Query 026289
Match_columns 240
No_of_seqs 181 out of 1201
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:02:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 2.5E-58 5.4E-63 390.5 24.6 235 1-235 1-236 (236)
2 PRK06973 nicotinic acid mononu 100.0 3.3E-52 7E-57 353.0 20.2 202 18-236 19-243 (243)
3 cd09286 NMNAT_Eukarya Nicotina 100.0 2.5E-51 5.4E-56 345.0 21.9 211 22-234 1-225 (225)
4 COG1057 NadD Nicotinic acid mo 100.0 1E-50 2.2E-55 332.9 18.4 193 20-236 2-197 (197)
5 TIGR00482 nicotinate (nicotina 100.0 1.6E-50 3.4E-55 333.6 18.5 190 25-234 1-193 (193)
6 PRK00071 nadD nicotinic acid m 100.0 3.3E-50 7.3E-55 334.1 19.6 198 19-235 2-202 (203)
7 cd02165 NMNAT Nicotinamide/nic 100.0 4.1E-47 8.9E-52 313.0 18.2 191 23-234 1-192 (192)
8 PRK07152 nadD putative nicotin 100.0 7.9E-46 1.7E-50 330.2 18.5 184 21-236 1-186 (342)
9 PRK08887 nicotinic acid mononu 100.0 6.2E-46 1.4E-50 301.0 15.8 167 21-237 2-173 (174)
10 KOG3199 Nicotinamide mononucle 100.0 8E-41 1.7E-45 268.6 20.3 222 16-237 3-233 (234)
11 TIGR01510 coaD_prev_kdtB pante 100.0 2.9E-34 6.4E-39 228.8 11.5 154 23-231 1-154 (155)
12 cd02163 PPAT Phosphopantethein 100.0 8.3E-34 1.8E-38 225.7 9.4 153 23-230 1-153 (153)
13 PRK00168 coaD phosphopantethei 100.0 3.1E-32 6.7E-37 217.9 12.9 156 21-231 1-156 (159)
14 PF01467 CTP_transf_2: Cytidyl 100.0 1.5E-29 3.2E-34 199.8 9.2 155 25-209 1-157 (157)
15 TIGR01527 arch_NMN_Atrans nico 99.9 7.5E-23 1.6E-27 164.0 13.6 153 24-232 2-155 (165)
16 cd02166 NMNAT_Archaea Nicotina 99.9 7.3E-23 1.6E-27 164.3 11.8 151 24-234 2-159 (163)
17 COG0669 CoaD Phosphopantethein 99.9 1.5E-22 3.2E-27 157.2 12.6 156 21-231 2-157 (159)
18 cd02168 NMNAT_Nudix Nicotinami 99.9 4.8E-22 1E-26 161.9 12.8 157 24-232 2-166 (181)
19 PRK01153 nicotinamide-nucleoti 99.9 7.1E-21 1.5E-25 154.1 15.6 154 23-232 2-158 (174)
20 PRK13964 coaD phosphopantethei 99.8 5.9E-20 1.3E-24 143.1 11.5 138 22-213 2-139 (140)
21 PRK05379 bifunctional nicotina 99.8 6.4E-20 1.4E-24 163.4 12.9 162 20-232 5-172 (340)
22 cd02039 cytidylyltransferase_l 99.8 8.6E-20 1.9E-24 142.3 10.4 140 23-209 1-143 (143)
23 cd02167 NMNAT_NadR Nicotinamid 99.8 2.3E-18 4.9E-23 137.6 10.7 71 23-100 1-73 (158)
24 PRK13793 nicotinamide-nucleoti 99.8 2.5E-17 5.5E-22 134.6 13.8 64 20-88 3-66 (196)
25 cd02169 Citrate_lyase_ligase C 99.7 3.6E-17 7.7E-22 142.8 10.0 170 21-228 114-297 (297)
26 TIGR00339 sopT ATP sulphurylas 99.7 2.9E-15 6.4E-20 134.7 15.2 177 20-229 184-382 (383)
27 TIGR00124 cit_ly_ligase [citra 99.7 2.6E-16 5.7E-21 139.3 8.0 174 21-232 139-330 (332)
28 smart00764 Citrate_ly_lig Citr 99.6 2.2E-15 4.8E-20 122.8 12.6 58 28-95 6-63 (182)
29 cd02170 cytidylyltransferase c 99.6 4E-14 8.6E-19 110.3 11.9 133 21-212 1-135 (136)
30 TIGR01526 nadR_NMN_Atrans nico 99.6 1E-14 2.2E-19 129.3 8.3 70 22-98 2-74 (325)
31 PRK08099 bifunctional DNA-bind 99.5 1E-13 2.2E-18 126.0 13.0 81 17-99 48-132 (399)
32 PRK00777 phosphopantetheine ad 99.5 1.4E-13 3E-18 109.3 11.2 61 23-88 3-65 (153)
33 COG1056 NadR Nicotinamide mono 99.4 1.3E-12 2.8E-17 104.5 11.6 64 20-89 2-66 (172)
34 TIGR00125 cyt_tran_rel cytidyl 99.4 2.6E-13 5.7E-18 92.3 5.7 61 23-89 1-64 (66)
35 cd02171 G3P_Cytidylyltransfera 99.3 1.4E-11 3.1E-16 94.9 11.1 62 21-85 1-62 (129)
36 cd02064 FAD_synthetase_N FAD s 99.3 3E-11 6.5E-16 98.5 12.2 72 24-97 2-78 (180)
37 PF08218 Citrate_ly_lig: Citra 99.2 2E-11 4.3E-16 97.4 5.9 162 29-228 7-182 (182)
38 cd02164 PPAT_CoAS phosphopante 99.2 7.5E-11 1.6E-15 92.6 8.5 61 24-89 2-66 (143)
39 cd02174 CCT CTP:phosphocholine 99.2 6.4E-10 1.4E-14 88.0 13.2 96 22-141 3-100 (150)
40 cd02156 nt_trans nucleotidyl t 99.1 3.3E-10 7.1E-15 84.3 6.4 55 24-85 2-58 (105)
41 cd02173 ECT CTP:phosphoethanol 99.0 1.1E-09 2.4E-14 86.8 8.6 95 21-141 2-100 (152)
42 TIGR01518 g3p_cytidyltrns glyc 98.9 4.6E-09 1E-13 80.6 8.2 55 25-84 2-58 (125)
43 PLN02388 phosphopantetheine ad 98.8 5.4E-08 1.2E-12 78.7 12.0 71 14-88 12-85 (177)
44 COG3053 CitC Citrate lyase syn 98.8 3.3E-08 7.1E-13 84.6 10.8 178 20-231 144-336 (352)
45 PRK13671 hypothetical protein; 98.8 6.3E-09 1.4E-13 90.7 5.6 58 22-85 2-61 (298)
46 PRK05627 bifunctional riboflav 98.8 1.5E-07 3.3E-12 82.8 13.4 72 23-96 15-91 (305)
47 TIGR02199 rfaE_dom_II rfaE bif 98.8 1E-07 2.3E-12 74.9 11.2 60 21-85 11-74 (144)
48 PLN02406 ethanolamine-phosphat 98.7 8.7E-08 1.9E-12 86.9 11.2 103 16-140 48-152 (418)
49 PTZ00308 ethanolamine-phosphat 98.7 5.4E-08 1.2E-12 87.1 9.6 95 20-140 191-289 (353)
50 TIGR00083 ribF riboflavin kina 98.7 9.9E-08 2.1E-12 83.2 10.9 69 25-97 2-76 (288)
51 PF01747 ATP-sulfurylase: ATP- 98.6 2.7E-06 5.9E-11 71.1 15.0 185 10-230 11-213 (215)
52 cd02172 RfaE_N N-terminal doma 98.6 2.4E-06 5.1E-11 67.2 13.7 59 21-84 4-64 (144)
53 PRK07143 hypothetical protein; 98.6 1.2E-06 2.7E-11 76.0 12.6 69 23-97 17-87 (279)
54 COG2046 MET3 ATP sulfurylase ( 98.5 6E-06 1.3E-10 73.1 14.8 173 25-231 187-376 (397)
55 PRK01170 phosphopantetheine ad 98.5 5.9E-07 1.3E-11 79.2 8.1 61 23-88 2-63 (322)
56 PTZ00308 ethanolamine-phosphat 98.3 9.2E-06 2E-10 72.9 12.0 60 20-84 10-71 (353)
57 cd00517 ATPS ATP-sulfurylase. 98.3 3.1E-05 6.6E-10 69.4 15.3 179 20-230 157-352 (353)
58 PRK04149 sat sulfate adenylylt 98.2 0.00011 2.3E-09 66.8 16.3 178 17-231 184-380 (391)
59 COG0196 RibF FAD synthase [Coe 98.2 2.7E-05 5.9E-10 68.2 12.0 74 23-98 17-95 (304)
60 COG0615 TagD Cytidylyltransfer 98.1 7.8E-06 1.7E-10 63.3 6.4 56 24-84 4-62 (140)
61 PLN02413 choline-phosphate cyt 98.0 0.00016 3.4E-09 62.4 12.4 71 18-92 24-96 (294)
62 PRK13670 hypothetical protein; 97.9 0.00012 2.6E-09 66.6 11.6 58 22-84 3-61 (388)
63 PRK05537 bifunctional sulfate 97.9 0.00055 1.2E-08 65.3 16.4 180 18-230 185-383 (568)
64 PF06574 FAD_syn: FAD syntheta 97.9 6.6E-05 1.4E-09 59.9 7.6 63 23-85 7-74 (157)
65 PRK11316 bifunctional heptose 97.8 0.00024 5.1E-09 66.2 12.3 68 20-92 339-409 (473)
66 COG1019 Predicted nucleotidylt 97.5 0.00017 3.6E-09 56.4 5.2 61 20-87 4-68 (158)
67 COG1323 Predicted nucleotidylt 97.5 0.00038 8.2E-09 62.3 7.1 55 27-84 7-61 (358)
68 PLN02406 ethanolamine-phosphat 97.2 0.0017 3.7E-08 59.3 8.6 72 17-94 247-322 (418)
69 PF05636 HIGH_NTase1: HIGH Nuc 97.0 0.0011 2.3E-08 60.4 5.2 56 23-82 4-59 (388)
70 KOG3351 Predicted nucleotidylt 96.1 0.0052 1.1E-07 51.9 3.2 78 17-99 138-220 (293)
71 KOG2803 Choline phosphate cyti 94.5 0.071 1.5E-06 46.7 5.0 61 20-84 7-68 (358)
72 cd00560 PanC Pantoate-beta-ala 92.3 0.37 8E-06 42.0 6.0 54 26-85 29-85 (277)
73 PLN02660 pantoate--beta-alanin 91.8 0.49 1.1E-05 41.3 6.2 50 33-85 32-84 (284)
74 TIGR00018 panC pantoate--beta- 91.3 0.52 1.1E-05 41.1 5.8 58 22-85 23-85 (282)
75 KOG2803 Choline phosphate cyti 91.1 0.43 9.2E-06 41.9 5.0 35 20-57 197-231 (358)
76 PRK00380 panC pantoate--beta-a 91.0 0.51 1.1E-05 41.2 5.5 56 24-85 27-85 (281)
77 KOG4238 Bifunctional ATP sulfu 90.4 1.6 3.5E-05 39.4 8.1 57 29-88 423-481 (627)
78 KOG2804 Phosphorylcholine tran 88.5 1.1 2.5E-05 39.1 5.6 61 18-84 61-125 (348)
79 COG2870 RfaE ADP-heptose synth 88.0 1.1 2.5E-05 40.8 5.4 63 22-92 333-401 (467)
80 PF02569 Pantoate_ligase: Pant 80.6 3.5 7.5E-05 36.0 5.1 61 21-85 22-85 (280)
81 PF00837 T4_deiodinase: Iodoth 78.8 21 0.00045 30.4 9.0 81 17-98 100-191 (237)
82 PRK13477 bifunctional pantoate 78.6 4.9 0.00011 38.1 5.8 60 22-85 21-83 (512)
83 COG0414 PanC Panthothenate syn 73.6 8.4 0.00018 33.4 5.4 62 20-85 21-85 (285)
84 PRK15364 pathogenicity island 71.2 4.7 0.0001 32.6 3.1 22 213-234 92-113 (196)
85 PF13793 Pribosyltran_N: N-ter 60.5 66 0.0014 24.0 7.5 81 4-84 31-114 (116)
86 PRK13671 hypothetical protein; 59.4 7.9 0.00017 34.1 2.6 31 199-229 194-224 (298)
87 COG1908 FrhD Coenzyme F420-red 55.9 89 0.0019 23.8 7.9 57 22-88 33-89 (132)
88 COG1957 URH1 Inosine-uridine n 55.3 6.2 0.00013 35.0 1.2 29 5-33 125-157 (311)
89 PF02201 SWIB: SWIB/MDM2 domai 52.4 5.2 0.00011 27.6 0.3 18 221-238 26-43 (76)
90 PF00578 AhpC-TSA: AhpC/TSA fa 43.5 96 0.0021 22.3 6.0 41 17-57 24-64 (124)
91 cd03145 GAT1_cyanophycinase Ty 42.1 1.9E+02 0.0042 23.8 8.2 27 129-158 84-110 (217)
92 smart00151 SWIB SWI complex, B 41.5 20 0.00042 24.7 1.8 17 220-236 25-41 (77)
93 TIGR02069 cyanophycinase cyano 38.3 2.3E+02 0.005 24.1 8.3 18 129-146 83-100 (250)
94 PF03433 EspA: EspA-like secre 38.1 11 0.00023 30.9 0.0 18 217-234 96-113 (188)
95 PRK10768 ribonucleoside hydrol 37.3 15 0.00033 32.2 0.9 27 6-32 125-155 (304)
96 PF05636 HIGH_NTase1: HIGH Nuc 36.9 11 0.00025 34.4 0.0 30 199-228 200-231 (388)
97 KOG0564 5,10-methylenetetrahyd 34.4 50 0.0011 31.2 3.7 35 85-119 111-145 (590)
98 PRK09955 rihB ribonucleoside h 33.9 20 0.00044 31.7 1.1 27 6-32 126-156 (313)
99 KOG3042 Panthothenate syntheta 33.6 49 0.0011 27.9 3.2 62 20-85 23-87 (283)
100 PRK00553 ribose-phosphate pyro 33.2 2.2E+02 0.0048 25.4 7.6 82 4-85 40-125 (332)
101 cd02654 nuc_hydro_CjNH nuc_hyd 32.5 22 0.00047 31.5 1.0 25 6-30 138-166 (318)
102 PF13915 DUF4210: Domain of un 32.0 22 0.00047 24.0 0.7 14 22-35 28-41 (66)
103 PRK10443 rihA ribonucleoside h 31.6 22 0.00047 31.4 0.9 27 6-32 126-156 (311)
104 KOG1946 RNA polymerase I trans 31.2 29 0.00063 29.6 1.5 40 198-238 103-142 (240)
105 PTZ00313 inosine-adenosine-gua 30.9 24 0.00052 31.4 1.1 27 5-31 138-169 (326)
106 TIGR01251 ribP_PPkin ribose-ph 29.8 2.9E+02 0.0064 24.2 7.8 82 4-85 31-117 (308)
107 cd02651 nuc_hydro_IU_UC_XIUA n 28.4 29 0.00063 30.3 1.2 25 6-30 123-151 (302)
108 PF07767 Nop53: Nop53 (60S rib 27.8 51 0.0011 30.0 2.7 25 23-47 180-204 (387)
109 cd05535 POLBc_epsilon DNA poly 26.7 2.2E+02 0.0048 27.8 6.7 83 25-117 140-234 (621)
110 PLN02717 uridine nucleosidase 26.6 32 0.0007 30.4 1.1 26 6-31 126-155 (316)
111 cd02653 nuc_hydro_3 NH_3: A su 26.2 32 0.00069 30.5 1.0 27 6-32 122-152 (320)
112 cd02970 PRX_like2 Peroxiredoxi 26.1 2.2E+02 0.0048 21.0 5.7 39 19-57 24-62 (149)
113 COG1519 KdtA 3-deoxy-D-manno-o 25.6 2E+02 0.0043 26.7 6.0 90 21-137 231-326 (419)
114 cd02652 nuc_hydro_2 NH_2: A su 24.9 35 0.00075 30.0 1.0 26 6-31 118-154 (293)
115 PF01820 Dala_Dala_lig_N: D-al 24.7 2.7E+02 0.006 20.5 5.8 42 21-62 1-42 (117)
116 cd02647 nuc_hydro_TvIAG nuc_hy 24.5 33 0.00072 30.3 0.8 27 6-32 130-160 (312)
117 PF01156 IU_nuc_hydro: Inosine 24.4 32 0.0007 30.0 0.7 28 6-33 128-159 (312)
118 cd02969 PRX_like1 Peroxiredoxi 24.3 2.2E+02 0.0047 22.1 5.5 40 18-57 24-63 (171)
119 cd02649 nuc_hydro_CeIAG nuc_hy 23.2 34 0.00075 30.1 0.6 27 6-32 126-156 (306)
120 PF10828 DUF2570: Protein of u 23.2 1.1E+02 0.0024 22.5 3.3 29 202-230 79-107 (110)
121 cd00672 CysRS_core catalytic c 23.1 59 0.0013 27.0 2.0 13 27-39 28-40 (213)
122 COG0572 Udk Uridine kinase [Nu 22.8 1.7E+02 0.0037 24.6 4.7 33 18-54 6-38 (218)
123 PF07875 Coat_F: Coat F domain 22.3 27 0.00058 23.0 -0.2 39 199-237 25-63 (64)
124 PLN02369 ribose-phosphate pyro 22.0 5E+02 0.011 22.8 7.7 81 4-85 22-107 (302)
125 COG5654 Uncharacterized conser 21.7 30 0.00066 27.6 -0.0 15 23-39 31-45 (163)
126 PF13905 Thioredoxin_8: Thiore 21.6 2.7E+02 0.0059 18.9 5.2 36 21-56 3-39 (95)
127 cd00455 nuc_hydro nuc_hydro: N 21.3 39 0.00084 29.5 0.6 26 6-31 121-150 (295)
128 PRK00934 ribose-phosphate pyro 21.2 5.4E+02 0.012 22.2 8.0 82 4-86 30-115 (285)
129 KOG1015 Transcription regulato 20.7 2.4E+02 0.0053 29.4 5.8 32 26-64 707-738 (1567)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=2.5e-58 Score=390.52 Aligned_cols=235 Identities=72% Similarity=1.204 Sum_probs=203.9
Q ss_pred CCCCCChhhhccccc-ccCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHH
Q 026289 1 MDVPLPLEKLSLESK-TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRI 79 (240)
Q Consensus 1 ~~~~~p~~~~~~~~~-~~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~ 79 (240)
||+++|+.+++-.+. .++|..+|+||||||||||+||+.+++.|.+.++.+++++|+++++|++++++|+..+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl 80 (236)
T PLN02945 1 MDVPLPTEKLSCGANSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRI 80 (236)
T ss_pred CCCCchHHHHhhhhcCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHH
Confidence 899999999999998 5688899999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHhcCCceeeccccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhh
Q 026289 80 NLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICR 159 (240)
Q Consensus 80 ~Ml~~a~~~~~~i~v~~~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~ 159 (240)
+||++|+++++++.|++||+++++++||++||++++++|++.++++.++.+++||||+|++.+|++|++|++.+.++|++
T Consensus 81 ~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~ 160 (236)
T PLN02945 81 QMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICR 160 (236)
T ss_pred HHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999842222222347899999999999999988898765567999
Q ss_pred cccEEEEeCCCCChhhhhhchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCC
Q 026289 160 NFGVICIRREGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 235 (240)
Q Consensus 160 ~~~~vv~~R~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~ 235 (240)
.++++|+.|+|........+...+.....++++++..+..+||||+||+++++|.+++++||++|.+||++|+||.
