Query 026288
Match_columns 240
No_of_seqs 151 out of 655
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858 Predicted membrane pro 100.0 7.1E-63 1.5E-67 415.1 19.9 208 1-210 2-210 (239)
2 PF04511 DER1: Der1-like famil 100.0 3.7E-53 8E-58 356.1 18.4 192 11-202 1-197 (197)
3 COG5291 Predicted membrane pro 100.0 1.6E-45 3.5E-50 309.2 12.0 201 6-208 11-215 (313)
4 KOG2632 Rhomboid family protei 99.7 3.5E-16 7.7E-21 134.2 15.0 177 3-185 6-195 (258)
5 PRK10907 intramembrane serine 99.2 7.9E-11 1.7E-15 103.8 11.8 166 10-187 92-269 (276)
6 COG0705 Membrane associated se 99.1 1.5E-09 3.2E-14 92.9 12.4 171 11-186 16-209 (228)
7 PTZ00101 rhomboid-1 protease; 99.1 1.6E-09 3.5E-14 95.5 11.2 97 10-111 51-157 (278)
8 PF01694 Rhomboid: Rhomboid fa 98.9 1.2E-09 2.5E-14 86.5 5.4 133 48-186 2-140 (145)
9 KOG4463 Uncharacterized conser 98.6 6.1E-08 1.3E-12 83.4 5.6 191 6-210 6-220 (323)
10 KOG2890 Predicted membrane pro 97.9 7.3E-05 1.6E-09 65.9 9.9 176 8-190 21-221 (326)
11 KOG2289 Rhomboid family protei 97.6 5.8E-05 1.3E-09 67.6 3.6 137 43-193 110-259 (316)
12 PF08551 DUF1751: Eukaryotic i 96.9 0.0014 3.1E-08 49.1 4.2 56 51-110 7-62 (99)
13 KOG2290 Rhomboid family protei 88.3 0.44 9.4E-06 44.9 3.1 37 50-87 449-485 (652)
14 smart00553 SEP Domain present 61.9 4.1 8.8E-05 30.2 1.0 12 229-240 74-85 (93)
15 PF11169 DUF2956: Protein of u 34.5 28 0.00062 26.1 1.8 16 148-163 79-94 (103)
16 KOG2980 Integral membrane prot 31.0 1.3E+02 0.0029 27.1 5.7 145 5-156 108-262 (310)
No 1
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.1e-63 Score=415.06 Aligned_cols=208 Identities=44% Similarity=0.871 Sum_probs=199.7
Q ss_pred CCChHHHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHh
Q 026288 1 MSSPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYG 80 (240)
Q Consensus 1 m~~~~~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~ 80 (240)
++++.+|+.+||||||+++++|+++++++++++++|.+++++|++++||+|+||++|+++++|++++++++|++++|+||
T Consensus 2 ~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~ 81 (239)
T KOG0858|consen 2 NMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS 81 (239)
T ss_pred chhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHH
Q 026288 81 VNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLA 160 (240)
Q Consensus 81 ~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~ 160 (240)
++||++.|+++++||+|+++++++++.+.+. +.+..+|+++++.+++|+|||+||+.+|+++|++++||+|+||++++
T Consensus 82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~--~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~ 159 (239)
T KOG0858|consen 82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGL--FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLG 159 (239)
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHH
Confidence 9999999999999999999999999887775 36788999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHhhccCC-CCCCCcCChHHHHHhhhh
Q 026288 161 LDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPKWVQKLVAR 210 (240)
Q Consensus 161 ~~~l~~~~~~~~l~Gi~~Ghly~~l~~i~P~~-~g~~~l~tP~~~~~l~~~ 210 (240)
++++.+++.+.|++||++||+|+|++|++|.. +|++++|||+|+++++++
T Consensus 160 fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~ 210 (239)
T KOG0858|consen 160 FSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD 210 (239)
T ss_pred HHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence 99999998899999999999999999999995 569999999999999987
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=3.7e-53 Score=356.14 Aligned_cols=192 Identities=47% Similarity=0.946 Sum_probs=181.8
Q ss_pred cChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCC
Q 026288 11 LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFER 90 (240)
