Query 026288
Match_columns 240
No_of_seqs 151 out of 655
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.6 1.5E-15 5.2E-20 124.8 11.2 167 10-186 2-178 (181)
2 2nr9_A Protein GLPG homolog; i 99.5 3.1E-13 1.1E-17 112.3 10.9 167 9-186 6-183 (196)
3 1ss6_A P47, NSFL1 cofactor P47 46.0 5 0.00017 29.1 0.4 12 229-240 83-94 (102)
4 2jpk_A Bacteriocin lactococcin 13.1 1E+02 0.0034 17.3 1.6 17 150-166 2-18 (35)
5 1jb0_J Photosystem 1 reaction 7.8 1.8E+02 0.0062 17.3 1.5 24 1-24 1-24 (41)
6 1w8x_P Protein P16, protein S, 7.2 2.7E+02 0.0094 19.2 2.4 22 120-141 10-31 (117)
7 1emz_A Envelope glycoprotein E 6.9 3E+02 0.01 14.6 1.9 13 174-186 4-16 (26)
8 3nsw_A Excretory-secretory pro 4.1 1.4E+02 0.005 20.3 -0.6 10 48-57 38-47 (106)
9 1sou_A 5,10-methenyltetrahydro 4.0 3.5E+02 0.012 21.0 1.5 12 228-239 119-130 (194)
10 2vty_A Protein F1, F1L; BCL-2, 3.7 3.1E+02 0.011 20.5 0.8 20 3-22 70-89 (182)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.63 E-value=1.5e-15 Score=124.78 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=113.0
Q ss_pred ccChHHHHHHHHHHHHHHHHhcCccc--ccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccCC
Q 026288 10 SLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKGP 87 (240)
Q Consensus 10 ~iPpvTR~~~~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~~ 87 (240)
+.||+|+.++++++++.++....-.. ..++.++++. .++.|+||++|+.|.|++ ..|+++||+.++.+++.+|+..
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999987653211 1245566654 456899999999999987 7999999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHH---HHHhhcCCCceeEEEEeecccccchHHHHHHHHH
Q 026288 88 FERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV---YVWSREFPNSQINIYGLVTLKAFYLPWAMLALDV 163 (240)
Q Consensus 88 f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~---y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~~ 163 (240)
++.+|+.+.+.+++...+.+.. +.+.+..| ++.+++++ .+.++++|+.++. ++.+...+-.+.+++++
T Consensus 80 ---G~~~fl~~yl~~~i~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~ 151 (181)
T 2xov_A 80 ---GSGKLIVITLISALLSGYVQQK-FSGPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGW 151 (181)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH-hcCCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHH
Confidence 3567887777666665555543 22233444 33333322 2346788887653 23333333223334454
Q ss_pred Hh----CCCchhHHHHHHHHHHHHHHH
Q 026288 164 IF----GSPLVPDLLGIIAGHLYYFLT 186 (240)
Q Consensus 164 l~----~~~~~~~l~Gi~~Ghly~~l~ 186 (240)
.. +-+...|+.|+++|.++..+.
T Consensus 152 ~~~~~~~v~~~aHlgG~l~G~l~~~~~ 178 (181)
T 2xov_A 152 FDLFGMSMANGAHIAGLAVGLAMAFVD 178 (181)
T ss_dssp TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHH
Confidence 43 234699999999999987653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.46 E-value=3.1e-13 Score=112.31 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=112.5
Q ss_pred hccChHHHHHHHHHHHHHHHHhcCccc--ccceeeehHhhhhhccchhhhhhhhccCcccHHHHHHHHHHHHHhHHhccC
Q 026288 9 HSLPPICKAYGTLCVAVATVCSLGLLD--LSILALEYKLVFSKFQVWRLITNFFFLGTFSINFGIRLLMIARYGVNLEKG 86 (240)
Q Consensus 9 ~~iPpvTR~~~~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~q~WRLiT~~f~~g~~~~~~lf~l~~l~~~~~~LE~~ 86 (240)
.+.||+|+.++++++++.++....-.. ..++.++++.+ .+.|+||++|+.|.|++ ..|+++||+.++..++.+|+.
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~ 83 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT 83 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999987653111 12455677665 56899999999999987 899999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhhhcccchH-HHHHHHHH---HHHhhcCCCceeEEEEeecccccchHHHHHHHH
Q 026288 87 PFERRTADFLWMMIFGALSLLVLSAIPIFRSYFLG-ISLVFMLV---YVWSREFPNSQINIYGLVTLKAFYLPWAMLALD 162 (240)
Q Consensus 87 ~f~~~~~dyl~~ll~~~~~i~~~s~~~~~~~~~l~-~~l~~~l~---y~ws~~~p~~~v~l~g~i~i~a~ylP~~~l~~~ 162 (240)
. ++.+|+.+.+.+++...+.+.. +.+....| ++.+++++ .+..+.+|+. + .++.+...+-.+.++++
T Consensus 84 ~---G~~~~l~~yl~~~~~~~l~~~~-~~~~~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~ 154 (196)
T 2nr9_A 84 F---GSVKLLMLYVVASAITGYVQNY-VSGPAFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFTMLLVGIALG 154 (196)
T ss_dssp H---CHHHHHHHHHHHHHHHHHHHHH-HHCSCCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTTTTTTTTTHH
T ss_pred H---ChHHHHHHHHHHHHHHHHHHHH-hcCCCeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHHHHHHHHHHH
Confidence 6 3557876666666655554443 22223333 33333322 1234566665 2 13445444433344455
Q ss_pred HHhC-----CCchhHHHHHHHHHHHHHHH
Q 026288 163 VIFG-----SPLVPDLLGIIAGHLYYFLT 186 (240)
Q Consensus 163 ~l~~-----~~~~~~l~Gi~~Ghly~~l~ 186 (240)
++.. -+...|+.|+++|.++-.+.
