 20-164 82-213 (270)
60 3e6j_A Variable lymphocyte rec 98.7 1.3E-09 4.5E-14 89.7 -2.0 140 10-163 26-166 (229)
61 2id5_A Lingo-1, leucine rich r 98.6 1.1E-09 3.6E-14 99.2 -3.7 36 21-57 54-89 (477)
62 3rgz_A Protein brassinosteroid 98.6 2.1E-09 7.3E-14 103.3 -2.0 63 21-84 124-188 (768)
63 2o6s_A Variable lymphocyte rec 98.6 2.2E-09 7.6E-14 86.6 -1.8 129 3-144 33-161 (208)
64 1ds9_A Outer arm dynein; leuci 98.6 1.5E-08 5.2E-13 81.2 3.0 120 3-138 53-181 (198)
65 2z81_A CD282 antigen, TOLL-lik 98.6 6.4E-08 2.2E-12 88.7 7.4 66 20-86 331-399 (549)
66 1p9a_G Platelet glycoprotein I 98.6 1.2E-09 4.3E-14 93.1 -3.8 60 21-86 53-112 (290)
67 3v47_A TOLL-like receptor 5B a 98.6 1.7E-09 5.8E-14 97.0 -3.3 133 3-145 35-168 (455)
68 1o6v_A Internalin A; bacterial 98.6 4.5E-08 1.6E-12 88.5 6.0 54 104-163 329-382 (466)
69 1xeu_A Internalin C; cellular 98.6 1.7E-08 5.7E-13 84.9 2.8 120 21-164 39-158 (263)
70 3o53_A Protein LRIM1, AGAP0063 98.6 4.3E-09 1.5E-13 90.6 -0.9 109 22-144 119-227 (317)
71 2v9t_B SLIT homolog 2 protein 98.6 4.7E-09 1.6E-13 85.9 -0.9 128 23-163 32-159 (220)
72 2id5_A Lingo-1, leucine rich r 98.6 2.3E-09 7.9E-14 97.0 -3.1 129 3-144 61-189 (477)
73 3e6j_A Variable lymphocyte rec 98.6 7.5E-09 2.6E-13 85.1 -0.1 128 3-144 45-172 (229)
74 2v9t_B SLIT homolog 2 protein 98.5 1.4E-09 4.9E-14 89.0 -4.6 113 20-144 53-165 (220)
75 1o6v_A Internalin A; bacterial 98.5 8.3E-08 2.8E-12 86.7 6.5 55 103-163 306-360 (466)
76 1dce_A Protein (RAB geranylger 98.5 7.3E-09 2.5E-13 96.6 -0.6 124 23-162 441-566 (567)
77 4g8a_A TOLL-like receptor 4; l 98.5 1.2E-09 4.3E-14 101.1 -5.7 143 9-163 37-180 (635)
78 3zyj_A Leucine-rich repeat-con 98.5 3.4E-09 1.2E-13 95.2 -2.8 37 21-58 110-146 (440)
79 2v70_A SLIT-2, SLIT homolog 2 98.5 1.9E-09 6.6E-14 88.2 -4.0 129 23-163 32-160 (220)
80 2z7x_B TOLL-like receptor 1, v 98.5 2.1E-08 7.1E-13 91.5 2.4 145 3-163 329-475 (520)
81 3zyi_A Leucine-rich repeat-con 98.5 5E-09 1.7E-13 94.4 -1.8 58 104-163 240-297 (452)
82 3rgz_A Protein brassinosteroid 98.5 1.6E-08 5.3E-13 97.2 1.2 128 3-144 131-260 (768)
83 2v70_A SLIT-2, SLIT homolog 2 98.5 1.3E-09 4.5E-14 89.2 -5.5 114 19-144 53-166 (220)
84 3oja_A Leucine-rich immune mol 98.5 9.3E-09 3.2E-13 94.0 -0.5 109 22-144 119-227 (487)
85 3m19_A Variable lymphocyte rec 98.5 2.9E-09 9.8E-14 88.6 -3.7 129 3-144 64-192 (251)
86 3vq2_A TLR4, TOLL-like recepto 98.5 9.6E-10 3.3E-14 102.2 -7.4 57 104-163 495-552 (606)
87 3t6q_A CD180 antigen; protein- 98.5 1.3E-09 4.6E-14 101.2 -6.5 37 21-58 299-335 (606)
88 2z66_A Variable lymphocyte rec 98.5 1.4E-09 4.7E-14 92.8 -6.5 131 21-163 76-206 (306)
89 3t6q_A CD180 antigen; protein- 98.5 4E-09 1.4E-13 98.1 -4.0 63 21-85 398-460 (606)
90 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 8.1E-09 2.8E-13 95.5 -2.0 65 20-86 350-415 (562)
91 2z80_A TOLL-like receptor 2, v 98.5 3.2E-09 1.1E-13 92.5 -4.6 81 3-87 57-137 (353)
92 2z63_A TOLL-like receptor 4, v 98.5 9.3E-09 3.2E-13 94.6 -1.9 41 104-144 122-162 (570)
93 4eco_A Uncharacterized protein 98.5 2.6E-08 8.8E-13 93.8 0.8 110 45-163 203-337 (636)
94 3zyi_A Leucine-rich repeat-con 98.5 5E-09 1.7E-13 94.4 -4.0 62 21-85 97-158 (452)
95 1ogq_A PGIP-2, polygalacturona 98.5 1.4E-09 4.8E-14 93.6 -7.4 37 21-58 99-135 (313)
96 1xku_A Decorin; proteoglycan, 98.5 5.3E-08 1.8E-12 83.8 2.5 57 104-163 214-270 (330)
97 2z62_A TOLL-like receptor 4, v 98.4 2.4E-09 8.1E-14 90.1 -6.1 144 8-164 12-157 (276)
98 3vq2_A TLR4, TOLL-like recepto 98.4 1.1E-08 3.9E-13 94.9 -2.2 40 104-143 126-165 (606)
99 1ziw_A TOLL-like receptor 3; i 98.4 1E-08 3.5E-13 96.6 -2.7 131 21-163 47-178 (680)
100 3zyj_A Leucine-rich repeat-con 98.4 6.6E-09 2.3E-13 93.3 -4.1 63 21-86 86-148 (440)
101 3o6n_A APL1; leucine-rich repe 98.4 6.4E-08 2.2E-12 85.3 2.2 121 23-163 226-346 (390)
102 1xku_A Decorin; proteoglycan, 98.4 2.1E-08 7.3E-13 86.3 -0.9 61 23-86 52-112 (330)
103 2xot_A Amphoterin-induced prot 98.4 8.4E-09 2.9E-13 90.5 -3.6 116 21-147 62-179 (361)
104 3j0a_A TOLL-like receptor 5; m 98.4 2.3E-09 7.8E-14 104.1 -7.9 60 104-163 121-181 (844)
105 2z81_A CD282 antigen, TOLL-lik 98.4 5.5E-07 1.9E-11 82.5 8.4 113 21-144 308-423 (549)
106 1p9a_G Platelet glycoprotein I 98.4 1.6E-08 5.6E-13 86.1 -2.0 119 9-142 16-135 (290)
107 2z63_A TOLL-like receptor 4, v 98.4 2.5E-09 8.6E-14 98.4 -7.7 149 3-164 378-526 (570)
108 3o6n_A APL1; leucine-rich repe 98.4 1.2E-08 4.1E-13 89.9 -3.2 137 3-162 231-367 (390)
109 1ogq_A PGIP-2, polygalacturona 98.4 6.3E-09 2.2E-13 89.5 -5.1 110 23-143 50-161 (313)
110 2xot_A Amphoterin-induced prot 98.4 9.2E-09 3.2E-13 90.2 -4.1 143 10-163 25-170 (361)
111 4g8a_A TOLL-like receptor 4; l 98.4 8.1E-09 2.8E-13 95.7 -4.9 115 20-145 73-187 (635)
112 1dce_A Protein (RAB geranylger 98.4 3.5E-08 1.2E-12 92.0 -0.6 120 3-138 446-567 (567)
113 3oja_B Anopheles plasmodium-re 98.4 6.9E-08 2.3E-12 90.1 1.1 127 20-162 72-198 (597)
114 2wfh_A SLIT homolog 2 protein 98.4 2.9E-08 1E-12 79.6 -1.5 110 22-144 30-139 (193)
115 3o53_A Protein LRIM1, AGAP0063 98.4 3.4E-08 1.2E-12 84.9 -1.2 126 3-144 125-250 (317)
116 3bz5_A Internalin-J, INLJ; leu 98.3 2.1E-07 7.1E-12 84.3 3.7 100 21-144 62-161 (457)
117 4ecn_A Leucine-rich repeat pro 98.3 8.9E-08 3E-12 93.4 1.3 130 21-163 489-626 (876)
118 3oja_A Leucine-rich immune mol 98.3 9.9E-09 3.4E-13 93.8 -5.3 126 3-144 125-250 (487)
119 1w8a_A SLIT protein; signaling 98.3 8.4E-09 2.9E-13 82.5 -5.2 112 22-144 28-139 (192)
120 2o6r_A Variable lymphocyte rec 98.3 2.4E-08 8.2E-13 78.5 -2.5 111 22-144 27-137 (177)
121 3j0a_A TOLL-like receptor 5; m 98.3 6.1E-09 2.1E-13 101.1 -7.4 40 104-143 95-135 (844)
122 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 6.1E-08 2.1E-12 89.6 -1.1 128 21-163 375-504 (562)
123 3oja_B Anopheles plasmodium-re 98.3 3.4E-08 1.2E-12 92.2 -3.2 106 23-144 232-337 (597)
124 4ecn_A Leucine-rich repeat pro 98.3 1.5E-07 5.2E-12 91.8 1.1 126 3-144 496-632 (876)
125 2xwt_C Thyrotropin receptor; s 98.3 1.8E-08 6.1E-13 82.9 -4.7 127 23-163 31-163 (239)
126 1ziw_A TOLL-like receptor 3; i 98.3 2.3E-08 7.7E-13 94.3 -4.7 15 21-35 403-417 (680)
127 3bz5_A Internalin-J, INLJ; leu 98.3 5.9E-07 2E-11 81.4 4.7 34 21-58 104-137 (457)
128 2xwt_C Thyrotropin receptor; s 98.3 2E-08 7E-13 82.6 -4.7 112 20-144 52-169 (239)
129 4eco_A Uncharacterized protein 98.2 8.2E-08 2.8E-12 90.4 -2.4 36 104-141 511-546 (636)
130 4b8c_D Glucose-repressible alc 98.1 3.2E-07 1.1E-11 87.9 -0.5 110 19-144 220-329 (727)
131 2ft3_A Biglycan; proteoglycan, 98.1 5E-07 1.7E-11 77.8 -0.1 107 22-143 53-159 (332)
132 3rw6_A Nuclear RNA export fact 98.0 3.8E-06 1.3E-10 70.9 5.1 87 70-163 166-258 (267)
133 2ft3_A Biglycan; proteoglycan, 98.0 8.8E-08 3E-12 82.6 -5.4 129 22-163 192-327 (332)
134 1w8a_A SLIT protein; signaling 98.0 6.8E-08 2.3E-12 77.2 -5.9 124 25-163 10-133 (192)
135 3g06_A SSPH2 (leucine-rich rep 98.0 2.3E-06 7.9E-11 80.6 3.6 77 48-144 221-297 (622)
136 2o6r_A Variable lymphocyte rec 98.0 3.8E-07 1.3E-11 71.4 -1.5 124 24-163 8-131 (177)
137 3g06_A SSPH2 (leucine-rich rep 98.0 5.1E-06 1.7E-10 78.2 5.2 72 73-163 220-291 (622)
138 3rw6_A Nuclear RNA export fact 97.9 6.7E-06 2.3E-10 69.5 4.0 90 40-138 162-258 (267)
139 2wfh_A SLIT homolog 2 protein 97.9 1.2E-06 4.2E-11 70.0 -0.6 122 26-164 13-134 (193)
140 3cvr_A Invasion plasmid antige 97.9 2.7E-06 9.1E-11 79.3 1.6 33 109-143 210-242 (571)
141 3cvr_A Invasion plasmid antige 97.9 2.3E-06 7.9E-11 79.8 1.0 113 24-163 121-237 (571)
142 4b8c_D Glucose-repressible alc 97.8 1E-06 3.4E-11 84.4 -3.0 102 3-120 229-330 (727)
143 1jl5_A Outer protein YOPM; leu 97.7 2.2E-05 7.6E-10 70.9 3.9 32 24-58 132-163 (454)
144 3sb4_A Hypothetical leucine ri 97.7 6.5E-06 2.2E-10 70.9 0.4 90 61-162 213-303 (329)
145 3g39_A Variable lymphocyte rec 97.7 1.2E-06 4.1E-11 68.6 -4.0 106 24-144 10-115 (170)
146 3g39_A Variable lymphocyte rec 97.7 3.3E-06 1.1E-10 66.0 -1.6 87 22-119 29-115 (170)
147 2r9u_A Variable lymphocyte rec 97.6 5.1E-06 1.7E-10 65.3 -1.6 105 25-144 14-118 (174)
148 1jl5_A Outer protein YOPM; leu 97.5 7.4E-05 2.5E-09 67.4 4.7 72 3-86 136-207 (454)
149 2r9u_A Variable lymphocyte rec 97.5 3.1E-05 1.1E-09 60.7 1.4 87 22-119 32-118 (174)
150 2ifg_A High affinity nerve gro 97.3 1.5E-05 5.2E-10 68.8 -2.3 63 21-86 29-92 (347)
151 3sb4_A Hypothetical leucine ri 97.3 7E-06 2.4E-10 70.7 -4.7 126 22-162 201-327 (329)
152 4ay9_X Follicle-stimulating ho 97.2 4.7E-06 1.6E-10 72.4 -6.2 50 8-59 14-65 (350)
153 4ay9_X Follicle-stimulating ho 96.9 9.2E-06 3.1E-10 70.6 -7.7 65 21-86 102-166 (350)
154 2ifg_A High affinity nerve gro 96.7 0.00048 1.7E-08 59.2 1.7 105 26-144 11-116 (347)
155 4fdw_A Leucine rich hypothetic 95.4 0.00046 1.6E-08 61.3 -5.0 58 104-163 269-330 (401)
156 4fdw_A Leucine rich hypothetic 93.2 0.003 1E-07 56.0 -4.7 58 20-82 177-234 (401)
157 4gt6_A Cell surface protein; l 90.7 0.021 7.2E-07 49.9 -2.2 103 21-141 263-367 (394)
158 4gt6_A Cell surface protein; l 89.3 0.029 9.9E-07 49.0 -2.5 101 20-140 285-387 (394)
159 4fs7_A Uncharacterized protein 88.7 0.0083 2.8E-07 52.5 -6.5 122 20-163 250-373 (394)
160 4h09_A Hypothetical leucine ri 88.4 0.024 8.1E-07 49.1 -3.6 123 21-163 215-340 (379)
161 4h09_A Hypothetical leucine ri 83.1 0.044 1.5E-06 47.4 -4.7 102 20-140 237-342 (379)
162 4fs7_A Uncharacterized protein 82.8 0.055 1.9E-06 47.2 -4.2 121 20-161 273-393 (394)
163 3rfe_A Platelet glycoprotein I 81.5 0.32 1.1E-05 35.7 0.3 14 104-117 53-66 (130)
164 3rfe_A Platelet glycoprotein I 77.7 0.21 7.1E-06 36.8 -1.9 36 49-86 32-67 (130)
165 4fp9_B Mterf domain-containing 43.5 4.9 0.00017 34.5 0.0 44 8-51 56-106 (335)
166 2lz0_A Uncharacterized protein 20.9 38 0.0013 23.2 1.4 13 21-33 18-30 (100)
No 1
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=3.6e-17 Score=144.97 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=67.5
Q ss_pred ccccccccchhcHHHHHhCC------------CCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHH
Q 026286 3 LCLLDFLCADVDLFPGSASA------------GSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALE 67 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~------------~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~ 67 (240)
|.|.++.+++.+...++... ++|++|+|++|.+++.++..++ ..+++|+.|+|++| .++..++.
T Consensus 127 L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~ 205 (386)
T 2ca6_A 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIE 205 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHH
T ss_pred EECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHH
Confidence 45555555555444443322 5666666666666554444322 24566666666664 45555544
Q ss_pred HHHh----cCCCCcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHHhc-----CCcccE
Q 026286 68 AIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS-----CALLEF 135 (240)
Q Consensus 68 ~l~~----~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~~~-----c~~Le~ 135 (240)
++.. .+++|+.|.|+.|.+ ++.++..++ ..+++|++|+|++|.|++.+...+... +++|++
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~l-------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNTF-------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCC-------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred HHHHHHhhcCCCccEEECcCCCC-------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 3332 456666666655432 333333222 344556666666666655544433321 555666
Q ss_pred EeccCCC
Q 026286 136 LDLRGCW 142 (240)
Q Consensus 136 LdL~~C~ 142 (240)
|+|++|.
T Consensus 279 L~L~~n~ 285 (386)
T 2ca6_A 279 LRLQYNE 285 (386)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 6665554
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=8.3e-17 Score=142.63 Aligned_cols=134 Identities=17% Similarity=0.085 Sum_probs=83.2
Q ss_pred ccccccccchhcHHHHHh---CCCCCcEEEeeCCCCCHHHHHHHHh----cCccCcEEEecCCCCCCHHHHHHH---Hhc
Q 026286 3 LCLLDFLCADVDLFPGSA---SAGSLQTLRLPRSEMSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEAI---GKH 72 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~---~~~~L~~L~L~~~~itd~~l~~l~~----~~~~L~~L~Ls~c~~it~~~l~~l---~~~ 72 (240)
|.+.++.+++.++..++. .+++|++|+|++|.|++.++..++. .+++|+.|+|++| .++..+...+ ...
T Consensus 164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKS 242 (386)
T ss_dssp EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGG
T ss_pred EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHcc
Confidence 456666666666665443 5677777777777777766555544 5677777777775 4665444333 245
Q ss_pred CCCCcEEEEeeccCCCCCccCChHHHHHHHhc-----CCCCCEEEeeCcccCHHHHHHHH----hcCCcccEEeccCCCC
Q 026286 73 CKLLVVLCRNMHPLDTADKLSQDDEANAIAST-----MPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCWD 143 (240)
Q Consensus 73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~-----~~~L~~L~L~~~~it~~~l~~l~----~~c~~Le~LdL~~C~~ 143 (240)
+++|+.|.|+.|. +++.++.+++.. +++|++|+|++|.|+..++..+. .++|+|++|+|++|..
T Consensus 243 ~~~L~~L~L~~n~-------i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 243 WPNLRELGLNDCL-------LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CTTCCEEECTTCC-------CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCCcCEEECCCCC-------CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 6777777776553 345555544432 57777777777777775444332 3467777777777765
Q ss_pred C
Q 026286 144 V 144 (240)
Q Consensus 144 v 144 (240)
.