T Consensus 161 ~~~~vV~~R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~i~~lvP~~V~~YI~~~~LY~ 236 (236)
T PLN02945 161 DYGVVCIRREGQDVEKLVSQDEILNENRGNILVVDDLVPNSISSTRVRECISRGLSVKYLTPDGVIDYIKEHGLYM 236 (236)
T ss_pred hCCEEEEeCCCCCHHHHhhcchhhhhCcCCEEEecccccccccHHHHHHHHHcCCCchhhCCHHHHHHHHHcCCCC
Confidence 9999999999987543322222333334567777543457899999999999999999999999999999999995
No 2
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=3.3e-52 Score=353.05 Aligned_cols=202 Identities=21% Similarity=0.269 Sum_probs=168.5
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcC----Ccee
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIM 93 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~----~~i~ 93 (240)
+++++||||||||||||+||+.+++.|.+.+++|+++ ++|++++++|+..+++++|++||++|+++. +++.
T Consensus 19 ~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~-----~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~~~~~~~~~~ 93 (243)
T PRK06973 19 ARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELV-----LIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVR 93 (243)
T ss_pred CCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEE-----EEECCcCCCCCCCCCHHHHHHHHHHHHHhccCCCceEE
Confidence 4667899999999999999999999999999999987 567788888877889999999999999964 4799
Q ss_pred eccccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCCh
Q 026289 94 VDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDV 173 (240)
Q Consensus 94 v~~~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~ 173 (240)
|+++|++++|++||++||++|+++|+ | +.+++||||+|++.+|++|+.| ++|++.++++|+.|+|++.
T Consensus 94 v~~~Ei~~~g~syTidTL~~l~~~~~-----p--~~~~~fiiG~D~l~~l~~W~~~-----~~L~~~~~lvV~~R~g~~~ 161 (243)
T PRK06973 94 VATDEIEHAGPTYTVDTLARWRERIG-----P--DASLALLIGADQLVRLDTWRDW-----RRLFDYAHLCAATRPGFDL 161 (243)
T ss_pred EeHhhhhCCCCCcHHHHHHHHHHHcC-----C--CCCEEEEEchhhHhhcCCcccH-----HHHHHhCCEEEEECCCCCc
Confidence 99999999999999999999999993 3 3689999999999999985555 8999999999999999754
Q ss_pred hhhhh-----------chHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcC--------CCCCCCCcHHHHHHHHHCCCC
Q 026289 174 EKIIS-----------DNEILDKNKGNIKLVDELVPNQISSTRIRDCICRG--------LSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 174 ~~~~~-----------~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g--------~~i~~lvp~~V~~yI~~~~LY 234 (240)
..... ....+........++...+..+||||+||+++++| ++++++||++|++||++|+||
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ISST~IR~~l~~g~~~~~~~~~~i~~lvP~~V~~YI~~~~LY 241 (243)
T PRK06973 162 GAASPAVAAEIAARQADADVLQATPAGHLLIDTTLAFDLSATDIRAHLRACIARRAQVPDASAEHVPAAVWAYILQHRLY 241 (243)
T ss_pred ccchhHHHHHHhhhhhhhhhhhcCCCceEEEcCCCcccccHHHHHHHHHcCCCcccccCCChhHhCCHHHHHHHHHcCCC
Confidence 31100 01112222223444443566899999999999999 899999999999999999999
Q ss_pred CC
Q 026289 235 LN 236 (240)
Q Consensus 235 ~~ 236 (240)
..
T Consensus 242 ~~ 243 (243)
T PRK06973 242 HR 243 (243)
T ss_pred CC
Confidence 63
No 3
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=100.00 E-value=2.5e-51 Score=344.97 Aligned_cols=211 Identities=51% Similarity=0.882 Sum_probs=179.7
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCC-eEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~-~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
+|++|||||||||+||+.+++.|.+.++.++ +.+++++++|++++++|+..+++++|++||++|+++.+++.|+++|..
T Consensus 1 ~~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 1 VVLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred CEEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 4899999999999999999999999998877 678888899999998998889999999999999999999999999999
Q ss_pred CCCccChHHHHHHHHHHHhhhccCC-------------CCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEe
Q 026289 101 QSGYQRTLTVLSRVKNFLIEAGLIS-------------TESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIR 167 (240)
Q Consensus 101 ~~~~~~t~~tl~~l~~~~~~~~~~p-------------~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~ 167 (240)
+++++||++||+++++.|++. +| ..+.+++||||+|++.+|++|+.|++.++++|++.++++|+.
T Consensus 81 ~~~~syT~~TL~~l~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~~vv~~ 158 (225)
T cd09286 81 QPEWMRTAKVLRHHREEINNK--YGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLVVVE 158 (225)
T ss_pred CCccccHHHHHHHHHHHhccc--ccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCCEEEEe
Confidence 999999999999999998410 00 013689999999999999998889864469999999999999
Q ss_pred CCCCChhhhhhchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCC
Q 026289 168 REGQDVEKIISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 168 R~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY 234 (240)
|+|..........+.+.+...++.+++.....+||||+||+++++|++++++||++|.+||++|+||
T Consensus 159 R~g~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~l~~g~~~~~llp~~V~~YI~~~~LY 225 (225)
T cd09286 159 RTGSDPENFIASSDILRKYQDNIHLVKDWIPNDISSTKVRRALRRGMSVKYLLPDPVIEYIEQHQLY 225 (225)
T ss_pred CCCCCHHHhhhccchhHHhhCCEEEEecCcccccChHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 9997654322221233344467887764344599999999999999999999999999999999999
No 4
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=1e-50 Score=332.86 Aligned_cols=193 Identities=31% Similarity=0.400 Sum_probs=167.9
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC--CCCCHHHHHHHHHHHHhcCCceeeccc
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPW 97 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~--~~~~~~~R~~Ml~~a~~~~~~i~v~~~ 97 (240)
.++||||||||||||.||+.+|+.|.+.+++|+|+ ++|+..+++|+ ..++.++|++||++|+++.+.+.|+++
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi-----~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~ 76 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVI-----FLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDR 76 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEE-----EecCCCCCCCCCccCCCHHHHHHHHHHHHhcCCCcceeHH
Confidence 57899999999999999999999999999999977 56777888876 489999999999999999999999999
Q ss_pred cccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCC-hhhh
Q 026289 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQD-VEKI 176 (240)
Q Consensus 98 E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~-~~~~ 176 (240)
|+++.+++||++||++++++++ |+ .++|||||+|++.+|++|++| ++|++.++++|+.|+++. ....
T Consensus 77 e~~r~g~sYT~dTl~~~~~~~~-----p~--~~~~fIiGaD~l~~l~~W~~~-----~ell~~~~~vv~~Rp~~~~~~~~ 144 (197)
T COG1057 77 EIKRGGPSYTIDTLEHLRQEYG-----PD--VELYFIIGADNLASLPKWYDW-----DELLKLVTFVVAPRPGYGELELS 144 (197)
T ss_pred HHHcCCCcchHHHHHHHHHHhC-----CC--CcEEEEEehHHhhhhhhhhhH-----HHHHHhCCEEEEecCCchhhhhh
Confidence 9999999999999999997775 54 689999999999999975555 899999999999999984 2111
Q ss_pred hhchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCC
Q 026289 177 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 236 (240)
Q Consensus 177 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~ 236 (240)
+......+.+++ .+..+||||+||+.+..|.++..++|++|.+||.+++||..
T Consensus 145 ------~~~~~~~~~~~~-~~~~~ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~LY~~ 197 (197)
T COG1057 145 ------LLSSGGAIILLD-LPRLDISSTEIRERIRRGASVDYLLPDSVLSYIEERGLYRG 197 (197)
T ss_pred ------hhcCCceEEEcc-CccccCchHHHHHHHhCCCCchhcCCHHHHHHHHHhccccC
Confidence 111123355554 67889999999999999999999999999999999999963
No 5
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=1.6e-50 Score=333.60 Aligned_cols=190 Identities=29% Similarity=0.448 Sum_probs=161.9
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC--CCCCHHHHHHHHHHHHhcCCceeeccccccCC
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~--~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~ 102 (240)
||||||||||+||+.|++.|++.+++|++++ +|+..+++|+ ..+++++|++||++|+++.+++.|+++|++++
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~-----~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 75 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIF-----VPTANPPHKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRG 75 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEE-----EeCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCC
Confidence 6899999999999999999999998888874 4566666775 46899999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhh-hchH
Q 026289 103 GYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKII-SDNE 181 (240)
Q Consensus 103 ~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~-~~~~ 181 (240)
+++||++||++|+++| |+ .+++||||+|++.+|.+|+.| ++|++.++++|+.|+|...+... ....
T Consensus 76 ~~syT~~tl~~l~~~~------p~--~~~~~iiG~D~l~~l~~W~~~-----~~i~~~~~~iv~~R~g~~~~~~~~~~~~ 142 (193)
T TIGR00482 76 GPSYTIDTLKHLKKKY------PD--VELYFIIGADALRSFPLWKDW-----QELLELVHLVIVPRPGYTLDKALLEKAI 142 (193)
T ss_pred CCCCHHHHHHHHHHHC------CC--CeEEEEEcHHHhhhhccccCH-----HHHHHhCcEEEEeCCCCCcchhhhHHHH
Confidence 9999999999999998 53 689999999999999974444 89999999999999997643211 1000
Q ss_pred HhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCC
Q 026289 182 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 182 ~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY 234 (240)
.+ ....++.+++ .+..+||||+||+++++|++++++||++|++||++|+||
T Consensus 143 ~~-~~~~~i~~~~-~~~~~iSST~IR~~l~~g~~~~~lvP~~V~~YI~~~~LY 193 (193)
T TIGR00482 143 LR-MHHGNLTLLH-NPRVPISSTEIRQRIRQGKSIEYLLPDPVIKYIKQHGLY 193 (193)
T ss_pred hc-ccCCcEEEEc-CCccccCHHHHHHHHHcCCCchhhCCHHHHHHHHHhCCC
Confidence 01 1234677776 466899999999999999999999999999999999999
No 6
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=3.3e-50 Score=334.12 Aligned_cols=198 Identities=26% Similarity=0.377 Sum_probs=167.7
Q ss_pred CceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC--CCCCHHHHHHHHHHHHhcCCceeecc
Q 026289 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLACKSSDFIMVDP 96 (240)
Q Consensus 19 ~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~--~~~~~~~R~~Ml~~a~~~~~~i~v~~ 96 (240)
+.++||||||||||||+||+.|++.|++.++++.+++ +|+..+++|+ ..++.++|++||++|+++.+++.|++
T Consensus 2 ~~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~-----~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~ 76 (203)
T PRK00071 2 MMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWF-----LPNPGPPHKPQKPLAPLEHRLAMLELAIADNPRFSVSD 76 (203)
T ss_pred CCcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEE-----EeCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCceEEeH
Confidence 3467999999999999999999999999998888764 4555666664 58999999999999999999999999
Q ss_pred ccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhh
Q 026289 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 176 (240)
Q Consensus 97 ~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~ 176 (240)
+|+++++++||++||+++++.| |+ .+++||||+|++.+|++ |++. ++|++.++++|++|+|......
T Consensus 77 ~E~~~~~~syT~~tl~~l~~~~------p~--~~~~fiiG~D~l~~l~~---W~~~--~~i~~~~~~iv~~R~g~~~~~~ 143 (203)
T PRK00071 77 IELERPGPSYTIDTLRELRARY------PD--VELVFIIGADALAQLPR---WKRW--EEILDLVHFVVVPRPGYPLEAL 143 (203)
T ss_pred HHHhCCCCCCHHHHHHHHHHHC------CC--CcEEEEEcHHHhhhccc---ccCH--HHHHHhCcEEEEeCCCCCcccc
Confidence 9999999999999999999998 54 68999999999999997 5543 8999999999999998754321
Q ss_pred h-hchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCC
Q 026289 177 I-SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYL 235 (240)
Q Consensus 177 ~-~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~ 235 (240)
. .....+.....++.+++ .+..+||||+||+++++|++++++||++|.+||++|+||+
T Consensus 144 ~~~~~~~~~~~~~~i~~~~-~~~~~ISST~IR~~l~~g~~~~~lvp~~V~~YI~~~~LY~ 202 (203)
T PRK00071 144 ALPALQQLLEAAGAITLLD-VPLLAISSTAIRERIKEGRPIRYLLPEAVLDYIEKHGLYR 202 (203)
T ss_pred chhHHHHhhccCCCEEEEe-CCCCccCHHHHHHHHHcCCChhHhCCHHHHHHHHHhCccC
Confidence 1 00111211245788886 5678999999999999999999999999999999999996
No 7
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=4.1e-47 Score=313.03 Aligned_cols=191 Identities=28% Similarity=0.374 Sum_probs=162.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC-CCCCHHHHHHHHHHHHhcCCceeeccccccC
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~-~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~ 101 (240)
||||||||||||.||+.|++.|.+.++.|++++ +|+.++++|+ ..+++++|++||++++++.+++.|+++|+++
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~-----~~~~~~~~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~ 75 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLL-----LPSANPPHKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKR 75 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEE-----EeCCCCCCCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhC
Confidence 689999999999999999999999998888875 4555566664 7889999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchH
Q 026289 102 SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNE 181 (240)
Q Consensus 102 ~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~ 181 (240)
++++||++||+++++.| |+ .+++||||+|++.++++ |+++ ++|++.++++|+.|+|.........
T Consensus 76 ~~~~~t~~tl~~l~~~~------p~--~~~~~liG~D~l~~~~~---W~~~--~~i~~~~~~iv~~R~g~~~~~~~~~-- 140 (192)
T cd02165 76 DGPSYTIDTLEELRERY------PN--AELYFIIGSDNLIRLPK---WYDW--EELLSLVHLVVAPRPGYPIEDASLE-- 140 (192)
T ss_pred CCCCCHHHHHHHHHHhc------cC--CCEEEEEcHHHhhhccc---ccCH--HHHHHhCcEEEEeCCCCCcccchhh--
Confidence 99999999999999998 43 68999999999999986 6554 8999999999999998754321110
Q ss_pred HhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCC
Q 026289 182 ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 182 ~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY 234 (240)
.......++.+++ .+..+||||+||++++.|.++.++||++|.+||++|+||
T Consensus 141 ~~~~~~~~~~~~~-~~~~~iSST~IR~~~~~g~~~~~lvp~~V~~yI~~~~lY 192 (192)
T cd02165 141 KLLLPGGRIILLD-NPLLNISSTEIRERLKNGKSIRYLLPPAVADYIKEHGLY 192 (192)
T ss_pred hhccCCCcEEEec-CCccccCHHHHHHHHHcCCChhHhCCHHHHHHHHHccCC
Confidence 0111224566665 467899999999999999999999999999999999999
No 8
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=7.9e-46 Score=330.16 Aligned_cols=184 Identities=27% Similarity=0.299 Sum_probs=158.8
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC-C-CCCHHHHHHHHHHHHhcCCceeecccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-G-LISAEHRINLCNLACKSSDFIMVDPWE 98 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~-~-~~~~~~R~~Ml~~a~~~~~~i~v~~~E 98 (240)
|+||||||||||||+||+.|++.|.+.+++|+++ ++|+..+++|+ . ..+.++|++||++|+++.+++.++++|
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~-----~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E 75 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLF-----FVPTYINPFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFE 75 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEE-----EEeCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHH
Confidence 4699999999999999999999999999999987 45677777885 3 444599999999999999999999999
Q ss_pred ccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhh
Q 026289 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS 178 (240)
Q Consensus 99 ~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~ 178 (240)
+++++++||++||++|+++| |+ .+++||||+|++.+|++|+.| ++|++.++++|++|+|......
T Consensus 76 ~~~~~~syt~~tl~~l~~~~------p~--~~~~~iiG~D~~~~l~~W~~~-----~~l~~~~~~iv~~R~g~~~~~~-- 140 (342)
T PRK07152 76 IKRQNVSYTIDTIKYFKKKY------PN--DEIYFIIGSDNLEKFKKWKNI-----EEILKKVQIVVFKRKKNINKKN-- 140 (342)
T ss_pred HhCCCCCcHHHHHHHHHHhC------CC--CcEEEEecHHHhhhcccccCH-----HHHHHhCCEEEEECCCCCcccc--
Confidence 99999999999999999998 54 689999999999999975444 8999999999999998654211
Q ss_pred chHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCC
Q 026289 179 DNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLN 236 (240)
Q Consensus 179 ~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~ 236 (240)
+. ..++.+++ .+..+||||+||++++.|+ ||++|++||++|+||..