T Consensus 155 ~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 155 FISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp HHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 5542 25599999999999987754
No 3
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=46.05 E-value=5 Score=29.13 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.7
Q ss_pred CCcccccccCCC
Q 026288 229 VAFRGRSYRLSD 240 (240)
Q Consensus 229 ~~~~g~g~rlg~ 240 (240)
..|.|.|||||+
T Consensus 83 ~~F~G~G~~LGs 94 (102)
T 1ss6_A 83 KAFTGEGQKLGS 94 (102)
T ss_dssp TTSCSSSSSGGG
T ss_pred cCCcccCeECCC
Confidence 489999999996
No 4
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=13.08 E-value=1e+02 Score=17.33 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.2
Q ss_pred cccchHHHHHHHHHHhC
Q 026288 150 KAFYLPWAMLALDVIFG 166 (240)
Q Consensus 150 ~a~ylP~~~l~~~~l~~ 166 (240)
|.+||||+.-+.+++.+
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 46789999888887754
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=7.81 E-value=1.8e+02 Score=17.26 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=16.9
Q ss_pred CCChHHHHhccChHHHHHHHHHHH
Q 026288 1 MSSPAEYYHSLPPICKAYGTLCVA 24 (240)
Q Consensus 1 m~~~~~~~~~iPpvTR~~~~~~~~ 24 (240)
|+.+..+++..|.+.-.|+..+..
T Consensus 1 m~~f~kyLstAPVla~~w~~~tAg 24 (41)
T 1jb0_J 1 MKHFLTYLSTAPVLAAIWMTITAG 24 (41)
T ss_dssp CHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CchHHHHHhhhhHHHHHHHHHHHH
Confidence 556778888888777666665543
No 6
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=7.18 E-value=2.7e+02 Score=19.23 Aligned_cols=22 Identities=36% Similarity=0.866 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcee
Q 026288 120 LGISLVFMLVYVWSREFPNSQI 141 (240)
Q Consensus 120 l~~~l~~~l~y~ws~~~p~~~v 141 (240)
.|.+++..+++.|-|..|..+|
T Consensus 10 vggglvliliwlwfrnrpaaqv 31 (117)
T 1w8x_P 10 VGGGLVLILIWLWFRNRPAAQV 31 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCS
T ss_pred ecCchhhHHHHHHHccChHHHH
Confidence 5667788888899888887766
No 7
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.92 E-value=3e+02 Score=14.62 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 026288 174 LGIIAGHLYYFLT 186 (240)
Q Consensus 174 ~Gi~~Ghly~~l~ 186 (240)
-|++.|+.|+...
T Consensus 4 wGvl~glayfsm~ 16 (26)
T 1emz_A 4 WGVLAGIAYFSMV 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHh
Confidence 4788899998765
No 8
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=4.09 E-value=1.4e+02 Score=20.33 Aligned_cols=10 Identities=40% Similarity=0.823 Sum_probs=7.0
Q ss_pred hhccchhhhh
Q 026288 48 SKFQVWRLIT 57 (240)
Q Consensus 48 ~~~q~WRLiT 57 (240)
.+.|+||+.-
T Consensus 38 ynlqywrlyd 47 (106)
T 3nsw_A 38 YNLQYWRLYD 47 (106)
T ss_dssp EEEEEEEECC
T ss_pred ccceeEEEec
Confidence 3578898863
No 9
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=3.95 E-value=3.5e+02 Score=21.04 Aligned_cols=12 Identities=58% Similarity=0.899 Sum_probs=9.6
Q ss_pred CCCcccccccCC
Q 026288 228 GVAFRGRSYRLS 239 (240)
Q Consensus 228 ~~~~~g~g~rlg 239 (240)
+-+|=-+|+|||
T Consensus 119 ~vafD~~G~RLG 130 (194)
T 1sou_A 119 GVAFDLEGYRLG 130 (194)
T ss_dssp CSCBCSSSCBCC
T ss_pred CeEECCCCceec
Confidence 557778899998
No 10
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=3.69 E-value=3.1e+02 Score=20.46 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.5
Q ss_pred ChHHHHhccChHHHHHHHHH
Q 026288 3 SPAEYYHSLPPICKAYGTLC 22 (240)
Q Consensus 3 ~~~~~~~~iPpvTR~~~~~~ 22 (240)
++.+.+++.|.-||.++-+.
T Consensus 70 rlddlyrqlptktrsyidii 89 (182)
T 2vty_A 70 RLDDLYRQLPTKTRSYIDII 89 (182)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHHHhCCccchhhhhhh
Confidence 46789999999999887553
Done!