T Consensus 316 ~ 316 (386)
T 2ca6_A 316 S 316 (386)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.6e-16 Score=137.56 Aligned_cols=155 Identities=21% Similarity=0.169 Sum_probs=123.0
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 81 (240)
.|.+.++.+++.++..+..++++|++|+|++|.+++.....++ .+++|++|+|++|..+++.++..+...|++|+.|.+
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 3677788888887888888899999999999999888777776 589999999999877888888887788999999999
Q ss_pred eeccCCCCCccCChHHHHHHHhcCC-CCCEEEeeCc--ccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCC
Q 026286 82 NMHPLDTADKLSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 158 (240)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~i~~~~~-~L~~L~L~~~--~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L 158 (240)
+.+. .+++.++..+...+| +|++|+|++| .+++.++..++.+||+|+.|+|++|..++.........+++|
T Consensus 176 ~~~~------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 176 SWCF------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCCT------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCCC------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 7651 235566667777888 9999999999 588888888888899999999999986622211122566788
Q ss_pred ccccC
Q 026286 159 KVLGP 163 (240)
Q Consensus 159 ~~L~~ 163 (240)
+.|..
T Consensus 250 ~~L~l 254 (336)
T 2ast_B 250 QHLSL 254 (336)
T ss_dssp CEEEC
T ss_pred CEeeC
Confidence 87776
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=4.7e-16 Score=134.66 Aligned_cols=153 Identities=19% Similarity=0.259 Sum_probs=126.1
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCC-CCcEE
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK-LLVVL 79 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~-~L~~L 79 (240)
.|.+.++.+++.....++. +++|++|+|++| .+++.++..++..+++|+.|+|++|..+++.++..+...+| +|+.|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 3678888889888888874 899999999999 89999899988899999999999986799888888778899 99999
Q ss_pred EEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCC
Q 026286 80 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFP 156 (240)
Q Consensus 80 ~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~ 156 (240)
.++.+.. .+++..+..+...+|+|++|+|++|. +++.++..+ .++++|++|+|++|..+ ++..+ ...++
T Consensus 201 ~l~~~~~-----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~--~~~~~~~l~~~~ 272 (336)
T 2ast_B 201 NLSGYRK-----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDI--IPETLLELGEIP 272 (336)
T ss_dssp ECCSCGG-----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTC--CGGGGGGGGGCT
T ss_pred EeCCCcc-----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCC--CHHHHHHHhcCC
Confidence 9986632 24567777777789999999999999 888777655 47899999999999866 44422 25688
Q ss_pred CCccccC
Q 026286 157 NLKVLGP 163 (240)
Q Consensus 157 ~L~~L~~ 163 (240)
+|+.|..
T Consensus 273 ~L~~L~l 279 (336)
T 2ast_B 273 TLKTLQV 279 (336)
T ss_dssp TCCEEEC
T ss_pred CCCEEec
Confidence 8888877
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=1.4e-14 Score=134.42 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=110.2
Q ss_pred cchhcHHHHHhCCCCCcEEEeeC----------C-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 026286 10 CADVDLFPGSASAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~~----------~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~ 78 (240)
+++.++..++..|++|++|+|.+ | .+++.++..++..|++|+.|+++ |+.+++.++..+++.||+|+.
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcE
Confidence 45666666666777777777773 4 67777777777777777777773 456777777777777777777
Q ss_pred EEEe----eccCCCC------------------------CccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcC
Q 026286 79 LCRN----MHPLDTA------------------------DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC 130 (240)
Q Consensus 79 L~L~----~~~~~~~------------------------~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c 130 (240)
|+++ ++.+... ...+++.++..++..+++|++|+|++|.+++.++..++.+|
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence 7774 2222210 00257777888887899999999999999999999999999
Q ss_pred CcccEEeccCCCCCCCChHH---HHhcCCCCccccC
Q 026286 131 ALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP 163 (240)
Q Consensus 131 ~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~ 163 (240)
++|++|+|++|. + ++.. +...+++|+.|..
T Consensus 488 ~~L~~L~l~~n~-l--~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 488 PNLQKLEMRGCC-F--SERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp TTCCEEEEESCC-C--BHHHHHHHHHHCSSCCEEEE
T ss_pred cccCeeeccCCC-C--cHHHHHHHHHhcCccCeeEC
Confidence 999999999998 5 4432 3356888888876
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=7e-15 Score=136.43 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=98.6
Q ss_pred cchhcHHHHHhCCCCCcEEEee----CCCCCH----HHHHHHHhcCccCcEEEecCCC-CCCHHHHHHHHhcCCCCcEEE
Q 026286 10 CADVDLFPGSASAGSLQTLRLP----RSEMSD----SIVAQIAGRLSAVTFLDLSYCS-KIGAPALEAIGKHCKLLVVLC 80 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~----~~~itd----~~l~~l~~~~~~L~~L~Ls~c~-~it~~~l~~l~~~c~~L~~L~ 80 (240)
+++.++..++..+++|++|+|. .+.+++ .++..++..|++|+.|+|++|. .+++.++..+++.||+|+.|.
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 4555555555555555555554 224443 3555555556666666665443 356666666666677777777
Q ss_pred EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh-HHHHhcCCCCc
Q 026286 81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLK 159 (240)
Q Consensus 81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~-~~l~~~~~~L~ 159 (240)
++.| .+++.++..++..+++|++|+|++|.|++.++..++.++++|++|+|++|. ++..+ ..+...+|.++
T Consensus 470 L~~n-------~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 470 LGYV-------GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN 541 (592)
T ss_dssp ECSC-------CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred ccCC-------CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence 7655 357788888888999999999999999999999999999999999999999 53222 23445666655
Q ss_pred cc
Q 026286 160 VL 161 (240)
Q Consensus 160 ~L 161 (240)
+.
T Consensus 542 ~~ 543 (592)
T 3ogk_B 542 IE 543 (592)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.8e-15 Score=136.42 Aligned_cols=143 Identities=22% Similarity=0.231 Sum_probs=79.8
Q ss_pred cchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEec-----CCCCCC----HHHHHHHHhcCCCCcEEE
Q 026286 10 CADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLC 80 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls-----~c~~it----~~~l~~l~~~c~~L~~L~ 80 (240)
+++.++..++..|++|++|.+..+.+++.++..++..+|+|+.|+|+ +|+.++ +.++.++.+.|++|+.|.
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 34444444444444444444433344444444444444445555544 334444 344444444444444444
Q ss_pred EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH---HhcCCC
Q 026286 81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM---KGNFPN 157 (240)
Q Consensus 81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~ 157 (240)
++. .+++.++..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|.. ++..+ ...+++
T Consensus 439 L~~--------~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~---~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 439 LSG--------LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF---GDKALLANASKLET 507 (594)
T ss_dssp CCS--------SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC---CHHHHHHTGGGGGG
T ss_pred ecC--------cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC---cHHHHHHHHHhCCC
Confidence 421 3456666667666777888888777787777777777788888888887774 22222 244566
Q ss_pred CccccC
Q 026286 158 LKVLGP 163 (240)
Q Consensus 158 L~~L~~ 163 (240)
|+.|..
T Consensus 508 L~~L~l 513 (594)
T 2p1m_B 508 MRSLWM 513 (594)
T ss_dssp SSEEEE
T ss_pred CCEEee
Confidence 666655
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=7.9e-15 Score=136.00 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=123.9
Q ss_pred cccccchhcHHHHHhCCCCCcEEEee-----CC-CCC----HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCC
Q 026286 6 LDFLCADVDLFPGSASAGSLQTLRLP-----RS-EMS----DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 75 (240)
Q Consensus 6 ~~~~~tD~~L~~i~~~~~~L~~L~L~-----~~-~it----d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~ 75 (240)
....+++.++..++..+++|++|+|. +| .++ +.++..++..|++|+.|+|++ .+++.++..+++.+++
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~ 457 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK 457 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence 33457889999999899999999999 44 788 889999999999999999976 6999999999999999
Q ss_pred CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh-HHHHhc
Q 026286 76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGN 154 (240)
Q Consensus 76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~-~~l~~~ 154 (240)
|+.|.|+.|. +++.++..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|... ..+ ..+...
T Consensus 458 L~~L~L~~~~-------i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~ 529 (594)
T 2p1m_B 458 MEMLSVAFAG-------DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS-FGACKLLGQK 529 (594)
T ss_dssp CCEEEEESCC-------SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB-HHHHHHHHHH
T ss_pred ccEeeccCCC-------CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC-HHHHHHHHHh
Confidence 9999998773 4788888898899999999999999999999999989999999999999863 111 123466
Q ss_pred CCCCcc
Q 026286 155 FPNLKV 160 (240)
Q Consensus 155 ~~~L~~ 160 (240)
+|++++
T Consensus 530 lp~l~i 535 (594)
T 2p1m_B 530 MPKLNV 535 (594)
T ss_dssp CTTEEE
T ss_pred CCCCEE
Confidence 777764
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.55 E-value=6.7e-15 Score=117.34 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=68.1
Q ss_pred cCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc---CCCCCEEEeeCcc-cCHHHHH
Q 026286 49 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHV-ISTEIVL 124 (240)
Q Consensus 49 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~---~~~L~~L~L~~~~-it~~~l~ 124 (240)
+|+.|+|++|. ||+.++..+ ..|++|+.|.|+.+. .++|.++..|+.. +++|++|+|++|. ||+.|+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCH------YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCT------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCC------ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46666666654 666666665 356666666665442 2566666666642 4678888888886 8888888
Q ss_pred HHHhcCCcccEEeccCCCCCCCChH---HHHhcCCCCcc
Q 026286 125 KILSSCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKV 160 (240)
Q Consensus 125 ~l~~~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~ 160 (240)
.+. +||+|++|+|++|..++..+. .+++..|++++
T Consensus 134 ~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 134 ALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 775 688888888888888843332 33466777664
No 10
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.52 E-value=3.2e-14 Score=113.41 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=88.9
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhc---CCCCcEEEEeeccCCCCCccCChHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
..+|++|+|++|.|++.|+..+. .|++|+.|+|++|..||+.++..|++. |++|+.|+|+.|+ .+++.++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~------~ITD~Gl 132 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG------NVTDKGI 132 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT------TCCHHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC------cCCHHHH
Confidence 34799999999999999998884 899999999999999999999999873 6789999997653 4789999
Q ss_pred HHHHhcCCCCCEEEeeCcc-cCHHHH--HHHHhcCCcccE
Q 026286 99 NAIASTMPKLKRLEMAYHV-ISTEIV--LKILSSCALLEF 135 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~-it~~~l--~~l~~~c~~Le~ 135 (240)
.+++ .+++|++|+|++|. ||+.++ ..+.+.+|+++.
T Consensus 133 ~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 133 IALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9887 68999999999998 998764 455667888764
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.49 E-value=4.3e-13 Score=107.59 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=103.2
Q ss_pred hhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeec
Q 026286 12 DVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMH 84 (240)
Q Consensus 12 D~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~ 84 (240)
.+++..+...+++|++|+|++| .|++.|+..++.. +++|++|+|++| .+++.+..++++ ..++|+.|.|+.|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4466777778999999999999 9999998888754 689999999996 699988776655 4578999999877
Q ss_pred cCCCCCccCChHHHHHHHhcC---CCCCEEEe--eCcccCHHHHHHH---HhcCCcccEEeccCCCC
Q 026286 85 PLDTADKLSQDDEANAIASTM---PKLKRLEM--AYHVISTEIVLKI---LSSCALLEFLDLRGCWD 143 (240)
Q Consensus 85 ~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L--~~~~it~~~l~~l---~~~c~~Le~LdL~~C~~ 143 (240)
.+++.++.+++..+ ++|++|+| ++|.|++.++..+ ++.++.|++|+|++|..
T Consensus 104 -------~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 -------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp -------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred -------cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 45889988887665 78999999 8899999986655 45678999999998863
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=121.88 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=84.9
Q ss_pred ccccccccchhcHHHHHhC----CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh----cCC
Q 026286 3 LCLLDFLCADVDLFPGSAS----AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK----HCK 74 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~----~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~ 74 (240)
|+|.++.+++.....++.. +++|++|+|++|.|++.++..++..+++|+.|+|++| .+++.++..++. .++
T Consensus 77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~ 155 (372)
T 3un9_A 77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQC 155 (372)
T ss_dssp EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTC
T ss_pred EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCC
Confidence 5666677776666555443 3577777777777777777777777777777777775 577766665543 356
Q ss_pred CCcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHH---hcCCcccEEeccCCC
Q 026286 75 LLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCW 142 (240)
Q Consensus 75 ~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~---~~c~~Le~LdL~~C~ 142 (240)
+|+.|.|+.|. +++.++..++ ..+++|++|+|++|.|++.++..+. ..+++|+.|+|++|.
T Consensus 156 ~L~~L~Ls~n~-------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 156 QITTLRLSNNP-------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp CCCEEECCSSC-------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred ccceeeCCCCC-------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 77777776663 3444444443 3456677777777777666654443 345667777777664
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=9.5e-14 Score=123.23 Aligned_cols=134 Identities=16% Similarity=0.068 Sum_probs=112.9
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhc----CccCcEEEecCCCCCCHHHHHHHH---hcCC
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAIG---KHCK 74 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~----~~~L~~L~Ls~c~~it~~~l~~l~---~~c~ 74 (240)
.|+|.++.+++.++..++..+++|++|+|++|.|++.++..++.. +++|+.|+|++| .+++.++..++ ..++
T Consensus 105 ~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp EEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCS
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCC
Confidence 478889999999999999888999999999999999998888653 588999999997 68888777665 4678
Q ss_pred CCcEEEEeeccCCCCCccCChHHHHHHHh---cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCC
Q 026286 75 LLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWD 143 (240)
Q Consensus 75 ~L~~L~L~~~~~~~~~~~~~d~~~~~i~~---~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~ 143 (240)
+|+.|+|+.|. +++.++..++. .+++|++|+|++|.|++.++..++. .++.|++|+|++|..
T Consensus 184 ~L~~L~Ls~N~-------l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 184 SVTHLSLLHTG-------LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp SCCEEECTTSS-------CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CcCEEeCCCCC-------CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 99999998774 46777766653 4589999999999999988776654 679999999999973
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=3.3e-12 Score=114.84 Aligned_cols=133 Identities=16% Similarity=0.127 Sum_probs=90.5
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHH---HhcCccCcEEEecCCCCCCHHHHHHHHhcCC----
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAIGKHCK---- 74 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l---~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~---- 74 (240)
.|++....+++..+..+...+++|++|+|++|++++.++..+ ...+++|++|+|++| .+++.++..+.+.++
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCC
Confidence 366777778888888777788889999998888887654444 445788888888885 578877777777776
Q ss_pred CCcEEEEeeccCCCCCccCChHHHHH---HHhcCCCCCEEEeeCcccCHHHHHHHHhc----CCcccEEeccCCC
Q 026286 75 LLVVLCRNMHPLDTADKLSQDDEANA---IASTMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLDLRGCW 142 (240)
Q Consensus 75 ~L~~L~L~~~~~~~~~~~~~d~~~~~---i~~~~~~L~~L~L~~~~it~~~l~~l~~~----c~~Le~LdL~~C~ 142 (240)
+|++|.++.|.+ ++.++.. ....+++|++|+|++|.|++.++..+... .++|++|+|++|.
T Consensus 86 ~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 86 KIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 688888876644 3332222 22355667777777776666665554432 3356666666653
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=1.1e-11 Score=111.29 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhc----CCcccEEeccCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLDLRGCW 142 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~----c~~Le~LdL~~C~ 142 (240)
.+++|++|+|++|.|++.++..+... +++|++|+|++|.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 45666666666666666665555432 4566666666663
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1.1e-12 Score=100.80 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=98.2
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
...++|++|++++|.+++..+......+++|+.|++++| .++.- .....+++|+.|.++.|.+.. . ..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~-------~-~~ 81 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSG-------G-LE 81 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCS-------C-TH
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccc-------h-HH
Confidence 345789999999998874445555567999999999997 56653 333567999999998886532 1 23
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP 163 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~ 163 (240)
.+...+++|++|+|++|.|+.......+.++++|++|++++|........ .....+++|+.|..
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 34447999999999999998865555677899999999999976544431 23477899988865
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.21 E-value=7e-11 Score=94.57 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=93.9
Q ss_pred ccccccc-ccchhcHHHHHh---CCCCCcEEEeeCCCCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHhc--
Q 026286 2 ALCLLDF-LCADVDLFPGSA---SAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKH-- 72 (240)
Q Consensus 2 ~l~~~~~-~~tD~~L~~i~~---~~~~L~~L~L~~~~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~~-- 72 (240)
.|.|.++ .+++++...++. .+++|++|+|++|.|++.|...++.. .++|++|+|++| .|++.++.++++.
T Consensus 40 ~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQ 118 (185)
T ss_dssp EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGG
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHH
Confidence 3778888 899998888765 47899999999999999998777654 689999999996 6999998877654
Q ss_pred -CCCCcEEEE--eeccCCCCCccCChHHHHHHHhc---CCCCCEEEeeCcccCHHH
Q 026286 73 -CKLLVVLCR--NMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHVISTEI 122 (240)
Q Consensus 73 -c~~L~~L~L--~~~~~~~~~~~~~d~~~~~i~~~---~~~L~~L~L~~~~it~~~ 122 (240)
+++|+.|.| +.| .+++.++.+++.. .++|++|+|++|.|+..+
T Consensus 119 ~n~~L~~L~L~~~~N-------~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 119 SNTSLIELRIDNQSQ-------PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp GCSSCCEEECCCCSS-------CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred hCCCceEEEecCCCC-------CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 578999999 666 4578887777644 489999999999998876
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=3.8e-12 Score=97.69 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=94.7
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 81 (240)
.|.+.++.+++..+......+++|+.|+|++|.++.. .....+++|+.|+|++| .++.. +..+...+++|+.|.+
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEEC
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEEC
Confidence 3667777777555655556889999999999988764 33457899999999996 46653 4455566899999999
Q ss_pred eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH--HHHHhcCCcccEEeccC
Q 026286 82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG 140 (240)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l--~~l~~~c~~Le~LdL~~ 140 (240)
+.|.+ +.-........+++|++|++++|.++.... ...+..+|+|++|+++.
T Consensus 96 s~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 87754 332222334589999999999999876433 24667899999999863
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=3.7e-12 Score=99.68 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=98.0
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
...++|++|+|++|.+++..+......+++|+.|+|++|. ++.- .....+++|+.|.++.|.+... ..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------~~ 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG--------LD 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC--------CC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH--------HH
Confidence 3457899999999988744455555689999999999974 6643 3335679999999998865321 12
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccCC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPF 164 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~ 164 (240)
.+...+++|++|+|++|.|+.......+.++++|++|+|++|........ .....+++|+.|...
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 34446999999999999988743334456899999999999976644441 234678888888773
No 20
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=3.9e-11 Score=105.37 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCEEEeeCcccCHHHH---HHHHhcCC-cccEEeccCCC
Q 026286 107 KLKRLEMAYHVISTEIV---LKILSSCA-LLEFLDLRGCW 142 (240)
Q Consensus 107 ~L~~L~L~~~~it~~~l---~~l~~~c~-~Le~LdL~~C~ 142 (240)
+|++|+|++|.|+..+. ...+..++ +|++|+|++|.