T Consensus 141 ----~~--~~~i~~~~-~~~~~iSST~IR~~~~~~~-----vP~~V~~YI~~~~LY~e 186 (342)
T PRK07152 141 ----LK--KYNVLLLK-NKNLNISSTKIRKGNLLGK-----LDPKVNDYINENFLYLE 186 (342)
T ss_pred ----cc--cCcEEEec-CCccccCHHHHHHHHHcCC-----CCHHHHHHHHHcCcccc
Confidence 11 13577776 4668999999999999875 99999999999999964
No 9
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=6.2e-46 Score=300.98 Aligned_cols=167 Identities=21% Similarity=0.249 Sum_probs=143.2
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcC--Cceeecccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDPWE 98 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~--~~i~v~~~E 98 (240)
++||||||||||||.||+.+++.+ + ++|+++++ |+.+++.++..+++++|++|+++|+++. +++.|+++|
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~--~~d~v~~v-----P~~~~~~~k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E 73 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-S--HFDLVLLV-----PSIAHAWGKTMLDYETRCQLVDAFIQDLGLSNVQRSDIE 73 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-h--cCCEEEEE-----ECCCCcccCCCCCHHHHHHHHHHHHhccCCCceEEehHH
Confidence 369999999999999999999984 2 56888754 5553333447789999999999999985 799999999
Q ss_pred ccC---CCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhh
Q 026289 99 ANQ---SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 175 (240)
Q Consensus 99 ~~~---~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~ 175 (240)
.++ ++++||++||++++++| |+ .+++||||+|++.+|+.|++| ++|++.+.+++++|
T Consensus 74 ~~~~~~~~~~yT~~tl~~l~~~~------p~--~~~~~iiG~D~l~~l~~W~~~-----~~i~~~~~l~~~~~------- 133 (174)
T PRK08887 74 QELYAPDESVTTYALLTRLQELY------PE--ADLTFVIGPDNFLKFAKFYKA-----DEITQRWTVMACPE------- 133 (174)
T ss_pred hhhccCCCCcchHHHHHHHHHHC------CC--CeEEEEEccchHHHHHHhCCH-----HHHHhhCeEEEeCC-------
Confidence 987 78899999999999999 54 689999999999999975444 78999999887633
Q ss_pred hhhchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCCC
Q 026289 176 IISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 237 (240)
Q Consensus 176 ~~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 237 (240)
..+||||+||++++.|++++++||++|.+||++|+||..+
T Consensus 134 ----------------------~~~ISST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 173 (174)
T PRK08887 134 ----------------------KVPIRSTDIRNALQNGKDISHLTTPGVARLLKEHQLYTEP 173 (174)
T ss_pred ----------------------CCCcCHHHHHHHHHcCCChhHhCCHHHHHHHHHccccCCC
Confidence 2379999999999999999999999999999999999754
No 10
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8e-41 Score=268.58 Aligned_cols=222 Identities=49% Similarity=0.821 Sum_probs=189.6
Q ss_pred ccCCceEEEEEcCCCCchhHHHHHHHHHHHHHh-ccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceee
Q 026289 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 94 (240)
Q Consensus 16 ~~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~-~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v 94 (240)
++.+.+.+++.+||||||+++|+.|++.|+.++ +..++.||.+++||.+++|.|+.+++..+|+.|+++|.+...|+.+
T Consensus 3 ~~~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~v 82 (234)
T KOG3199|consen 3 DSEKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLMV 82 (234)
T ss_pred CcccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhccccceec
Confidence 345667889999999999999999999999999 6678999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccChHHHHHHHHHHHhhh------ccCCCCCceEEEEEcchhhhhcCCCCC-CChhhHHHHhhcccEEEEe
Q 026289 95 DPWEANQSGYQRTLTVLSRVKNFLIEA------GLISTESLKVMLVCGSDLLESFAIPGF-WMPEQVWTICRNFGVICIR 167 (240)
Q Consensus 95 ~~~E~~~~~~~~t~~tl~~l~~~~~~~------~~~p~~~~~~~fl~G~D~l~~l~~~~~-w~~~~~~~l~~~~~~vv~~ 167 (240)
|.||.-|+..+-|++.|+|.++..... .+.+..+..+.++||.|.+..|..|.- |...++..++.+++++|++
T Consensus 83 D~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv~ 162 (234)
T KOG3199|consen 83 DGWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCVT 162 (234)
T ss_pred chhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCcchhhHHHHHhhCcEEEEe
Confidence 999999999999999999998754321 111123578999999999999999854 8777889999999999999
Q ss_pred CCCCChhhhhhchH-HhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCCC
Q 026289 168 REGQDVEKIISDNE-ILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 237 (240)
Q Consensus 168 R~~~~~~~~~~~~~-~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 237 (240)
|.|.+...++...+ .+......+.+.++...++||||.||+++++|++|++++|+.|++||++|+||...
T Consensus 163 r~gsD~~~~i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~PD~Vi~yI~~h~LY~~~ 233 (234)
T KOG3199|consen 163 REGSDVENFLSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLTPDSVIEYIREHNLYSSE 233 (234)
T ss_pred ccCCCHHHHHhccHHHHHhhcceEEEeeeeecCCcchHHHHHHHHcCCeeEeeCcHHHHHHHHHhhchhcc
Confidence 99999988776534 44443344445444445899999999999999999999999999999999999753
No 11
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=100.00 E-value=2.9e-34 Score=228.75 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=120.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeeccccccCC
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~ 102 (240)
||||||||||+|.||+.+++.|.+.+ |+++++ |+ .+++|+..++.++|++|+++|+++.+++.|+++|
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~-----~~-~~p~k~~~~~~~~R~~m~~~a~~~~~~~~v~~~e---- 68 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVA-----VA-KNPSKKPLFSLEERVELIKDATKHLPNVRVDVFD---- 68 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEE-----Ec-CCCCCCCCcCHHHHHHHHHHHHhhCCCeEEcCcc----
Confidence 68999999999999999999999986 777654 44 3466777899999999999999999999999998
Q ss_pred CccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchHH
Q 026289 103 GYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 182 (240)
Q Consensus 103 ~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~~ 182 (240)
+||++|+++++. .+|++|.|++.+ | +++++.+. +.|.. ..
T Consensus 69 --~yt~dt~~~l~~--------------~~~i~G~~~~~~------~-----~~~~~~~~---~~r~~---~~------- 108 (155)
T TIGR01510 69 --GLLVDYAKELGA--------------TFIVRGLRAATD------F-----EYELQMAL---MNKHL---AP------- 108 (155)
T ss_pred --chHHHHHHHcCC--------------CEEEecCcchhh------H-----HHHHHHHh---hCccc---cc-------
Confidence 599999998751 258899887754 3 34554444 34521 00
Q ss_pred hhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHC
Q 026289 183 LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 231 (240)
Q Consensus 183 l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~ 231 (240)
....++++...+..+||||.||++++.|++++++||++|++||+++
T Consensus 109 ---~~~~i~~~~~~~~~~iSST~IR~~i~~g~~~~~lvP~~V~~YI~~~ 154 (155)
T TIGR01510 109 ---EIETVFLMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLKAK 154 (155)
T ss_pred ---CCcEEEEeCCcchhhccHHHHHHHHHcCCChhHHCCHHHHHHHHHh
Confidence 0124555553334599999999999999999999999999999985
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=100.00 E-value=8.3e-34 Score=225.66 Aligned_cols=153 Identities=21% Similarity=0.211 Sum_probs=121.6
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeeccccccCC
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~ 102 (240)
||||||||||+|.||+.+++.|.+.+ |+++++ |+.+ ++|+..++.++|++|+++|+++.+++.|+++|
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~-----~~~~-~~k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e---- 68 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVA-----VAVN-PSKKPLFSLEERVELIREATKHLPNVEVDGFD---- 68 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEE-----EcCC-CCCCCCCCHHHHHHHHHHHHcCCCCEEecCCc----
Confidence 68999999999999999999999986 777654 4433 35667899999999999999999999999986
Q ss_pred CccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchHH
Q 026289 103 GYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 182 (240)
Q Consensus 103 ~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~~ 182 (240)
+||++|++++++ + +|++|.|++.++. .++ .++++.|++...
T Consensus 69 --s~t~~~l~~l~~-------------~-~~i~G~d~~~~~e-----------~~~---~~~~~~r~~~~~--------- 109 (153)
T cd02163 69 --GLLVDFARKHGA-------------N-VIVRGLRAVSDFE-----------YEF---QMAGMNRKLAPE--------- 109 (153)
T ss_pred --chHHHHHHHcCC-------------C-EEEECCcchhhHH-----------HHH---HHHHhCCCCCCC---------
Confidence 799999988752 2 5899999886652 232 444578876321
Q ss_pred hhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHH
Q 026289 183 LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRE 230 (240)
Q Consensus 183 l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~ 230 (240)
...++++......+||||.||++++.|++++++||++|.+||++
T Consensus 110 ----~~~i~~~~~~~~~~iSST~IR~~~~~g~~i~~lvP~~V~~yI~~ 153 (153)
T cd02163 110 ----IETVFLMASPEYSFISSSLVKEIARFGGDVSGFVPPVVAKALKE 153 (153)
T ss_pred ----CcEEEEeCCCccceecHHHHHHHHHcCCChhHhCCHHHHHHHhC
Confidence 02456665323357999999999999999999999999999975
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.98 E-value=3.1e-32 Score=217.94 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
+++|||||||||+|.||+.+++.|.+.+ |+++++ |+.+ ++|+..+++++|++|+++|+++.+++.|+++|
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~-----~~~~-~~k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e-- 70 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVA-----VAIN-PSKKPLFSLEERVELIREATAHLPNVEVVSFD-- 70 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEE-----ECCC-CCCCCCCCHHHHHHHHHHHHcCCCCEEEecCC--
Confidence 3689999999999999999999999986 777643 3333 36777899999999999999999999999887
Q ss_pred CCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhch
Q 026289 101 QSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDN 180 (240)
Q Consensus 101 ~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~ 180 (240)
+||++|++.++ + -+|+.|.|++. .| +.+++.+. ++|++...
T Consensus 71 ----~~t~~~~~~~~---------~-----~~~~~gl~~w~------d~-----e~~~~~~~---~~r~~~~~------- 111 (159)
T PRK00168 71 ----GLLVDFAREVG---------A-----TVIVRGLRAVS------DF-----EYEFQMAG---MNRKLAPE------- 111 (159)
T ss_pred ----ccHHHHHHHcC---------C-----CEEEecCcchh------hH-----HHHHHHHH---hCCCCCCC-------
Confidence 68999987653 1 25788888653 24 34444333 67776421
Q ss_pred HHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHC
Q 026289 181 EILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 231 (240)
Q Consensus 181 ~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~ 231 (240)
...++++......+||||.||++++.|++++++||++|.+||+++
T Consensus 112 ------~~~i~~~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI~~~ 156 (159)
T PRK00168 112 ------IETVFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKEK 156 (159)
T ss_pred ------CcEEEEeCCCCcceecHHHHHHHHHcCCChhHHCCHHHHHHHHHH
Confidence 134555553333689999999999999999999999999999886
No 14
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.96 E-value=1.5e-29 Score=199.75 Aligned_cols=155 Identities=32% Similarity=0.475 Sum_probs=113.2
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc--CCCCCHHHHHHHHHHHHhcCCceeeccccccCC
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k--~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~ 102 (240)
+|||||||+|.||+.+++.|.+.++.+.++++++. .+++| +..++.++|++|+++++.+.+++.|++||..+.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~-----~~~~k~~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~ 75 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSD-----NSPHKDKKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD 75 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEE-----HHCHSTTSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccccccccccc-----ccccccccccCcHHHHHHHHHHHHhhcCCccccchhHHhH
Confidence 69999999999999999999999876556655433 34444 368999999999999999999999999998776
Q ss_pred CccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchHH
Q 026289 103 GYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 182 (240)
Q Consensus 103 ~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~~ 182 (240)
++.+ |+ .+++|++|.|++.++.. |++. +++++.++++|+.|++............
T Consensus 76 ------------~~~~------~~--~~~~~v~g~D~~~~~~~---~~~~--~~~~~~~~~~v~~r~~~~~~~~~~~~~~ 130 (157)
T PF01467_consen 76 ------------KKKY------PD--VKIYFVIGADNLRNFPK---WRDW--QEILKEVNIIVVSRGGDDPIETISDDEI 130 (157)
T ss_dssp ------------HHHS------TS--SCEEEEEECTHHEEEEE---STTH--HHHHHHHHEEEEEHHHTTTHEEEEHCHH
T ss_pred ------------hhhc------cc--cccceeccCCceeeecC---CCcH--HHHHHhCCEEEEEcCCCCccchhhhccc
Confidence 3455 43 68999999999999995 6553 8899999999999986543221111122
Q ss_pred hhhcCCCEEEEcCCCCCCCCHHHHHHH
Q 026289 183 LDKNKGNIKLVDELVPNQISSTRIRDC 209 (240)
Q Consensus 183 l~~~~~~i~~l~~~~~~~iSST~IR~~ 209 (240)
+......+.++......+||||+||++
T Consensus 131 ~~~~~~~~~~~~~~~~~~iSST~IR~~ 157 (157)
T PF01467_consen 131 LEKYPLGIIFILDPPRNEISSTEIRER 157 (157)
T ss_dssp HHHTTCEEEEEEEGGGTTSSHHHHHHH
T ss_pred cccccceeEEEecCCCCccCHHHHhcC
Confidence 333333444444345667999999985
No 15
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.90 E-value=7.5e-23 Score=164.00 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=94.6
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc-CCCCCHHHHHHHHHHHHhcCCceeeccccccCC
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~ 102 (240)
|+|||||||+|+||+.+++.|.+.+ |+++++ +++++.++| ++++++++|++|++.++++.+...+...-. +
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~----i~s~~~~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~--~ 73 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEV--DELIIG----IGSAQESHTLENPFTAGERILMITQSLKEVGDLTYYIIPI--E 73 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHC--CEEEEE----EcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEec--C
Confidence 7999999999999999999999985 787652 466666666 478999999999999998754221111100 0
Q ss_pred CccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchHH
Q 026289 103 GYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNEI 182 (240)
Q Consensus 103 ~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~~ 182 (240)
+++.-. .|... ++.++..++.+... + ... ...
T Consensus 74 ----d~~~~~-----------------------------------~w~~~-v~~~~p~~D~vf~~-~--~~~-----~~~ 105 (165)
T TIGR01527 74 ----DIERNS-----------------------------------IWVSY-VESMTPPFDVVYSN-N--PLV-----RRL 105 (165)
T ss_pred ----CccHHH-----------------------------------HHHHH-HHHhCCCCCEEEEC-C--HHH-----HHH
Confidence 001101 12111 12222223322211 1 000 011
Q ss_pred hhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCC
Q 026289 183 LDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 232 (240)
Q Consensus 183 l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~ 232 (240)
+.+.+-.+..++......+|||+||+.+..|++|++|||++|++||++-+
T Consensus 106 f~e~g~~v~~~p~~~r~~~S~T~IR~~i~~~~~W~~lVP~~v~~~i~~i~ 155 (165)
T TIGR01527 106 FKEAGYEVKRPPMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEIK 155 (165)
T ss_pred HHHcCCEEEECCCcCCCcccHHHHHHHHHcCCChhhhCCHHHHHHHHHcC
Confidence 22222222222211245899999999999999999999999999999864
No 16
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.89 E-value=7.3e-23 Score=164.33 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=96.8
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc-CCCCCHHHHHHHHHHHHhcCC----ceeecccc
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSD----FIMVDPWE 98 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k-~~~~~~~~R~~Ml~~a~~~~~----~i~v~~~E 98 (240)
|||||||||+|.||+.+++.|.+.+ |+++++ +|+++++++ ++.+++++|++|+++++++.+ ++.+.+.+
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~----v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~ 75 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEV--DELIIG----IGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVP 75 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CEEEEE----ecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecC
Confidence 7999999999999999999999986 787642 566666655 468999999999999997642 33332221
Q ss_pred ccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhh
Q 026289 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS 178 (240)
Q Consensus 99 ~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~ 178 (240)
|. ..-. .|... ++..+..+++++.+++ ..
T Consensus 76 ---------------------------------------d~-~~~~---~w~~~-v~~~vp~~div~~g~~---~~---- 104 (163)
T cd02166 76 ---------------------------------------DI-ERNS---LWVSY-VESLTPPFDVVYSGNP---LV---- 104 (163)
T ss_pred ---------------------------------------CC-CchH---HHHHH-HHHHCCCCCEEEECch---HH----
Confidence 11 0000 13221 2223333444444331 00
Q ss_pred chHHhhhcCCCEEEEcCC--CCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCC
Q 026289 179 DNEILDKNKGNIKLVDEL--VPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 179 ~~~~l~~~~~~i~~l~~~--~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY 234 (240)
...+.+++ +.++... ....+|||.||+.+.+|++|+.+||++|.+||.+.+.-
T Consensus 105 -~~~f~~~g--~~v~~~p~~~~~~~s~t~iR~~~~~~~~~~~~vp~~v~~~l~~~~~~ 159 (163)
T cd02166 105 -ARLFKEAG--YEVRRPPMFNREEYSGTEIRRLMLGGEDWEELVPKSVAEVIKEIGGV 159 (163)
T ss_pred -HHhhhhcC--CeEecCCcccCCCCCHHHHHHHHHcCCchhhcCCHHHHHHHHHcCCh
Confidence 01111221 2222211 13469999999999999999999999999999987653
No 17
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.89 E-value=1.5e-22 Score=157.18 Aligned_cols=156 Identities=22% Similarity=0.221 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
++++||.|||||+|+||+.++++|.+.+ |+++|. .. .+|.|+.+++.++|++|++.++++.+++.|..++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVa-V~-----~np~K~plFsleER~~l~~~~~~~l~nV~V~~f~~- 72 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVA-VA-----INPSKKPLFSLEERVELIREATKHLPNVEVVGFSG- 72 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEE-EE-----eCCCcCCCcCHHHHHHHHHHHhcCCCceEEEeccc-
Confidence 5799999999999999999999999987 777543 22 34468899999999999999999999999987653
Q ss_pred CCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhch
Q 026289 101 QSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDN 180 (240)
Q Consensus 101 ~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~ 180 (240)
.++|..+ +.+ --++|-|-.+..+|. |. -++.. ++|.
T Consensus 73 -----Llvd~ak----~~~----------a~~ivRGLR~~sDfe----YE----~qma~------~N~~----------- 108 (159)
T COG0669 73 -----LLVDYAK----KLG----------ATVLVRGLRAVSDFE----YE----LQMAH------MNRK----------- 108 (159)
T ss_pred -----HHHHHHH----HcC----------CCEEEEeccccchHH----HH----HHHHH------HHHh-----------
Confidence 3333333 221 237899999998886 41 12211 1221
Q ss_pred HHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHC
Q 026289 181 EILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRES 231 (240)
Q Consensus 181 ~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~ 231 (240)
|...-+.+++........||||.||+...-|.+++.+||+.|.+-+++.
T Consensus 109 --L~~eveTvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l~~k 157 (159)
T COG0669 109 --LAPEVETVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARALRAK 157 (159)
T ss_pred --hcccccEEEecCCcceehhhHHHHHHHHHhCCCchhhCCHHHHHHHHHh
Confidence 1111246777765567899999999999999999999999999998864
No 18
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.88 E-value=4.8e-22 Score=161.93 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=92.7
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC-CccccCCCCCHHHHHHHHHHHHhcCC----ceeecccc
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKKRGLISAEHRINLCNLACKSSD----FIMVDPWE 98 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~-~~~~k~~~~~~~~R~~Ml~~a~~~~~----~i~v~~~E 98 (240)
|||||||||+|+||+.+++.|++.+ ++++++ ++++ .++.+++++++++|++|+++++.+.+ ++.+-.++
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~----i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~ 75 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIIL----IGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFRPLR 75 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEE----eCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEEecC
Confidence 7999999999999999999999987 577653 3344 33456688999999999999987642 34443333
Q ss_pred ccCCCccChHH-HHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhh
Q 026289 99 ANQSGYQRTLT-VLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKII 177 (240)
Q Consensus 99 ~~~~~~~~t~~-tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~ 177 (240)
... |.-+ -..++++.-+.. ... +.++. ++|.|.=.+ . +
T Consensus 76 D~~----~~~~~W~~~v~~~v~~~--~~~-~~~i~-~~g~~kd~~--~---~---------------------------- 114 (181)
T cd02168 76 DHL----YSDNLWLAEVQQQVLEI--AGG-SASVG-LVGHRKDAS--S---Y---------------------------- 114 (181)
T ss_pred CCC----CChHHHHHHHHHhChHh--hCC-CCcEE-EeCCccCCC--c---c----------------------------
Confidence 211 0000 111221111000 000 11222 224333110 0 1
Q ss_pred hchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHc--CCCCCCCCcHHHHHHHHHCC
Q 026289 178 SDNEILDKNKGNIKLVDELVPNQISSTRIRDCICR--GLSIKYLTEDKVIDYIRESR 232 (240)
Q Consensus 178 ~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~--g~~i~~lvp~~V~~yI~~~~ 232 (240)
++..+ ..+.+++.....+||||.||+++.. |.+|+++||++|.+||++.+
T Consensus 115 ----~~~lf-pe~~~~~~p~~~~iSsT~IR~~i~~~~g~~~~~lvP~~V~~~I~~~~ 166 (181)
T cd02168 115 ----YLRSF-PQWDYLEVPNYPDLNATDIRRAYFEGKEAMYRAALPAGVYDFLTAFQ 166 (181)
T ss_pred ----ceeec-CCcCeecCccccccCHHHHHHHHHhcCCCChhHhCCHHHHHHHHHhC
Confidence 00001 1111222112248999999999999 66999999999999999864
No 19
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.87 E-value=7.1e-21 Score=154.11 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=94.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc-CCCCCHHHHHHHHHHHHhcCCceeeccccccC
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~ 101 (240)
.|||||||||+|+||+.+++.|.+. +|+++++ +++++++++ ++.+++++|++|+++++.+.+. ..