Q Consensus 11 iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~ 90 (240)
||||||+++++++++++++.+++++|.++++||+++++|+|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~ 80 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG 80 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhh---hcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHHHHhCC
Q 026288 91 RTADFLWMMIFGALSLLVLSAIPI---FRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS 167 (240)
Q Consensus 91 ~~~dyl~~ll~~~~~i~~~s~~~~---~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~l~~~ 167 (240)
+++||+|+++++++++.+++.+.. .+.+++++++..+++|+|||+||+++|+++|++++|++|+||+++++++++++
T Consensus 81 ~~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~ 160 (197)
T PF04511_consen 81 RSADYLWFLLFGASLILILSLLIGPYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGG 160 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCC
Confidence 999999999999999888886421 24578999999999999999999999999999999999999999999999998
Q ss_pred -CchhHHHHHHHHHHHHHHHhhccCC-CCCCCcCChH
Q 026288 168 -PLVPDLLGIIAGHLYYFLTVLHPLA-TGKNLLKTPK 202 (240)
Q Consensus 168 -~~~~~l~Gi~~Ghly~~l~~i~P~~-~g~~~l~tP~ 202 (240)
+...|++|+++||+|+|++|++|+. +|+|++|||+
T Consensus 161 ~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 161 SSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 7899999999999999999999996 5899999995
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.6e-45 Score=309.23 Aligned_cols=201 Identities=26% Similarity=0.582 Sum_probs=180.4
Q ss_pred HHHhc---cChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288 6 EYYHS---LPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN 82 (240)
Q Consensus 6 ~~~~~---iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~ 82 (240)
+.+.+ ||||||+++++..+++++..+++++|+++++.|.+.+|+.|+||++||+.++++..++.+|++|++|+||++
T Consensus 11 ~llg~~~~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~ 90 (313)
T COG5291 11 FLLGQMLRIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRM 90 (313)
T ss_pred hhhcccccCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 44444 999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHH
Q 026288 83 LEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLGISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALD 162 (240)
Q Consensus 83 LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~ 162 (240)
||+.+|+.+-.||+||++++..++..++.+ ..+...|++++..++.|.|+++||++++++||+|++++||+|+++++++
T Consensus 91 LE~g~f~~~lv~Y~~yl~~~~l~i~a~s~I-~gg~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfs 169 (313)
T COG5291 91 LEEGCFNTSLVEYFWYLLVISLVIFAISNI-YGGISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFS 169 (313)
T ss_pred HhccccCccHHHHHHHHHHHHHHHHHHHHH-hcchhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHH
Confidence 999999877789999999999999888865 3346678999999999999999999999999999999999999999999
Q ss_pred HHhC-CCchhHHHHHHHHHHHHHHHhhccCCCCCCCcCChHHHHHhh
Q 026288 163 VIFG-SPLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLV 208 (240)
Q Consensus 163 ~l~~-~~~~~~l~Gi~~Ghly~~l~~i~P~~~g~~~l~tP~~~~~l~ 208 (240)
++.+ +....+++|+.+||+..++.+++|.. |++...||.|..+++
T Consensus 170 fl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~ 215 (313)
T COG5291 170 FLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLF 215 (313)
T ss_pred HHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccc
Confidence 9998 66799999999999999999999986 334444444444433
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.70 E-value=3.5e-16 Score=134.15 Aligned_cols=177 Identities=18% Similarity=0.312 Sum_probs=135.5
