Query 026287
Match_columns 240
No_of_seqs 154 out of 1086
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 100.0 6.6E-50 1.4E-54 335.1 19.5 150 83-232 2-151 (152)
2 PLN02642 copper, zinc superoxi 100.0 2.7E-49 5.9E-54 335.0 19.5 151 82-232 7-157 (164)
3 KOG0441 Cu2+/Zn2+ superoxide d 100.0 1.7E-43 3.8E-48 295.1 14.7 149 84-232 3-153 (154)
4 PRK15388 Cu/Zn superoxide dism 100.0 3.7E-41 8.1E-46 288.2 19.0 134 90-230 34-176 (177)
5 cd00305 Cu-Zn_Superoxide_Dismu 100.0 6.7E-41 1.5E-45 277.2 17.7 141 83-230 1-142 (144)
6 PRK10290 superoxide dismutase; 100.0 1.4E-40 2.9E-45 284.1 18.5 132 91-230 33-173 (173)
7 PF00080 Sod_Cu: Copper/zinc s 100.0 1.5E-40 3.2E-45 272.4 15.3 139 85-229 1-142 (142)
8 COG2032 SodC Cu/Zn superoxide 100.0 2.9E-37 6.3E-42 263.5 16.7 142 84-230 30-179 (179)
9 PLN02957 copper, zinc superoxi 100.0 1.3E-35 2.8E-40 263.6 17.0 130 82-234 80-209 (238)
10 KOG4656 Copper chaperone for s 100.0 2E-34 4.3E-39 251.0 10.3 137 84-235 83-219 (247)
11 cd00305 Cu-Zn_Superoxide_Dismu 72.5 2.9 6.4E-05 34.5 2.4 14 213-226 131-144 (144)
12 smart00754 CHRD A domain in th 72.3 18 0.0004 28.3 6.8 37 94-130 19-55 (118)
13 PF07452 CHRD: CHRD domain; I 65.0 46 0.001 25.8 7.7 35 95-129 20-55 (119)
14 PF09559 Cas6: Cas6 Crispr; I 26.2 46 0.001 29.5 2.0 39 190-232 152-191 (195)
15 PF07731 Cu-oxidase_2: Multico 24.7 71 0.0015 25.0 2.7 21 110-130 43-63 (138)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=6.6e-50 Score=335.08 Aligned_cols=150 Identities=63% Similarity=1.016 Sum_probs=144.9
Q ss_pred ceeEEEEcCCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 026287 83 KKAVAVLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAG 162 (240)
Q Consensus 83 ~~AVA~l~g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~G 162 (240)
++|+|+|++++.|+|+|+|+|..++.+.|+++++||+||+|+|||||+|||+++|.|+|+||||.++.|+.|+++.||+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~G 81 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAG 81 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccc
Confidence 57999999988899999999988777999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEecc
Q 026287 163 DLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKY 232 (240)
Q Consensus 163 DLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~~~ 232 (240)
|||||+++++|++++++++++++|.++++|+|||||||+++||+++++++.|+++||+|+|||||||++.
T Consensus 82 DLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 82 DLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred cccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=2.7e-49 Score=335.00 Aligned_cols=151 Identities=54% Similarity=0.933 Sum_probs=145.3
Q ss_pred cceeEEEEcCCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 026287 82 AKKAVAVLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHA 161 (240)
Q Consensus 82 ~~~AVA~l~g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~ 161 (240)
-++|+|++++.+.|.|+|+|+|..++.++|+++|+||+||+|+|||||+|||+++|.|+|+||||.++.||.|++..||+
T Consensus 7 ~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~ 86 (164)
T PLN02642 7 NLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHA 86 (164)
T ss_pred CeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCcc
Confidence 46799999998889999999998877799999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEecc
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKY 232 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~~~ 232 (240)
||||||+++++|+++++++++.++|.++++|+|||||||+.+|||++++++.|+++||+|+|||||||++.