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~--~d~v~v~----i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~-~~------- 67 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEE--VDELIIG----IGSAQESHTLKNPFTAGERILMIRKALEEEGI-DL------- 67 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHh--CCEEEEE----ecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCC-Cc-------
Confidence 5999999999999999999999995 4888753 445555444 4689999999999999975431 00
Q ss_pred CCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchH
Q 026289 102 SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNE 181 (240)
Q Consensus 102 ~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~ 181 (240)
.++.++-..|.. .|..|..+ ++..+..+.++... ..+ . ..
T Consensus 68 ---------------------------~~~~~~pi~D~~----~~~~w~~~-v~~~~~~~d~v~~~-~~y-~------~~ 107 (174)
T PRK01153 68 ---------------------------SRYYIIPIPDIE----FNSIWVSH-VESYTPPFDVVYTG-NPL-V------AR 107 (174)
T ss_pred ---------------------------ceeeEecCCCcc----hHHHHHHH-HHHhCCCCCEEEEC-ChH-H------HH
Confidence 012222222221 01124221 22223333333222 100 0 00
Q ss_pred HhhhcCCCEEEEcCC--CCCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCC
Q 026289 182 ILDKNKGNIKLVDEL--VPNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESR 232 (240)
Q Consensus 182 ~l~~~~~~i~~l~~~--~~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~ 232 (240)
.+.++ ++.++... ...++|||.||+++..|++|+.+||++|.+||.+-+
T Consensus 108 ~f~~~--g~~v~~~p~~~~~~iSsT~IR~~i~~g~~w~~~VPp~V~~~i~~~~ 158 (174)
T PRK01153 108 LFREA--GYEVRQPPMFNREEYSGTEIRRRMIEGDPWEELVPKSVAEVIKEID 158 (174)
T ss_pred hchhh--CCeEecCCccccCCCCHHHHHHHHHcCCchhhhCCHHHHHHHHHhC
Confidence 11111 22222211 235899999999999999999999999999998764
No 20
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.83 E-value=5.9e-20 Score=143.11 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=96.5
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeeccccccC
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~ 101 (240)
++++|||||||+|.||+.+++.|.+.+ |+++++ |+.+ ++|+..++.++|++|++.++++.+++.|..++.
T Consensus 2 kiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~-----v~~n-p~K~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~-- 71 (140)
T PRK13964 2 KIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVV-----VSIN-PDKSNASDLDSRFKNVKNKLKDFKNVEVLINEN-- 71 (140)
T ss_pred eEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEE-----eccC-CCCCCCCCHHHHHHHHHHHHcCCCCcEEecCcC--
Confidence 589999999999999999999999976 777654 3333 467778999999999999999999988865431
Q ss_pred CCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhchH
Q 026289 102 SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISDNE 181 (240)
Q Consensus 102 ~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~~~ 181 (240)
..+++.. ++.+ --+.|.|-++..+|. | +. .+.. ++|.
T Consensus 72 ---~l~v~~~----~~~~----------a~~ivrGlR~~~Dfe----y---E~-~~a~------~n~~------------ 108 (140)
T PRK13964 72 ---KLTAEIA----KKLG----------ANFLIRSARNNIDFQ----Y---EI-VLAA------GNKS------------ 108 (140)
T ss_pred ---CcHHHHH----HHCC----------CeEEEEecCCCccHH----H---HH-HHHH------HHHh------------
Confidence 1344322 2331 248999999988876 3 11 1111 1111
Q ss_pred HhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcC
Q 026289 182 ILDKNKGNIKLVDELVPNQISSTRIRDCICRG 213 (240)
Q Consensus 182 ~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g 213 (240)
|...-..|+++.......||||.||+...-|
T Consensus 109 -l~~~ietvfl~~~~~~~~iSSs~vre~~~~~ 139 (140)
T PRK13964 109 -LNNDLETILIIPDYDKIEYSSTLLRHKKFLK 139 (140)
T ss_pred -hcCCCeEEEeecCCCCCEEeHHHHHHHHHcc
Confidence 1111246777765567899999999987755
No 21
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.83 E-value=6.4e-20 Score=163.42 Aligned_cols=162 Identities=18% Similarity=0.184 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCC--ceeeccc
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDPW 97 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~--~i~v~~~ 97 (240)
.+.+|||||||||+|+||+.+++.|++.+ |+++++ ++.++.++.+++++++++|++|++.++++.+ ++.+-.+
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~---i~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVL---IGSADLARSIKNPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEE---EccCCCCCcCCCCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 56899999999999999999999999987 788765 2333445566789999999999999998543 3444433
Q ss_pred cccC-CCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhh
Q 026289 98 EANQ-SGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKI 176 (240)
Q Consensus 98 E~~~-~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~ 176 (240)
+... ....+....-....+..+ |. .++. ++|.|.-. .. ++ ..++.
T Consensus 80 ~d~~~~~~~W~~~v~~~v~~~~~-----~~--~~~~-~~g~~~~~--~~---~~----~~~f~----------------- 125 (340)
T PRK05379 80 RDSLYNDSLWLAEVQAAVAEHAG-----AD--ARIG-LIGHEKDA--SS---YY----LRSFP----------------- 125 (340)
T ss_pred CCCCcChHHHHHHHHHHHHhccC-----CC--CcEE-EECCcCCC--Ch---HH----HHhcc-----------------
Confidence 3211 010011011001111110 21 2332 22533310 00 10 11111
Q ss_pred hhchHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHcCCCCCC---CCcHHHHHHHHHCC
Q 026289 177 ISDNEILDKNKGNIKLVDELVPNQISSTRIRDCICRGLSIKY---LTEDKVIDYIRESR 232 (240)
Q Consensus 177 ~~~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~g~~i~~---lvp~~V~~yI~~~~ 232 (240)
++ .+..+ .....+|||.||+++..|.+|.. +||++|.+||++-+
T Consensus 126 --------~~--~~~~~--~~~~~~s~T~iR~~~~~~~~~~~~~~~vP~~v~~~l~~~~ 172 (340)
T PRK05379 126 --------QW--ELVDV--PNTEDLSATEIRDAYFEGRISSFYGWAVPAPVYAFLEAFR 172 (340)
T ss_pred --------cc--ccccC--CcccccCccHHHHHHHcCCCchhhhhcCCHHHHHHHHHhc
Confidence 11 11111 13568999999999999998766 99999999998754
No 22
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.82 E-value=8.6e-20 Score=142.26 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=95.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHHHhcCCceeeccccc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~ 99 (240)
|++++|+|||+|.||+.+++.|.+.. .+.++++ |+.+++.+ +..++.++|++|++.+.++.. .+..++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~-----~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~--~v~~~~~ 72 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIII-----IVSNPPKKKRNKDPFSLHERVEMLKEILKDRL--KVVPVDF 72 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEE-----EcCCChhhcccccCCCHHHHHHHHHHhccCCc--EEEEEec
Confidence 58999999999999999999999976 4566543 33343333 368899999999999987333 3455555
Q ss_pred cCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhhc
Q 026289 100 NQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIISD 179 (240)
Q Consensus 100 ~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~~ 179 (240)
.....+++.+.+..+...++ ..++++|.|....+.. |++...+++...+.++++.|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~----------~~~~v~G~d~~~~~~~---~~~~~~~~~~~~~~vv~~~~~~--------- 130 (143)
T cd02039 73 PEVKILLAVVFILKILLKVG----------PDKVVVGEDFAFGKNA---SYNKDLKELFLDIEIVEVPRVR--------- 130 (143)
T ss_pred ChhhccCHHHHHHHHHHHcC----------CcEEEECCccccCCch---hhhHHHHHhCCceEEEeeEecC---------
Confidence 44455666655544433341 3589999999999985 6532234444445555555432
Q ss_pred hHHhhhcCCCEEEEcCCCCCCCCHHHHHHH
Q 026289 180 NEILDKNKGNIKLVDELVPNQISSTRIRDC 209 (240)
Q Consensus 180 ~~~l~~~~~~i~~l~~~~~~~iSST~IR~~ 209 (240)
....||||.||++
T Consensus 131 -----------------~~~~iSSt~IR~~ 143 (143)
T cd02039 131 -----------------DGKKISSTLIREL 143 (143)
T ss_pred -----------------CCcEEehHHhhcC
Confidence 1247999999973
No 23
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.77 E-value=2.3e-18 Score=137.56 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=59.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccc--cCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~--k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
||||||||||+|+||+.+++.|++.+ |+++++ |++.++. |++.++.++|++|++.++++.+++.|+.+|+.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi-----~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~ 73 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV--DELLII-----VGSDDTRDDARTGLPLEKRLRWLREIFPDQENIVVHTLNEP 73 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEE-----ECCCCcccccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 58999999999999999999999986 888755 3333333 35789999999999999999899999888873
No 24
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.75 E-value=2.5e-17 Score=134.59 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhc
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~ 88 (240)
...+|+|.|+|+|+|+||+.+++.|++.+ |.++++ +.-+..+...++++++.+|..|++.++.+
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~--devII~---IGSA~~s~t~~NPFTa~ER~~MI~~aL~e 66 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILA---LGSAQMERNIKNPFLAIEREQMILSNFSL 66 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEE---EccCCCCCCCCCCCCHHHHHHHHHHhcch
Confidence 46789999999999999999999999986 666543 22233334456899999999999999854
No 25
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.71 E-value=3.6e-17 Score=142.82 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
.+++..-|||||+|+||+.+++.|.+.++.+.++ ++|+ ++..+++++|++|+++++++.++++|-.++.
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~d~~~V~-----i~~~-----~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~- 182 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAENDWVHLF-----VVSE-----DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD- 182 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhCCeEEEE-----EEcC-----CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC-
Confidence 4677778999999999999999999988655554 4453 3457899999999999999999988876553
Q ss_pred CCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhh-HHHHh-h--cccEEEEeCC---CCCh
Q 026289 101 QSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQ-VWTIC-R--NFGVICIRRE---GQDV 173 (240)
Q Consensus 101 ~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~-~~~l~-~--~~~~vv~~R~---~~~~ 173 (240)
++++.+ +| |. ||+--.|.+..-.. +....+ ++ ++ + .+.-+|+.-+ |..-
T Consensus 183 -----l~v~~~-----~~------~~-----~~~~~~~~~~~~~a--~lsa~~Fi~-iL~~~l~~~~ivvG~Df~FG~~r 238 (297)
T cd02169 183 -----YIISSA-----TF------PS-----YFIKEQDVVIKAQT--ALDARIFRK-YIAPALNITKRYVGEEPFSRVTA 238 (297)
T ss_pred -----eeeccc-----cC------hh-----hhcCChhHHHHHHh--cCCHHHHHH-HHHHHcCCcEEEEcCCCCCCCcc
Confidence 222221 23 32 66666654433222 122211 12 33 2 2344444221 1110
Q ss_pred hhhhhchHHhhh---cCCCEEEEcCC--CCCCCCHHHHHHHHHcCC--CCCCCCcHHHHHHH
Q 026289 174 EKIISDNEILDK---NKGNIKLVDEL--VPNQISSTRIRDCICRGL--SIKYLTEDKVIDYI 228 (240)
Q Consensus 174 ~~~~~~~~~l~~---~~~~i~~l~~~--~~~~iSST~IR~~l~~g~--~i~~lvp~~V~~yI 228 (240)
.. +...+.. .+-.+.+++.. ....||||.||++|.+|+ ....|+|++|++++
T Consensus 239 ~G---~~~l~~~~~~~gf~v~~v~~~~~~g~~ISST~IR~~l~~G~v~~A~~lLp~~~~~~~ 297 (297)
T cd02169 239 IY---NQTMQEELLSPAIEVIEIERKKYDGQPISASTVRQLLKEGNLEEIAKLVPETTYEFL 297 (297)
T ss_pred hh---HHHHHHhcccCCCEEEEecccccCCcEEcHHHHHHHHHcCCHHHHHHhCCHHhHhhC
Confidence 00 0011211 12234455421 235799999999999997 68899999999874
No 26
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.65 E-value=2.9e-15 Score=134.72 Aligned_cols=177 Identities=17% Similarity=0.221 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCc-----eee
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF-----IMV 94 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~-----i~v 94 (240)
+.+++ .=||||+|+||+.+++.|.+.++.|+++++ |... ++|...++++.|++|+++++++.+. +.+
T Consensus 184 ~~Vva--fqt~nPiHr~H~~l~~~a~e~l~~d~lll~-----P~~g-~~k~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~ 255 (383)
T TIGR00339 184 DTVVA--FQTRNPMHRAHEELTKRAARSLPNAGVLVH-----PLVG-LTKPGDIPAEVRMRAYEVLKEGYPNPERVMLTF 255 (383)
T ss_pred CeEEE--eccCCCCchHHHHHHHHHHHHcCCCeEEEE-----eCCC-CCCCCCCCHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 45666 388999999999999999998877888754 4444 4677899999999999999999765 788
Q ss_pred ccccccCCCccChHHHHHH--HHHHHhhhccCCCCCceEEEEEcchhhhhcCC--C-CCCChhhHHHHhhcc------cE
Q 026289 95 DPWEANQSGYQRTLTVLSR--VKNFLIEAGLISTESLKVMLVCGSDLLESFAI--P-GFWMPEQVWTICRNF------GV 163 (240)
Q Consensus 95 ~~~E~~~~~~~~t~~tl~~--l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~--~-~~w~~~~~~~l~~~~------~~ 163 (240)
.++|....|++ +++.+ +++.| + +. +||+|.|.+.--.. . -.|..++.+++++.+ .+
T Consensus 256 ~~~em~~agpr---eall~Aiir~ny------G---~t-h~IiG~Dhag~g~~~~~~~~Y~~~~aq~i~~~~~~~l~I~~ 322 (383)
T TIGR00339 256 LPLAMRYAGPR---EAIWHAIIRKNY------G---AT-HFIVGRDHAGPGSNSKGQDFYGPYDAQELFEKYKAELGIKI 322 (383)
T ss_pred cchHhhcCCcH---HHHHHHHHHHHC------C---CC-EEEECCCCCCCCCCCccccCCCcchHHHHHHhCccccCceE
Confidence 99999888887 88888 88888 3 23 99999998765410 0 024445567887543 12
Q ss_pred EEEeCCCCChhhhhhchHHhhhcCCCEEEEcC---C--CCCCCCHHHHHHHHHcCCCC-CCCCcHHHHHHHH
Q 026289 164 ICIRREGQDVEKIISDNEILDKNKGNIKLVDE---L--VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIR 229 (240)
Q Consensus 164 vv~~R~~~~~~~~~~~~~~l~~~~~~i~~l~~---~--~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~yI~ 229 (240)
+.+.---+.. + ...+...+. . ....+|+|.||++++.|..+ ..++.++|.+-+.
T Consensus 323 v~~~~~~Yc~-----------~-c~~~~~~~~cph~~~~~~~~sgt~ir~~L~~G~~pP~~f~rpeV~~~L~ 382 (383)
T TIGR00339 323 VPFEHVAYCP-----------D-EDEYAPADQAGHTNLRTLNISGTKLRGMLREGVFPPEWFSRPEVVKILR 382 (383)
T ss_pred EecceeEEEc-----------c-cCcEeecccCCCCccceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHh
Confidence 2111110100 0 012222221 1 23589999999999999764 4589999998775
No 27
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.65 E-value=2.6e-16 Score=139.35 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~ 100 (240)
.+||++||||||+|+||+.|++.|.+.++.+.+.| + + .++..+++++|++|++.++++.+++.|....
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~d~~~v~v-----~--~---~~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~-- 206 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQCDWLHLFV-----V--K---EDASLFSYDERFALVKQGIQDLSNVTVHNGS-- 206 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHCCEEEEEE-----E--e---CCCCCCCHHHHHHHHHHHhcCCCCEEEEecC--
Confidence 47999999999999999999999999884333332 2 1 2457899999999999999999988775432
Q ss_pred CCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhc--ccEEEEeCC--CCChhhh
Q 026289 101 QSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRRE--GQDVEKI 176 (240)
Q Consensus 101 ~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~--~~~vv~~R~--~~~~~~~ 176 (240)
.|++.. .+| |. ||+-..|.+...+. .-+ -.|++. ++.+-++|. |.++...
T Consensus 207 ----~~~is~-----atf------p~-----yflk~~~~~~~~~~-----~ld-~~~f~~~ia~~l~i~~r~vg~ep~~~ 260 (332)
T TIGR00124 207 ----AYIISR-----ATF------PA-----YFLKEQDVADDCYT-----EID-LKLFRYKIAPALGITHRFVGTEPLCP 260 (332)
T ss_pred ----Cceecc-----ccc------hh-----hhcCChhHHHHHHH-----HHH-HHHHHHhchHhhCCccceeCCCCCCH
Confidence 132211 233 32 66666655544321 000 123322 232323332 3222111
Q ss_pred hhc--hHHhh----h-c-CCCEE--EEcC--CCCCCCCHHHHHHHHHcCC--CCCCCCcHHHHHHHHHCC
Q 026289 177 ISD--NEILD----K-N-KGNIK--LVDE--LVPNQISSTRIRDCICRGL--SIKYLTEDKVIDYIRESR 232 (240)
Q Consensus 177 ~~~--~~~l~----~-~-~~~i~--~l~~--~~~~~iSST~IR~~l~~g~--~i~~lvp~~V~~yI~~~~ 232 (240)
... +..+. . . ...|. .+.. .....+|+|.||+++.+|. .+..+||+.+.+|++++.
T Consensus 261 ~t~~yn~~m~~~~~~~~~~~~I~~~~I~R~~~~~~~~SASaIR~~L~~~~~~~i~~~VP~~t~~~l~~~~ 330 (332)
T TIGR00124 261 VTALYNQKMKYWLEEPNDAPPIEVVEIQRKLAAGGPISASTVRELLAKGDWAAWAKLVPETTLHFLQNLL 330 (332)
T ss_pred hHHHHHHHHHHhhhccCCCCCcEEEEEeeecCCCCeeCHHHHHHHHHcCCHHHHHHhCCHHHHHHHHHhh
Confidence 000 11121 1 1 12333 3331 1134699999999998874 689999999999998764
No 28
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.65 E-value=2.2e-15 Score=122.82 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeec
Q 026289 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (240)
Q Consensus 28 GSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~ 95 (240)
=+|||+|+||+.+++.|.+.++.+.++ +.|+ +++.+++++|++|+++|+++.+++.|-
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~-----v~p~-----~~~~~s~e~R~~Mi~~a~~~~~~v~v~ 63 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAECDWVHLF-----VVSE-----DASLFSFDERFALVKKGTKDLDNVTVH 63 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCceEEE-----EEeC-----CCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 379999999999999999998655554 4454 345789999999999999998877654
No 29
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.57 E-value=4e-14 Score=110.26 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-cccc-CCCCCHHHHHHHHHHHHhcCCceeecccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKK-RGLISAEHRINLCNLACKSSDFIMVDPWE 98 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E 98 (240)
+++++++|+|||+|.||+.+++.|.+.. +.++++ +.+... .+.| ...++.++|++|++. +...+.+.+.