Q ss_pred ChHHHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288 3 SPAEYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN 82 (240)
Q Consensus 3 ~~~~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~ 82 (240)
...++...+|..|-.....+.++.+.+.+..+. ...+.+...++|.|+||++|+.++|.+ -+|+++||..++..+++
T Consensus 6 ~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~ 82 (258)
T KOG2632|consen 6 RVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQ 82 (258)
T ss_pred cCccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhH
Confidence 456788899999998888888888877654444 455667777788999999999999986 89999999999999999
Q ss_pred hccCCCCCCchhHHHHHHHHHH----HHHHHHHhhhhccc--c----hH-HHHHHHHHHHHhhcCCCceeEEEEeecccc
Q 026288 83 LEKGPFERRTADFLWMMIFGAL----SLLVLSAIPIFRSY--F----LG-ISLVFMLVYVWSREFPNSQINIYGLVTLKA 151 (240)
Q Consensus 83 LE~~~f~~~~~dyl~~ll~~~~----~i~~~s~~~~~~~~--~----l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a 151 (240)
.|+.+. .++-++.+..+.++ +.+++... +.... . -| +...++..-+-+-+.|....+++|.+.+|+
T Consensus 83 fE~~~G--~t~~~l~~~~llalf~gIl~ll~~~~-~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~ 159 (258)
T KOG2632|consen 83 FERTHG--TTVRILMFTVLLALFSGILYLLAYHV-FLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPI 159 (258)
T ss_pred HHhhcc--ceehHHHHHHHHHHHHHHHHHHHHHH-HhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccH
Confidence 999984 35566655543322 22222211 11111 1 12 355667777778888999999999999999
Q ss_pred cchHHHHHHH-HHHhCC-CchhHHHHHHHHHHHHHH
Q 026288 152 FYLPWAMLAL-DVIFGS-PLVPDLLGIIAGHLYYFL 185 (240)
Q Consensus 152 ~ylP~~~l~~-~~l~~~-~~~~~l~Gi~~Ghly~~l 185 (240)
++.||++++. +++.++ |++.|++|+++|+.|-+.
T Consensus 160 ~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 160 VLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 9999999987 577775 789999999999999984
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.24 E-value=7.9e-11 Score=103.80 Aligned_cols=166 Identities=21% Similarity=0.298 Sum_probs=104.4
Q ss_pred ccChHHHHHHHHHHHHHHHHhcCcccc--cceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288 10 SLPPICKAYGTLCVAVATVCSLGLLDL--SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP 87 (240)
Q Consensus 10 ~iPpvTR~~~~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~ 87 (240)
+-.|+|-.++++|+++.++..++-... ..+.+.. ...+.+|+||++|+.|.|++ .+|++||++.++..|+.+|+..
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~-~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~ 169 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPF-DPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL 169 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccc-cccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999998876542221 1222222 22346899999999999997 8999999999999999999886
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHH-HHHHH--hhcCCCceeEEEEeecccccchHHHHH--HH
Q 026288 88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFM-LVYVW--SREFPNSQINIYGLVTLKAFYLPWAML--AL 161 (240)
Q Consensus 88 f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~-l~y~w--s~~~p~~~v~l~g~i~i~a~ylP~~~l--~~ 161 (240)
++.+++...+++++...+...+ +.+.++-| ++.+++ +.|.| .++.|+..+ .+|..++.+..+ ++
T Consensus 170 ---G~~~~l~l~l~s~i~~~~~~~~-~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llwl~~ 239 (276)
T PRK10907 170 ---GSGKLIVITLISALLSGWVQSK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLWLVA 239 (276)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHHHHH
Confidence 3556776666666554444432 22333433 333443 34555 445565332 223333332222 11
Q ss_pred HH--HhCCCc--hhHHHHHHHHHHHHHHHh
Q 026288 162 DV--IFGSPL--VPDLLGIIAGHLYYFLTV 187 (240)
Q Consensus 162 ~~--l~~~~~--~~~l~Gi~~Ghly~~l~~ 187 (240)
.+ +.+.++ ..|+.|.++|.+.-+++.