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 55555555555433222 22223332 55555555554
No 21
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=5.4e-11 Score=104.43 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=103.6
Q ss_pred cccccccccchhcHHHHH---hCCC-CCcEEEeeCCCCCHHHHHHHHh---c-CccCcEEEecCCCCCCHHHHHHHH---
Q 026286 2 ALCLLDFLCADVDLFPGS---ASAG-SLQTLRLPRSEMSDSIVAQIAG---R-LSAVTFLDLSYCSKIGAPALEAIG--- 70 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~---~~~~-~L~~L~L~~~~itd~~l~~l~~---~-~~~L~~L~Ls~c~~it~~~l~~l~--- 70 (240)
.|+|.++.+++.....++ .+++ +|++|+|++|.|++.+...++. . +++|++|+|++| .++......++
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 104 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTL 104 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHH
Confidence 467888888888774333 3566 8999999999887655544443 3 389999999996 46654444333
Q ss_pred hcC-CCCcEEEEeeccCCCCCccCChHHHHHHH---hc-CCCCCEEEeeCcccCHHHHHHH---HhcCC-cccEEeccCC
Q 026286 71 KHC-KLLVVLCRNMHPLDTADKLSQDDEANAIA---ST-MPKLKRLEMAYHVISTEIVLKI---LSSCA-LLEFLDLRGC 141 (240)
Q Consensus 71 ~~c-~~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~-~~~L~~L~L~~~~it~~~l~~l---~~~c~-~Le~LdL~~C 141 (240)
+.+ ++|+.|.++.|.+ +..+...++ .. .++|++|+|++|.|++.++..+ +..++ +|++|+|++|
T Consensus 105 ~~~~~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDF-------SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HTSCTTCCEEECCSSCG-------GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HhCCCCccEEECcCCcC-------CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 334 7999999987754 233333333 23 4699999999999887555444 44555 9999999999
Q ss_pred CCCCCChHHHH---hcC-CCCccccCC
Q 026286 142 WDVKLDDKFMK---GNF-PNLKVLGPF 164 (240)
Q Consensus 142 ~~v~~~~~~l~---~~~-~~L~~L~~~ 164 (240)
.........+. ..+ ++|+.|...
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 75433333221 334 478877763
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=2.2e-12 Score=100.96 Aligned_cols=131 Identities=18% Similarity=0.077 Sum_probs=97.7
Q ss_pred cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286 2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81 (240)
Q Consensus 2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 81 (240)
.|.+.++.+++..+......+++|+.|+|++|.|+.. .....+++|+.|+|++| .++.. +..+...+++|+.|.+
T Consensus 28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEEC
T ss_pred EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEec
Confidence 3667777777656655556789999999999988763 33447899999999996 46653 4455566899999999
Q ss_pred eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH--HHHHhcCCcccEEeccCCCCC
Q 026286 82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l--~~l~~~c~~Le~LdL~~C~~v 144 (240)
+.|.+... ........+++|++|+|++|.++.... ...+..+|+|++|++++|...
T Consensus 103 s~N~l~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDI-------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSS-------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcc-------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 98865321 111223478999999999999775432 246778999999999999765
No 23
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.17 E-value=3.1e-10 Score=91.89 Aligned_cols=124 Identities=7% Similarity=0.078 Sum_probs=100.4
Q ss_pred chhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEee
Q 026286 11 ADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNM 83 (240)
Q Consensus 11 tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~ 83 (240)
-++.+..+..+-++|++|+|+++ .|.+.|+..+++. .+.|+.|+|++| .|++.+..+|+. .-+.|+.|.|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 35678888888899999999986 9999998888765 578999999996 699988776664 347899999987
Q ss_pred ccCCCCCccCChHHHHHHHhcC---CCCCEEEeeCc---ccCHHHHHHH---HhcCCcccEEeccCCC
Q 026286 84 HPLDTADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGCW 142 (240)
Q Consensus 84 ~~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~~~---~it~~~l~~l---~~~c~~Le~LdL~~C~ 142 (240)
| .+++.++.+|++.+ +.|++|+|+++ .|.+.+..++ ++.-+.|+.|+++.+.
T Consensus 108 N-------~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 108 N-------FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp S-------BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred C-------cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 7 46899999999887 67999999865 5788775544 5566899999997654
No 24
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.09 E-value=3.1e-10 Score=100.28 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=62.2
Q ss_pred cHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEeeccCCCCCc
Q 026286 14 DLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADK 91 (240)
Q Consensus 14 ~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~~~~~~~~~~ 91 (240)
.+..+...+|+|++|.|.+| .++ +..+ .+++|+.|+|..| .++..++..++. .+|+|+.|.|+.+.....+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred CHHHHHhcCCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 46566667788888888776 232 1111 3667777777664 466666666654 46777777764211000000
Q ss_pred cCChHHHHHHH--hcCCCCCEEEeeCcccCHHHHHHHHh--cCCcccEEeccCC
Q 026286 92 LSQDDEANAIA--STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGC 141 (240)
Q Consensus 92 ~~~d~~~~~i~--~~~~~L~~L~L~~~~it~~~l~~l~~--~c~~Le~LdL~~C 141 (240)
. .-..+..+. ..+|+|++|.|.+|.+++.+...++. .+|+|++|+|+.|
T Consensus 237 ~-~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 237 G-DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp S-CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred h-hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 0 000000011 13456666666666655555444443 3455666666544
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=4.2e-11 Score=96.30 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=76.1
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.|++ +.. ...+++|+.|++++| .++.- ..+ ..+++|+.|.++.|.+.. .....
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n~l~~-------~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGKDVTS-------DKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECTTCBG-------GGSCC
T ss_pred hcCCccEEeccCCCccC--hHH-HhcCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECCccCc-------ccChh
Confidence 35678888888887764 222 346788888888876 44432 223 346888888887665421 11111
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+ ..+++|++|+|++|.|+......+ .++++|++|+|++|..++.-. ....+++|+.|..
T Consensus 108 l-~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l 166 (197)
T 4ezg_A 108 L-SGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNI 166 (197)
T ss_dssp C-TTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEEC
T ss_pred h-cCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH--hhcCCCCCCEEEC
Confidence 2 256778888888777776444433 367778888887776442222 1255666776665
No 26
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.02 E-value=7.3e-11 Score=94.88 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=101.3
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.+..+++-. . ...+++|++|+|++|.++. +..+ ..+++|+.|+|++| .++...+..++ .+++|+.|.++
T Consensus 49 L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~--~~~l-~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls 120 (197)
T 4ezg_A 49 ITLANINVTDLT--G-IEYAHNIKDLTINNIHATN--YNPI-SGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDIS 120 (197)
T ss_dssp EEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSC--CGGG-TTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECC
T ss_pred EeccCCCccChH--H-HhcCCCCCEEEccCCCCCc--chhh-hcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEec
Confidence 455555555322 2 4478999999999997765 2333 47999999999996 57765555543 57999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccc
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L 161 (240)
.|.+ +......+. .+++|++|+|++|. +++-. .+.++++|+.|++++|...... ....+++|+.|
T Consensus 121 ~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L 186 (197)
T 4ezg_A 121 HSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQL 186 (197)
T ss_dssp SSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEE
T ss_pred CCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEE
Confidence 7754 343444454 89999999999998 77642 4668999999999999765333 23677888887
Q ss_pred cC
Q 026286 162 GP 163 (240)
Q Consensus 162 ~~ 163 (240)
..
T Consensus 187 ~l 188 (197)
T 4ezg_A 187 YA 188 (197)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.88 E-value=5.1e-09 Score=90.66 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.++... . ...+++|+.|++++| .++. +.. ...+++|+.|.++.|.+... .
T Consensus 219 ~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~l~~n~l~~~----------~ 281 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLS--P-LANLSQLTWLEIGTN-QISD--INA-VKDLTKLKMLNVGSNQISDI----------S 281 (347)
T ss_dssp GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC----------G
T ss_pred cCCcCCEEEccCCccCCCc--c-hhcCCCCCEEECCCC-ccCC--Chh-HhcCCCcCEEEccCCccCCC----------h
Confidence 4455555555555444311 1 234555555555554 2332 111 23445555555554433210 1
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
....+++|++|+|++|.++......+ .++++|++|+|++|....... ...+++|+.|..
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l 340 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADF 340 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESS
T ss_pred hhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC---hhhhhccceeeh
Confidence 12355666666666666655443333 356666666666665432222 245566665554
No 28
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.88 E-value=3e-10 Score=89.61 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=90.9
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|.|++|.++. +..+....++|+.|+|++| .++.- .. ...+++|+.|.++.|.+.... . .
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~----~----~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL--DG-FPLLRRLKTLLVNNNRICRIG----E----G 82 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CC-CCCCSSCCEEECCSSCCCEEC----S----C
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc--cc-cccCCCCCEEECCCCcccccC----c----c
Confidence 47899999999998874 4445545569999999996 56642 22 345789999999888653211 1 1
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~ 163 (240)
+...+++|++|+|++|.|+.-.....+.++++|+.|++++|........ .+...+++|+.|..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 2247899999999999986533222456889999999999876544443 13467888888876
No 29
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.88 E-value=1.4e-08 Score=82.07 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcC---CCCcEEEEeeccCCCCCccCChHHHHHHHhcC---CCCCE
Q 026286 37 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKR 110 (240)
Q Consensus 37 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~---~~L~~ 110 (240)
+..+..+....+.|+.|+|+++..|++.++.+|++.+ +.|+.|.|+.| .+++.++.+|+..+ +.|++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-------~igd~ga~alA~aL~~N~tL~~ 102 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSPSLRV 102 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCSSCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-------CCChHHHHHHHHHHhcCCccCe
Confidence 4668888888999999999986589999887776643 57999999877 45889999988665 88999
Q ss_pred EEeeCcccCHHHHHHHHhcC---CcccEEeccCCCCCCCChHH---H---HhcCCCCccccC
Q 026286 111 LEMAYHVISTEIVLKILSSC---ALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGP 163 (240)
Q Consensus 111 L~L~~~~it~~~l~~l~~~c---~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~ 163 (240)
|+|++|.|++.|+.++++.+ +.|+.|+|++|.+-...+.. + .+.-+.|+.|..
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 99999999999999987765 56999999976541113321 2 245567777765
No 30
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=5.4e-09 Score=92.31 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=90.7
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHh-cCccCcEEEecCCCC--CCH---HHHHHH--HhcCCCCcEEEEeeccCCCCCccC
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGA---PALEAI--GKHCKLLVVLCRNMHPLDTADKLS 93 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~-~~~~L~~L~Ls~c~~--it~---~~l~~l--~~~c~~L~~L~L~~~~~~~~~~~~ 93 (240)
.++|++|.|..|.++..++..++. .+|+|+.|+|+.+.. ..+ ..+..+ +..+|+|+.|+|..+. +
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-------i 264 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-------E 264 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-------T
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-------C
Confidence 789999999999999999988875 699999999964211 111 122222 1358999999997653 4
Q ss_pred ChHHHHHHHh--cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCCCCCChHH
Q 026286 94 QDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKF 150 (240)
Q Consensus 94 ~d~~~~~i~~--~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~v~~~~~~ 150 (240)
++.++.+++. .+|+|++|+|++|.|++.++.++.. .+++|+.|+|++|. + ++..
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i--~d~~ 323 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-L--SDEM 323 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-C--CHHH
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-C--CHHH
Confidence 5666666764 5799999999999999999888764 47999999999885 5 5543
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.86 E-value=7.8e-11 Score=102.32 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=36.3
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 85 (240)
++++|++|+|++|.++ .+......+++|+.|+|++| .++ . +..-...+++|+.|.++.|.
T Consensus 102 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~l~-~-lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLR-A-LPASIASLNRLRELSIRACP 161 (328)
T ss_dssp GGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-CCC-C-CCGGGGGCTTCCEEEEEEET
T ss_pred hCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-ccc-c-CcHHHhcCcCCCEEECCCCC
Confidence 4677788888777666 23333346777777777775 354 1 22223456777777776543
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.85 E-value=3.6e-09 Score=90.88 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=6.8
Q ss_pred CCCCcEEEeeCCCCC
Q 026286 22 AGSLQTLRLPRSEMS 36 (240)
Q Consensus 22 ~~~L~~L~L~~~~it 36 (240)
+++|+.|+|++|.++
T Consensus 62 l~~L~~L~L~~n~i~ 76 (308)
T 1h6u_A 62 LNNLIGLELKDNQIT 76 (308)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cCCCCEEEccCCcCC
Confidence 444444444444433
No 33
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.85 E-value=6.9e-11 Score=95.10 Aligned_cols=129 Identities=19% Similarity=0.156 Sum_probs=90.7
Q ss_pred HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
...+++|+.|+|++|.++. +. ....+++|+.|+|++| .++. +..+...+++|+.|.++.|.+. . +
T Consensus 44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~-------~--l 108 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIA-------S--L 108 (198)
T ss_dssp HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECC-------C--H
T ss_pred HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCC-------c--C
Confidence 3468899999999987665 33 3347899999999986 4552 3333445688999999888652 2 1
Q ss_pred HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC------h---HHHHhcCCCCccccC
Q 026286 99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KFMKGNFPNLKVLGP 163 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~------~---~~l~~~~~~L~~L~~ 163 (240)
..+. .+++|++|+|++|.|+.......+..+++|++|++++|...... . ..+...+++|+.|..
T Consensus 109 ~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 109 SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred Cccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 2333 77999999999999887554445668999999999998653110 0 012367888888763
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.84 E-value=6.9e-10 Score=95.36 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=33.5
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHH-HhcCccCcEEEecCCCCCCHH--HHHHHHh-cCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQI-AGRLSAVTFLDLSYCSKIGAP--ALEAIGK-HCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l-~~~~~~L~~L~Ls~c~~it~~--~l~~l~~-~c~~L~~L~L~~~~~ 86 (240)
.+++|++|+|++|.++......+ ...+++|+.|+|++| .++.. .+..+.. .+++|+.|.++.|.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence 45677777777766553222222 145667777777764 34432 1222211 126666666665544
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.83 E-value=2.6e-10 Score=99.00 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=63.1
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHH--------hcCCCCcEEEEeeccCCCCCcc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG--------KHCKLLVVLCRNMHPLDTADKL 92 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~--------~~c~~L~~L~L~~~~~~~~~~~ 92 (240)
.+++|++|+|++|.++ .+......+++|+.|+|++|..++. ....++ ..+++|+.|.++.|.+..
T Consensus 125 ~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---- 197 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---- 197 (328)
T ss_dssp GGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCCC----
T ss_pred ccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcCc----
Confidence 4566666666666555 2232334566666666666543221 111111 135666666666554421
Q ss_pred CChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 93 SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 93 ~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+.. . ...+++|++|+|++|.++. +...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 198 lp~----~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L 260 (328)
T 4fcg_A 198 LPA----S-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLIL 260 (328)
T ss_dssp CCG----G-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEEC
T ss_pred chH----h-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEEC
Confidence 110 1 2256666666666666552 22224456666666666665553222111 34455555544
No 36
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.81 E-value=7.7e-10 Score=94.92 Aligned_cols=131 Identities=14% Similarity=-0.010 Sum_probs=73.0
Q ss_pred ccccccccchhcHHHHHh--CCCCCcEEEeeCCCCCHHHHHHHH-hcCccCcEEEecCCCCCCHHH----HHHHHhcCCC
Q 026286 3 LCLLDFLCADVDLFPGSA--SAGSLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAPA----LEAIGKHCKL 75 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~--~~~~L~~L~L~~~~itd~~l~~l~-~~~~~L~~L~Ls~c~~it~~~----l~~l~~~c~~ 75 (240)
|.+.++.+++..+..+.+ ..++|++|+|++|.++......++ ..+++|+.|+|++| .++... ...+. .+++
T Consensus 69 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~-~~~~ 146 (310)
T 4glp_A 69 LTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW-LKPG 146 (310)
T ss_dssp EEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT-BCSC
T ss_pred EEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh-hccC
Confidence 455666777777665543 246799999988877653333332 46888888998886 455421 12233 6788
Q ss_pred CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH-HHHH--HHhcCCcccEEeccCCCC
Q 026286 76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE-IVLK--ILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~-~l~~--l~~~c~~Le~LdL~~C~~ 143 (240)
|+.|.++.|.+..... .....+++|++|+|++|+++.. ++.. ...++++|++|+|++|..
T Consensus 147 L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSC--------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp CCEEEEECCSSCCCCT--------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred CCEEEeeCCCcchhhH--------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 8888887776532110 0011445555555555554332 1111 113445555555555543
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.81 E-value=3.5e-09 Score=91.67 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=89.3
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++...- ...+++|++|+|++|.++. +.. ...+++|+.|++++| .++.- . ....+++|+.|.++
T Consensus 226 L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 226 LKIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INA-VKDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLN 295 (347)
T ss_dssp EECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECC
T ss_pred EEccCCccCCCcc---hhcCCCCCEEECCCCccCC--Chh-HhcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECc
Confidence 5566666665433 4578999999999998876 222 457999999999997 46642 2 24578999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
.|.+ +......+. .+++|++|+|++|.++.... +..+++|+.|++++|..
T Consensus 296 ~n~l-------~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 296 NNQL-------GNEDMEVIG-GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCC-------CGGGHHHHH-TCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred CCcC-------CCcChhHhh-ccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence 7754 334444444 79999999999999876432 66899999999999864
No 38
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.4e-09 Score=93.24 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=86.3
Q ss_pred ccccccccchhcHHHHH-hCCCCCcEEEeeCCCCCHHH----HHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCc
Q 026286 3 LCLLDFLCADVDLFPGS-ASAGSLQTLRLPRSEMSDSI----VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 77 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~-~~~~~L~~L~L~~~~itd~~----l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~ 77 (240)
|.+.++.++...-..++ ..+++|++|+|++|.++... ...+. .+++|+.|+|++| .++...... ...+++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~ 172 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFSCEQ-VRAFPALT 172 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCCTTS-CCCCTTCC
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCC-CcchhhHHH-hccCCCCC
Confidence 34445544443333332 46778888888888776421 12222 6788888888885 354322122 23568888
Q ss_pred EEEEeeccCCCCCccCChHHHHH---HHhcCCCCCEEEeeCcccC--HHHHHHHHhcCCcccEEeccCCCCCCCChHHHH
Q 026286 78 VLCRNMHPLDTADKLSQDDEANA---IASTMPKLKRLEMAYHVIS--TEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 152 (240)
Q Consensus 78 ~L~L~~~~~~~~~~~~~d~~~~~---i~~~~~~L~~L~L~~~~it--~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~ 152 (240)
.|.++.|.+ ....... ....+++|++|+|++|.|+ ......++.++++|++|+|++|.........+
T Consensus 173 ~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~- 244 (310)
T 4glp_A 173 SLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA- 244 (310)
T ss_dssp EEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-
T ss_pred EEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-
Confidence 888876643 1111111 1136788888888888876 33333455677888888888877553311111
Q ss_pred hcC---CCCccccC
Q 026286 153 GNF---PNLKVLGP 163 (240)
Q Consensus 153 ~~~---~~L~~L~~ 163 (240)
..+ ++|+.|..