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~---v~~~~~~~~~~~~~~~~~~eR~~~l~~-~~~vd~v~~~--- 71 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVG---VARDETVAKIKRRPILPEEQRAEVVEA-LKYVDEVILG--- 71 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEE---ECCcHHHHhcCCCCCCCHHHHHHHHHc-CCCcCEEEEC---
Confidence 3689999999999999999999999865 444433 222211 1122 368899999999996 5443433332
Q ss_pred ccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhhhhh
Q 026289 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEKIIS 178 (240)
Q Consensus 99 ~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~~~~ 178 (240)
. +.+.++.+.+.+ |+ ++++|.|...... .|.+. +.+.+....+++.|
T Consensus 72 --~-----~~~~~~~l~~~~------~~-----~vv~G~d~~fg~~---~~~~~--~~l~~~g~~~~~~~---------- 118 (136)
T cd02170 72 --H-----PWSYFKPLEELK------PD-----VIVLGDDQKNGVD---EEEVY--EELKKRGKVIEVPR---------- 118 (136)
T ss_pred --C-----CCCHhHHHHHHC------CC-----EEEECCCCCCCCc---chhHH--HHHHHCCeEEEECC----------
Confidence 1 223444454433 42 8999999865443 46442 34443333332222
Q ss_pred chHHhhhcCCCEEEEcCCCCCCCCHHHHHHHHHc
Q 026289 179 DNEILDKNKGNIKLVDELVPNQISSTRIRDCICR 212 (240)
Q Consensus 179 ~~~~l~~~~~~i~~l~~~~~~~iSST~IR~~l~~ 212 (240)
.....+|||.||+++.+
T Consensus 119 -----------------~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 119 -----------------KKTEGISSSDIIKRILE 135 (136)
T ss_pred -----------------CCCCCCcHHHHHHHHHh
Confidence 01347999999999853
No 30
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.55 E-value=1e-14 Score=129.33 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=59.2
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccc--cCCCCCHHHHHHHHHHHHhcCCc-eeecccc
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDF-IMVDPWE 98 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~--k~~~~~~~~R~~Ml~~a~~~~~~-i~v~~~E 98 (240)
++|||||||||+|.||+.+++.|.+.+ |++++++ +..+++ ++..++.++|++|+++++++.+. +.|++++
T Consensus 2 ~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~-----~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 2 TIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVV-----GSLFYDSKAKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred cEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEE-----CCCCcCccCCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 589999999999999999999999985 8887653 333333 34689999999999999999999 9988877
No 31
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.53 E-value=1e-13 Score=125.98 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=61.1
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCc----cccCCCCCHHHHHHHHHHHHhcCCce
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA----YKKRGLISAEHRINLCNLACKSSDFI 92 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~----~~k~~~~~~~~R~~Ml~~a~~~~~~i 92 (240)
+.+.+.++|++|+|||+|+||+.+++.|.+.+ |+++++.+...|.... ..++..++.++|++|++.++++.+++
T Consensus 48 ~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v 125 (399)
T PRK08099 48 PRQMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNI 125 (399)
T ss_pred hhhcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCE
Confidence 44556799999999999999999999999985 6777663332221100 01246899999999999999998888
Q ss_pred eeccccc
Q 026289 93 MVDPWEA 99 (240)
Q Consensus 93 ~v~~~E~ 99 (240)
.|..++.
T Consensus 126 ~v~~~~~ 132 (399)
T PRK08099 126 KIHAFNE 132 (399)
T ss_pred EEEecCC
Confidence 8876554
No 32
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.52 E-value=1.4e-13 Score=109.28 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=46.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC-Ccccc-CCCCCHHHHHHHHHHHHhc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK-RGLISAEHRINLCNLACKS 88 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~-~~~~k-~~~~~~~~R~~Ml~~a~~~ 88 (240)
.+++||||||+|.||+.+++.|.+.. ++++++ +.... .+++| ....++++|++|++.++++
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A~~~~--d~livg---i~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKAFELG--KRVTIG---LTSDEFAKSYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHHHHcC--CEEEEE---EcCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999998863 566542 23221 12334 3578999999999998876
No 33
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.44 E-value=1.3e-12 Score=104.52 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-ccccCCCCCHHHHHHHHHHHHhcC
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKRGLISAEHRINLCNLACKSS 89 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k~~~~~~~~R~~Ml~~a~~~~ 89 (240)
.+..|+|-|.|.|+|.||+.+++.|++.. |+++++ +.+.+ +...++++|+.+|+.|++.++.+.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~----iGSa~~~~t~~nPfTagER~~mi~~~L~~~ 66 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIV----IGSAQESHTLKNPFTAGERIPMIRDRLREA 66 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEE----EccCcccccccCCCCccchhHHHHHHHHhc
Confidence 46789999999999999999999999974 788765 33333 334568999999999999998753
No 34
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.43 E-value=2.6e-13 Score=92.28 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCC--CCccccC-CCCCHHHHHHHHHHHHhcC
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV--NDAYKKR-GLISAEHRINLCNLACKSS 89 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~--~~~~~k~-~~~~~~~R~~Ml~~a~~~~ 89 (240)
|++++|+|||+|.||+.+++.|.+..+ .+.+ ++++ ..++.|+ ..++.++|.+|++.+....
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~--~~vv----~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 64 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD--ELIV----GVGSDQFVNPLKGEPVFSLEERLEMLKALKYVD 64 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC--EEEE----EECchHhccccCCCCCCCHHHHHHHHHHhcccc
Confidence 589999999999999999999998764 3322 1222 2333454 6899999999999887643
No 35
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.34 E-value=1.4e-11 Score=94.93 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHH
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a 85 (240)
+++++++|+|||+|.||+.+++.|.+.. +++.++. .+-+......++...|.++|++|++..
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v-~~d~~~~~~~~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAV-STDEFNAGKGKKAVIPYEQRAEILESI 62 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEE-eccHhHHhcCCCCCCCHHHHHHHHHcC
Confidence 3578899999999999999999998864 4443321 111111111223578999999999764
No 36
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.31 E-value=3e-11 Score=98.51 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCc---ccc--CCCCCHHHHHHHHHHHHhcCCceeeccc
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA---YKK--RGLISAEHRINLCNLACKSSDFIMVDPW 97 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~---~~k--~~~~~~~~R~~Ml~~a~~~~~~i~v~~~ 97 (240)
.+.-|+|||+|.||+.+++.|.+..+..++..+...+.|.... +.+ ....+.++|++|++.. . .+.+.+-++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l-~-vd~v~~~~f 78 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL-G-VDYLLVLPF 78 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc-C-CCEEEEeCC
Confidence 3566999999999999999999875422221111124443211 122 2478999999999974 2 444544443
No 37
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=99.21 E-value=2e-11 Score=97.38 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=91.6
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeeccccccCCCccChH
Q 026289 29 SFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQRTL 108 (240)
Q Consensus 29 SFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~~~~~~~~t~ 108 (240)
.-||+|+||..|++.|.+.+ |.+++ |+-.. .++.+++++|++|++.-+++.+++.|-. +..|.+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~--d~l~v----FVV~e----D~S~Fpf~~R~~LVk~G~~~L~NV~V~~------~g~YiI 70 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKEC--DWLHV----FVVSE----DRSLFPFADRYELVKEGTADLPNVTVHP------GGDYII 70 (182)
T ss_pred cCCCCccHHHHHHHHHHHhC--CEEEE----EEEcc----ccCcCCHHHHHHHHHHHhCcCCCEEEEc------CCCeee
Confidence 46999999999999999977 55553 22222 3478999999999999999999887632 212221
Q ss_pred HHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhc--ccEEEEeCC--CCChh-hhhhc-h--
Q 026289 109 TVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN--FGVICIRRE--GQDVE-KIISD-N-- 180 (240)
Q Consensus 109 ~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~--~~~vv~~R~--~~~~~-~~~~~-~-- 180 (240)
.. .+| |. ||+-..+.....+. =-+ -.|+.. +..+-++|. |.+.. ..... +
T Consensus 71 S~-----aTF------Ps-----YFlK~~~~~~~~~~---~lD---~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~ 128 (182)
T PF08218_consen 71 SS-----ATF------PS-----YFLKDEDDVIKAQA---ELD---ATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEA 128 (182)
T ss_pred ec-----ccC------hh-----hhccchhHHHHHHH---HHH---HHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHH
Confidence 11 112 21 44444443333221 000 012211 122222222 22221 11000 1
Q ss_pred --HHhhhcCCCEEEEcCC--CCCCCCHHHHHHHHHcCC--CCCCCCcHHHHHHH
Q 026289 181 --EILDKNKGNIKLVDEL--VPNQISSTRIRDCICRGL--SIKYLTEDKVIDYI 228 (240)
Q Consensus 181 --~~l~~~~~~i~~l~~~--~~~~iSST~IR~~l~~g~--~i~~lvp~~V~~yI 228 (240)
+.|...+-.+..++.. ....||+|.||+++++|+ .++.+||+..++|+
T Consensus 129 M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~VR~~l~~~~~~~i~~lVP~tT~~yl 182 (182)
T PF08218_consen 129 MKEILPPYGIEVVEIPRKEINGEPISASRVRKLLKEGDFEEIKKLVPETTYDYL 182 (182)
T ss_pred HHHhccccCCEEEEEecccCCCcEEcHHHHHHHHHcCCHHHHHHhCCHhhHhhC
Confidence 2233222223334321 246899999999999995 68999999999985
No 38
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.20 E-value=7.5e-11 Score=92.58 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=45.6
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-ccccC---CCCCHHHHHHHHHHHHhcC
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKR---GLISAEHRINLCNLACKSS 89 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k~---~~~~~~~R~~Ml~~a~~~~ 89 (240)
.++||||||+|.||+.+++.|.+..+ ++++++ .+... ...|+ ...++++|++|++.++++.
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vg----vt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSVAFLLAG-EKLIIG----VTSDELLKNKSLKELIEPYEERIANLHEFLVDL 66 (143)
T ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc-CCcEEE----EeCchhcccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999998765 565542 22222 22332 3569999999999999874
No 39
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.18 E-value=6.4e-10 Score=88.01 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=59.0
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-cccc-CCCCCHHHHHHHHHHHHhcCCceeeccccc
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E~ 99 (240)
+..+.+|+|||+|.||+.+++.|.+...-+.+ +|+ +..... ...| +..++.++|.+|++.. ...+.+.+..
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~L-iVg--V~sD~~~~~~k~~pi~~~~eR~~~l~~~-~~Vd~Vi~~~--- 75 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYL-IVG--VHSDEEIHKHKGPPVMTEEERYEAVRHC-KWVDEVVEGA--- 75 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEE-EEE--EecCHHHhhcCCCCcCCHHHHHHHHHhc-CCCCeEEECC---
Confidence 34667999999999999999999876422333 443 322110 0012 3688999999999964 4444443321
Q ss_pred cCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhh
Q 026289 100 NQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 141 (240)
Q Consensus 100 ~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~ 141 (240)
....+.+.++.++ |+ +++.|.|...
T Consensus 76 ---~~~~~~~~i~~~~---------~d-----~vv~G~d~~~ 100 (150)
T cd02174 76 ---PYVTTPEFLDKYK---------CD-----YVAHGDDIYL 100 (150)
T ss_pred ---CCCChHHHHHHhC---------CC-----EEEECCCCCC
Confidence 1124555555432 43 6889987654
No 40
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.07 E-value=3.3e-10 Score=84.27 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=42.5
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc--CCCCCHHHHHHHHHHH
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK--RGLISAEHRINLCNLA 85 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k--~~~~~~~~R~~Ml~~a 85 (240)
++|||+|||+|.||+.+++.|.+.. +.+++. ++.+++.+ ....+.++|++|++.+
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~-----i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVR-----IDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEE-----EcCCCcccccCChHHHHHHHHHHHHH
Confidence 6899999999999999999999876 555533 33333333 3578999999999976
No 41
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.04 E-value=1.1e-09 Score=86.81 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecC-CCCcccc---CCCCCHHHHHHHHHHHHhcCCceeecc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP-VNDAYKK---RGLISAEHRINLCNLACKSSDFIMVDP 96 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p-~~~~~~k---~~~~~~~~R~~Ml~~a~~~~~~i~v~~ 96 (240)
.+|.+++|+|||+|.||+.+++.|.+.. +.+ +|+ +.. ......| ...++.++|++|+ .+++..+.+.+..
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~l-iVg--V~~D~~~~~~K~~~~pi~~~~eR~~~v-~~~~~Vd~V~v~~ 75 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG--DYL-IVG--VHDDQTVNEYKGSNYPIMNLHERVLSV-LACRYVDEVVIGA 75 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC--CEE-EEE--EeCcHHHHhhcCCCCCCCCHHHHHHHH-HhcCCCCEEEECC
Confidence 3688999999999999999999998753 444 333 221 1111223 2588999999999 5677766655532
Q ss_pred ccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhh
Q 026289 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLE 141 (240)
Q Consensus 97 ~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~ 141 (240)
.+ ..+.+.++. ++ |+ +++.|.|...
T Consensus 76 ~~------~~~~~~~~~----~~-----~d-----~vv~G~d~~~ 100 (152)
T cd02173 76 PY------VITKELIEH----FK-----ID-----VVVHGKTEET 100 (152)
T ss_pred CC------cchHHHHHH----hC-----CC-----EEEECCCCcc
Confidence 11 123444443 32 43 7889988763
No 42
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.93 E-value=4.6e-09 Score=80.57 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=37.4
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCC--CCccccCCCCCHHHHHHHHHH
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV--NDAYKKRGLISAEHRINLCNL 84 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~--~~~~~k~~~~~~~~R~~Ml~~ 84 (240)
+..|+||++|.||+.+++.|.+.. +.+ +|+ +.+. ...+.+....+.++|.++++.
T Consensus 2 ~~~G~FDg~H~GH~~~l~~a~~~~--~~~-iv~--v~~d~~~~~~~~~~i~~~eeR~~~l~~ 58 (125)
T TIGR01518 2 LTYGTFDLLHWGHINLLERAKQLG--DYL-IVA--LSTDEFNLQKQKKAYHSYEHRKLILET 58 (125)
T ss_pred EEcceeCCCCHHHHHHHHHHHHcC--CEE-EEE--EechHHHhhcCCCCCCCHHHHHHHHHc
Confidence 457999999999999999998754 333 332 2321 111112356899999988875
No 43
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.85 E-value=5.4e-08 Score=78.74 Aligned_cols=71 Identities=21% Similarity=0.188 Sum_probs=48.4
Q ss_pred ccccCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC---CCCCHHHHHHHHHHHHhc
Q 026289 14 SKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR---GLISAEHRINLCNLACKS 88 (240)
Q Consensus 14 ~~~~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~---~~~~~~~R~~Ml~~a~~~ 88 (240)
-+.+.......+.||+||.+|.||..|+..|.+... +. .+|+ |.+..-...|+ .+.++++|.++++..+..
T Consensus 12 ~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~-~~-vvIg--ft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~ 85 (177)
T PLN02388 12 KLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELAR-DR-IVIG--VCDGPMLSKKQFAELIQPIEERMHNVEEYIKS 85 (177)
T ss_pred cCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhh-cC-EEEe--cCCChhhcccCCCcccCCHHHHHHHHHHHHHH
Confidence 344444456777899999999999999999987642 23 3443 44432211121 367999999999988875
No 44
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.84 E-value=3.3e-08 Score=84.57 Aligned_cols=178 Identities=14% Similarity=0.086 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceee---cc
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV---DP 96 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v---~~ 96 (240)
.++||-.-=.-||+|+||..++++|.+.+ |.+++ |+.+. ..+.+|+++|++|++.-+++.+++.+ ++
T Consensus 144 gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHL----FvV~e----D~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgsd 213 (352)
T COG3053 144 GKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHL----FVVKE----DSSLFPYEDRLDLVKKGTADLPNVTVHSGSD 213 (352)
T ss_pred CCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEE----EEEec----ccccCCHHHHHHHHHHhhccCCceEEecCCC
Confidence 45777777789999999999999999877 66553 23222 34689999999999999999988765 34
Q ss_pred ccccCCC-ccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcccEEEEeCCCCChhh
Q 026289 97 WEANQSG-YQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFGVICIRREGQDVEK 175 (240)
Q Consensus 97 ~E~~~~~-~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~~vv~~R~~~~~~~ 175 (240)
|=+.+.. |.|.+.-=...-+.+ +..++.--++| +..-+.-.+=.|-.-+......
T Consensus 214 YiISrATFP~YFiKeq~vv~~s~--------------------t~iDl~iFr~~----iA~aLgIThRfVG~EP~c~vT~ 269 (352)
T COG3053 214 YIISRATFPAYFIKEQSVVNDSQ--------------------TEIDLKIFRKY----IAPALGITHRFVGTEPFCRVTA 269 (352)
T ss_pred eEEEecccchhhhhhHHHHHHHH--------------------HHHHHHHHHHH----HHHHhCcceeeecCCCCcHHHH
Confidence 5444432 334432100000000 00011000012 1111111111111111111100
Q ss_pred -hhhc-hHHhhhc---CCCEEEEc--CC--CCCCCCHHHHHHHHHcCC--CCCCCCcHHHHHHHHHC
Q 026289 176 -IISD-NEILDKN---KGNIKLVD--EL--VPNQISSTRIRDCICRGL--SIKYLTEDKVIDYIRES 231 (240)
Q Consensus 176 -~~~~-~~~l~~~---~~~i~~l~--~~--~~~~iSST~IR~~l~~g~--~i~~lvp~~V~~yI~~~ 231 (240)
+-.. ...|.+- ...|.++. .. ....||+|.||+.++++. .+..+||+..++|+.+|
T Consensus 270 ~YNq~M~~~L~~~~~~~p~I~vvei~Rk~~~~~~ISAS~VR~~l~~~~~~~ia~lVP~tTl~Yl~~~ 336 (352)
T COG3053 270 IYNQQMRYWLEDPTISAPPIEVVEIERKKYQEMPISASRVRQLLAKNDLEAIANLVPATTLNYLQQH 336 (352)
T ss_pred HHHHHHHHHHhccCCCCCceEEEEeehhhhcCCcccHHHHHHHHHhCCHHHHHhhCcHHHHHHHHHH
Confidence 0000 1223321 12344332 11 247899999999999874 58899999999999876
No 45
>PRK13671 hypothetical protein; Provisional
Probab=98.80 E-value=6.3e-09 Score=90.67 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=48.1
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC--CCCCHHHHHHHHHHH
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR--GLISAEHRINLCNLA 85 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~--~~~~~~~R~~Ml~~a 85 (240)
++|| --+|||+|+||+.+++.|++.++.|.+++ +|+.++++|. ..++..+|++|+...