T Consensus 87 GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~ 157 (164)
T PLN02642 87 GDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157 (164)
T ss_pred cccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCcccccccCCCCCceEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964
No 3
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=295.12 Aligned_cols=149 Identities=58% Similarity=0.943 Sum_probs=142.9
Q ss_pred eeEEEEcCCC-ceEEEEEEEEeCC-CcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 026287 84 KAVAVLKGTS-NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHA 161 (240)
Q Consensus 84 ~AVA~l~g~~-~V~G~V~ftq~~~-G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~ 161 (240)
+|++++++.. .|.|+|.|+|... .++.|++.|+||+||.|+||||+|||.+++|.|+|+||||.++.||.|.++.||.
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~ 82 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHV 82 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCcccccccc
Confidence 7899999975 7999999999543 3899999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEecc
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKY 232 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~~~ 232 (240)
||||||.++++|.+...+.|.+++|+|+++|+||++|||+.+||+++|.++.|+.+||+|+|+|||+|+..
T Consensus 83 gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~G~~~~s~ktgnag~r~aCgvi~~~ 153 (154)
T KOG0441|consen 83 GDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGKGGHELSKKTGNAGARPACGVIGIA 153 (154)
T ss_pred ccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccCCchhhhhhccccCCCccceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864
No 4
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=3.7e-41 Score=288.24 Aligned_cols=134 Identities=29% Similarity=0.574 Sum_probs=121.4
Q ss_pred cCCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCC----C----CCCCCcccCCCCC-CCCCCCCCCCC
Q 026287 90 KGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTN----G----CMSTGAHFNPNNM-THGAPKDEVRH 160 (240)
Q Consensus 90 ~g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~----g----C~SaGgHfNP~~~-~hg~P~~~~~h 160 (240)
++.+++.|+|+|+|..++ ++|+++++||+||+|+|||||+|||+. + |.|+||||||.+. .|+.|++..+|
T Consensus 34 ~~~g~~~G~v~f~~~~~g-v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H 112 (177)
T PRK15388 34 SGTGENIGEITVSETPYG-LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGH 112 (177)
T ss_pred CCCCceEEEEEEEEcCCc-EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCC
Confidence 456789999999999877 899999999999999999999999973 3 8999999999997 79999888899
Q ss_pred CCccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEe
Q 026287 161 AGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHK 230 (240)
Q Consensus 161 ~GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~ 230 (240)
+||||||+++++|++++.++++.+. +.++|+|||||||+++|||++ .++++||+|+|||||||+
T Consensus 113 ~GDLpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa~~DD~~~----~p~~~GnaG~RiACGVI~ 176 (177)
T PRK15388 113 LGDLPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHKGGDNYSD----KPAPLGGGGARFACGVIE 176 (177)
T ss_pred cCcCcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEECCCCCCCC----CCCcCCCCCceEEEEeec
Confidence 9999999999999999999998764 347999999999999999975 256789999999999996
No 5
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=6.7e-41 Score=277.18 Aligned_cols=141 Identities=54% Similarity=0.891 Sum_probs=130.7
Q ss_pred ceeEEEEcCCC-ceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 026287 83 KKAVAVLKGTS-NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHA 161 (240)
Q Consensus 83 ~~AVA~l~g~~-~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~ 161 (240)
++|+++|++.. +|+|+|+|+|..+ .++|+++++||+||.|+|||||+|||+++|.|+|+||||.++.|+.|++..||+
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~-~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~ 79 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG-GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHA 79 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC-CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCC
Confidence 46899999863 7999999999987 599999999999999999999999999999999999999999999999999999
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEe
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHK 230 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~ 230 (240)
||||||+++++|+++++|++++++|++.++++|||||||+.+||+.+ ++.|++|.|++||+|.