T Consensus 245 ~~~~~~~~L~~L~L 258 (310)
T 4glp_A 245 PRCMWSSALNSLNL 258 (310)
T ss_dssp SSCCCCTTCCCEEC
T ss_pred HhccCcCcCCEEEC
Confidence 222 56666665
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.78 E-value=4.6e-09 Score=89.58 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=28.1
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 85 (240)
.+++|++|+|++|.++.- .. ...+++|+.|+|++| .++. +.. ...+++|+.|.++.|.
T Consensus 66 ~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDEN-KVKD--LSS-LKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-CCCC--GGG-GTTCTTCCEEECTTSC
T ss_pred cCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCC-cCCC--Chh-hccCCCCCEEECCCCc
Confidence 456666666666655431 11 235555666666554 2332 112 2334555555554443
No 40
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.78 E-value=1.9e-10 Score=95.80 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.|+... ......+++|+.|+|++| .++.-. ......+++|+.|.|+.|.+..... .
T Consensus 57 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--------~ 125 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQLKSLPS--------G 125 (251)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred CcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCcCCCcCh--------h
Confidence 4555666666665544311 111234556666666654 343211 1122345666666665554421110 0
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+...+++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l 186 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITL 186 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred HhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEe
Confidence 11246677777777776653111 123456777777777765443333222 34555665554
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=9.3e-09 Score=87.64 Aligned_cols=135 Identities=23% Similarity=0.224 Sum_probs=89.6
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.+++.. . ...+++|+.|+|++|.++. +.. ...+++|+.|+|++| .++. +..+ ..+++|+.|.++
T Consensus 73 L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~ 142 (291)
T 1h6t_A 73 LFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLG 142 (291)
T ss_dssp EECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECC
T ss_pred EEccCCccCCCc--c-cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEcc
Confidence 455555555432 2 4478888999998887765 333 347888999999886 4554 2233 457888998888
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
.|.+... .....+++|++|+|++|.|+.... +.++++|+.|+|++|....... ...+++|+.|.
T Consensus 143 ~n~l~~~----------~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~ 206 (291)
T 1h6t_A 143 NNKITDI----------TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLE 206 (291)
T ss_dssp SSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEE
T ss_pred CCcCCcc----------hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh---hccCCCCCEEE
Confidence 7755321 123378889999999888775332 5678889999998886543321 25567777776
Q ss_pred C
Q 026286 163 P 163 (240)
Q Consensus 163 ~ 163 (240)
.
T Consensus 207 l 207 (291)
T 1h6t_A 207 L 207 (291)
T ss_dssp E
T ss_pred C
Confidence 5
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.77 E-value=4.4e-10 Score=96.61 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=93.5
Q ss_pred ccccccccchhcHHHH-HhCCCCCcEEEeeCCCCCHH--HHHHHHhc-CccCcEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 026286 3 LCLLDFLCADVDLFPG-SASAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i-~~~~~~L~~L~L~~~~itd~--~l~~l~~~-~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~ 78 (240)
|.+.++.++...-..+ ...+++|++|+|++|.++.. .+..+... +++|++|+|++| .++......+ ..+++|+.
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~ 177 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV-RVFPALST 177 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-CCCSSCCE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-ccCCCCCE
Confidence 4555555554333222 25788999999999977653 22232211 389999999986 4554322233 35789999
Q ss_pred EEEeeccCCCCCccCChH-HHH-HH-HhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCCCCChHHHHh
Q 026286 79 LCRNMHPLDTADKLSQDD-EAN-AI-ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG 153 (240)
Q Consensus 79 L~L~~~~~~~~~~~~~d~-~~~-~i-~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~ 153 (240)
|.++.|.+ ... ... .+ ...+++|++|+|++|.|+. .....+..++++|++|+|++|............
T Consensus 178 L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 178 LDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp EECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred EECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 99987743 111 111 22 1577899999999999873 333455667899999999988755322111113
Q ss_pred cCCCCccccCC
Q 026286 154 NFPNLKVLGPF 164 (240)
Q Consensus 154 ~~~~L~~L~~~ 164 (240)
..++|+.|...
T Consensus 251 ~l~~L~~L~Ls 261 (312)
T 1wwl_A 251 WPSQLNSLNLS 261 (312)
T ss_dssp CCTTCCEEECT
T ss_pred hcCCCCEEECC
Confidence 34667776653
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.76 E-value=1.4e-09 Score=99.37 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=32.8
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|++|+|++|.++......+ ..+++|+.|+|++| .++. ..+......+++|+.|.++.|.+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred hCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcC
Confidence 55666666666665554222222 35666666666664 3443 12222234456666666655543
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.76 E-value=4.2e-10 Score=94.85 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=34.5
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|+.|+|++|.++. +.. ...+++|++|+|++| .++.-. ......+++|+.|.++.|.+
T Consensus 61 ~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGN-QLQSLP-NGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp GCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCcEEECCCCCCCC--chh-hcCCCCCCEEECCCC-ccCccC-hhHhcCCcCCCEEECCCCcC
Confidence 56777777777776654 222 235677777777765 344211 11223456677777765544
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.76 E-value=1.6e-10 Score=97.77 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=16.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
.+++|++|+|++|.++...... ...+++|+.|+|++|
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDN 90 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSC
T ss_pred cCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCC
Confidence 3455555555555444311111 123455555555554
No 46
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=9.3e-10 Score=86.76 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=89.5
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++. +..+....++|+.|+|++|.|+. +. ....+++|+.|+|++| .++.- ...+...+++|+.|.++
T Consensus 24 L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~--~~-~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 24 LDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILT 96 (176)
T ss_dssp EECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECC
T ss_pred EEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc--cc-ccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECC
Confidence 4566666663 24455556699999999998876 32 3347899999999996 56642 12233568999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+... . .+.. ...+++|++|+|++|.++... ...++..+|+|+.|++++|...
T Consensus 97 ~N~i~~~----~--~~~~-l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVEL----G--DLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCG----G--GGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcc----h--hhHh-hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8865321 1 1112 237899999999999976421 2235678999999999987654
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.73 E-value=4.9e-10 Score=94.77 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=29.8
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|.++.... ..+.++++|+.|+|++|.........+ ..+++|+.|..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l 232 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRL 232 (285)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEEC
T ss_pred CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHc-ccCcccCEEec
Confidence 45566666666665543221 122355666666666665443333222 45566666555
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.71 E-value=8.8e-09 Score=96.76 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=30.8
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|.|+.... +..+++|+.|+|++|....+. . ...+++|+.|..
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~--~-l~~l~~L~~L~L 204 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLEL 204 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEC
T ss_pred ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh--H-HccCCCCCEEEc
Confidence 56677777777776554222 456677777777776543221 1 244566666654
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.71 E-value=3.8e-10 Score=101.21 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=84.9
Q ss_pred cchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCC
Q 026286 10 CADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA 89 (240)
Q Consensus 10 ~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~ 89 (240)
|+...+..+-.-.++|++|+|++|.|+..... ....+++|++|+|++|. ++..........+++|++|.++.|.+...
T Consensus 17 c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 17 CINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred cCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCcc
Confidence 44444444444446788888888877652222 23468888888888863 33211112234568888888876654211
Q ss_pred CccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHH-HHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 90 DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 90 ~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~-~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
....+ ..+++|++|+|++|.++...+. ..+.++++|++|+|++|.........+...+++|+.|..
T Consensus 95 -------~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 95 -------ETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp -------CTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred -------Chhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 01111 2567888888888887654333 224567788888888776554333222356677777665
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=1.4e-08 Score=87.16 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=39.0
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.+++..- ...+++|+.|+|++|.++. +.. ...+++|+.|+|++| .++. +.. ...+++|+.|.++
T Consensus 68 L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 68 LELKDNQITDLAP---LKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTST-QITD--VTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp EECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECC
T ss_pred EEccCCcCCCChh---HccCCCCCEEEccCCcCCC--chh-hcCCCCCCEEECCCC-CCCC--chh-hcCCCCCCEEECC
Confidence 4455555544322 3456677777777776554 222 235666667766665 3443 112 2345666666665
Q ss_pred eccC
Q 026286 83 MHPL 86 (240)
Q Consensus 83 ~~~~ 86 (240)
.|.+
T Consensus 138 ~n~l 141 (308)
T 1h6u_A 138 LNQI 141 (308)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 5543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.70 E-value=6.4e-09 Score=90.57 Aligned_cols=62 Identities=26% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 84 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 84 (240)
.+++|++|+|++|.++.-. ......+++|++|+|++| .++.-........+++|+.|.++.|
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCC
Confidence 4566666666666554311 122235666666666654 2331000011233455555555443
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.69 E-value=4.8e-10 Score=94.36 Aligned_cols=62 Identities=18% Similarity=0.062 Sum_probs=26.0
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 85 (240)
.+++|++|+|++|.|+.- ...+...+++|++|+|++| .++.-. ......+++|+.|.++.|.
T Consensus 59 ~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN-KLQALP-IGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSSCCEEECCSSC
T ss_pred CCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC-cCCcCC-HhHcccccCCCEEECCCCc
Confidence 345555555555544320 0111224555555555553 233211 1112334555555554443
No 53
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.69 E-value=1.3e-09 Score=91.88 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=61.7
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.++.-. ......+++|+.|+|++| .++.- .......+++|+.|.++.|.+..... .
T Consensus 83 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~--------~ 151 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK--------G 151 (272)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred CCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCCccCccCH--------H
Confidence 4566666666666554211 111234566666666664 34321 11112345666666665554321110 0
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+...+++|++|+|++|+|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l 212 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWL 212 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred HhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEc
Confidence 1124566666666666655211 1223456666666666665443222211 34455555544
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=6.3e-09 Score=87.50 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=32.9
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|+|+... .+..+++|+.|+|++|..... .. ...+++|+.|..
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l 179 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDL 179 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEE
T ss_pred CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeC
Confidence 6677777777777766532 345677777777777765433 11 244555665544
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.68 E-value=6.8e-10 Score=93.44 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=27.9
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.+++|++|+|++|.++...+...+.++++|++|+|++|...
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 56778888888777665333344556778888888777654
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.68 E-value=1e-10 Score=99.83 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=51.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.++..........+++|+.|++++| .++.... .....+++|+.|.++.|.+.. .....
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-------~~~~~ 169 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQE-------NFLPD 169 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECST-TTTTTCTTCCEEECTTCEEGG-------GEECS
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccch-hhcccCcCCCEEECCCCcccc-------ccchh
Confidence 46667777776665443211112335666666666664 2332111 112344666666665443211 00000
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
....+++|++|+|++|.|+.... ..+.++++|+.|+|++|...
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCS
T ss_pred HHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccC
Confidence 11234555555555555443211 11234555555555555433
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.68 E-value=1.9e-08 Score=94.53 Aligned_cols=136 Identities=19% Similarity=0.144 Sum_probs=95.9
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++.- ..+ ..+++|+.|+|++|.|+.. .. ...+++|+.|+|++| .++. +..+ ..+++|+.|.|+
T Consensus 48 L~l~~n~i~~l--~~l-~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls 117 (605)
T 1m9s_A 48 IIANNSDIKSV--QGI-QYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDEN-KIKD--LSSL-KDLKKLKSLSLE 117 (605)
T ss_dssp CBCTTCCCCCC--TTG-GGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSS-CCCC--CTTS-TTCTTCCEEECT
T ss_pred EECcCCCCCCC--hHH-ccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCC-CCCC--Chhh-ccCCCCCEEEec
Confidence 44555554432 233 4689999999999987652 22 458999999999997 4554 2233 457999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
.|.+... .. ...+++|+.|+|++|.|+.. ..+..+++|+.|+|++|....... ...+++|+.|.
T Consensus 118 ~N~l~~l---------~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 181 (605)
T 1m9s_A 118 HNGISDI---------NG-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY 181 (605)
T ss_dssp TSCCCCC---------GG-GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred CCCCCCC---------cc-ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEE
Confidence 7765321 11 33789999999999998763 446689999999999997653333 36678888776
Q ss_pred CC
Q 026286 163 PF 164 (240)
Q Consensus 163 ~~ 164 (240)
..
T Consensus 182 Ls 183 (605)
T 1m9s_A 182 LS 183 (605)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.67 E-value=7.2e-10 Score=89.49 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|+.|+|++|.++.-. ......+++|++|+|++| .++.- .......+++|+.|.++.|.+..... .+
T Consensus 27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPN--------GV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------TT
T ss_pred CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccCH--------hH
Confidence 457888888888766311 222346788888888875 45521 12223456788888887665532110 11
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
...+++|++|+|++|.|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l 155 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHh-ccCCCccEEEe
Confidence 236678888888888766311 1223467788888888775443333222 44566666655
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.66 E-value=7e-10 Score=93.32 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
..+++|++|+|++|.++.-.. .....+++|+.|+|++| .++.-.. .....+++|+.|.++.|.+.....
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-------- 150 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYNELQSLPK-------- 150 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred cCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCCcCCccCH--------
Confidence 468899999999997764221 23347899999999986 4554222 223567999999998876542211
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 164 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 164 (240)
.....+++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|...
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~ 213 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQ 213 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred hHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEec
Confidence 112367999999999998764222 224578999999999986554443322 456777777663
No 60
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.65 E-value=1.3e-09 Score=89.69 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=90.3
Q ss_pred cchhcHHHHHh-CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286 10 CADVDLFPGSA-SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT 88 (240)
Q Consensus 10 ~tD~~L~~i~~-~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~ 88 (240)
|+...+..+-. -.++|+.|+|++|.|+... ......+++|+.|+|++| .++.- .......+++|+.|.|+.|.+..
T Consensus 26 c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp CTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcCccCCCCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCCcCCc
Confidence 44444443332 2468999999999776521 222346899999999986 45431 11223567899999998876542
Q ss_pred CCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 89 ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
... .+...+++|++|+|++|.|+ .+..-+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 103 l~~--------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l 166 (229)
T 3e6j_A 103 LPS--------AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAF-DRLSSLTHAYL 166 (229)
T ss_dssp CCT--------TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred cCh--------hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHH-hCCCCCCEEEe
Confidence 211 11236789999999999987 333334688999999999886554443222 45667776655
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.62 E-value=1.1e-09 Score=99.20 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=15.0
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY 57 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~ 57 (240)
.+++|++|+|++|.|+...... ...+++|+.|+|++
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRS 89 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCC
Confidence 3445555555554443311111 12344555555544
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.62 E-value=2.1e-09 Score=103.27 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHH--HHhcCCCCcEEEEeec
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHCKLLVVLCRNMH 84 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~--l~~~c~~L~~L~L~~~ 84 (240)
++++|++|+|++|.++......+..++++|++|+|++| .++...... +...+++|+.|.++.|
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCC
Confidence 56666666666664432211122234666666666664 344322222 1344556666665544
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.61 E-value=2.2e-09 Score=86.58 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=86.1
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.+..++...- .....+++|++|+|++|.++.- .......+++|++|+|++| .++.- .......+++|+.|.++
T Consensus 33 L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 33 LDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALN 108 (208)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred EEcCCCccCcCCh-hhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcC
Confidence 4455555553222 2234789999999999987731 1223347899999999996 46532 12223567999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+..... .....+++|++|+|++|.|+... ...+..+++|++|+|++|...
T Consensus 109 ~N~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPD--------GVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCH--------hHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence 876542111 11236899999999999977421 233557899999999998654
No 64
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.61 E-value=1.5e-08 Score=81.23 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=85.2
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.+..++.-. .+ ..+++|+.|+|++|.|+. +..+...+++|+.|+|++| .++. +..+ ..+++|+.|.++
T Consensus 53 L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~l~ 123 (198)
T 1ds9_A 53 LALSTNNIEKIS--SL-SGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGI-EKLVNLRVLYMS 123 (198)
T ss_dssp EECSEEEESCCC--CH-HHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHH-HHHHHSSEEEES
T ss_pred EECCCCCCcccc--cc-ccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCcc-ccCCCCCEEECC
Confidence 455555555532 33 367899999999997763 4455556899999999997 5664 3344 346899999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH---------HHHHHHhcCCcccEEec
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLDL 138 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~---------~l~~l~~~c~~Le~LdL 138 (240)
.|.+ +.-........+++|++|++++|.++.. ....++..+|+|+.|+-
T Consensus 124 ~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 124 NNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp EEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 8854 3323223344899999999999997654 22345678999999983
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.60 E-value=6.4e-08 Score=88.71 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=42.9
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHH--HhcCccCcEEEecCCCCCCHHH-HHHHHhcCCCCcEEEEeeccC
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYCSKIGAPA-LEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l--~~~~~~L~~L~Ls~c~~it~~~-l~~l~~~c~~L~~L~L~~~~~ 86 (240)
..+++|+.|+|++|.++....... ...+++|+.|+|++| .++.-. .......+++|+.|.++.|.+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCC
Confidence 467888888888888877544332 245788888888886 454322 123345677888888876654
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.60 E-value=1.2e-09 Score=93.13 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|+.|+|++|.|+.- ... ..+++|+.|+|++| .++. +......+++|+.|.++.|.+
T Consensus 53 ~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKL--QVD-GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp TCTTCCEEECTTSCCCEE--ECC-SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCccCcc--cCC-CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCcC
Confidence 345555555555544431 111 24555555555553 2331 111223445555555555443
No 67
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.59 E-value=1.7e-09 Score=96.98 Aligned_cols=133 Identities=17% Similarity=0.045 Sum_probs=85.3
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|+|.+..++...-..+ .++++|++|+|++|.++..........+++|++|+|++| .++......+ ..+++|+.|.++
T Consensus 35 L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~ 111 (455)
T 3v47_A 35 VDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLEVLTLT 111 (455)
T ss_dssp EECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCCEEECT
T ss_pred EEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc-cCcccCCEEeCC
Confidence 5566666654333333 368899999999987642211223346889999999986 4554322333 456889999997
Q ss_pred eccCCCCCccCChHHHHH-HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286 83 MHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 145 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~-i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~ 145 (240)
.|.+ +...... ....+++|++|+|++|.++......++.++++|++|+|++|....
T Consensus 112 ~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 112 QCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CCCC-------CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 6644 2211111 133678899999999887754333446678899999998886543
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.59 E-value=4.5e-08 Score=88.45 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=30.5
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|++++|.++.. .-+.++++|+.|++++|....... ...+++|+.|..
T Consensus 329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 382 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 382 (466)
T ss_dssp GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEEC
T ss_pred cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEec
Confidence 566666666666665542 123456677777776665432222 355666666655
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.58 E-value=1.7e-08 Score=84.87 Aligned_cols=120 Identities=21% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|+.|+|++|.|+. +.. ...+++|+.|+|++| .++.-. . ...+++|+.|.++.|.+.... .
T Consensus 39 ~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~---------~ 102 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS--LAG-MQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKNLN---------G 102 (263)
T ss_dssp HHTTCSEEECTTSCCCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSCCT---------T
T ss_pred hcCcCcEEECcCCCccc--chH-HhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCCcC---------c
Confidence 57899999999998875 333 347999999999996 566432 2 457899999999988663321 1
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 164 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 164 (240)
+. . ++|++|+|++|.|+.- . -+.++++|+.|+|++|...... . ...+++|+.|...