T Consensus 2 ~~GI-IaeFNP~H~GHl~~~~~a~~~~~~d~vi~-----vpSg~~~qrg~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 2 AIGI-IAEYNPFHNGHIYQINYIKNKFPNEKIIV-----ILSGKYTQRGEIAVASFEKRKKIALKY 61 (298)
T ss_pred ceeE-EeeeCCccHHHHHHHHHHHHhcCCCEEEE-----EECcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 4566 57999999999999999999998888764 4677777775 355999999999875
No 46
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.78 E-value=1.5e-07 Score=82.77 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=44.9
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc---cc--CCCCCHHHHHHHHHHHHhcCCceeecc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KK--RGLISAEHRINLCNLACKSSDFIMVDP 96 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~---~k--~~~~~~~~R~~Ml~~a~~~~~~i~v~~ 96 (240)
.++.-|.||-+|.||+.+++.|.+......+..+...|.|..... .+ ..+.+.++|+++++.. +.+.+.+-+
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~--gVD~~~~~~ 91 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL--GVDYVLVLP 91 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc--CCCEEEEec
Confidence 566679999999999999999998654333221111244432211 11 2477999999999764 244444433
No 47
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.77 E-value=1e-07 Score=74.90 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc-cc---CCCCCHHHHHHHHHHH
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-KK---RGLISAEHRINLCNLA 85 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~-~k---~~~~~~~~R~~Ml~~a 85 (240)
..+++..|+||-+|.||+.+++.|.+.. +.+ ++. +.+...+. .| ....+.++|+++++..
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~~-~v~--v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG--DRL-VVG--VNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC--Ccc-EEE--EECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 3567778999999999999999998864 333 232 33322211 12 2478999999998864
No 48
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=98.75 E-value=8.7e-08 Score=86.91 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=65.1
Q ss_pred ccCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC-CccccC-CCCCHHHHHHHHHHHHhcCCcee
Q 026289 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKKR-GLISAEHRINLCNLACKSSDFIM 93 (240)
Q Consensus 16 ~~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~-~~~~k~-~~~~~~~R~~Ml~~a~~~~~~i~ 93 (240)
+++++....+++|+|||+|.||+.++++|.+.. |.+ +|+ +.... ....|. ...+.++|++|++. ++..+.+.
T Consensus 48 ~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~L-IVG--V~SDe~i~~~Kg~PV~~~eER~~~v~a-lk~VD~Vv 121 (418)
T PLN02406 48 KKKKKPVRVYMDGCFDMMHYGHANALRQARALG--DEL-VVG--VVSDEEIIANKGPPVTPMHERMIMVSG-VKWVDEVI 121 (418)
T ss_pred ccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEE-EEE--EecChhhhccCCCCcCCHHHHHHHHHh-cCCCceEE
Confidence 444455677889999999999999999998853 444 443 22211 112343 68899999999987 55544443
Q ss_pred eccccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhh
Q 026289 94 VDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 140 (240)
Q Consensus 94 v~~~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l 140 (240)
+.. ....+.+++..+-+++. |+ +++.|.|.-
T Consensus 122 ~~a------py~~~~d~~~~li~~~~-----~D-----~vVhGdD~~ 152 (418)
T PLN02406 122 PDA------PYAITEEFMNKLFNEYN-----ID-----YIIHGDDPC 152 (418)
T ss_pred eCC------ccccchHHHHHHHHHhC-----CC-----EEEECCCcc
Confidence 321 11234455554434553 44 799999843
No 49
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.74 E-value=5.4e-08 Score=87.07 Aligned_cols=95 Identities=18% Similarity=0.204 Sum_probs=62.5
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC-CccccC---CCCCHHHHHHHHHHHHhcCCceeec
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKKR---GLISAEHRINLCNLACKSSDFIMVD 95 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~-~~~~k~---~~~~~~~R~~Ml~~a~~~~~~i~v~ 95 (240)
..+|+++.|+|||+|.||+.+++.|.+.. |.+ +|+ +.... .+..|. ..++.++|.+++. +++..+.+.+.
T Consensus 191 ~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~L-IVg--V~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-a~~~Vd~Vvi~ 264 (353)
T PTZ00308 191 GDRIVYVDGSFDLFHIGHIRVLQKARELG--DYL-IVG--VHEDQVVNEQKGSNYPIMNLNERVLGVL-SCRYVDEVVIG 264 (353)
T ss_pred CCeEEEECCccCCCCHHHHHHHHHHHHhC--CEE-EEE--EcchHHhHhhcCCCCCCCCHHHHHHHHH-hhCCCCeEEEc
Confidence 35899999999999999999999998753 444 443 32111 122332 5889999999995 77765655553
Q ss_pred cccccCCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcchhh
Q 026289 96 PWEANQSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGSDLL 140 (240)
Q Consensus 96 ~~E~~~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~D~l 140 (240)
..+ ..+.+.++. ++ |+ +++.|.|..
T Consensus 265 ~~~------~~~~~~i~~----~~-----~d-----~vv~G~d~~ 289 (353)
T PTZ00308 265 APF------DVTKEVIDS----LH-----IN-----VVVGGKFSD 289 (353)
T ss_pred CCC------CChHHHHHH----hC-----CC-----EEEECCCCc
Confidence 211 234444444 32 43 788998764
No 50
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.74 E-value=9.9e-08 Score=83.23 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=42.8
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCC--eEEEeeeecCCCCccc---c-CCCCCHHHHHHHHHHHHhcCCceeeccc
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEG--YCVIGGYMSPVNDAYK---K-RGLISAEHRINLCNLACKSSDFIMVDPW 97 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~--~~vv~~~~~p~~~~~~---k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~ 97 (240)
+.-|.||.+|.||..+++.|.+.....+ ..|+ .|.|...... + ..+.+.++|+++++.. +.+.+.+-++
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~--tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~--Gvd~~~~~~F 76 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVL--LFEPHPSEQFNWLTAPALTPLEDKARQLQIK--GVEQLLVVVF 76 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEE--EeCCChHHHhCccCCCCCCCHHHHHHHHHHc--CCCEEEEeCC
Confidence 4459999999999999999987543222 1122 2555322111 1 1277889999998863 3444444443
No 51
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=98.59 E-value=2.7e-06 Score=71.06 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=102.8
Q ss_pred hcccccccCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcC
Q 026289 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (240)
Q Consensus 10 ~~~~~~~~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~ 89 (240)
++...+..+-++++|+.. -||+|.||..|++.|++.+ .+.+.+.+ .+- +.|.+.++.+-|++-.+..++..
T Consensus 11 ~r~~~~~~gw~~Vvafqt--rnPlHraHe~l~~~a~e~~-~~~lll~p-lvG-----~~k~~d~~~~~r~~~~~~~~~~y 81 (215)
T PF01747_consen 11 TRELFKEKGWRRVVAFQT--RNPLHRAHEYLMRRALEKA-GDGLLLHP-LVG-----PTKPGDIPYEVRVRCYEALIDNY 81 (215)
T ss_dssp HHHHHHHTT-SSEEEEEE--SS---HHHHHHHHHHHHHH-TSEEEEEE-BES-----B-STTSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCeEEEEEe--CCCCCHHHHHHHHHHHHHh-cCcEEEEe-ccC-----CCCcCCCCHHHHHHHHHHHHHHh
Confidence 333444555566788866 9999999999999999987 46665443 111 24667899999999999999883
Q ss_pred ---Cceeecccccc--CCCccChHHHHHH-HHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhc---
Q 026289 90 ---DFIMVDPWEAN--QSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRN--- 160 (240)
Q Consensus 90 ---~~i~v~~~E~~--~~~~~~t~~tl~~-l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~--- 160 (240)
+.+.++.+... -.|+.- ..+.. +++.|+ + -.||+|-|...--. .|..++.+++++.
T Consensus 82 ~p~~~v~l~~lp~~mr~aGPrE--allhAiirkN~G---------c-Th~IvGrdhAg~g~---~Y~~~~a~~i~~~~~~ 146 (215)
T PF01747_consen 82 FPKNRVLLSPLPLPMRYAGPRE--ALLHAIIRKNYG---------C-THFIVGRDHAGVGD---FYDPYEAQEIFDEYAG 146 (215)
T ss_dssp SSTTGEEEEBBESB---SHHHH--HHHHHHHHHHTT-----------SEEEE-TTTT-SCB---SS-TTHHHHHHHHHHH
T ss_pred CCCCcEEEeccCchhcccCcHH--HHHHHHHHHHCC---------C-ceEEeCCcCCCccc---cCCccHHHHHHHcCcc
Confidence 35666655543 233321 12332 334442 2 36889999886654 2444556777764
Q ss_pred ---ccEEEEeCCCCChhhhhhchHHhhhcCCCEEEEcC---CC--CCCCCHHHHHHHHHcCCCC-CCCCcHHHHHHHHH
Q 026289 161 ---FGVICIRREGQDVEKIISDNEILDKNKGNIKLVDE---LV--PNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 230 (240)
Q Consensus 161 ---~~~vv~~R~~~~~~~~~~~~~~l~~~~~~i~~l~~---~~--~~~iSST~IR~~l~~g~~i-~~lvp~~V~~yI~~ 230 (240)
..++.+..-.+... .+.+...+. .. ...||+|.||+++++|..+ ..++.|+|++-|.+
T Consensus 147 el~I~~v~~~~~~Yc~~------------~~~~~~~~~cp~~~~~~~~iSgt~ir~~L~~G~~pP~~f~rpeV~~~L~~ 213 (215)
T PF01747_consen 147 ELGIEPVPFPEMVYCPK------------CGQYVSAKTCPHGKHHHISISGTEIRELLREGEEPPEWFMRPEVAAILRR 213 (215)
T ss_dssp HCTSEEEE---EEEETT------------TTEEEECGGSSTTTGGGEE--HHHHHHHHHTT----TTTS-HHHHHHHHH
T ss_pred cCCceEEecceEEEEcC------------CCeEeeccccCCCCCcceeeCHHHHHHHHHCcCCCCCCcCcHHHHHHHHH
Confidence 22333222111100 012222221 11 1479999999999999865 45899999998875
No 52
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.58 E-value=2.4e-06 Score=67.21 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-cccc-CCCCCHHHHHHHHHH
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKK-RGLISAEHRINLCNL 84 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k-~~~~~~~~R~~Ml~~ 84 (240)
..+++..|+||++|.||+.+++.|.+.. +.+ ++. +.|... .+.| +.+.+.++|.++++.
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~-vv~--~~~d~~~~~~~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLG--DIL-VVS--LTSDRYVNKGPGRPIFPEDLRAEVLAA 64 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhC--CeE-EEE--EeChHHhccCCCCCCCCHHHHHHHHHc
Confidence 3567888999999999999999998864 333 332 444221 1122 357899999999864
No 53
>PRK07143 hypothetical protein; Provisional
Probab=98.56 E-value=1.2e-06 Score=75.97 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=41.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecC-CCCcccc-CCCCCHHHHHHHHHHHHhcCCceeeccc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP-VNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPW 97 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p-~~~~~~k-~~~~~~~~R~~Ml~~a~~~~~~i~v~~~ 97 (240)
+++.-|.||-+|.||..|++.|.+. + ....|+ .+.+ ......+ ..+.+.++|+++++.. +.+.+.+-++
T Consensus 17 ~vvaiG~FDGvH~GHq~Ll~~a~~~-~-~~~vV~--tF~~P~~~~~~~~~~l~~~~er~~~l~~~--Gvd~~~~~~F 87 (279)
T PRK07143 17 PTFVLGGFESFHLGHLELFKKAKES-N-DEIVIV--IFKNPENLPKNTNKKFSDLNSRLQTLANL--GFKNIILLDF 87 (279)
T ss_pred eEEEEccCCcCCHHHHHHHHHHHHC-C-CcEEEE--EeCChHHhcccCcccCCCHHHHHHHHHHC--CCCEEEEeCC
Confidence 3455599999999999999999863 2 222222 1321 1100011 1377889999998752 3344544444
No 54
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=98.48 E-value=6e-06 Score=73.08 Aligned_cols=173 Identities=21% Similarity=0.215 Sum_probs=104.7
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCC---c--eeeccccc
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD---F--IMVDPWEA 99 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~---~--i~v~~~E~ 99 (240)
+---|+||+|+||-.|.+.|++.. |++.+.+ ++. ..|.+.++++.|++-.+..++..- . +.+-.+..
T Consensus 187 vafQTRNp~HraHEyl~K~Al~~v--dgllv~p--lVG----~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~aM 258 (397)
T COG2046 187 VAFQTRNPPHRAHEYLQKRALEKV--DGLLVHP--LVG----ATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAAM 258 (397)
T ss_pred EEEecCCCchHHHHHHHHHHHHhc--CcEEEEe--eec----cccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHHh
Confidence 334899999999999999999876 6654433 221 135678999999999999998742 2 33444544
Q ss_pred cCCCccChHHHHHH-HHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhccc----EEEEe-CCCCCh
Q 026289 100 NQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFG----VICIR-REGQDV 173 (240)
Q Consensus 100 ~~~~~~~t~~tl~~-l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~----~vv~~-R~~~~~ 173 (240)
+-.|+.-. .+-. +++.|+ ---||+|-|...--. .|..++.++|++.+. +.++. |...
T Consensus 259 RyagPrEa--~~HaIIRkNyG----------cTHfIVGRDHAGvG~---yYg~Y~aq~if~~f~~eLgI~p~~f~e~~-- 321 (397)
T COG2046 259 RYAGPREA--LLHAIIRKNYG----------CTHFIVGRDHAGVGD---YYGPYDAQEIFDEFSPELGITPVFFEEFF-- 321 (397)
T ss_pred hhcCcHHH--HHHHHHHhhcC----------CeeeeecCCCCCccc---cCCcccHHHHHHhcccccCcEEEecccee--
Confidence 44454321 1222 233442 246999999886654 233455678877543 22111 1100
Q ss_pred hhhhhchHHhhhcCCCEE---EEcCC--CCCCCCHHHHHHHHHcCCC-CCCCCcHHHHHHHHHC
Q 026289 174 EKIISDNEILDKNKGNIK---LVDEL--VPNQISSTRIRDCICRGLS-IKYLTEDKVIDYIRES 231 (240)
Q Consensus 174 ~~~~~~~~~l~~~~~~i~---~l~~~--~~~~iSST~IR~~l~~g~~-i~~lvp~~V~~yI~~~ 231 (240)
+..+. +.+. ..+.. ....+|+|.+|+.++.|.. ...+.=|+|.+-|.+.
T Consensus 322 --------YC~~c-~~~~~~~~cph~~~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~ 376 (397)
T COG2046 322 --------YCPKC-GQMVSTKTCPHGDEHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKS 376 (397)
T ss_pred --------ecccc-cCCcccccCCCCCcceEEEccHHHHHHHHcCCCCCcccccHHHHHHHHHh
Confidence 00000 1111 11111 1357999999999999964 5568889999988764
No 55
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.46 E-value=5.9e-07 Score=79.17 Aligned_cols=61 Identities=23% Similarity=0.191 Sum_probs=41.7
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCc-cccCCCCCHHHHHHHHHHHHhc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA-YKKRGLISAEHRINLCNLACKS 88 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~-~~k~~~~~~~~R~~Ml~~a~~~ 88 (240)
+.+.||+||.+|.||+.+++.|.+. + +.+ +|+ +....-. ..|+...|+++|+++++..++.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~-g-d~L-iVg--vt~D~~~~~~k~~~~~~e~R~~~v~~fl~~ 63 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIET-G-DEV-VIG--LTSDEYVRKNKVYPIPYEDRKRKLENFIKK 63 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHc-C-CEE-EEE--EccHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999763 3 444 333 2221111 1223349999999999987743
No 56
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.31 E-value=9.2e-06 Score=72.85 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=41.7
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-ccccC-CCCCHHHHHHHHHH
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKR-GLISAEHRINLCNL 84 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k~-~~~~~~~R~~Ml~~ 84 (240)
..++.+..|.||-+|.||+.++++|.+.. +.+. ++ +.|... ...|. ...+.++|+++++.
T Consensus 10 ~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Li-vg--v~~d~~i~~~K~~pi~~~eeR~~~l~~ 71 (353)
T PTZ00308 10 GTIRVWVDGCFDMLHFGHANALRQARALG--DELF-VG--CHSDEEIMRNKGPPVMHQEERYEALRA 71 (353)
T ss_pred CcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEE-EE--eCCHHHHhhcCCCCCCCHHHHHHHHHh
Confidence 34677789999999999999999998864 3332 22 232111 11232 47899999999885
No 57
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=98.31 E-value=3.1e-05 Score=69.45 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCC---ceeecc
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD---FIMVDP 96 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~---~i~v~~ 96 (240)
+.++++ =+-||+|+||..+++.|++.++.+.+.+. |.- ...|.+.++.+-|++-.+.+++..+ .+.+..
T Consensus 157 ~~Vvaf--qtrnP~HraHe~l~~~a~~~~~~~~lll~-----plv-G~~k~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~ 228 (353)
T cd00517 157 RRVVAF--QTRNPMHRAHEELMKRAAEKLLNDGLLLH-----PLV-GWTKPGDVPDEVRMRAYEALLEEYYLPERTVLAI 228 (353)
T ss_pred CeEEEe--ecCCCCchhhHHHHHHHHHHcCCCcEEEE-----ecc-CCCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 356663 78999999999999999997753555433 321 1246678999999999999998854 344444
Q ss_pred ccc--cCCCccChHHHHHH-HHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhccc------EEEEe
Q 026289 97 WEA--NQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNFG------VICIR 167 (240)
Q Consensus 97 ~E~--~~~~~~~t~~tl~~-l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~~------~vv~~ 167 (240)
+.. .-.|+.-. .+.. +++.|+ + -.||+|-|...--..-..|..++.+++++... ++.+.
T Consensus 229 lp~~mryAGPrEa--llhAiirkN~G---------c-ThfIvGrDHAG~g~~~~yY~~y~aq~i~~~~~~~l~I~~v~~~ 296 (353)
T cd00517 229 LPLPMRYAGPREA--LWHAIIRKNYG---------A-THFIVGRDHAGVGHPGDYYGPYDAQEIFKKLAPELGIEPVPFR 296 (353)
T ss_pred ccchhcccCcHHH--HHHHHHHHhCC---------C-CeEEECCCCCCCCCccccCCcchhHHHHHhCcccCCceEEecc
Confidence 433 33454311 2222 334442 2 36899998765431100243445577776541 11111
Q ss_pred CCCCChhhhhhchHHhhhcCCCEEEEcCC----CCCCCCHHHHHHHHHcCCCC-CCCCcHHHHHHHHH
Q 026289 168 REGQDVEKIISDNEILDKNKGNIKLVDEL----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 230 (240)
Q Consensus 168 R~~~~~~~~~~~~~~l~~~~~~i~~l~~~----~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~yI~~ 230 (240)
---+. .+ ...+...+.. ....+|+|.||+.++.|..+ ..++.|+|.+-|.+
T Consensus 297 ~~~Yc-----------~~-c~~~~~~~~cp~~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~~L~~ 352 (353)
T cd00517 297 EAAYC-----------PK-CDGMASEDTCPHGEDFLNISGTKLRKMLREGEKPPEWFMRPEVAKVLRE 352 (353)
T ss_pred eeEEe-----------cC-CCeEEecccCCCCCceeeeCHHHHHHHHHCCCCCCCccCcHHHHHHHhh
Confidence 00000 00 0122222211 14689999999999999764 45899999998875
No 58
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=98.19 E-value=0.00011 Score=66.81 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=107.0
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhc-CC--cee
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS-SD--FIM 93 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~-~~--~i~ 93 (240)
.+-+.++|+ =+-||+|+||..|++.|.+.. |.+. +.|.-- ..|.+.++.+-|++-.+.++++ .| ++.