T Consensus 80 GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~------~p~~~sg~~~~~G~~~ 142 (144)
T cd00305 80 GDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGK------GPDELSGGTGNAGVRV 142 (144)
T ss_pred CcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCC------CCCcccccceeeEeEE
Confidence 99999999999999999999999999889999999999999999864 5677888888888873
No 6
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=1.4e-40 Score=284.08 Aligned_cols=132 Identities=33% Similarity=0.627 Sum_probs=119.0
Q ss_pred CCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCC----CC----CCCCCcccCCCCC-CCCCCCCCCCCC
Q 026287 91 GTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTT----NG----CMSTGAHFNPNNM-THGAPKDEVRHA 161 (240)
Q Consensus 91 g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s----~g----C~SaGgHfNP~~~-~hg~P~~~~~h~ 161 (240)
+.+++.|+|+|+|..++ ++|+++++||+||+|+|||||+|||+ ++ |.|+|+||||.+. .|+.|++ .+|+
T Consensus 33 ~~g~~~G~v~f~~~~~g-v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~ 110 (173)
T PRK10290 33 GVGQSIGSVTITETDKG-LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHL 110 (173)
T ss_pred CCCceEEEEEEEEcCCc-EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCc
Confidence 35789999999999877 99999999999999999999999997 33 8999999999998 7888874 6899
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEe
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHK 230 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~ 230 (240)
||||||+++++|+++++++++.+. +.++|+|||||||+++|||++. ++++||+|+|||||||.
T Consensus 111 GDL~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~~~DD~~~~----~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 111 GDLPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHVGGDNMSDQ----PKPLGGGGERYACGVIK 173 (173)
T ss_pred CcccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEECCCCCCCCC----CCcCCCCcceEEEEeEC
Confidence 999999999999999999998764 3589999999999999999753 57899999999999994
No 7
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=1.5e-40 Score=272.37 Aligned_cols=139 Identities=52% Similarity=0.910 Sum_probs=129.8
Q ss_pred eEEEEcCC-CceEEEEEEEEeCCC-cEEEEEEecCCCCcceEEEEeccCCC-CCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 026287 85 AVAVLKGT-SNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDT-TNGCMSTGAHFNPNNMTHGAPKDEVRHA 161 (240)
Q Consensus 85 AVA~l~g~-~~V~G~V~ftq~~~G-~t~V~v~itGL~pG~Hg~HIHe~Gd~-s~gC~SaGgHfNP~~~~hg~P~~~~~h~ 161 (240)
|+|+|+++ ++|+|+|+|+|..++ .+.|+++++||++|.|+|||||+|++ +++|.++|+||||.++.|+.|+...|+.
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 79999964 579999999999854 59999999999999999999999999 7899999999999999999998888999
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEE
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMH 229 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI 229 (240)
|||++++++.+|.++..|+|.+++|+|.++|+|||||||+++||+ .++++|++|+|||||+|
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~------~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDF------TSQPTGNAGARLACGVI 142 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTT------THHHHTTTTSEEEEEEE
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCc------ccccCCCCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999987 47889999999999998
No 8
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-37 Score=263.55 Aligned_cols=142 Identities=42% Similarity=0.680 Sum_probs=128.3
Q ss_pred eeEEEEc-CCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCC------CCCCCCcccCCC-CCCCCCCC
Q 026287 84 KAVAVLK-GTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTN------GCMSTGAHFNPN-NMTHGAPK 155 (240)
Q Consensus 84 ~AVA~l~-g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~------gC~SaGgHfNP~-~~~hg~P~ 155 (240)
++.+.+. +.++..|.|++++.+.+ +.++..+.||+||+|+|||||+|+|+. +|.|+||||||. ..+|+.|+
T Consensus 30 ~~~~~~~~~~G~~vG~vt~~e~~~g-~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~ 108 (179)
T COG2032 30 KANAVLVDGTGKDVGTVTITETGYG-LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPN 108 (179)
T ss_pred cceeeccCCCCceeEEEEEeecCCc-eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCC
Confidence 3444443 34578899999999988 999999999999999999999999986 599999999999 68999999
Q ss_pred CCCCCCCccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEe
Q 026287 156 DEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHK 230 (240)
Q Consensus 156 ~~~~h~GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~ 230 (240)
++..|.|||+||++++||.++..++++.+++.+..++.|||||||+.+|||.+.+ .|+|++|+|+|||||+
T Consensus 109 ~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~~~P----~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 109 ADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYSTQP----EPLGGAGARVACGVIK 179 (179)
T ss_pred CCCCCcCcCcceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCccccCCC----ccCCCCccceeeeeeC
Confidence 9899999999999999999999999999999999999999999999999997532 2399999999999995
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=1.3e-35 Score=263.58 Aligned_cols=130 Identities=31% Similarity=0.517 Sum_probs=118.3
Q ss_pred cceeEEEEcCCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q 026287 82 AKKAVAVLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHA 161 (240)
Q Consensus 82 ~~~AVA~l~g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~ 161 (240)
..+||+.++|. .|.|+|+|+|..++.+.|+++|+||+||.|+|||||+|||+++|.|+|+||||.++.|+ .+|.