T Consensus 103 ~~-~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 103 IP-S-ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLH 158 (263)
T ss_dssp CC-C-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCBCG--G-GGGCTTCCEEECT
T ss_pred cc-c-CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCCCh--H-HccCCCCCEEECC
Confidence 11 2 8999999999998763 2 3568999999999998765332 2 3567888888764
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.58 E-value=4.3e-09 Score=90.58 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
+++|++|+|++|.++...-. ....+++|+.|+|++| .++......+...+++|+.|.++.|.+..... .
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---------Q 187 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---------C
T ss_pred cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccccc---------c
Confidence 45666666666665542111 1224667777777764 45543334444456677777776554421100 0
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..+++|++|+|++|.|+.- ..-+..+++|+.|+|++|...
T Consensus 188 -~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 188 -VVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp -CCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCC
T ss_pred -cccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCCccc
Confidence 0255666666666665421 111334566666666665433
No 71
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=4.7e-09 Score=85.92 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=82.4
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
++|+.|+|++|.|+.-.. .....+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+..... .+.
T Consensus 32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~--------~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNKITELPK--------SLF 100 (220)
T ss_dssp TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSCCCCCCT--------TTT
T ss_pred cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCcCCccCH--------hHc
Confidence 478999999987764211 12346788999999986 4654222233 456889999998776642211 112
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
..+++|++|+|++|.|+.... ..+.++++|++|+|++|...+.....+ ..+++|+.|..
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 159 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHL 159 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred cCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEe
Confidence 367889999999888764322 234467889999998887664444332 44566666655
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.57 E-value=2.3e-09 Score=96.98 Aligned_cols=129 Identities=22% Similarity=0.034 Sum_probs=78.8
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.|.+..++...-..+ ..+++|+.|+|++|.++.-. ......+++|+.|+|++| .++...... ...+++|+.|.++
T Consensus 61 L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~ 136 (477)
T 2id5_A 61 LELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVG 136 (477)
T ss_dssp EECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEEC
T ss_pred EECCCCccCEeChhhh-hCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCC-ccccCChhH-ccccccCCEEECC
Confidence 4455554444322222 36889999999999776421 112346899999999986 455422222 3567899999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+..... .++ ..+++|++|+|++|.++.... ..+.++++|+.|+|++|...
T Consensus 137 ~n~l~~~~~-------~~~-~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 137 DNDLVYISH-------RAF-SGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTCCEECT-------TSS-TTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCC
T ss_pred CCccceeCh-------hhc-cCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCc
Confidence 775532110 011 256788888888887654222 23446777777777776544
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.56 E-value=7.5e-09 Score=85.13 Aligned_cols=128 Identities=17% Similarity=0.069 Sum_probs=87.6
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.|.+..++...-.. ...+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++.- .......+++|+.|.|+
T Consensus 45 L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 45 LYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMC 120 (229)
T ss_dssp EECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred EEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEecc
Confidence 455555555432222 346889999999999875411 123357899999999996 56632 12233567999999999
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+.... . .+ ..+++|++|+|++|.|+.-.. ..+..+++|+.|+|+++...
T Consensus 121 ~N~l~~lp----~----~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 121 CNKLTELP----R----GI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCSCC----T----TG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CCcccccC----c----cc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 88764221 1 12 488999999999999874221 34567899999999998754
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.55 E-value=1.4e-09 Score=88.98 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=80.6
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
..+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++. ....+...+++|+.|.|+.|.+..... .
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~-------~ 122 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGN-KITE-LPKSLFEGLFSLQLLLLNANKINCLRV-------D 122 (220)
T ss_dssp TTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-------T
T ss_pred hCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCC-cCCc-cCHhHccCCCCCCEEECCCCCCCEeCH-------H
Confidence 36789999999999887522 222347899999999996 4663 122334567999999998886643211 1
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
. ...+++|++|+|++|.|+.... ..+..+++|+.|+|+++.-.
T Consensus 123 ~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 123 A-FQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp T-TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred H-cCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence 1 2368999999999999775322 23457899999999998754
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=8.3e-08 Score=86.73 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=34.0
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
..+++|++|+|++|.++.... +..+++|+.|++++|..... .. ...+++|+.|..
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l 360 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SS-LANLTNINWLSA 360 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred cCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hh-hccCCCCCEEeC
Confidence 366777777777777664322 45677788888877754422 11 245666666655
No 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=7.3e-09 Score=96.58 Aligned_cols=124 Identities=21% Similarity=0.335 Sum_probs=89.0
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
.+|+.|+|++|.|+. +.. ...+++|+.|+|++| .++ .+......+++|+.|.|+.|.+.. + ..+
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~----l-----p~l- 504 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALEN----V-----DGV- 504 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCC----C-----GGG-
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCC----C-----ccc-
Confidence 369999999998775 444 457899999999996 566 232233467999999998886632 1 122
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh--HHHHhcCCCCcccc
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 162 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~~L~ 162 (240)
..+++|++|+|++|.|+.......+.++++|+.|+|++|....... ..+...+|+|+.|.
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3789999999999998764313445689999999999987654322 23456788888874
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.54 E-value=1.2e-09 Score=101.13 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=77.1
Q ss_pred ccchhcHHHHHhCCC-CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286 9 LCADVDLFPGSASAG-SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD 87 (240)
Q Consensus 9 ~~tD~~L~~i~~~~~-~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~ 87 (240)
.|+...|..|=...| ++++|+|++|.|+.-. ......+++|++|+|++| .|+.-...+ ...+++|++|.|+.|.+.
T Consensus 37 ~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcCccCCCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCcCC
Confidence 455555555544443 7888888888776411 112246788888888886 455311112 245678888888766543
Q ss_pred CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
... . .....+++|++|+|++|.|+.-. ...+.++++|++|+|++|.............+++|+.|..
T Consensus 114 ~l~----~----~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 114 SLA----L----GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp EEC----G----GGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCC----H----HHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 211 0 11135667777777777655311 0113456677777777665432221111234455555544
No 78
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.54 E-value=3.4e-09 Score=95.22 Aligned_cols=37 Identities=22% Similarity=0.065 Sum_probs=18.9
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
.+++|++|+|++|.|+.-. ......+++|+.|+|++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp TCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSC
T ss_pred CCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCC
Confidence 4566666666666554211 111224555666666553
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.54 E-value=1.9e-09 Score=88.23 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=74.7
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
+.++.|+|++|.|+.-....+...+++|+.|+|++| .++.-...+ ...+++|+.|.|+.|.+.... . ...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~----~----~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA-FEGASGVNEILLTSNRLENVQ----H----KMF 101 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCC----G----GGG
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHH-hCCCCCCCEEECCCCccCccC----H----hHh
Confidence 467788888887654211222346788888888875 455321112 235678888888776553211 1 112
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
..+++|++|+|++|.|+.... ..+.++++|++|+|++|...+.....+ ..+++|+.|..
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 160 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNL 160 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred cCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEe
Confidence 367788888888887664211 223467778888888776554333222 34566666654
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.54 E-value=2.1e-08 Score=91.54 Aligned_cols=145 Identities=19% Similarity=0.189 Sum_probs=89.8
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 81 (240)
|.+.++.++......+ ..+++|+.|+|++|.++. ..+......+++|+.|+|++| .++..........+++|+.|.+
T Consensus 329 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp EECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEEC
T ss_pred EEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEEC
Confidence 4555555555333333 367888888888888775 234444557888888888886 4554222222345688888888
Q ss_pred eeccCCCCCccCChHHHHHHHhcC-CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcc
Q 026286 82 NMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKV 160 (240)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~i~~~~-~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~ 160 (240)
+.|.+. .. +...+ ++|++|+|++|+|+ .+..-+.++++|++|+|++|......... ...+++|+.
T Consensus 407 s~N~l~-------~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~ 472 (520)
T 2z7x_B 407 SSNILT-------DT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQK 472 (520)
T ss_dssp CSSCCC-------GG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred cCCCCC-------cc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHH-hccCCcccE
Confidence 777542 11 11123 68888888888877 34433447888888888888655444331 245566666
Q ss_pred ccC
Q 026286 161 LGP 163 (240)
Q Consensus 161 L~~ 163 (240)
|..
T Consensus 473 L~l 475 (520)
T 2z7x_B 473 IWL 475 (520)
T ss_dssp EEC
T ss_pred EEC
Confidence 655
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.54 E-value=5e-09 Score=94.45 Aligned_cols=58 Identities=19% Similarity=0.061 Sum_probs=25.8
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|.|+.... ..+.++++|+.|+|++|.........+ ..+++|+.|..
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 297 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDLF-TPLRYLVELHL 297 (452)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTSS-TTCTTCCEEEC
T ss_pred CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHHh-ccccCCCEEEc
Confidence 34455555555554432111 112345666666666654332222211 34455555544
No 82
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.52 E-value=1.6e-08 Score=97.24 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=82.5
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHH--HHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQ--IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~--l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~ 80 (240)
|+|..+..+...-..+..++++|++|+|++|.++...... +...+++|++|++++|. ++... .+ ..+++|+.|.
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~ 206 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLD 206 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEE
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEE
Confidence 3444444443333333357889999999999887533322 24578999999999864 44311 11 5678999999
Q ss_pred EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
++.|.+...- . . ...+++|++|+|++|.++.... ..+.++++|++|+|++|...
T Consensus 207 Ls~n~l~~~~---~-----~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 207 VSSNNFSTGI---P-----F-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp CCSSCCCSCC---C-----B-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCE
T ss_pred CcCCcCCCCC---c-----c-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCccc
Confidence 9877653211 0 1 2367888888888888775433 33457888888888887644
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.52 E-value=1.3e-09 Score=89.22 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=81.2
Q ss_pred HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
...+++|+.|+|++|.|+.-.- .....+++|+.|+|++| .++.-.. .....+++|+.|.|+.|.+.....
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~------- 122 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNRITCVGN------- 122 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCT-------
T ss_pred hccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCcCCeECH-------
Confidence 3478999999999998875221 12347899999999996 4654222 223567999999998887643211
Q ss_pred HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..+ ..+++|++|+|++|.|+... ...+..+++|+.|+|+++...
T Consensus 123 ~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 123 DSF-IGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSS-TTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred hHc-CCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence 111 26899999999999977532 233457899999999998754
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.52 E-value=9.3e-09 Score=93.96 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
+++|+.|+|++|.++......+ ..+++|+.|+|++| .++......+...+++|+.|.|+.|.+..... .
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---------~ 187 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---------Q 187 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---------C
T ss_pred cCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc---------c
Confidence 4566666666666654211112 34667777777764 45554444454456677777776554421100 0
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..+++|++|+|++|.|+. +..-+..+++|+.|+|++|...
T Consensus 188 -~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 188 -VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp -CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred -ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCc
Confidence 034555666666555543 1111334555555555555433
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.52 E-value=2.9e-09 Score=88.57 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=86.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.|.+..++...-. ....+++|+.|+|++|.++... ......+++|+.|+|++| .++.- .......+++|+.|.|+
T Consensus 64 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 64 LNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGN-QLKSL-PSGVFDRLTKLKELRLN 139 (251)
T ss_dssp EECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCccCHh-HhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCC-cCCCc-ChhHhccCCcccEEECc
Confidence 34444444432222 2246889999999999887421 223357899999999996 56632 12223567999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+..... .....+++|++|+|++|.|+... ...+.++++|+.|+|++|...
T Consensus 140 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 140 TNQLQSIPA--------GAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCccCH--------HHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCcee
Confidence 886642211 11236899999999999977422 123457899999999998765
No 86
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.51 E-value=9.6e-10 Score=102.21 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=30.4
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCC-CCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP-NLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~-~L~~L~~ 163 (240)
.+++|++|+|++|+++... ...+.++++|+.|+|++|...+.... + ..++ +|+.|..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p~~-~-~~l~~~L~~l~l 552 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGI-L-QHFPKSLAFFNL 552 (606)
T ss_dssp TCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEESC-G-GGSCTTCCEEEC
T ss_pred ccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccCHh-H-hhhcccCcEEEc
Confidence 5566777777777655421 12234566677777777654432222 2 3333 3665554
No 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.51 E-value=1.3e-09 Score=101.23 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=18.5
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
.+++|++|+|++|.++.... .....+++|+.|++++|
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN 335 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred ccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence 45566666666665543211 11224555555555554
No 88
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.49 E-value=1.4e-09 Score=92.83 Aligned_cols=131 Identities=21% Similarity=0.197 Sum_probs=70.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.++. +......+++|+.|++++| .++..........+++|+.|.++.|.+.... ..
T Consensus 76 ~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~ 144 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NG 144 (306)
T ss_dssp SCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECS--------TT
T ss_pred cccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccc--------hh
Confidence 46777777777776542 1111235677777777775 3332211112345677777777655432110 01
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
....+++|++|+|++|.++...+...+..+++|++|+|++|.........+ ..+++|+.|..
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L 206 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNM 206 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEC
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEEC
Confidence 122567777777777776543333444567777777777775442222222 34455555544
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.49 E-value=4e-09 Score=98.05 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=29.3
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 85 (240)
.+++|++|+|++|.++..........+++|+.|++++| .++......+ ..+++|+.|.++.|.
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLF-DGLPALQHLNLQGNH 460 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTT-TTCTTCCEEECTTCB
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHH-hCCCCCCEEECCCCC
Confidence 45566666666665433222222234556666666654 2332211111 234555555555443
No 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.48 E-value=8.1e-09 Score=95.51 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=38.7
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccC
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
..+++|++|+|++|.++......+ ..+++|+.|+|++| .++. ..+......+++|+.|.++.|.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred cCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 356777777777777665322222 35777777777775 4553 12222234567777777766654
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.48 E-value=3.2e-09 Score=92.53 Aligned_cols=81 Identities=20% Similarity=0.085 Sum_probs=53.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.+..++...-..+ ..+++|++|+|++|.++..... ....+++|++|+|++| .++.-. ......+++|+.|.++
T Consensus 57 L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 57 LDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLL 132 (353)
T ss_dssp EECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECT
T ss_pred EECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECC
Confidence 5555555554332223 3689999999999988752212 2347899999999986 466422 2323567999999998
Q ss_pred eccCC
Q 026286 83 MHPLD 87 (240)
Q Consensus 83 ~~~~~ 87 (240)
.|.+.
T Consensus 133 ~n~l~ 137 (353)
T 2z80_A 133 GNPYK 137 (353)
T ss_dssp TCCCS
T ss_pred CCCCc
Confidence 77653
No 92
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.47 E-value=9.3e-09 Score=94.55 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=24.0
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.+++|++|+|++|.++...+...+.++++|++|++++|...
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 56667777777766553222233445667777777666543
No 93
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.46 E-value=2.6e-08 Score=93.83 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=56.2
Q ss_pred hcCccCcEEEecCCCCCCHH-----------------HHHHHH-hcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCC
Q 026286 45 GRLSAVTFLDLSYCSKIGAP-----------------ALEAIG-KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP 106 (240)
Q Consensus 45 ~~~~~L~~L~Ls~c~~it~~-----------------~l~~l~-~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~ 106 (240)
.++++|++|+|++|. ++.. ....++ +.+++|+.|.++.|.+... +. ..+ ..++
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~---~p----~~l-~~l~ 273 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LP----TFL-KALP 273 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS---CC----TTT-TTCS
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc---Ch----HHH-hcCC
Confidence 356777777777753 5552 112221 2567777777766543210 00 011 2566
Q ss_pred CCCEEEeeCcc-cCHHHHHHHHh------cCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 107 KLKRLEMAYHV-ISTEIVLKILS------SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 107 ~L~~L~L~~~~-it~~~l~~l~~------~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+|++|+|++|+ ++...+..-+. .+++|++|+|++|....+........+++|+.|..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeC
Confidence 77777777776 66522322222 23667777776665443333111244555555544
No 94
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.46 E-value=5e-09 Score=94.43 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=26.2
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 85 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 85 (240)
++++|+.|+|++|.|+.-.... ...+++|+.|+|++| .++.-. ......+++|+.|.|+.|.
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDN-WLTVIP-SGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCSBCC-TTTSSSCTTCCEEECCSCC
T ss_pred CCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCC-cCCccC-hhhhcccCCCCEEECCCCC
Confidence 4455555555555444311111 124555555555553 233211 1112234555555554443
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.45 E-value=1.4e-09 Score=93.63 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=17.4
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
.+++|++|+|++|.++... ......+++|++|+|++|
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GCTTCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECcCCeeCCcC-CHHHhCCCCCCEEeCCCC
Confidence 4555666666655544211 111224555555555553
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.45 E-value=5.3e-08 Score=83.83 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=26.4
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|.|+..... .+.++++|+.|+|++|........ ...+++|+.|..
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~~L~l 270 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYL 270 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSCCTT--TTTCSSCCEEEC
T ss_pred CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCccCChh--hccCCCcCEEEC
Confidence 445566666666554432111 123455666666666544322221 133445555444
No 97
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.44 E-value=2.4e-09 Score=90.10 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=95.9
Q ss_pred cccchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 8 FLCADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 8 ~~~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
+.|++..+..+-.. .++|++|+|++|.++.-....+ ..+++|+.|+|++| .++.-...++ ..+++|+.|.++.|.+
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCCcc
Confidence 34565555555443 3479999999998875332233 47899999999996 5664222223 4679999999987765
Q ss_pred CCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC-hHHHHhcCCCCccccCC
Q 026286 87 DTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD-DKFMKGNFPNLKVLGPF 164 (240)
Q Consensus 87 ~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~-~~~l~~~~~~L~~L~~~ 164 (240)
.... ... ...+++|++|++++|.++...... +.++++|++|+|++|...... ...+ ..+++|+.|...
T Consensus 89 ~~~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls 157 (276)
T 2z62_A 89 QSLA-------LGA-FSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS 157 (276)
T ss_dssp CEEC-------TTT-TTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECC
T ss_pred CccC-------hhh-hcCCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhh-ccCCCCCEEECC
Confidence 3211 111 237899999999999976422211 457899999999998765322 2222 566788877663
No 98
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.44 E-value=1.1e-08 Score=94.92 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=22.2
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
.+++|++|+|++|.++...+...+.++++|++|+|++|..
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 4566666666666654322333344566666666666543
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.43 E-value=1e-08 Score=96.64 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
++++|++|+|++|.++..... ....+++|+.|+|++| .++.-. ......+++|++|.++.|.+.... .. .
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~----~~---~ 116 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHN-ELSQLS-DKTFAFCTNLTELHLMSNSIQKIK----NN---P 116 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCC----SC---T
T ss_pred CCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCC-ccCccC-hhhhccCCCCCEEECCCCccCccC----hh---H
Confidence 456666666666655432111 2235666666666664 333211 111234566666666555432110 00 0
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH-hcCCCCccccC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK-GNFPNLKVLGP 163 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~-~~~~~L~~L~~ 163 (240)
+ ..+++|++|+|++|.++..... .+.++++|++|++++|.........+. ..+++|+.|..
T Consensus 117 ~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 117 F-VKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp T-TTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred c-cccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 1 2456666666666665432111 123566666666666654433333221 12345555544
No 100
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.42 E-value=6.6e-09 Score=93.31 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=33.3
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|+.|+|++|.|+.-.... ...+++|+.|+|++| .++.-. ......+++|+.|.|+.|.+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDN-RLTTIP-NGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSS-CCSSCC-TTTSCSCSSCCEEECCSCCC
T ss_pred CCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCC-cCCeeC-HhHhhccccCceeeCCCCcc
Confidence 5666777777666655322122 235667777777764 344211 11123456677777665543
No 101
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.42 E-value=6.4e-08 Score=85.26 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
++|+.|+|++|.+++. .....+++|+.|+|++| .++......+ ..+++|+.|.++.|.+..... ..