T Consensus 184 ~gw~~Vvaf--qTrnP~HraHe~l~~~a~e~~--d~ll-----l~plvG-~~k~~di~~~~r~~~~~~~~~~y~p~~~v~ 253 (391)
T PRK04149 184 KGWKTVVAF--QTRNPPHRAHEYLQKCALEIV--DGLL-----LNPLVG-ETKSGDIPAEVRMEAYEALLKNYYPKDRVL 253 (391)
T ss_pred cCCCeEEEe--ecCCCCchHHHHHHHHHHHhc--CeEE-----EecCcC-CCCCCCCCHHHHHHHHHHHHHhcCCCCcEE
Confidence 334456663 569999999999999998865 4443 233221 2466789999999999999985 23 344
Q ss_pred ecccccc--CCCccChHHHHHH-HHHHHhhhccCCCCCceEEEEEcchhhhhcCCCCCCChhhHHHHhhcc-------cE
Q 026289 94 VDPWEAN--QSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAIPGFWMPEQVWTICRNF-------GV 163 (240)
Q Consensus 94 v~~~E~~--~~~~~~t~~tl~~-l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~~~~-------~~ 163 (240)
+..+... -.|+.-. .+.. +++.|+ + -.||+|-|...--. .|..++.++++... .+
T Consensus 254 l~~lp~~mryAGPrEa--~lhAivrkN~G---------c-Th~IvGrDHAG~g~---~Y~~~~aq~i~~~~~~~~l~I~~ 318 (391)
T PRK04149 254 LSVTPAAMRYAGPREA--IFHAIVRKNYG---------C-THFIVGRDHAGVGD---YYGPYDAQEIFDEFTEEELGITP 318 (391)
T ss_pred EEeccchhcccCcHHH--HHHHHHHHhCC---------C-CeEEECCCCCCccc---cCCCchHHHHHHhCCcccCCceE
Confidence 5544432 3454311 2222 334442 2 36899999875543 24445567777653 11
Q ss_pred EEEeCCCCChhhhhhchHHhhhcCCCEEEEcC---C--CCCCCCHHHHHHHHHcCCCC-CCCCcHHHHHHHHHC
Q 026289 164 ICIRREGQDVEKIISDNEILDKNKGNIKLVDE---L--VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRES 231 (240)
Q Consensus 164 vv~~R~~~~~~~~~~~~~~l~~~~~~i~~l~~---~--~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~yI~~~ 231 (240)
+.+.---+.. ..+.+...+. . ....+|+|.||+.++.|..+ ..++.|+|++.|.+.
T Consensus 319 v~~~~~~Yc~------------~c~~~~~~~~cphg~~~~~~iSgt~iR~~L~~G~~pP~~f~rpeV~~iL~~~ 380 (391)
T PRK04149 319 LKFEEAFYCP------------KCGGMASEKTCPHGKEDRVHLSGTKVREMLREGEKPPPEFSRPEVAEVLIKG 380 (391)
T ss_pred EecceeEEec------------CCCeEEEcccCCCCCCceEeeCHHHHHHHHHCcCCCCCccCcHHHHHHHHHH
Confidence 1111100000 0112222211 1 24589999999999999764 458999999988765
No 59
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=98.18 E-value=2.7e-05 Score=68.23 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC-----CCCCHHHHHHHHHHHHhcCCceeeccc
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-----GLISAEHRINLCNLACKSSDFIMVDPW 97 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~-----~~~~~~~R~~Ml~~a~~~~~~i~v~~~ 97 (240)
..+.-|.||-+|+||..+++.|.+....+.+..+-..|.|......+. .+.+..+|+++++.. +.+.+.+-++
T Consensus 17 ~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~--gvd~~~v~~F 94 (304)
T COG0196 17 CVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY--GVDALVVLDF 94 (304)
T ss_pred cEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc--CCcEEEEEeC
Confidence 344459999999999999999997665444422211355432221111 277899999887753 2334545544
Q ss_pred c
Q 026289 98 E 98 (240)
Q Consensus 98 E 98 (240)
.
T Consensus 95 ~ 95 (304)
T COG0196 95 D 95 (304)
T ss_pred C
Confidence 4
No 60
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=98.12 E-value=7.8e-06 Score=63.35 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=43.4
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc--cc-CCCCCHHHHHHHHHH
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY--KK-RGLISAEHRINLCNL 84 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~--~k-~~~~~~~~R~~Ml~~ 84 (240)
.+.+|+||=+|.||+..++.|.+. + +.++|+ .++....- .| +...+.++|++|++.
T Consensus 4 V~~~GtFDilH~GHi~~L~~Ak~l-G-d~liVv---~a~de~~~~~~k~~pi~~~~qR~evl~s 62 (140)
T COG0615 4 VWADGTFDILHPGHIEFLRQAKKL-G-DELIVV---VARDETVIKRKKRKPIMPEEQRAEVLES 62 (140)
T ss_pred EEEeeEEEEechhHHHHHHHHHHh-C-CeEEEE---EeccHHHHHhcCCCCCCCHHHHHHHHHc
Confidence 567999999999999999999874 4 677666 45554443 22 368899999999885
No 61
>PLN02413 choline-phosphate cytidylyltransferase
Probab=97.98 E-value=0.00016 Score=62.40 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-cccc-CCCCCHHHHHHHHHHHHhcCCce
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKK-RGLISAEHRINLCNLACKSSDFI 92 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k-~~~~~~~~R~~Ml~~a~~~~~~i 92 (240)
....++.+..|+||=+|.||+..++.|.+..+.+ +.+|+ +..... ...| +...+.++|.+++.. +.--+.+
T Consensus 24 ~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d-~LIVG--V~sDe~v~~~KGrPIm~~~ER~e~V~a-cKyVDeV 96 (294)
T PLN02413 24 SDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNT-YLLVG--CCNDELTHKYKGKTVMTEDERYESLRH-CKWVDEV 96 (294)
T ss_pred CCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCC-EEEEE--ecccHHHHhcCCCCCCCHHHHHHHHHh-cccccEE
Confidence 4445677779999999999999999998864323 34443 222111 1122 367899999999885 4443333
No 62
>PRK13670 hypothetical protein; Provisional
Probab=97.94 E-value=0.00012 Score=66.63 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEE-eeeecCCCCccccCCCCCHHHHHHHHHH
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYKKRGLISAEHRINLCNL 84 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv-~~~~~p~~~~~~k~~~~~~~~R~~Ml~~ 84 (240)
++|| ---|||+|+||..+++.|++..+.+.+.+| ++.|.- .....+++..+|.+|+..
T Consensus 3 ~~GI-IaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~q----rg~p~i~~~~~R~~~a~~ 61 (388)
T PRK13670 3 VTGI-IVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQ----RGEPAIVDKWTRAKMALE 61 (388)
T ss_pred eeEE-EeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhC----CCCCCCCCHHHHHHHHHH
Confidence 4555 468999999999999999997765433332 222110 011237899999999775
No 63
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.92 E-value=0.00055 Score=65.30 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCc--eeec
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF--IMVD 95 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~--i~v~ 95 (240)
+-+.++++ =+-||+|+||..+++.|.+.++. .+. +.|.- ...|.+.++++-|++-.+.+++..|. +.+.
T Consensus 185 gw~~v~af--qtrnP~Hr~He~l~~~a~~~~d~-~ll-----l~p~~-G~~k~~d~~~~~r~~~~~~~~~~~p~~~~~l~ 255 (568)
T PRK05537 185 GWRRVVAF--QTRNPLHRAHEELTKRAAREVGA-NLL-----IHPVV-GMTKPGDIDHFTRVRCYEALLDKYPPATTLLS 255 (568)
T ss_pred CCCcEEEE--ecCCCCcHHHHHHHHHHHHhcCC-eEE-----EecCC-CCCCCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 34556674 67999999999999999987631 332 34422 22466889999999999999988653 3344
Q ss_pred cccc--cCCCccChHHHHHH-HHHHHhhhccCCCCCceEEEEEcchhhhhcCC--CCCCC-hhhHHHHhhccc------E
Q 026289 96 PWEA--NQSGYQRTLTVLSR-VKNFLIEAGLISTESLKVMLVCGSDLLESFAI--PGFWM-PEQVWTICRNFG------V 163 (240)
Q Consensus 96 ~~E~--~~~~~~~t~~tl~~-l~~~~~~~~~~p~~~~~~~fl~G~D~l~~l~~--~~~w~-~~~~~~l~~~~~------~ 163 (240)
.+.. .-.|+.- ..+.. +++.|+ + -.||+|-|...--.. .+.|| .++.+++++.+. +
T Consensus 256 ~~p~~mryaGpre--ai~hAi~r~N~G---------c-th~ivGrdhAg~~~~~~~g~~Y~~~~a~~i~~~~~~~l~i~~ 323 (568)
T PRK05537 256 LLPLAMRMAGPRE--ALWHAIIRRNYG---------C-THFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYADEIGITM 323 (568)
T ss_pred eccchhcccCcHH--HHHHHHHHHhCC---------C-CeEEECCCCCCCCCCCcCcccCCchHHHHHHHhCccccCceE
Confidence 4433 2344431 12222 334442 2 358999887655220 01233 445677776541 1
Q ss_pred EEEeCCCCChhhhhhchHHhhhcCCCEEEEcCC----CCCCCCHHHHHHHHHcCCCC-CCCCcHHHHHHHHH
Q 026289 164 ICIRREGQDVEKIISDNEILDKNKGNIKLVDEL----VPNQISSTRIRDCICRGLSI-KYLTEDKVIDYIRE 230 (240)
Q Consensus 164 vv~~R~~~~~~~~~~~~~~l~~~~~~i~~l~~~----~~~~iSST~IR~~l~~g~~i-~~lvp~~V~~yI~~ 230 (240)
+.+.---+.. ....+...+.. ....+|+|.||++++.|..+ ..++.|+|++.+.+
T Consensus 324 ~~~~~~~Y~~------------~~~~~~~~~~cph~~~~~~~sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~ 383 (568)
T PRK05537 324 VPFKEMVYVQ------------DKAQYVPVDEVPQGATVLTISGTELRRRLREGLEIPEWFSFPEVVAELRR 383 (568)
T ss_pred EecceeEEEc------------CCCeEEecCcCCCCcceeccCHHHHHHHHHCCCCCChhhcHHHHHHHHHH
Confidence 1111100000 00122222211 24689999999999999864 45899999996665
No 64
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.86 E-value=6.6e-05 Score=59.85 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=37.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccc---c--CCCCCHHHHHHHHHHH
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---K--RGLISAEHRINLCNLA 85 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~---k--~~~~~~~~R~~Ml~~a 85 (240)
..+.-|.||-+|+||..|++.|.+.....++..+-..|.|...... + ..+.+.++|+++++..
T Consensus 7 ~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~ 74 (157)
T PF06574_consen 7 SVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL 74 (157)
T ss_dssp EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT
T ss_pred cEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc
Confidence 3444599999999999999999988754443222123665432111 1 2488999999999873
No 65
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.85 E-value=0.00024 Score=66.21 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHHHhcCCce
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLACKSSDFI 92 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a~~~~~~i 92 (240)
..++.+..|.||..|.||+.+++.|++.. +.+. ++..+-+. ....| ....+.++|.++++ ++...+++
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~--~~l~-v~v~~d~~-~~~~k~~~~pi~~~~~R~~~~~-~~~~vd~v 409 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLG--DRLI-VAVNSDAS-VKRLKGEGRPVNPLEQRMAVLA-ALEAVDWV 409 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhC--CeeE-EEEeCchh-HHHhCCCCCCCCCHHHHHHHHH-hcCcCCEE
Confidence 34777889999999999999999998864 3343 32122111 11123 24789999999984 34444454
No 66
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.54 E-value=0.00017 Score=56.40 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc----CCCCCHHHHHHHHHHHHh
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK----RGLISAEHRINLCNLACK 87 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k----~~~~~~~~R~~Ml~~a~~ 87 (240)
+..+.+.||+||+.|.||..|+..|... + +++. ++ + .++...| ....+++.|++=+...+.
T Consensus 4 kfm~vavGGTFd~LH~GHk~LL~~A~~~-G-~~v~-IG-l---TsDe~~k~~k~~~i~p~~~R~~~l~~fl~ 68 (158)
T COG1019 4 KFMKVAVGGTFDRLHDGHKKLLEVAFEI-G-DRVT-IG-L---TSDELAKKKKKEKIEPYEVRLRNLRNFLE 68 (158)
T ss_pred cceEEEecccchhhhhhHHHHHHHHHHh-C-CeEE-EE-E---ccHHHHHHhccccCCcHHHHHHHHHHHHH
Confidence 3445556999999999999999999874 3 2332 22 1 2332211 246788888877665443
No 67
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.45 E-value=0.00038 Score=62.25 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=37.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHH
Q 026289 27 TGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (240)
Q Consensus 27 gGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~ 84 (240)
---|||+|+||+.+++.|.+.++.|.+.++ ++..-........++..+|.+|.-.
T Consensus 7 i~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~---msgdf~qRgepai~~k~~r~~~aL~ 61 (358)
T COG1323 7 IAEYNPFHNGHQYHINKAREEFKGDEIIAV---MSGDFTQRGEPAIGHKWERKKMALE 61 (358)
T ss_pred eeecCcccccHHHHHHHHHHhccCCceEEe---eecchhhcCCCccccHHHHHhhhhh
Confidence 356999999999999999997776665443 3321111222346788888888543
No 68
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=97.21 E-value=0.0017 Score=59.28 Aligned_cols=72 Identities=17% Similarity=0.339 Sum_probs=48.7
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC-Ccccc---CCCCCHHHHHHHHHHHHhcCCce
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN-DAYKK---RGLISAEHRINLCNLACKSSDFI 92 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~-~~~~k---~~~~~~~~R~~Ml~~a~~~~~~i 92 (240)
++...+|.+.+|+||=+|.||+.+++.|.+. + + ..+|+ +.... ....| ....+.++|.+++.. +.--+.+
T Consensus 247 p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~l-G-d-~LIVG--V~sD~~v~~~KG~~~Pi~~~~ER~~~v~a-ck~VD~V 320 (418)
T PLN02406 247 PGPDARIVYIDGAFDLFHAGHVEILRLARAL-G-D-FLLVG--IHTDQTVSAHRGAHRPIMNLHERSLSVLA-CRYVDEV 320 (418)
T ss_pred CCCCCeEEEECCeeccCCHHHHHHHHHHHHh-C-C-EEEEE--EeccHHHHHhcCCCCCCCCHHHHHHHHhc-cCcccEE
Confidence 4556788999999999999999999999874 3 3 44554 22211 11123 357899999999875 4444444
Q ss_pred ee
Q 026289 93 MV 94 (240)
Q Consensus 93 ~v 94 (240)
.+
T Consensus 321 Vi 322 (418)
T PLN02406 321 II 322 (418)
T ss_pred Ee
Confidence 33
No 69
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.00 E-value=0.0011 Score=60.41 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=29.1
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHH
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLC 82 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml 82 (240)
+|| ---|||+|+||+..++.+++..+.|.+.+| +|..-..-.....++.-.|.+|-
T Consensus 4 ~GI-IaEYNPFHnGH~y~i~~~k~~~~ad~ii~v---MSGnFvQRGEPAi~dKw~RA~~A 59 (388)
T PF05636_consen 4 VGI-IAEYNPFHNGHLYQIEQAKKITGADVIIAV---MSGNFVQRGEPAIIDKWTRAEMA 59 (388)
T ss_dssp ----E---TT--HHHHHHHHHHH---TSSEEEEE---E--TTSBTSSB-SS-HHHHHHHH
T ss_pred CCe-EEeECCccHHHHHHHHHHhccCCCCEEEEE---ECCCcccCCCeeeCCHHHHHHHH
Confidence 444 467999999999999999999987776554 55422211112477889998883
No 70
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=96.11 E-value=0.0052 Score=51.88 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=51.1
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC---C-CCCHHHHHHHHHHHHhcC-Cc
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR---G-LISAEHRINLCNLACKSS-DF 91 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~---~-~~~~~~R~~Ml~~a~~~~-~~ 91 (240)
+.+...+...||+||=.|.||--++..|.. +..+.+ +|+ +.+.+--.|+ . +-+.++|++-+...+.+. |.
T Consensus 138 ~a~~~~~~alGGTFDrLH~gHKvLLs~aa~-la~~~l-VvG---V~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~ 212 (293)
T KOG3351|consen 138 PANKFMVVALGGTFDRLHDGHKVLLSVAAE-LASDRL-VVG---VTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPD 212 (293)
T ss_pred chhcceeEEeccchhhhccchHHHHHHHHH-HhhceE-EEE---ecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 445567788899999999999998887765 455555 454 2222222222 2 568899999999888774 44
Q ss_pred eeeccccc
Q 026289 92 IMVDPWEA 99 (240)
Q Consensus 92 i~v~~~E~ 99 (240)
+.+.-.-+
T Consensus 213 l~~~~vpi 220 (293)
T KOG3351|consen 213 LNVRVVPI 220 (293)
T ss_pred ceEEEEec
Confidence 44443333
No 71
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=94.46 E-value=0.071 Score=46.66 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccC-CCCCHHHHHHHHHH
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR-GLISAEHRINLCNL 84 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~-~~~~~~~R~~Ml~~ 84 (240)
.+.-.-..|.||-+|.||-+.+.+|++ +| +++ +++ .-+--.-..+|- ..++.+||.+|++.