T Consensus 80 ~~~av~~~~g~-~v~G~v~~~~~~~~~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~ 153 (238)
T PLN02957 80 VSAAVAEFKGP-DIFGVVRFAQVSMELARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPL 153 (238)
T ss_pred cceEEEEecCC-ceEEEEEEEEcCCCCEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCC
Confidence 35689999986 59999999998876699999999999999999999999999999999999999999997 6899
Q ss_pred CccCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEecccc
Q 026287 162 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKYLT 234 (240)
Q Consensus 162 GDLGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~~~~~ 234 (240)
||||||+++++|++++++.++.++| ++|+|||||||+.+|+. +.+++||||+|+++
T Consensus 154 GDLgni~~~~~G~a~~~~~~~~~~l---~~iiGrs~vih~~~D~~--------------~~~~~~gvi~rsag 209 (238)
T PLN02957 154 GDLGTLEADENGEATFSGTKEKLKV---WDLIGRSLAVYATADKS--------------GPGIAAAVIARSAG 209 (238)
T ss_pred CccCCEEeCCCceEEEEEECCCcCc---cccCCcEEEEEeCCCCC--------------CCCeEEEEEecccc
Confidence 9999999999999999999998887 59999999999998852 23599999999876
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=251.01 Aligned_cols=137 Identities=44% Similarity=0.754 Sum_probs=125.3
Q ss_pred eeEEEEcCCCceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEeccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCc
Q 026287 84 KAVAVLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGD 163 (240)
Q Consensus 84 ~AVA~l~g~~~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~Gd~s~gC~SaGgHfNP~~~~hg~P~~~~~h~GD 163 (240)
.+++.++++..|.|+|+|.|.....++|+.+++||+||.|+||||||||.+++|.|+|.||||++..||+|.. ||
T Consensus 83 at~a~~~~~~~v~GvvRf~qvt~ek~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~-----gD 157 (247)
T KOG4656|consen 83 ATVAKYTGPQAVQGVVRFVQVTEEKTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNE-----GD 157 (247)
T ss_pred HHHHHhcCCccceeEEEEEEeccccEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCc-----cc
Confidence 3456667777899999999999777999999999999999999999999999999999999999999998864 99
Q ss_pred cCCeEECCCCeEEEEEEEceeeeCCCCCCCcceEEEecCCCCCCCCCCCCcccCCCCCCeEEEEEEeccccc
Q 026287 164 LGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKYLTQ 235 (240)
Q Consensus 164 LGnI~a~~~G~a~~~~~d~~l~L~G~~sIiGRSIVIH~~~DD~g~g~~~~s~~tGnaG~RlACGvI~~~~~~ 235 (240)
|||+.+|++|++.+++.|.+|+.| ++||||+||.+..||++ +++ ||+|.|++||||.|+++-
T Consensus 158 LGn~~ad~nGraf~s~~de~Lkvw---dlIGRsvVi~k~~ddlg--g~p-----~nsge~la~gvIARSAGv 219 (247)
T KOG4656|consen 158 LGNNRADKNGRAFFSAPDEKLKVW---DLIGRSVVISKSLDDLG--GEP-----GNSGERLACGVIARSAGV 219 (247)
T ss_pred ccccccccCCcEEEecccccccHh---hhhceeEEEeccccccC--CCC-----CCcCcceeEEEeeecccc
Confidence 999999999999999999999995 99999999999999984 332 899999999999999863