T Consensus 226 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---------~~ 291 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNRLVALNL---------YG 291 (390)
T ss_dssp SSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECCSSCCCEEEC---------SS
T ss_pred ccccEEECCCCCCccc---HHHcCCCCccEEECCCC-cCCCcChhHc-cccccCCEEECCCCcCcccCc---------cc
Confidence 4566666666655542 12345677777777775 3543222222 345677777776654422110 01
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
..+|+|++|+|++|+++. +..-+..+++|+.|+|++|...+.. ...+++|+.|..
T Consensus 292 ~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l 346 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL 346 (390)
T ss_dssp SCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEEC
T ss_pred CCCCCCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC----chhhccCCEEEc
Confidence 246777777777777652 2222335677777777776654332 244556666555
No 102
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.42 E-value=2.1e-08 Score=86.35 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=29.4
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
++|+.|+|++|.|+...... ...+++|++|+|++| .++.....++ ..+++|+.|.++.|.+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKNQL 112 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSSCC
T ss_pred CCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCCcC
Confidence 45666666666554321111 235566666666654 3432211122 2445666666655543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.41 E-value=8.4e-09 Score=90.46 Aligned_cols=116 Identities=23% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|+.|+|++|.|+.-.. .....+++|+.|+|++| +++.-. ......+++|+.|.|+.|.+.... ..+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~-------~~~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSN-HLHTLD-EFLFSDLQALEVLLLYNNHIVVVD-------RNA 131 (361)
T ss_dssp CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-------TTT
T ss_pred cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCC-cCCcCC-HHHhCCCcCCCEEECCCCcccEEC-------HHH
Confidence 45566666666665543111 11234566666666664 344211 111234566666666655442110 001
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHH--HhcCCcccEEeccCCCCCCCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCWDVKLD 147 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l--~~~c~~Le~LdL~~C~~v~~~ 147 (240)
...+++|++|+|++|.|+.-....+ +..+++|+.|+|++|....+.
T Consensus 132 -~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 132 -FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp -TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred -hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 1256777777777777654211111 134677777777776554433
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.41 E-value=2.3e-09 Score=104.09 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=36.2
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHh-cCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG-NFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~-~~~~L~~L~~ 163 (240)
.+++|++|+|++|.++.......+.++++|++|+|++|.........+.. ..++|+.|..
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 67888888888888765433334567888888888887654322222110 1156666654
No 105
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.41 E-value=5.5e-07 Score=82.47 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=75.6
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHH--HhcCCCCcEEEEeeccCCCCCccCChHH-
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI--GKHCKLLVVLCRNMHPLDTADKLSQDDE- 97 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l--~~~c~~L~~L~L~~~~~~~~~~~~~d~~- 97 (240)
..++|+.|+|++|.++. .-..+...+++|+.|+|++| .++....... ...+++|+.|.++.|.+. .-.
T Consensus 308 ~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~ 378 (549)
T 2z81_A 308 LLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-------SMQK 378 (549)
T ss_dssp HSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCC-------CHHH
T ss_pred hcccceEEEeccCcccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCccc-------cccc
Confidence 45678888888887653 11234457899999999986 5776554332 346789999999877542 211
Q ss_pred HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.......+++|++|+|++|+++ .+...+..+++|++|+|++|...
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC--CCCSCCCCCTTCCEEECTTSCCS
T ss_pred chhhhhcCCCCCEEECCCCCCc--cCChhhcccccccEEECCCCCcc
Confidence 1123457889999999999877 23333445678888888887643
No 106
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.40 E-value=1.6e-08 Score=86.13 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=68.2
Q ss_pred ccchhcHHHHHh-CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286 9 LCADVDLFPGSA-SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD 87 (240)
Q Consensus 9 ~~tD~~L~~i~~-~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~ 87 (240)
.|+...+..+-. -.++|+.|+|++|.|+...... ...+++|+.|+|++| .++.-. .. ..+++|+.|.++.|.+.
T Consensus 16 ~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 16 NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQ--VD-GTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp ECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTS-CCCEEE--CC-SCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCC-ccCccc--CC-CCCCcCCEEECCCCcCC
Confidence 344444444432 2468999999999886532222 347899999999996 466421 11 57899999999888664
Q ss_pred CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286 88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 142 (240)
Q Consensus 88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~ 142 (240)
.... ....+++|++|+|++|.|+... ...+.++++|++|+|++|.
T Consensus 91 ~l~~---------~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 91 SLPL---------LGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNE 135 (290)
T ss_dssp SCCC---------CTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSC
T ss_pred cCch---------hhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCC
Confidence 2111 1124455555555555544211 0112344455555555443
No 107
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.40 E-value=2.5e-09 Score=98.38 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=91.9
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++...-. ...+++|++|+|++|.++..........+++|+.|++++|. ++... ......+++|+.|.++
T Consensus 378 L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 378 LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMA 453 (570)
T ss_dssp EECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECT
T ss_pred EECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECc
Confidence 44455444432211 34688999999999866542222234578999999999874 44322 2223467899999997
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
.|.+.. .........+++|++|+|++|.++.... ..+.++++|++|+|++|.........+ ..+++|+.|.
T Consensus 454 ~n~l~~-------~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 524 (570)
T 2z63_A 454 GNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIW 524 (570)
T ss_dssp TCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEE
T ss_pred CCcCcc-------ccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEE
Confidence 665421 0011112367899999999998775322 234478899999999886553333222 5667777776
Q ss_pred CC
Q 026286 163 PF 164 (240)
Q Consensus 163 ~~ 164 (240)
..
T Consensus 525 l~ 526 (570)
T 2z63_A 525 LH 526 (570)
T ss_dssp CC
T ss_pred ec
Confidence 63
No 108
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.39 E-value=1.2e-08 Score=89.94 Aligned_cols=137 Identities=19% Similarity=0.086 Sum_probs=94.5
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.+++. . ....+++|++|+|++|.++...... ...+++|+.|+|++| .++. +......+|+|+.|.++
T Consensus 231 L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 231 LKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp EECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECC
T ss_pred EECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECC
Confidence 45555555553 2 3347899999999999887532223 347899999999996 4654 22223567999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
.|.+... . .. + ..+++|++|+|++|.|+... +..+++|+.|+|++|... ...+...+..++...
T Consensus 304 ~n~l~~~----~-~~---~-~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 304 HNHLLHV----E-RN---Q-PQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARPA 367 (390)
T ss_dssp SSCCCCC----G-GG---H-HHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTTT
T ss_pred CCcceec----C-cc---c-cccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCcc---chhHHHHHHHHHhhc
Confidence 8866421 1 11 2 26799999999999987643 567899999999998744 334445555555433
No 109
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.38 E-value=6.3e-09 Score=89.50 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=59.9
Q ss_pred CCCcEEEeeCCCCCH--HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 23 GSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 23 ~~L~~L~L~~~~itd--~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.++++|+|+++.++. . +......+++|++|+|++++.++......+ ..+++|+.|.++.|.+... +. ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~---~p----~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGA---IP----DF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEE---CC----GG
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCc---CC----HH
Confidence 467777777776653 2 222334677777777774334443322233 3467777777766654210 00 01
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
+ ..+++|++|+|++|.|+.. +...+.++++|++|+|++|..
T Consensus 121 ~-~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 121 L-SQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp G-GGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC
T ss_pred H-hCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc
Confidence 1 2566777777777665431 112234566677777766653
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.38 E-value=9.2e-09 Score=90.19 Aligned_cols=143 Identities=21% Similarity=0.146 Sum_probs=93.2
Q ss_pred cchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286 10 CADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT 88 (240)
Q Consensus 10 ~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~ 88 (240)
|+...|..|-.. .+.++.|+|++|.|+.-....+...+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+..
T Consensus 25 c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 25 CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCCE
T ss_pred eCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCcCCc
Confidence 444444444332 3469999999998875322222227899999999996 5664322223 467999999998886532
Q ss_pred CCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH--hcCCCCccccC
Q 026286 89 ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLGP 163 (240)
Q Consensus 89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~~ 163 (240)
... .....+++|++|+|++|.|+.... ..+.++++|+.|+|++|....+....+. ..+++|+.|..
T Consensus 103 ~~~--------~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 103 LDE--------FLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp ECT--------TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCH--------HHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 110 112378999999999999874321 2345789999999999987655554331 34677777655
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.38 E-value=8.1e-09 Score=95.65 Aligned_cols=115 Identities=23% Similarity=0.120 Sum_probs=82.6
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
.++++|++|+|++|.|+.-. ......+++|++|+|++| +++.-. ......+++|+.|.++.|.+..... .
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l~~----~--- 142 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVETNLASLEN----F--- 142 (635)
T ss_dssp TTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-GGGGTTCTTCCEEECTTSCCCCSTT----C---
T ss_pred hCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCC-cCCCCC-HHHhcCCCCCCEEECCCCcCCCCCh----h---
Confidence 47899999999999886411 122357899999999996 465421 1223568999999998776532211 0
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK 145 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~ 145 (240)
+ ...+++|++|+|++|.|+...+.....++++|++|+|++|....
T Consensus 143 ~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 143 P-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp C-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred h-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 1 13789999999999998754455556688999999999987543
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.37 E-value=3.5e-08 Score=92.00 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=85.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.|.+..++. +.. ...+++|+.|+|++|.|+ .+......+++|+.|+|++| .++. +.. ...+++|+.|.|+
T Consensus 446 L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls 516 (567)
T 1dce_A 446 LHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLC 516 (567)
T ss_dssp EECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECC
T ss_pred EEecCCCCCC--CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCCcEEECC
Confidence 5566666554 333 346889999999999887 34444558999999999996 5664 333 3568999999999
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH--HHHHHHhcCCcccEEec
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL 138 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~--~l~~l~~~c~~Le~LdL 138 (240)
.|.+..... ...+ ..+++|+.|+|++|.|+.. .+..+...+|+|+.|++
T Consensus 517 ~N~l~~~~~------p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAA------IQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSST------TGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCC------cHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 886632210 1122 3789999999999997653 34456667899999975
No 113
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.36 E-value=6.9e-08 Score=90.12 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=69.6
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
..+++|+.|+|++|.|+......+ ..+++|+.|+|++|. ++.-.. .....+++|+.|.|+.|.+.....
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~-------- 140 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSLPR-------- 140 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred ccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCCCH--------
Confidence 356777777777776654211122 357777777777753 443211 122456777777776665431110
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
.+...+++|++|+|++|.|+.... ..+.++++|++|+|++|...... ...+++|+.|.
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~ 198 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHAN 198 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEE
T ss_pred HHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhh
Confidence 112356777777777777653221 12346777777777777544222 13445555443
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.35 E-value=2.9e-08 Score=79.58 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=75.3
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|++|.|++|.|+. +......+++|+.|+|++| .++.-...+ ...+++|+.|.|+.|.+..... . +
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~----~---~- 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYNRLRCIPP----R---T- 97 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCCBCCT----T---T-
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCCccCEeCH----H---H-
Confidence 4589999999998763 3334457899999999986 465422122 2457899999998886643211 0 1
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
...+++|++|+|++|.|+.-. ...+..+++|+.|+|+++...
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 236789999999999977311 123456889999999887654
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.35 E-value=3.4e-08 Score=84.90 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=83.7
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.+..++...-..+ ..+++|+.|+|++|.++......+...+++|+.|+|++| .++.- ... ..+++|+.|.++
T Consensus 125 L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls 199 (317)
T 3o53_A 125 IYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLS 199 (317)
T ss_dssp EECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECC
T ss_pred EECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cccccCCEEECC
Confidence 3444544443221112 357889999999998876555556567899999999986 45542 111 137889999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+... ... ...+++|++|+|++|.|+. +...+..+++|+.|+|++|...
T Consensus 200 ~N~l~~l----~~~-----~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 200 SNKLAFM----GPE-----FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SSCCCEE----CGG-----GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred CCcCCcc----hhh-----hcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 7765321 111 2367889999999998773 3334567788999999888755
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.34 E-value=2.1e-07 Score=84.35 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=52.6
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 100 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~ 100 (240)
.+++|++|+|++|.++.- . ...+++|+.|++++| .++.- . ...+++|+.|.++.|.+... .
T Consensus 62 ~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N-~l~~~---~-~~~l~~L~~L~L~~N~l~~l----------~ 122 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSN-KLTNL---D-VTPLTKLTYLNCDTNKLTKL----------D 122 (457)
T ss_dssp GCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSS-CCSCC---C-CTTCTTCCEEECCSSCCSCC----------C
T ss_pred ccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCC-CCcee---e-cCCCCcCCEEECCCCcCCee----------c
Confidence 456666666666655441 1 235666666666664 34432 1 23456666666665543211 0
Q ss_pred HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
...+++|++|++++|.++... +.++++|+.|++++|..+
T Consensus 123 -~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp -CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCC
T ss_pred -CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcc
Confidence 125566666666666655421 335566666666655433
No 117
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=8.9e-08 Score=93.44 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=83.2
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHH------hcCCCCcEEEEeeccCCCCCccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIG------KHCKLLVVLCRNMHPLDTADKLS 93 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~------~~c~~L~~L~L~~~~~~~~~~~~ 93 (240)
++++|+.|+|++|.+.... ......+++|+.|+|++|..++. .....++ ..+|+|+.|.++.|.+.. +
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~----i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE----F 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB----C
T ss_pred cCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc----c
Confidence 6788999999998654422 23344788999999998644776 3333333 345689999998776531 1
Q ss_pred ChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCC-CccccC
Q 026286 94 QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGP 163 (240)
Q Consensus 94 ~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~-L~~L~~ 163 (240)
.. . .....+++|++|+|++|.|+ .+. .+.++++|+.|+|++|....+... + ..+++ |+.|..
T Consensus 564 p~--~-~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~-l-~~l~~~L~~L~L 626 (876)
T 4ecn_A 564 PA--S-ASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPED-F-CAFTDQVEGLGF 626 (876)
T ss_dssp CC--H-HHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTT-S-CEECTTCCEEEC
T ss_pred CC--h-hhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHH-H-hhccccCCEEEC
Confidence 11 0 12237788888888888877 343 455778888888888765533322 1 34455 666655
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.33 E-value=9.9e-09 Score=93.78 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=88.6
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++...-..+ ..+++|+.|+|++|.++......+...+++|+.|+|++|. ++.. ..+ ..+++|+.|.|+
T Consensus 125 L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~~-~~l~~L~~L~Ls 199 (487)
T 3oja_A 125 IYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLS 199 (487)
T ss_dssp EECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECC
T ss_pred EECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc--ccc-ccCCCCCEEECC
Confidence 4455555443221122 3578999999999998875555666678999999999974 6643 112 247999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.|.+.... . . ...+++|+.|+|++|.|+. +...+..+++|+.|+|++|...
T Consensus 200 ~N~l~~~~----~----~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 200 SNKLAFMG----P----E-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SSCCCEEC----G----G-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCC----H----h-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 88664211 1 1 2377999999999999874 4444567899999999998755
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.33 E-value=8.4e-09 Score=82.54 Aligned_cols=112 Identities=16% Similarity=0.093 Sum_probs=77.7
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|++|.|++|.|+.-....+...+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+..... ..
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--------~~ 97 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGENKIKEISN--------KM 97 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSCCCCEECS--------SS
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCCcCCccCH--------HH
Confidence 3489999999998765222223457999999999996 5664322233 457999999998886642211 01
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
...+++|++|+|++|.|+... ...+..+++|++|+|+++.-.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 126799999999999977522 223457899999999998754
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.33 E-value=2.4e-08 Score=78.46 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|++|.|++|.++.- .......+++|+.|+|++| .++.- .......+++|+.|.++.|.+..... ..
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPN--------GV 95 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------TT
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCH--------HH
Confidence 46899999999877631 1222346889999999986 46531 11223467899999998776542111 11
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
...+++|++|+|++|.|+.- ...++..+++|++|+|++|...
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred hhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCee
Confidence 23678999999999987731 1233457889999999988754
No 121
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.32 E-value=6.1e-09 Score=101.08 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=16.8
Q ss_pred cCCCCCEEEeeCcccCHHHHHH-HHhcCCcccEEeccCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~-l~~~c~~Le~LdL~~C~~ 143 (240)
.+++|++|+|++|.++...+.. .+.++++|++|+|++|..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 3445555555555443211111 123444555555555443
No 122
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.29 E-value=6.1e-08 Score=89.58 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=64.6
Q ss_pred CCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 21 SAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
.+++|+.|+|++|.++. ..+......+++|+.|+|++| .++..........+++|+.|.++.|.+. .
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------~---- 442 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-------G---- 442 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCC-------G----
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCC-------c----
Confidence 55666677776666653 112233345666777777664 3432111112234566666666655432 1
Q ss_pred HHHhcC-CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 100 AIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 100 ~i~~~~-~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+...+ ++|++|+|++|+|+ .+..-+.++++|++|+|++|...+..... ...+++|+.|..
T Consensus 443 ~~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~l 504 (562)
T 3a79_B 443 SVFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGV-FDRLTSLQYIWL 504 (562)
T ss_dssp GGGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTTS-TTTCTTCCCEEC
T ss_pred chhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHHH-HhcCCCCCEEEe
Confidence 011123 46777777777665 22222235667777777766554333321 134455555544
No 123
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.27 E-value=3.4e-08 Score=92.16 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 102 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~ 102 (240)
++|+.|+|++|.+++. .....+++|+.|+|++| .++......+ ..+++|+.|.|+.|.+..... ..
T Consensus 232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~---------~~ 297 (597)
T 3oja_B 232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNRLVALNL---------YG 297 (597)
T ss_dssp SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSCCCEEEC---------SS
T ss_pred CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCCCCCCCc---------cc
Confidence 4566666666655541 12234566666666654 3443222222 234556666655443321100 01
Q ss_pred hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
..+|+|++|+|++|.++. +...+..+++|+.|+|++|...
T Consensus 298 ~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCC
T ss_pred ccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCC
Confidence 134555555555555441 2211234455555555555433
No 124
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=1.5e-07 Score=91.83 Aligned_cols=126 Identities=14% Similarity=0.044 Sum_probs=79.9
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCC-CCHHHHHH-HH------hcCccCcEEEecCCCCCCHHHHHH--HHhc
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSE-MSDSIVAQ-IA------GRLSAVTFLDLSYCSKIGAPALEA--IGKH 72 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~-itd~~l~~-l~------~~~~~L~~L~Ls~c~~it~~~l~~--l~~~ 72 (240)
|.|.++..+...- ....++++|+.|+|++|. ++...+.. +. ..+|+|+.|+|++| .++ . +.. ....