T Consensus 240 g~~~~~g~~Ian~AHlgGli~Gll~g~~~~ 269 (276)
T PRK10907 240 GYFDLFGMSIANAAHVAGLAVGLAMAFWDT 269 (276)
T ss_pred HHHHccCcccHHHHHHHHHHHHHHHHHHhh
Confidence 12 123333 999999999999887764
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-09 Score=92.92 Aligned_cols=171 Identities=23% Similarity=0.259 Sum_probs=124.7
Q ss_pred cChHHHHHHHHHHHHHHHHhcCccccc--------ceeeehHhhhhhc---cchhhhhhhhccCcccHHHHHHHHHHHHH
Q 026288 11 LPPICKAYGTLCVAVATVCSLGLLDLS--------ILALEYKLVFSKF---QVWRLITNFFFLGTFSINFGIRLLMIARY 79 (240)
Q Consensus 11 iPpvTR~~~~~~~~~~ll~~~~~~~p~--------~l~l~~~~v~~~~---q~WRLiT~~f~~g~~~~~~lf~l~~l~~~ 79 (240)
.|++|+..+..++++.+.......... .....+....... |+||++|+.|.|++ -.|+++|+..++.+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f 94 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF 94 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 489999999999999888754322111 0122222222222 89999999999987 89999999999999
Q ss_pred hHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhc---ccchH-HHHHHHHHHHHhhcCCCceeEEEEe-ecccccch
Q 026288 80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR---SYFLG-ISLVFMLVYVWSREFPNSQINIYGL-VTLKAFYL 154 (240)
Q Consensus 80 ~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~---~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~-i~i~a~yl 154 (240)
++.+|+... +..|+.+.+.+++...+.... +.+ .+..| ++.++.++-.++...|..+...... ++.++..+
T Consensus 95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~-~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~ 170 (228)
T COG0705 95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVL-FGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALIL 170 (228)
T ss_pred hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHH-HcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHH
Confidence 999999873 445877777776665555433 211 24555 5678888888999999988887755 67777777
Q ss_pred HHHHHHHHHHhCC-C------chhHHHHHHHHHHHHHHH
Q 026288 155 PWAMLALDVIFGS-P------LVPDLLGIIAGHLYYFLT 186 (240)
Q Consensus 155 P~~~l~~~~l~~~-~------~~~~l~Gi~~Ghly~~l~ 186 (240)
-.+.++.+++++. + ...|+.|++.|-+|....
T Consensus 171 i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~ 209 (228)
T COG0705 171 ILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209 (228)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888762 2 499999999999998654
No 7
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.05 E-value=1.6e-09 Score=95.51 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=71.3
Q ss_pred ccChHHHHHHHHHHHHHHHHhc-C---ccccc-----ce-eeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHH
Q 026288 10 SLPPICKAYGTLCVAVATVCSL-G---LLDLS-----IL-ALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARY 79 (240)
Q Consensus 10 ~iPpvTR~~~~~~~~~~ll~~~-~---~~~p~-----~l-~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~ 79 (240)
++|.+|..++++.+++.++... + ...|. ++ ..+++.+ +++|+||++|+.|.|++ .+|+++|++++|..
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~ 128 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM 128 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 6789999999999988877543 2 12232 12 2345555 56899999999999987 99999999999999
Q ss_pred hHHhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 026288 80 GVNLEKGPFERRTADFLWMMIFGALSLLVLSA 111 (240)
Q Consensus 80 ~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~ 111 (240)
|+.+|+... +..|+...+++++.-.+++.
T Consensus 129 G~~lE~~~G---~~r~~ilYl~sGi~G~l~s~ 157 (278)
T PTZ00101 129 GFTLEKNYG---IVKIIILYFLTGIYGNILSS 157 (278)
T ss_pred HHHHHHHHC---hHHHHHHHHHHHHHHHHHHH
Confidence 999999873 45677444555555455454
No 8
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=98.94 E-value=1.2e-09 Score=86.54 Aligned_cols=133 Identities=25% Similarity=0.324 Sum_probs=80.1
Q ss_pred hhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhc-c-cchH-HHH
Q 026288 48 SKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFR-S-YFLG-ISL 124 (240)
Q Consensus 48 ~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~-~-~~l~-~~l 124 (240)
+++|+||++|+.|.|.+ ..|+++|++.++.++..+|+.. ++.++....+.++++..+.+.. ..+ . +..| ++.
T Consensus 2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~G~Sg~ 76 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLL-FSPPNQPYVGASGA 76 (145)
T ss_dssp GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HH-S-----SSHHH
T ss_pred CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhcccc-ccccccccCCCccc
Confidence 57899999999999986 9999999999999999999986 3446665555555544444432 112 2 2343 445
Q ss_pred HHHHHHHHhhcCCCceeEE---EEeecccccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 026288 125 VFMLVYVWSREFPNSQINI---YGLVTLKAFYLPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLT 186 (240)
Q Consensus 125 ~~~l~y~ws~~~p~~~v~l---~g~i~i~a~ylP~~~l~~~~l~~~~~~~~l~Gi~~Ghly~~l~ 186 (240)
++++.-......|+.+... ...+.+...++++.+.... ....+...|+.|+++|.+|.+..
T Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~ 140 (145)
T PF01694_consen 77 VFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI 140 (145)
T ss_dssp HHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444332221 2233444444554433222 22245699999999999998764
No 9
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.1e-08 Score=83.44 Aligned_cols=191 Identities=20% Similarity=0.331 Sum_probs=117.4
Q ss_pred HHHhccChHHHHHHHHHHHHHHHHhcCcccccceeeehHhhhhh-ccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhc
Q 026288 6 EYYHSLPPICKAYGTLCVAVATVCSLGLLDLSILALEYKLVFSK-FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLE 84 (240)
Q Consensus 6 ~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~-~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE 84 (240)
.-+.++| |||..++.+...++...+.-.++ .+.++++..+.+ +|+||++-+-|.+.+ .-++.+.++.+| +-+.+|
T Consensus 6 ~g~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~E 81 (323)
T KOG4463|consen 6 SGFHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFE 81 (323)
T ss_pred Ccccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHH
Confidence 4456775 99999999999988887654555 567777777765 899999999999875 888999999888 779999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHH----Hh---hhhcccchH-HHHHHHHHHHHhhcCCC-ceeEEEEeecccccc--
Q 026288 85 KGPFERRTADFLWMMIFGALSLLVLS----AI---PIFRSYFLG-ISLVFMLVYVWSREFPN-SQINIYGLVTLKAFY-- 153 (240)
Q Consensus 85 ~~~f~~~~~dyl~~ll~~~~~i~~~s----~~---~~~~~~~l~-~~l~~~l~y~ws~~~p~-~~v~l~g~i~i~a~y-- 153 (240)
+... +.+|+.++++.++...+.. .+ ...+.-..+ .+++++..|-+--.-|- .-+..|+ +++..|.
T Consensus 82 RlLG---Shky~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~-~~f~dkni~ 157 (323)
T KOG4463|consen 82 RLLG---SHKYSVFIVFSGTVSLLLEVILLSLLKDTTANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFG-VNFSDKNIS 157 (323)
T ss_pred HHhc---cccceeehhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCceeeeeccceEEEecceeEEEeec-cccccccee
Confidence 9863 4456666665544333222 11 001111121 13555555544444443 3345565 3666653
Q ss_pred -hHHHHHHHHHHhC----C-------CchhHHHHHHHHHHHHHHHhhccCCCCCCCcCChHHHHHhhhh
Q 026288 154 -LPWAMLALDVIFG----S-------PLVPDLLGIIAGHLYYFLTVLHPLATGKNLLKTPKWVQKLVAR 210 (240)
Q Consensus 154 -lP~~~l~~~~l~~----~-------~~~~~l~Gi~~Ghly~~l~~i~P~~~g~~~l~tP~~~~~l~~~ 210 (240)
+|..=++++.-.. . ++.-.+.|++.||+|..- ..|...-++|.++-..+++
T Consensus 158 ~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~------~agi~~~~~~~~~~~f~d~ 220 (323)
T KOG4463|consen 158 FIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLN------IAGIRKAKFPEFVASFFDR 220 (323)
T ss_pred eecccchhhhcCcccccccccceeecccccccchhhhhhHhhcc------cccccccccHHHHHhhhcc
Confidence 3322222222211 1 235667899999999753 2344555666666666655
No 10
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=97.94 E-value=7.3e-05 Score=65.95 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=113.9
Q ss_pred HhccChHHHHHHHHHHHHHHHHhcC-----cccccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHH
Q 026288 8 YHSLPPICKAYGTLCVAVATVCSLG-----LLDLSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVN 82 (240)
Q Consensus 8 ~~~iPpvTR~~~~~~~~~~ll~~~~-----~~~p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~ 82 (240)
..+.-++-+.++.+++...+.+..+ ...| .+.+-|.+++ +++|+++|+.|+- ..-++.+.+...+.-.|+.