No 11
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=72.50 E-value=2.9 Score=34.51 Aligned_cols=14 Identities=71% Similarity=0.945 Sum_probs=12.2
Q ss_pred CcccCCCCCCeEEE
Q 026287 213 LSLTTGNAGGRLAC 226 (240)
Q Consensus 213 ~s~~tGnaG~RlAC 226 (240)
.|..+|++|.|+||
T Consensus 131 ~sg~~~~~G~~~ac 144 (144)
T cd00305 131 LSGGTGNAGVRVAC 144 (144)
T ss_pred ccccceeeEeEEeC
Confidence 36788999999999
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=72.30 E-value=18 Score=28.32 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.8
Q ss_pred ceEEEEEEEEeCCCcEEEEEEecCCCCcceEEEEecc
Q 026287 94 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEY 130 (240)
Q Consensus 94 ~V~G~V~ftq~~~G~t~V~v~itGL~pG~Hg~HIHe~ 130 (240)
.-.|.+.|+-.+++.+..++.++||..-.-..|||+-
T Consensus 19 ~a~G~a~~~l~~~~~l~y~i~~~gl~~~~~~~hih~~ 55 (118)
T smart00754 19 GAVGGAWFTLDDDGSLHYQVTLSGLSGPETAAHIHEG 55 (118)
T ss_pred CcEEEEEEEECCCCEEEEEEEEcccCCCceeeeEecc
Confidence 4578888887755668889999999864348999983
No 13
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=64.99 E-value=46 Score=25.79 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.3
Q ss_pred eEEEEEEEEeCCC-cEEEEEEecCCCCcceEEEEec
Q 026287 95 VEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHE 129 (240)
Q Consensus 95 V~G~V~ftq~~~G-~t~V~v~itGL~pG~Hg~HIHe 129 (240)
-.|.+.|+-..++ .+.+++.++||....-.+|||.
T Consensus 20 a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 20 ASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 4688888877765 6789999999977779999998
No 14
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=26.18 E-value=46 Score=29.48 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCCCcceEEEecCCCCCCCCCCCCcccCC-CCCCeEEEEEEecc
Q 026287 190 NTVVGRAFVVHELEDDLGKGGHELSLTTG-NAGGRLACGMHKKY 232 (240)
Q Consensus 190 ~sIiGRSIVIH~~~DD~g~g~~~~s~~tG-naG~RlACGvI~~~ 232 (240)
..|.|||++||....+-+ -+=|..| ....++.||+.-.-
T Consensus 152 ~~v~g~sL~v~~L~~e~S----l~LQ~~GLG~~r~mGCGlFiPh 191 (195)
T PF09559_consen 152 GTVVGRSLMVAGLSPEDS----LRLQEQGLGGKRHMGCGLFIPH 191 (195)
T ss_pred cceEEEEEEecCCChhhc----eeehhhccCCCcccceeEeccC
Confidence 578999999999754311 0113344 33567999987543
No 15
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=24.72 E-value=71 Score=24.98 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.3
Q ss_pred EEEEEecCCCCcceEEEEecc
Q 026287 110 TVNVRVTGLTPGPHGFHLHEY 130 (240)
Q Consensus 110 ~V~v~itGL~pG~Hg~HIHe~ 130 (240)
.|++.+.+.....|.||+|-+
T Consensus 43 ~v~~~l~N~~~~~Hp~HlHG~ 63 (138)
T PF07731_consen 43 VVEIVLQNNGSMPHPFHLHGH 63 (138)
T ss_dssp EEEEEEEECTTSSEEEEETTS
T ss_pred EEEEEEECCCCCccceEEEee
Confidence 567777776677899999964
Done!