T Consensus 496 L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~-ip~~~~l~~ 571 (876)
T 4ecn_A 496 VELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE-E-FPASASLQK 571 (876)
T ss_dssp EEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC-B-CCCHHHHTT
T ss_pred EECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC-c-cCChhhhhc
Confidence 3444444333222 223478899999999997 88722322 22 23459999999996 466 2 322 3356
Q ss_pred CCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCc-ccEEeccCCCCC
Q 026286 73 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCWDV 144 (240)
Q Consensus 73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~-Le~LdL~~C~~v 144 (240)
+++|+.|.|+.|.+.. +. . ...+++|++|+|++|.++ .+..-+.++++ |+.|+|++|...
T Consensus 572 L~~L~~L~Ls~N~l~~----lp-----~-~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVRH----LE-----A-FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CTTCCEEECTTSCCCB----CC-----C-CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCccc----ch-----h-hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC
Confidence 7899999998776531 11 1 136678888888888876 34333556677 888888877644
No 125
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.27 E-value=1.8e-08 Score=82.95 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=77.1
Q ss_pred CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee-ccCCCCCccCChHHHHHH
Q 026286 23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAI 101 (240)
Q Consensus 23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~~~~~~d~~~~~i 101 (240)
++|+.|+|++|+|+.-.-. ....+++|+.|+|++|..++.-... ....+++|+.|.++. |.+..... ..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~--------~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP--------DA 100 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT--------TS
T ss_pred CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH--------HH
Confidence 4789999999877642211 2346889999999986435432111 224678899999976 65532110 01
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCccc---EEeccCCCCCC-CChHHHHhcCCCCc-cccC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLE---FLDLRGCWDVK-LDDKFMKGNFPNLK-VLGP 163 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le---~LdL~~C~~v~-~~~~~l~~~~~~L~-~L~~ 163 (240)
...+++|++|+|++|.++. +.. +..+++|+ +|++++|..++ .....+ ..+++|+ .|..
T Consensus 101 f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l 163 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKL 163 (239)
T ss_dssp EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEEC
T ss_pred hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEc
Confidence 1257888888888888664 222 44677777 88888884442 222112 3455666 5554
No 126
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.26 E-value=2.3e-08 Score=94.27 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=8.3
Q ss_pred CCCCCcEEEeeCCCC
Q 026286 21 SAGSLQTLRLPRSEM 35 (240)
Q Consensus 21 ~~~~L~~L~L~~~~i 35 (240)
.+++|+.|+|++|.+
T Consensus 403 ~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEI 417 (680)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCCCEEeCCCCcC
Confidence 455555555555544
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.26 E-value=5.9e-07 Score=81.36 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=17.7
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
++++|++|+|++|.++. +. ...+++|+.|++++|
T Consensus 104 ~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp TCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTS
T ss_pred CCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCC
Confidence 45566666666665443 11 234555555555553
No 128
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.25 E-value=2e-08 Score=82.60 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=69.2
Q ss_pred hCCCCCcEEEeeCCC-CCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 20 ASAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~-itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
..+++|++|+|++|. ++.-.-. ....+++|+.|+|++|+.++.-.. .....+++|+.|.++.|.+... ..
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~l----p~--- 122 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKMF----PD--- 122 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCSC----CC---
T ss_pred cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCccc----cc---
Confidence 368899999999996 7642111 224689999999998556664221 2234678999999988765321 11
Q ss_pred HHHHhcCCCCC---EEEeeCc-ccCHHHHHHHHhcCCccc-EEeccCCCCC
Q 026286 99 NAIASTMPKLK---RLEMAYH-VISTEIVLKILSSCALLE-FLDLRGCWDV 144 (240)
Q Consensus 99 ~~i~~~~~~L~---~L~L~~~-~it~~~l~~l~~~c~~Le-~LdL~~C~~v 144 (240)
...+++|+ +|++++| .++.-.. ..+.++++|+ .|++++|...
T Consensus 123 ---~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 123 ---LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp ---CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred ---cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence 12455555 7777777 5543111 1133567777 7777766543
No 129
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.20 E-value=8.2e-08 Score=90.40 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=22.1
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C 141 (240)
.+++|++|+|++|.|+. +..-+.++++|+.|+|++|
T Consensus 511 ~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp TCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSC
T ss_pred cCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCC
Confidence 56677777777777664 3333445677777777543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.11 E-value=3.2e-07 Score=87.89 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=76.8
Q ss_pred HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
...+++|+.|+|++|.|+. +..-...+++|+.|+|++| .++ .....+ ..+++|+.|.|+.|.+... ..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~l----p~--- 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT-ELPAEI-KNLSNLRVLDLSHNRLTSL----PA--- 287 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS-CCCGGG-GGGTTCCEEECTTSCCSSC----CS---
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc-ccChhh-hCCCCCCEEeCcCCcCCcc----Ch---
Confidence 3467889999999997652 2222237899999999986 566 222233 5679999999988876421 11
Q ss_pred HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.+ ..+++|++|+|++|.|+ .+..-+.++++|++|+|++|...
T Consensus 288 -~~-~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 288 -EL-GSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp -SG-GGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCC
T ss_pred -hh-cCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccC
Confidence 12 36889999999999886 33333567899999999998755
No 131
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.06 E-value=5e-07 Score=77.82 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=62.8
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|+.|+|++|.|+.-... ....+++|++|+|++| .++.....++ ..+++|+.|.++.|.+......
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~--------- 120 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKNHLVEIPPN--------- 120 (332)
T ss_dssp CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSSCCCSCCSS---------
T ss_pred CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCCcCCccCcc---------
Confidence 35788888888877642111 2346788888888875 4554322233 4568888888877655321111
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
..++|++|++++|.|+... ...+.++++|++|++++|..
T Consensus 121 --~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 121 --LPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp --CCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCC
T ss_pred --ccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCcc
Confidence 1256777777777655311 12234567777777766654
No 132
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=3.8e-06 Score=70.94 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=39.7
Q ss_pred HhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC-CC-
Q 026286 70 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK-LD- 147 (240)
Q Consensus 70 ~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~-~~- 147 (240)
...+|+|+.|.|+.|.+... .++..+...+|+|+.|+|++|.|+...-..-++++ +|+.|+|++|.... ..
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred HhhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence 34456666666655543211 11112223556666666666665543111112222 56666666655331 00
Q ss_pred --h--HHHHhcCCCCccccC
Q 026286 148 --D--KFMKGNFPNLKVLGP 163 (240)
Q Consensus 148 --~--~~l~~~~~~L~~L~~ 163 (240)
. ..+...+|+|+.|..
T Consensus 239 ~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHHCTTCCEESS
T ss_pred chhHHHHHHHHCcccCeECC
Confidence 0 123456666666654
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.03 E-value=8.8e-08 Score=82.59 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=85.2
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|++|+|++|.++......+ ..+++|+.|+|++| .++......+ ..+++|+.|.++.|.+... .. .
T Consensus 192 ~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l----p~----~- 259 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNNKLSRV----PA----G- 259 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSSCCCBC----CT----T-
T ss_pred cCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCCcCeec----Ch----h-
Confidence 3689999999998765322223 36899999999996 4554222223 4679999999988866421 11 1
Q ss_pred HhcCCCCCEEEeeCcccCHHHHHHHHhc-----CCcccEEeccCCCCC--CCChHHHHhcCCCCccccC
Q 026286 102 ASTMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGCWDV--KLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~-----c~~Le~LdL~~C~~v--~~~~~~l~~~~~~L~~L~~ 163 (240)
...+++|++|+|++|.|+......+... .+.|+.|+++++... ......+ ..+++|+.+..
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-~~l~~L~~l~l 327 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQF 327 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-TTBCCSTTEEC
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc-cccchhhhhhc
Confidence 2378999999999999876544333221 467999999998754 1222222 44566665543
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.02 E-value=6.8e-08 Score=77.20 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=81.5
Q ss_pred CcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286 25 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 104 (240)
Q Consensus 25 L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~ 104 (240)
.+.|++++++++. +.. ...++|+.|+|++| .++.-....+...+++|+.|.|+.|.+.... ..+ ...
T Consensus 10 ~~~l~~s~~~l~~--ip~--~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~-~~~ 76 (192)
T 1w8a_A 10 GTTVDCTGRGLKE--IPR--DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-------PNA-FEG 76 (192)
T ss_dssp TTEEECTTSCCSS--CCS--CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-------TTT-TTT
T ss_pred CCEEEcCCCCcCc--Ccc--CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-------HhH-cCC
Confidence 3788888887643 111 12458999999996 5654222223456799999999888664221 011 237
Q ss_pred CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+++|++|+|++|+|+.... ..+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 77 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 133 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNL 133 (192)
T ss_dssp CTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEEC
T ss_pred cccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEe
Confidence 8999999999999875322 224478999999999987653333222 45667777765
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.02 E-value=2.3e-06 Score=80.56 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=41.6
Q ss_pred ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHH
Q 026286 48 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 127 (240)
Q Consensus 48 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~ 127 (240)
++|+.|+|++| .++. +...+++|+.|.++.|.+... . ..+++|++|+|++|.|+ .+...+
T Consensus 221 ~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~l----p--------~~~~~L~~L~Ls~N~L~--~lp~~l 280 (622)
T 3g06_A 221 SGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTSL----P--------MLPSGLLSLSVYRNQLT--RLPESL 280 (622)
T ss_dssp TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCC----C--------CCCTTCCEEECCSSCCC--SCCGGG
T ss_pred CCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCcC----C--------cccccCcEEeCCCCCCC--cCCHHH
Confidence 44555555553 2332 113445566666655543211 1 14567777777777766 233335
Q ss_pred hcCCcccEEeccCCCCC
Q 026286 128 SSCALLEFLDLRGCWDV 144 (240)
Q Consensus 128 ~~c~~Le~LdL~~C~~v 144 (240)
.++++|+.|+|++|...
T Consensus 281 ~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp GGSCTTCEEECCSCCCC
T ss_pred hhccccCEEEecCCCCC
Confidence 56777777777776644
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.02 E-value=3.8e-07 Score=71.45 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=82.7
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~ 103 (240)
+.+.+++.+++++. +. ....++|+.|++++| .++.- .......+++|+.|.++.|.+.... . ....
T Consensus 8 ~~~~l~~~~~~l~~--~p--~~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~----~----~~~~ 73 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS--VP--TGIPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLP----D----GVFD 73 (177)
T ss_dssp ETTEEECCSSCCSS--CC--TTCCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC----T----TTTT
T ss_pred CCCEEEecCCCCcc--CC--CCCCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeC----h----hHcc
Confidence 36788888887654 11 123579999999996 46532 1222356799999999888664211 1 1123
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.+++|++|+|++|.|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus 74 ~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l 131 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTNQLKSVPDGIF-DRLTSLQKIWL 131 (177)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred CCCccCEEECCCCCccccC-HHHhhCCcccCEEECcCCcceEeCHHHh-cCCcccCEEEe
Confidence 7899999999999987421 2234578999999999996654443222 45677777766
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.99 E-value=5.1e-06 Score=78.20 Aligned_cols=72 Identities=13% Similarity=0.013 Sum_probs=45.9
Q ss_pred CCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH
Q 026286 73 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 152 (240)
Q Consensus 73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~ 152 (240)
+++|+.|.++.|.+.. +...+++|++|+|++|.|+. +.. .+++|+.|+|++|....+... +
T Consensus 220 ~~~L~~L~Ls~N~L~~------------lp~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~-l- 280 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS------------LPVLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPES-L- 280 (622)
T ss_dssp CTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGG-G-
T ss_pred CCCCCEEEccCCccCc------------CCCCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHH-H-
Confidence 3566666666554321 11356888888888888763 221 568899999988865544432 2
Q ss_pred hcCCCCccccC
Q 026286 153 GNFPNLKVLGP 163 (240)
Q Consensus 153 ~~~~~L~~L~~ 163 (240)
..+++|+.|..
T Consensus 281 ~~l~~L~~L~L 291 (622)
T 3g06_A 281 IHLSSETTVNL 291 (622)
T ss_dssp GGSCTTCEEEC
T ss_pred hhccccCEEEe
Confidence 56777777766
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=6.7e-06 Score=69.46 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=59.1
Q ss_pred HHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCccc
Q 026286 40 VAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 118 (240)
Q Consensus 40 l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~i 118 (240)
+..+...+|+|+.|+|++| +++. ..+..+...+|+|+.|.|+.|.+... ..+..+. .+ +|++|.|.+|.+
T Consensus 162 l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l~~l~-~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE------RELDKIK-GL-KLEELWLDGNSL 232 (267)
T ss_dssp HHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGGGGGT-TS-CCSEEECTTSTT
T ss_pred HHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc------hhhhhcc-cC-CcceEEccCCcC
Confidence 3344456888999999886 4554 23444456778899999987765321 1111111 23 899999999997
Q ss_pred CH------HHHHHHHhcCCcccEEec
Q 026286 119 ST------EIVLKILSSCALLEFLDL 138 (240)
Q Consensus 119 t~------~~l~~l~~~c~~Le~LdL 138 (240)
+. .-...++..+|+|+.||=
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccccCcchhHHHHHHHHCcccCeECC
Confidence 64 334567778999999874
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.90 E-value=1.2e-06 Score=69.99 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=81.7
Q ss_pred cEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcC
Q 026286 26 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 105 (240)
Q Consensus 26 ~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~ 105 (240)
+.+++++++++. +.. .-.++|+.|+|++| .++. +......+++|+.|.|+.|.+..... .+ ...+
T Consensus 13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~-------~~-f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSN-------QS-FSNM 77 (193)
T ss_dssp TEEECTTSCCSS--CCS--CCCTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCT-------TT-TTTC
T ss_pred CEEEcCCCCCCc--CCC--CCCCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCH-------hH-ccCC
Confidence 578888876653 111 12468999999996 5662 22234567999999998886643211 11 2378
Q ss_pred CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286 106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 164 (240)
Q Consensus 106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 164 (240)
++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|...
T Consensus 78 ~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~ 134 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIG 134 (193)
T ss_dssp TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECC
T ss_pred CCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhh-hcCccccEEEeC
Confidence 999999999999775322 224578999999999988664444333 456777777653
No 140
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.90 E-value=2.7e-06 Score=79.34 Aligned_cols=33 Identities=9% Similarity=-0.184 Sum_probs=15.7
Q ss_pred CEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286 109 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 143 (240)
Q Consensus 109 ~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~ 143 (240)
+.|+|++|.|+. +..-+..+++|+.|+|++|..
T Consensus 210 ~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRENRITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred eEEecCCCccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 555555555442 222222355566666655543
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.89 E-value=2.3e-06 Score=79.78 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=74.6
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~ 103 (240)
+|+.|+|++|.|+. +.. .+++|+.|+|++| .++. +...+++|+.|.|+.|.+.... . +
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N~L~~lp----~-----l-- 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNN-QLTM-----LPELPTSLEVLSVRNNQLTFLP----E-----L-- 178 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCCC----C-----C--
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCCCCCCcc----h-----h--
Confidence 89999999987765 332 5889999999986 4653 2225789999999888664321 1 1
Q ss_pred cCCCCCEEEeeCcccCHHHHHH----HHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLK----ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~----l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
. ++|++|+|++|.|+. +.. +....+.|+.|+|++|....+..... .+++|+.|..
T Consensus 179 ~-~~L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L 237 (571)
T 3cvr_A 179 P-ESLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIIL 237 (571)
T ss_dssp C-TTCCEEECCSSCCSS--CCCCC--------CCEEEECCSSCCCCCCGGGG--GSCTTEEEEC
T ss_pred h-CCCCEEECcCCCCCc--hhhHHHhhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEe
Confidence 1 899999999999772 222 11222334999999987665554332 3677777765
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.81 E-value=1e-06 Score=84.41 Aligned_cols=102 Identities=16% Similarity=0.106 Sum_probs=70.8
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.|.+..++. +..-.-.+++|++|+|++|.|+ .+..-...+++|+.|+|++| .++ .....+ ..+++|+.|.|+
T Consensus 229 L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~-~~l~~L~~L~L~ 301 (727)
T 4b8c_D 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAEL-GSCFQLKYFYFF 301 (727)
T ss_dssp EECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSG-GGGTTCSEEECC
T ss_pred EECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhh-cCCCCCCEEECC
Confidence 5555555542 2111226899999999999887 34333468999999999996 466 222233 467999999998
Q ss_pred eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH
Q 026286 83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 120 (240)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~ 120 (240)
.|.+.. +... + ..+++|++|+|++|.|+.
T Consensus 302 ~N~l~~----lp~~----~-~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 302 DNMVTT----LPWE----F-GNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSCCCC----CCSS----T-TSCTTCCCEECTTSCCCS
T ss_pred CCCCCc----cChh----h-hcCCCccEEeCCCCccCC
Confidence 886632 1111 2 378999999999999874
No 143
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.68 E-value=2.2e-05 Score=70.86 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=13.4
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 58 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c 58 (240)
+|++|+|++|.++. +.. ...+++|++|++++|
T Consensus 132 ~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCC
Confidence 44444444444332 221 223444555555443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=6.5e-06 Score=70.86 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=42.9
Q ss_pred CCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCccc-EEecc
Q 026286 61 IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLR 139 (240)
Q Consensus 61 it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le-~LdL~ 139 (240)
+....+..+...|++|+.|.++.+.+...+. . + ...|++|+.|.|..| ++.-+- ....+|++|+ .|.+.
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~---a-F~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPD----F---T-FAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELP 282 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECT----T---T-TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecH----h---h-hhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEc
Confidence 3444555555567777777776554322111 0 1 125666666666655 222111 1123566666 66665
Q ss_pred CCCCCCCChHHHHhcCCCCcccc
Q 026286 140 GCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 140 ~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
. ........++ ..|++|+.+.
T Consensus 283 ~-~l~~I~~~aF-~~c~~L~~l~ 303 (329)
T 3sb4_A 283 A-SVTAIEFGAF-MGCDNLRYVL 303 (329)
T ss_dssp T-TCCEECTTTT-TTCTTEEEEE
T ss_pred c-cceEEchhhh-hCCccCCEEE
Confidence 4 1111122222 4555555554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.67 E-value=1.2e-06 Score=68.58 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=67.5
Q ss_pred CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286 24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103 (240)
Q Consensus 24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~ 103 (240)
+.+.|+++++.++. +.. .-.++|+.|+|++| .++.-.... ...+++|+.|.|+.|.+..... .+..
T Consensus 10 ~~~~l~~s~n~l~~--ip~--~~~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~--------~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKSLAS--VPT--GIPTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA--------GVFD 75 (170)
T ss_dssp ETTEEECTTSCCSS--CCS--CCCTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCCCCCCT--------TTTT
T ss_pred CCCEEEeCCCCcCc--cCc--cCCCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCCCcCccCh--------hhcc
Confidence 35778888886654 111 12478899999885 455421122 2456889999998776542211 1123
Q ss_pred cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
.+++|++|+|++|+|+.-. ...+.++++|++|+|+++...
T Consensus 76 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence 6788999999999876321 123457889999999887654
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.67 E-value=3.3e-06 Score=66.01 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|+.|+|++|.|+.-. ......+++|+.|+|++| +++.- ...+...+++|+.|.|+.|.+.... . ..