T Consensus 21 l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fie-~~vw~V~~sv~~L~v~G~~ 96 (326)
T KOG2890|consen 21 LLNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFIE-LNVWDVLVSVLTLSVGGKF 96 (326)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchhh-hhHHHHHHHHHheeeccee
Confidence 3344455666665655555554321 1222 2344455555 5999999999875 4589999999999999999
Q ss_pred hccCCCCCCchhHHHHHHH-HHHHHH---HHHHhhh--h-c-----ccchH-HHHHHHHHHHHhhcCCCceeEEEEeecc
Q 026288 83 LEKGPFERRTADFLWMMIF-GALSLL---VLSAIPI--F-R-----SYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTL 149 (240)
Q Consensus 83 LE~~~f~~~~~dyl~~ll~-~~~~i~---~~s~~~~--~-~-----~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i 149 (240)
+|..+. +.+++.+..+ .++..+ +.+.+.+ . + .+.-| .+....+..+|-+..|+..+.---.-++
T Consensus 97 lEp~Wg---~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~ 173 (326)
T KOG2890|consen 97 LEPNWG---SLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRF 173 (326)
T ss_pred eccCCC---CHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhh
Confidence 999983 3455544333 322222 1121111 1 1 23333 4788889999999999998864422344
Q ss_pred cccchHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHHHhhcc
Q 026288 150 KAFYLPWAMLALDVIFG-------SPLVPDLLGIIAGHLYYFLTVLHP 190 (240)
Q Consensus 150 ~a~ylP~~~l~~~~l~~-------~~~~~~l~Gi~~Ghly~~l~~i~P 190 (240)
.++-+|...++++++.. .++..-..|..++..|.++..-.|
T Consensus 174 ~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 174 LYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence 44559998887766543 345777799999999998876666
No 11
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=97.57 E-value=5.8e-05 Score=67.62 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=81.0
Q ss_pred hHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-
Q 026288 43 YKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG- 121 (240)
Q Consensus 43 ~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~- 121 (240)
+.+..++.|+||++|+.+.|.+ .+|+.+|+......|-.||+.+..-| =.+.|++ +++.=.+++.+.--+.+..|
T Consensus 110 i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~~R--iglIYl~-gg~aGSlls~l~d~~~~sVGA 185 (316)
T KOG2289|consen 110 IYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGFLR--IGLIYLA-GGVAGSLLSSLFDPNSISVGA 185 (316)
T ss_pred ecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCceE--Eeeehhh-hhhhhHHHHHHhccCCceecc
Confidence 3455678999999999999987 99999999999999999999873212 2233333 32222233332111111222
Q ss_pred --------HHHHHHHHHHHhhcCCCceeEEEEeecccccchHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHhhc
Q 026288 122 --------ISLVFMLVYVWSREFPNSQINIYGLVTLKAFYLPWAMLALDVIFGS----PLVPDLLGIIAGHLYYFLTVLH 189 (240)
Q Consensus 122 --------~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~l~~~----~~~~~l~Gi~~Ghly~~l~~i~ 189 (240)
.+.+..++--|........ +.-.-.+++++++-++. +.+.|+.|...|-.+-|+..+-
T Consensus 186 SggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~ 255 (316)
T KOG2289|consen 186 SGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIG 255 (316)
T ss_pred cHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhc
Confidence 2333344444554433211 11122233344555553 3367888888888888887777
Q ss_pred cCCC
Q 026288 190 PLAT 193 (240)
Q Consensus 190 P~~~ 193 (240)
|..+
T Consensus 256 g~~~ 259 (316)
T KOG2289|consen 256 GQLG 259 (316)
T ss_pred ccee
Confidence 7643
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=96.88 E-value=0.0014 Score=49.14 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=46.3
Q ss_pred cchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 026288 51 QVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGPFERRTADFLWMMIFGALSLLVLS 110 (240)
Q Consensus 51 q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~f~~~~~dyl~~ll~~~~~i~~~s 110 (240)
.+|+++|+.|+..+ .+.++++...+...++.+|+.+. +.+++.|+++..+...++.