T Consensus 29 ~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~----~----~~ 97 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQLKSIP----R----GA 97 (170)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC----T----TT
T ss_pred CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCccCEeC----H----HH
Confidence 468999999999876521 223347899999999996 56632 1223356799999999988764321 1 11
Q ss_pred HhcCCCCCEEEeeCcccC
Q 026286 102 ASTMPKLKRLEMAYHVIS 119 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it 119 (240)
...+++|++|+|++|.++
T Consensus 98 ~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTCTTCCEEECCSSCBC
T ss_pred hcCCCCCCEEEeCCCCCC
Confidence 237899999999999975
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.59 E-value=5.1e-06 Score=65.27 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=67.8
Q ss_pred CcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286 25 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 104 (240)
Q Consensus 25 L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~ 104 (240)
-+.+++++++++. +.. .-.++|+.|+|++| .++.-. ......+++|+.|.|+.|.+.... . .+...
T Consensus 14 ~~~l~~~~n~l~~--iP~--~~~~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~----~----~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIRLAS--VPA--GIPTDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSNKLTAIP----T----GVFDK 79 (174)
T ss_dssp SSEEECCSSCCSS--CCS--CCCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC----T----TTTTT
T ss_pred CcEEEeCCCCCCc--cCC--CcCCCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCCCCCccC----h----hHhCC
Confidence 4678888876643 111 12478999999985 455321 222345788999999877654211 1 11236
Q ss_pred CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
+++|++|+|++|.|+.-. ...+.++++|++|+|+++...
T Consensus 80 l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCBC
T ss_pred cchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCcc
Confidence 789999999999877311 123557889999999988754
No 148
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.50 E-value=7.4e-05 Score=67.42 Aligned_cols=72 Identities=10% Similarity=0.181 Sum_probs=43.1
Q ss_pred ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
|.+.++.++. +.. ...+++|++|++++|.++. +. ...++|+.|++++| .++. +..+ ..+++|+.|.++
T Consensus 136 L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n-~l~~--l~~~-~~l~~L~~L~l~ 203 (454)
T 1jl5_A 136 LGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNN-QLEE--LPEL-QNLPFLTAIYAD 203 (454)
T ss_dssp EECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSS--CCCC-TTCTTCCEEECC
T ss_pred EECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCC-cCCc--Cccc-cCCCCCCEEECC
Confidence 4445555443 222 3367888888888887653 11 22457888888875 4543 2222 456777777776
Q ss_pred eccC
Q 026286 83 MHPL 86 (240)
Q Consensus 83 ~~~~ 86 (240)
.|.+
T Consensus 204 ~N~l 207 (454)
T 1jl5_A 204 NNSL 207 (454)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 6654
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.45 E-value=3.1e-05 Score=60.69 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=59.5
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
.++|+.|+|++|.|+.-. ......+++|+.|+|++| +++.- ...+...+++|+.|.|+.|.+.... . ..
T Consensus 32 ~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~----~----~~ 100 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDNHLKSIP----R----GA 100 (174)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC----T----TT
T ss_pred CCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCCccceeC----H----HH
Confidence 468999999999776421 223347899999999986 56541 1223356789999999888664211 1 11
Q ss_pred HhcCCCCCEEEeeCcccC
Q 026286 102 ASTMPKLKRLEMAYHVIS 119 (240)
Q Consensus 102 ~~~~~~L~~L~L~~~~it 119 (240)
...+++|++|+|++|.++
T Consensus 101 ~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTCTTCSEEECCSSCBC
T ss_pred hccccCCCEEEeCCCCcc
Confidence 236899999999999865
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.30 E-value=1.5e-05 Score=68.76 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=28.7
Q ss_pred CCCCCcEEEeeC-CCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~-~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|+.|+|++ |.|+.-. ......+++|+.|+|++| +++.-. ......+++|+.|.|+.|.+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCcc
Confidence 344566666654 5444211 011224556666666654 344311 11123455666666655544
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=7e-06 Score=70.67 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=82.0
Q ss_pred CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286 22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 101 (240)
Q Consensus 22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i 101 (240)
..+++.+.+.+. +....+..+...|++|+.|+|++| .++.-. ......|++|+.|.+..+ +... ... ++
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~n-i~~I----~~~---aF 269 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPHN-LKTI----GQR---VF 269 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCTT-CCEE----CTT---TT
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCcc-ccee----hHH---Hh
Confidence 457777877664 566667777777999999999985 354322 223357899999999654 2211 111 12
Q ss_pred HhcCCCCC-EEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286 102 ASTMPKLK-RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 162 (240)
Q Consensus 102 ~~~~~~L~-~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 162 (240)
..|++|+ .|.|.. .++.-+- ....+|++|+.|++.++...+....++ ..|++|+.+.
T Consensus 270 -~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 270 -SNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp -TTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred -hCChhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence 3788999 999987 4332111 223589999999997766554455444 5677887764
No 152
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.25 E-value=4.7e-06 Score=72.44 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=32.5
Q ss_pred cccchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHH-HHhcCccCcEEEecCCC
Q 026286 8 FLCADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQ-IAGRLSAVTFLDLSYCS 59 (240)
Q Consensus 8 ~~~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~-l~~~~~~L~~L~Ls~c~ 59 (240)
+.|++..|..|-.. .+++++|+|++|+|+. +.. ....+++|++|+|++|.
T Consensus 14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLPRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp EEEESTTCCSCCTTCCTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCT
T ss_pred EEecCCCCCccCcCcCCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCC
Confidence 44555555544333 3578999999998764 221 23468889999998864
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.90 E-value=9.2e-06 Score=70.58 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=26.5
Q ss_pred CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
.+++|+.|.+++|.|+...-.. .....++..|+++++..++.-...++......++.|.++.|.+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred hccccccccccccccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 3455566666555443210000 0123344455554443333211111222224566666665544
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.69 E-value=0.00048 Score=59.19 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=70.3
Q ss_pred cEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286 26 QTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 104 (240)
Q Consensus 26 ~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~ 104 (240)
+.++++++ +++. +.. ...+++|+.|+|+++++++.-.. .....+++|+.|.|+.|.+.... . .....
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~----~----~~~~~ 78 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVA----P----DAFHF 78 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEEC----T----TGGGS
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeC----H----HHhcC
Confidence 45677776 6765 445 55788999999996346664221 22346799999999988653211 0 11237
Q ss_pred CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286 105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 144 (240)
Q Consensus 105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v 144 (240)
+++|++|+|++|.|+.-. ..++..++ |+.|+|.++...
T Consensus 79 l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCCcc
Confidence 899999999999977311 12233344 999999987754
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.37 E-value=0.00046 Score=61.33 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=26.9
Q ss_pred cCCCCCEEEeeCcccCHHHH----HHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 104 TMPKLKRLEMAYHVISTEIV----LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 104 ~~~~L~~L~L~~~~it~~~l----~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
.|++|+.|.+.++.++...+ .....+|++|+.|.|... .......++ ..|++|+.+..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF-~~c~~L~~l~l 330 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLL-GGNRKVTQLTI 330 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTT-TTCCSCCEEEE
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhh-cCCCCccEEEE
Confidence 55666666666654321000 112345666666666531 111122222 45566665544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.21 E-value=0.003 Score=56.03 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=29.9
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 82 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 82 (240)
..|++|+.+.|+.++++.-+-..+ .+++|+.+.|..+ ++.-+-.+ ...|++|+.+.+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF--~~~~L~~l~lp~~--l~~I~~~a-F~~~~~L~~l~l~ 234 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTF--VYAGIEEVLLPVT--LKEIGSQA-FLKTSQLKTIEIP 234 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTT--TTCCCSEEECCTT--CCEECTTT-TTTCTTCCCEECC
T ss_pred hCcccCCeeecCCCcceEechhhE--eecccCEEEeCCc--hheehhhH-hhCCCCCCEEecC
Confidence 357888888887765543111112 2566777766542 22111111 2345666666664
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.67 E-value=0.021 Score=49.91 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=52.5
Q ss_pred CCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 21 SAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 21 ~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
.|.+|+.+.++.. .|.. .....|++|+.+.+.. .++.-+- .....|++|+.+.+..+ +.. +.+.
T Consensus 263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~~-v~~----I~~~-- 328 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDIPEG-ITQ----ILDD-- 328 (394)
T ss_dssp TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCTT-CCE----ECTT--
T ss_pred ecccccEEecccccceecC----cccccccccccccCCC--cccccCc-eeecCCCCcCEEEeCCc-ccE----ehHh--
Confidence 5677777777665 2222 1123577777777754 2322111 12245777777777422 111 1111
Q ss_pred HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286 99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C 141 (240)
++ ..|.+|+.+.|..+ ++.-+-.+ ..+|++|+.+.+.+.
T Consensus 329 -aF-~~C~~L~~i~ip~s-v~~I~~~a-F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 -AF-AGCEQLERIAIPSS-VTKIPESA-FSNCTALNNIEYSGS 367 (394)
T ss_dssp -TT-TTCTTCCEEEECTT-CCBCCGGG-GTTCTTCCEEEESSC
T ss_pred -Hh-hCCCCCCEEEECcc-cCEEhHhH-hhCCCCCCEEEECCc
Confidence 11 26677777777543 22111111 347777887777653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.35 E-value=0.029 Score=49.03 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=59.7
Q ss_pred hCCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 20 ASAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 20 ~~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
..|++|+.+.++.. .|.+. ....|++|+.+.|... ++.-+-.+ ...|++|+.+.+..+ +.. +..
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~a-F~~C~~L~~i~ip~s-v~~----I~~-- 350 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG--ITQILDDA-FAGCEQLERIAIPSS-VTK----IPE-- 350 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEECTT-CCB----CCG--
T ss_pred ccccccccccCCCcccccCce----eecCCCCcCEEEeCCc--ccEehHhH-hhCCCCCCEEEECcc-cCE----EhH--
Confidence 46899999999764 34332 2347999999999763 33211122 357899999999532 221 111
Q ss_pred HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC
Q 026286 98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~ 140 (240)
.++ ..|++|+.+.+.++.... . -...|..|+.|.+..
T Consensus 351 -~aF-~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 351 -SAF-SNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAP 387 (394)
T ss_dssp -GGG-TTCTTCCEEEESSCHHHH---H-TCBCCCCC-------
T ss_pred -hHh-hCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCC
Confidence 122 389999999999875321 2 234688888887643
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.65 E-value=0.0083 Score=52.55 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=60.0
Q ss_pred hCCCCCcEEEeeCCC--CCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 20 ASAGSLQTLRLPRSE--MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~--itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
..|.+|+.+.++.+. |.. .....|+.|+.+.+... .+... ....|++|+.+.+..+ +... .+.
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~~~-~i~~~----~F~~~~~L~~i~l~~~-i~~I----~~~- 314 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYGSV-IVPEK----TFYGCSSLTEVKLLDS-VKFI----GEE- 314 (394)
T ss_dssp TTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEECSS-EECTT----TTTTCTTCCEEEECTT-CCEE----CTT-
T ss_pred cccccceeEEcCCCcceeec----cccccccccceeccCce-eeccc----cccccccccccccccc-ccee----chh-
Confidence 367888988887762 222 11235677777766542 22221 2345677777777422 1111 111
Q ss_pred HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286 98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
+ ...|++|+.+.|..+ ++.-+-. ...+|.+|+.+.+... ..+....+. ..|++|+.+..
T Consensus 315 --a-F~~c~~L~~i~lp~~-v~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF-~~C~~L~~i~l 373 (394)
T 4fs7_A 315 --A-FESCTSLVSIDLPYL-VEEIGKR-SFRGCTSLSNINFPLS-LRKIGANAF-QGCINLKKVEL 373 (394)
T ss_dssp --T-TTTCTTCCEECCCTT-CCEECTT-TTTTCTTCCEECCCTT-CCEECTTTB-TTCTTCCEEEE
T ss_pred --h-hcCCCCCCEEEeCCc-ccEEhHH-hccCCCCCCEEEECcc-ccEehHHHh-hCCCCCCEEEE
Confidence 1 125667777776533 2211111 1236777777777543 111123232 45666666544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.44 E-value=0.024 Score=49.10 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286 21 SAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 98 (240)
Q Consensus 21 ~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~ 98 (240)
.+.+|+.+.++.+ .|.. .....|++|+.+.+... ++.-+- .....|.+|+.+.+..+ +.. +. .
T Consensus 215 ~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~-i~~----i~---~ 279 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAK-VKT----VP---Y 279 (379)
T ss_dssp TCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCC-CSE----EC---T
T ss_pred cccccceeeeccceeEEcc----ccccCCccceEEEcCCC--ccEeCc-cccceeehhcccccccc-cee----cc---c
Confidence 4566777766554 1221 11235777888887652 332111 12345777888877432 111 00 0
Q ss_pred HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC-CCCCCCChHHHHhcCCCCccccC
Q 026286 99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG-CWDVKLDDKFMKGNFPNLKVLGP 163 (240)
Q Consensus 99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~-C~~v~~~~~~l~~~~~~L~~L~~ 163 (240)
. ....|++|+.+.+.++.++.-+-. ...+|.+|+.+.|.. ...+ ...+. ..|.+|+.+..
T Consensus 280 ~-aF~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~~l~~I--~~~aF-~~C~~L~~i~i 340 (379)
T 4h09_A 280 L-LCSGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSVTLPTALKTI--QVYAF-KNCKALSTISY 340 (379)
T ss_dssp T-TTTTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEE--CTTTT-TTCTTCCCCCC
T ss_pred c-ccccccccccccccccccceehhh-hhcCCCCCCEEEcCccccEE--HHHHh-hCCCCCCEEEE
Confidence 1 123678888888877654422211 234788888888853 2222 33333 56677776654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=83.05 E-value=0.044 Score=47.38 Aligned_cols=102 Identities=12% Similarity=0.224 Sum_probs=65.0
Q ss_pred hCCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286 20 ASAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 97 (240)
Q Consensus 20 ~~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~ 97 (240)
..|.+|+.+.++.+ .|.. .....|.+|+.+.+... ++.-+- .....|++|+.+.+..+.+...+ +.
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~----~~- 304 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAK--VKTVPY-LLCSGCSNLTKVVMDNSAIETLE----PR- 304 (379)
T ss_dssp TTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCC--CSEECT-TTTTTCTTCCEEEECCTTCCEEC----TT-
T ss_pred cCCccceEEEcCCCccEeCc----cccceeehhcccccccc--ceeccc-cccccccccccccccccccceeh----hh-
Confidence 36889999999876 2332 12346899999999752 332111 22357899999999654332211 11
Q ss_pred HHHHHhcCCCCCEEEeeCcc--cCHHHHHHHHhcCCcccEEeccC
Q 026286 98 ANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRG 140 (240)
Q Consensus 98 ~~~i~~~~~~L~~L~L~~~~--it~~~l~~l~~~c~~Le~LdL~~ 140 (240)
++ ..|++|+.+.|..+- |... + ..+|++|+.+.+..
T Consensus 305 --aF-~~c~~L~~i~lp~~l~~I~~~---a-F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 305 --VF-MDCVKLSSVTLPTALKTIQVY---A-FKNCKALSTISYPK 342 (379)
T ss_dssp --TT-TTCTTCCEEECCTTCCEECTT---T-TTTCTTCCCCCCCT
T ss_pred --hh-cCCCCCCEEEcCccccEEHHH---H-hhCCCCCCEEEECC
Confidence 12 378999999996542 4332 2 34899999998853
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.76 E-value=0.055 Score=47.23 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=65.6
Q ss_pred hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286 20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99 (240)
Q Consensus 20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~ 99 (240)
..|+.|+.+.+....+... ....|++|+.+.+... ++.-+-.+ ...|++|+.+.+..+ +... .. .
T Consensus 273 ~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~--i~~I~~~a-F~~c~~L~~i~lp~~-v~~I----~~---~ 337 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS--VKFIGEEA-FESCTSLVSIDLPYL-VEEI----GK---R 337 (394)
T ss_dssp TTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTT--CCEECTTT-TTTCTTCCEECCCTT-CCEE----CT---T
T ss_pred ccccccceeccCceeeccc----cccccccccccccccc--cceechhh-hcCCCCCCEEEeCCc-ccEE----hH---H
Confidence 3577788877766544331 2346888888888652 33211112 346788888888522 2111 11 1
Q ss_pred HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccc
Q 026286 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161 (240)
Q Consensus 100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L 161 (240)
++ ..|++|+.+.|..+ ++.-+-. ...+|++|+.+.|...-.. -.... ..|++|+.+
T Consensus 338 aF-~~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~lp~~~~~--~~~~F-~~c~~L~~I 393 (394)
T 4fs7_A 338 SF-RGCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVELPKRLEQ--YRYDF-EDTTKFKWI 393 (394)
T ss_dssp TT-TTCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEEEGGGGG--GGGGB-CTTCEEEEE
T ss_pred hc-cCCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEECCCCEE--hhhee-cCCCCCcEE
Confidence 12 26788888888655 2221111 2357888998888653222 11111 455666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.51 E-value=0.32 Score=35.73 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.6
Q ss_pred cCCCCCEEEeeCcc
Q 026286 104 TMPKLKRLEMAYHV 117 (240)
Q Consensus 104 ~~~~L~~L~L~~~~ 117 (240)
.+++|+.|+|++|.
T Consensus 53 ~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 53 ALPALRTAHLGANP 66 (130)
T ss_dssp GCTTCCEEECCSSC
T ss_pred hccccCEEEecCCC
Confidence 34444555554444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=77.72 E-value=0.21 Score=36.82 Aligned_cols=36 Identities=17% Similarity=0.020 Sum_probs=19.1
Q ss_pred cCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286 49 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 86 (240)
Q Consensus 49 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 86 (240)
+|+.|+|++| +|+.-. ..+...+++|+.|.|+.|++
T Consensus 32 ~l~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTS-CCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCC-cCCccC-hhhhhhccccCEEEecCCCe
Confidence 5667777664 343211 12233456677777766654
No 165
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=43.51 E-value=4.9 Score=34.47 Aligned_cols=44 Identities=5% Similarity=-0.067 Sum_probs=21.2
Q ss_pred cccchhcHHHHHhCCCCCcEEEe-------eCCCCCHHHHHHHHhcCccCc
Q 026286 8 FLCADVDLFPGSASAGSLQTLRL-------PRSEMSDSIVAQIAGRLSAVT 51 (240)
Q Consensus 8 ~~~tD~~L~~i~~~~~~L~~L~L-------~~~~itd~~l~~l~~~~~~L~ 51 (240)
..++.+.+..+....|.+..-++ ...+++...+..+..++|.+=
T Consensus 56 ~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL 106 (335)
T 4fp9_B 56 MGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLL 106 (335)
T ss_dssp TTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGG
T ss_pred CCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhc
Confidence 34555555555555554421111 112556666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.90 E-value=38 Score=23.21 Aligned_cols=13 Identities=0% Similarity=0.166 Sum_probs=6.5
Q ss_pred CCCCCcEEEeeCC
Q 026286 21 SAGSLQTLRLPRS 33 (240)
Q Consensus 21 ~~~~L~~L~L~~~ 33 (240)
.|.+|+++.|+.+
T Consensus 18 ~c~~L~~i~iP~~ 30 (100)
T 2lz0_A 18 GNTVIREITVQPN 30 (100)
T ss_dssp TCTTCCCEEECTT
T ss_pred CCCCCcEEEcCCc
Confidence 3455555555543
Done!