T Consensus 7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~WG---s~E~lkFi~vv~~~tnl~~ 62 (99)
T PF08551_consen 7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIWG---SREFLKFILVVNVITNLLT 62 (99)
T ss_pred ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhcC---hHHHHHHHHHHHHHhHHHH
Confidence 79999999999764 89999999999999999999983 5588888877665544443
No 13
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=88.30 E-value=0.44 Score=44.87 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=33.7
Q ss_pred ccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288 50 FQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP 87 (240)
Q Consensus 50 ~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~ 87 (240)
-|++||+||.|.|.+ -+|.+..+.+=+...+.||+-.
T Consensus 449 dQfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~ 485 (652)
T KOG2290|consen 449 DQFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLA 485 (652)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhh
Confidence 499999999999987 8999999999898999999975
No 14
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=61.86 E-value=4.1 Score=30.17 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=10.9
Q ss_pred CCcccccccCCC
Q 026288 229 VAFRGRSYRLSD 240 (240)
Q Consensus 229 ~~~~g~g~rlg~ 240 (240)
..|.|+|||||+
T Consensus 74 ~~F~G~G~~LGs 85 (93)
T smart00553 74 KPFSGSGQKLGS 85 (93)
T ss_pred cCCccCCccCCC
Confidence 489999999996
No 15
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.46 E-value=28 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.794 Sum_probs=13.8
Q ss_pred cccccchHHHHHHHHH
Q 026288 148 TLKAFYLPWAMLALDV 163 (240)
Q Consensus 148 ~i~a~ylP~~~l~~~~ 163 (240)
.-...+|||++|++|+
T Consensus 79 ~~~~~~LPW~LL~lSW 94 (103)
T PF11169_consen 79 QSRSSWLPWGLLVLSW 94 (103)
T ss_pred cccccchhHHHHHHHH
Confidence 4566799999999999
No 16
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=31.01 E-value=1.3e+02 Score=27.08 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=79.4
Q ss_pred HHHHhccChHHHHHHHHHHHHHHHHhcCcccc---cceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhH
Q 026288 5 AEYYHSLPPICKAYGTLCVAVATVCSLGLLDL---SILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGV 81 (240)
Q Consensus 5 ~~~~~~iPpvTR~~~~~~~~~~ll~~~~~~~p---~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~ 81 (240)
..|.+-.|-+.-.++++.+.+..+-......- .++.. ...++.-.|.++++.|=|-. .+|.-.+++.+..|..
T Consensus 108 k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls---~~~~~t~~w~i~~s~Fsh~~-a~h~g~~~~~~~~y~~ 183 (310)
T KOG2980|consen 108 KHWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLS---RNAYKTGCWKIILSTFSHYS-ALHLGPNMLVLKSYLA 183 (310)
T ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhh---cccccccceeEEeehhcchh-HhhhcHHHHHHHHHhc
Confidence 35666666533333444444555444322211 11111 11234678999999976654 7888888888888887
Q ss_pred -HhccCCCCCCchhHHHHHHHHHHHHHHHHHhh---h-hcccchH-HHHHHHHHHHHhhcCCCceeEEEEeeccccc-ch
Q 026288 82 -NLEKGPFERRTADFLWMMIFGALSLLVLSAIP---I-FRSYFLG-ISLVFMLVYVWSREFPNSQINIYGLVTLKAF-YL 154 (240)
Q Consensus 82 -~LE~~~f~~~~~dyl~~ll~~~~~i~~~s~~~---~-~~~~~l~-~~l~~~l~y~ws~~~p~~~v~l~g~i~i~a~-yl 154 (240)
++-...+. .--+..|+ .....-..+.... . ...+-|| ++-++++.-+.|-.+|+.+..+..++++|+- .+
T Consensus 184 ~a~~~~~~~--~~~~Alyl-Sa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~ 260 (310)
T KOG2980|consen 184 GALKGSLGF--SSFFALYL-SAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGL 260 (310)
T ss_pred ccccCCcch--hhccccee-ccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchh
Confidence 77665432 11223332 1111101111000 0 1134455 4567788888899999999988888999984 34
Q ss_pred HH
Q 026288 155 PW 156 (240)
Q Consensus 155 P~ 156 (240)
|+
T Consensus 261 ~~ 262 (310)
T KOG2980|consen 261 AF 262 (310)
T ss_pred HH
Confidence 43
Done!