T Consensus 7 ~~~rVw~DGCfDm~HyGHanaLrQAka-lG-dkL-ivG-VHsDeeI~~nKGpPV~t~eERy~~v~~ 68 (358)
T KOG2803|consen 7 RPVRVWADGCFDMVHYGHANALRQAKA-LG-DKL-IVG-VHSDEEITLNKGPPVFTDEERYEMVKA 68 (358)
T ss_pred CceeEEeccchhhhhhhhhHHHHHHHH-hC-CeE-EEE-ecchHHHHhcCCCCcccHHHHHHHHhh
Confidence 334566799999999999999999975 44 444 443 111111112342 57899999999874
No 72
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=92.32 E-value=0.37 Score=41.97 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=34.8
Q ss_pred EcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc-c--cCCCCCHHHHHHHHHHH
Q 026289 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-K--KRGLISAEHRINLCNLA 85 (240)
Q Consensus 26 fgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~-~--k~~~~~~~~R~~Ml~~a 85 (240)
..|. .|.||+.|++.|.+.. ...++.-+..|..-.+ . .+.+.+.++++++++.+
T Consensus 29 TmG~---LH~GH~~LI~~a~~~a---~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 29 TMGA---LHEGHLSLVRRARAEN---DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred CCCc---ccHHHHHHHHHHHHhC---CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 4555 9999999999999865 3334432333322111 1 12477899999998864
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=91.79 E-value=0.49 Score=41.30 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccc---cCCCCCHHHHHHHHHHH
Q 026289 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (240)
Q Consensus 33 ~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~---k~~~~~~~~R~~Ml~~a 85 (240)
.|.||+.|++.|.+..+ ..|+--+..|..-.+. .+.+.+.++|+++++.+
T Consensus 32 LH~GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 32 LHEGHLSLVRAARARAD---VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred hhHHHHHHHHHHHHhCC---EEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 99999999999998653 3333222233221111 12477899999998864
No 74
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=91.25 E-value=0.52 Score=41.14 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=36.2
Q ss_pred EEEE--EcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc-c--cCCCCCHHHHHHHHHHH
Q 026289 22 VVLV--ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-K--KRGLISAEHRINLCNLA 85 (240)
Q Consensus 22 ~i~i--fgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~-~--k~~~~~~~~R~~Ml~~a 85 (240)
.||+ ..|. +|.||+.|++.|.+.. + ..|+.-+..|..-.+ . .+.+.+.++++++++.+
T Consensus 23 ~ig~VpTmG~---LH~GH~~LI~~a~~~a--~-~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 23 TVGFVPTMGN---LHDGHMSLIDRAVAEN--D-VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred eEEEEECCCc---ccHHHHHHHHHHHHhC--C-eEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 4544 5565 9999999999999865 3 334432223322111 1 12477899999998864
No 75
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=91.12 E-value=0.43 Score=41.93 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEe
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~ 57 (240)
..+|....|.||=+|.||+..++.|.+.. | +.+|+
T Consensus 197 ~~kvVYvdGaFDLFH~GHl~~Le~ak~lg--d-yLIvG 231 (358)
T KOG2803|consen 197 TDKVVYVDGAFDLFHAGHLDFLEKAKRLG--D-YLIVG 231 (358)
T ss_pred CCcEEEEcCchhhhccchHHHHHHHHhcc--C-ceEEE
Confidence 35788889999999999999999998754 4 44444
No 76
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=90.98 E-value=0.51 Score=41.20 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=34.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc---ccCCCCCHHHHHHHHHHH
Q 026289 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (240)
Q Consensus 24 ~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~---~k~~~~~~~~R~~Ml~~a 85 (240)
.+.-|. +|.||+.+++.|.+.. + ..++.-+..|..-.+ ..+.+.+.++|+++++.+
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a--~-~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEA--D-IVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhC--C-EEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 344455 9999999999999865 3 333321222211110 112467899999998864
No 77
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=90.44 E-value=1.6 Score=39.42 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCe--EEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhc
Q 026289 29 SFNPPTFMHLRMFELARDTLNSEGY--CVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (240)
Q Consensus 29 SFnP~H~GHl~l~~~a~~~~~~~~~--~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~ 88 (240)
-=||+|+||-.+++...+.+-..++ -++ ++.|.. .+.|.+..+..-|+.--.+.++.
T Consensus 423 lrnpvhnghallm~dt~~~ll~~g~k~pvl--llhplg-gwtkdddvpl~~rmkqh~avl~e 481 (627)
T KOG4238|consen 423 LRNPVHNGHALLMQDTRRRLLERGYKHPVL--LLHPLG-GWTKDDDVPLDWRMKQHAAVLEE 481 (627)
T ss_pred ecCccccchhhHhHhHHHHHHHhcccCceE--EEecCC-CCccCCCccchhhhHHHHHHHHh
Confidence 4599999999999998887632221 111 134533 34566778888888776666654
No 78
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=88.49 E-value=1.1 Score=39.12 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-cccc-C--CCCCHHHHHHHHHH
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKK-R--GLISAEHRINLCNL 84 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k-~--~~~~~~~R~~Ml~~ 84 (240)
+|+ +-....|-||=+|.||..-+++|.+.+. .+++| +.-|++ .-+| + ...+..+|.+-++-
T Consensus 61 ~RP-VRVYADGIyDLFH~GHarqL~QaK~~FP--NvyLi---VGvc~De~Thk~KG~TVm~e~ERyE~lrH 125 (348)
T KOG2804|consen 61 DRP-VRVYADGIYDLFHYGHARQLEQAKKLFP--NVYLI---VGVCSDELTHKFKGRTVMNENERYEALRH 125 (348)
T ss_pred CCc-eEEEccchHHHhhhhHHHHHHHHHHhCC--CeEEE---EeecCchhhhhccCceecChHHHHHHhhh
Confidence 444 5667799999999999999999998773 44433 222343 3344 2 36788999887654
No 79
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.97 E-value=1.1 Score=40.82 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=42.3
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc------CCCCCHHHHHHHHHHHHhcCCce
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK------RGLISAEHRINLCNLACKSSDFI 92 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k------~~~~~~~~R~~Ml~~a~~~~~~i 92 (240)
+|.+.-|.||=.|.||...+..|++.. |.+ +|+ +. .++..| ++.-+.+.|..++.. ++.-+++
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~L-ivg--~N--sDaSvkrLKG~~RPin~~~~Ra~vLa~-L~~VD~v 401 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALG--DRL-IVG--VN--SDASVKRLKGESRPINSEEDRAAVLAA-LESVDLV 401 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhC--CeE-EEE--ec--cchhhhhhcCCCCCCCcHHHHHHHHhh-cccceEE
Confidence 489999999999999999999998854 444 443 22 222222 245677888877653 4444443
No 80
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=80.60 E-value=3.5 Score=35.97 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHH
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 85 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a 85 (240)
..||+.+ |=-=.|.||+.|++.|++.. .+.+|..|+.|..-++.. +.+-+.+.=+++|+.+
T Consensus 22 ~~igfVP-TMGaLHeGHlsLi~~A~~~~---d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 22 KTIGFVP-TMGALHEGHLSLIRRARAEN---DVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp SSEEEEE-E-SS--HHHHHHHHHHHHHS---SEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred CeEEEEC-CCchhhHHHHHHHHHHHhCC---CEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 3455532 22335999999999999764 355666666665433222 3456677777777754
No 81
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=78.84 E-value=21 Score=30.38 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=51.4
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCc---------cccCCCCCHHHHHHHHHHHHh
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA---------YKKRGLISAEHRINLCNLACK 87 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~---------~~k~~~~~~~~R~~Ml~~a~~ 87 (240)
++.++.|+-||+.=.||-..++..++...+.+. |...++-.|+-=+|.. +.=+..-+.++|+.+.+...+
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~-d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~ 178 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS-DVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKE 178 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhh-hhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHh
Confidence 445568999999999999999988877766553 3222222233322221 111245789999999998887
Q ss_pred cCCc--eeecccc
Q 026289 88 SSDF--IMVDPWE 98 (240)
Q Consensus 88 ~~~~--i~v~~~E 98 (240)
..+. +.||+.+
T Consensus 179 ~~~~~pi~vD~md 191 (237)
T PF00837_consen 179 EFPQCPIVVDTMD 191 (237)
T ss_pred hCCCCCEEEEccC
Confidence 6553 3445443
No 82
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=78.64 E-value=4.9 Score=38.11 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=41.3
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHH
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 85 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a 85 (240)
.||+. -|--=.|.||+.|++.|++.. | +.||-.|+.|..-++.. +.+-+.++=+++|+.+
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~~--d-~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQEN--D-VVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred cEEEE-CCCcchhHHHHHHHHHHHHhC--C-EEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 56664 344558999999999999864 3 45666667775543322 3567788888888764
No 83
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=73.65 E-value=8.4 Score=33.44 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHH
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 85 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a 85 (240)
.++||+. =+-.=.|.||+.|++.|++.. | +.||-.|+.|..-.+.. +.+-+.++=+++|+..
T Consensus 21 gk~Vg~V-PTMG~LH~GHlsLVr~A~~~~--d-~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~ 85 (285)
T COG0414 21 GKRVGLV-PTMGNLHEGHLSLVRRAKKEN--D-VVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE 85 (285)
T ss_pred CCEEEEE-cCCcccchHHHHHHHHHhhcC--C-eEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc
Confidence 3456664 345558999999999998754 3 44565667775543322 3466777777777753
No 84
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=71.21 E-value=4.7 Score=32.60 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.0
Q ss_pred CCCCCCCCcHHHHHHHHHCCCC
Q 026289 213 GLSIKYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 213 g~~i~~lvp~~V~~yI~~~~LY 234 (240)
+...+.-||++|++||++|++-
T Consensus 92 ddK~k~~LPddVI~YmrdNgI~ 113 (196)
T PRK15364 92 DAKTKEEVPEDVIKYMRDNGIL 113 (196)
T ss_pred CCcccccCCHHHHHHHHHcCce
Confidence 4445677999999999999874
No 85
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=60.52 E-value=66 Score=24.03 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=39.2
Q ss_pred CCChhhhcccccccCCceEEEEEcCCCCchhHHHHHH--HHHHHHHhccCCeEEEeeeecCCCCcccc-CCCCCHHHHHH
Q 026289 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRM--FELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRIN 80 (240)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~i~ifgGSFnP~H~GHl~l--~~~a~~~~~~~~~~vv~~~~~p~~~~~~k-~~~~~~~~R~~ 80 (240)
.||-++...+.+..-+...|.|.....+|++-..+++ +-.|.+..+...+.+|--|+.=+.+...+ ...++...=.+
T Consensus 31 ~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~ 110 (116)
T PF13793_consen 31 RFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAK 110 (116)
T ss_dssp E-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHH
T ss_pred EcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHH
Confidence 3777888888876656667888788888876555544 44555556666665442232222232111 13555555555
Q ss_pred HHHH
Q 026289 81 LCNL 84 (240)
Q Consensus 81 Ml~~ 84 (240)
|++.
T Consensus 111 lL~~ 114 (116)
T PF13793_consen 111 LLSA 114 (116)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 86
>PRK13671 hypothetical protein; Provisional
Probab=59.43 E-value=7.9 Score=34.09 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHcCCCCCCCCcHHHHHHHH
Q 026289 199 NQISSTRIRDCICRGLSIKYLTEDKVIDYIR 229 (240)
Q Consensus 199 ~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~ 229 (240)
.-.|+|.||+.+..|.++...||+...+.+.
T Consensus 194 ~~aSAtaIR~~l~~~~~~~~~~p~~~~~~l~ 224 (298)
T PRK13671 194 NYASATYLRKMIFENKDISKYSPMKFKKPPK 224 (298)
T ss_pred CcccHHHHHHHHhccchHHHhCCHHHHHHHH
Confidence 3589999999997777899999999877664
No 87
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=55.85 E-value=89 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=38.7
Q ss_pred EEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhc
Q 026289 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (240)
Q Consensus 22 ~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~ 88 (240)
+-....|++||- .+..|.+. +.|+|.|+++-+.-|| ....-.-...|++.+..++..
T Consensus 33 Irv~CsGrvn~~------fvl~Al~~-GaDGV~v~GC~~geCH---y~~GN~ka~rR~~~lke~l~e 89 (132)
T COG1908 33 IRVMCSGRVNPE------FVLKALRK-GADGVLVAGCKIGECH---YISGNYKAKRRMELLKELLKE 89 (132)
T ss_pred EEeeccCccCHH------HHHHHHHc-CCCeEEEeccccccee---eeccchHHHHHHHHHHHHHHH
Confidence 336678999995 33445443 6799987765444433 233557789999999998876
No 88
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=55.31 E-value=6.2 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=23.7
Q ss_pred CChhhhcccccc-c---CCceEEEEEcCCCCch
Q 026289 5 LPLEKLSLESKT-Q---GKTYVVLVATGSFNPP 33 (240)
Q Consensus 5 ~p~~~~~~~~~~-~---~~~~~i~ifgGSFnP~ 33 (240)
=|.||+++++++ | ++-+.|.+.||+|+.+
T Consensus 125 GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~ 157 (311)
T COG1957 125 GPLTNIALALRKDPEIAKRIKEIVIMGGAFFVP 157 (311)
T ss_pred CChHHHHHHHHhCcchhhhhcEEEEecCccCCC
Confidence 499999999973 2 5667899999999883
No 89
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=52.44 E-value=5.2 Score=27.55 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=13.2
Q ss_pred cHHHHHHHHHCCCCCCCC
Q 026289 221 EDKVIDYIRESRLYLNSN 238 (240)
Q Consensus 221 p~~V~~yI~~~~LY~~~~ 238 (240)
-..+++||++|+|+...+
T Consensus 26 ~~~lw~YIk~~~L~dp~~ 43 (76)
T PF02201_consen 26 VKRLWQYIKENNLQDPKD 43 (76)
T ss_dssp HHHHHHHHHHTTSBESSS
T ss_pred HHHHHHHHHHhcCCCccc
Confidence 344678999999986543
No 90
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=43.51 E-value=96 Score=22.29 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=30.8
Q ss_pred cCCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEe
Q 026289 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (240)
Q Consensus 17 ~~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~ 57 (240)
+++...|.++.++.+|.-..++.-+..+.+.+...++.+++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~ 64 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIG 64 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeee
Confidence 34555666666669999999998888888887766777764
No 91
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=42.13 E-value=1.9e+02 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.1
Q ss_pred ceEEEEEcchhhhhcCCCCCCChhhHHHHh
Q 026289 129 LKVMLVCGSDLLESFAIPGFWMPEQVWTIC 158 (240)
Q Consensus 129 ~~~~fl~G~D~l~~l~~~~~w~~~~~~~l~ 158 (240)
.+..|+.|-|++.-+.. |.+..+.+.+
T Consensus 84 ad~I~~~GG~~~~~~~~---l~~t~l~~~l 110 (217)
T cd03145 84 ADGIFFTGGDQLRITSA---LGGTPLLDAL 110 (217)
T ss_pred CCEEEEeCCcHHHHHHH---HcCChHHHHH
Confidence 57999999999988885 5543333433
No 92
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=41.51 E-value=20 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=12.7
Q ss_pred CcHHHHHHHHHCCCCCC
Q 026289 220 TEDKVIDYIRESRLYLN 236 (240)
Q Consensus 220 vp~~V~~yI~~~~LY~~ 236 (240)
|-..+++||++|+|...
T Consensus 25 v~~~lw~YIk~n~L~d~ 41 (77)
T smart00151 25 IIKRLWEYIKEHNLQDP 41 (77)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 44466789999999853
No 93
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=38.33 E-value=2.3e+02 Score=24.09 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.1
Q ss_pred ceEEEEEcchhhhhcCCC
Q 026289 129 LKVMLVCGSDLLESFAIP 146 (240)
Q Consensus 129 ~~~~fl~G~D~l~~l~~~ 146 (240)
++..|+.|-|++.-+..|
T Consensus 83 ad~I~~~GGnq~~l~~~l 100 (250)
T TIGR02069 83 ATGIFFTGGDQLRITSLL 100 (250)
T ss_pred CCEEEEeCCCHHHHHHHH
Confidence 579999999999877753
No 94
>PF03433 EspA: EspA-like secreted protein ; InterPro: IPR005095 EspA is the prototypical member of this family. EspA, together with EspB, EspD and Tir are exported by a type III secretion system. These proteins are essential for attaching and effacing lesion formation. EspA is a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell [, ].; PDB: 1XOU_A.
Probab=38.14 E-value=11 Score=30.87 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHHCCCC
Q 026289 217 KYLTEDKVIDYIRESRLY 234 (240)
Q Consensus 217 ~~lvp~~V~~yI~~~~LY 234 (240)
+.-||++|++|+++||+-
T Consensus 96 k~~lp~dVi~Ym~~ngI~ 113 (188)
T PF03433_consen 96 KAPLPDDVIDYMRDNGIK 113 (188)
T ss_dssp ------------------
T ss_pred cccCCHHHHHHHHHcCCe
Confidence 456999999999999874
No 95
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=37.27 E-value=15 Score=32.22 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=21.3
Q ss_pred Chhhhcccccc----cCCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESKT----QGKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~~----~~~~~~i~ifgGSFnP 32 (240)
|.|||+++++. .++-+.|.+.||+|.+
T Consensus 125 PLTNlA~al~~~P~i~~~i~~iviMGG~~~~ 155 (304)
T PRK10768 125 PLTNIALLLSTYPEVKPYIKRIVLMGGSAGR 155 (304)
T ss_pred cHHHHHHHHHHChhhHhhcCEEEEecCCcCc
Confidence 88999999873 3555688899999864
No 96
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=36.89 E-value=11 Score=34.39 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHH--HcCCCCCCCCcHHHHHHH
Q 026289 199 NQISSTRIRDCI--CRGLSIKYLTEDKVIDYI 228 (240)
Q Consensus 199 ~~iSST~IR~~l--~~g~~i~~lvp~~V~~yI 228 (240)
.-.|+|.||+.+ ..+..+..+||+.+.+.+
T Consensus 200 ~~aSAtaIR~~l~~~~~~~~~~~vP~~~~~~l 231 (388)
T PF05636_consen 200 NFASATAIRKALSNNDLEEISNYVPKSSYEIL 231 (388)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 456999999999 445678999999999988
No 97
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=34.44 E-value=50 Score=31.24 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=25.9
Q ss_pred HHhcCCceeeccccccCCCccChHHHHHHHHHHHh
Q 026289 85 ACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLI 119 (240)
Q Consensus 85 a~~~~~~i~v~~~E~~~~~~~~t~~tl~~l~~~~~ 119 (240)
|+.+.|-+--+.|+-..+++.|.+|.+++++++|+
T Consensus 111 ALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YG 145 (590)
T KOG0564|consen 111 ALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYG 145 (590)
T ss_pred hhcCCCCCCccccccccCCchhHHHHHHHHHHHhC
Confidence 33444444444577777789999999999999995
No 98
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=33.89 E-value=20 Score=31.70 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=20.8
Q ss_pred Chhhhccccc-cc---CCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESK-TQ---GKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~-~~---~~~~~i~ifgGSFnP 32 (240)
|.|||++++. .| ++-+.|.+.||+|.+
T Consensus 126 PLTNlA~al~~~P~~~~~i~~iviMGG~~~~ 156 (313)
T PRK09955 126 PLSNIAVAMRMQPAILPKIREIVLMGGAYGT 156 (313)
T ss_pred cHHHHHHHHHHChHHHHhCCEEEEeCCCCCC
Confidence 8899999886 32 455689999999843
No 99
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=33.64 E-value=49 Score=27.86 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcccc---CCCCCHHHHHHHHHHH
Q 026289 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRINLCNLA 85 (240)
Q Consensus 20 ~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~k---~~~~~~~~R~~Ml~~a 85 (240)
..+||+.. +--=.|.||..+++++.+.- .+.||-.|+.|..-++.. ..+-+..+-+..++..
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~~---~~tVVSIfVNP~QF~pteDL~~YPrt~~~D~~~L~~L 87 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKEN---TYTVVSIFVNPSQFAPTEDLDNYPRTLPDDIKLLESL 87 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhhC---ceEEEEEEechhhcCChhHhhcCCccCccHHHHHHhc
Confidence 55777643 44557999999999998753 455666666775533322 1234444555555543
No 100
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.21 E-value=2.2e+02 Score=25.43 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=50.1
Q ss_pred CCChhhhcccccccCCceEEEEEcCCCCch--hHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc-cc-CCCCCHHHHH
Q 026289 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-KK-RGLISAEHRI 79 (240)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~i~ifgGSFnP~--H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~-~k-~~~~~~~~R~ 79 (240)
.||-++...+.+..=+...|.|.....+|+ +...+.++-.|.+..+...+.+|--|+.=+.+.. .+ ...++...-.
T Consensus 40 ~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA 119 (332)
T PRK00553 40 KFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVA 119 (332)
T ss_pred ECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHH
Confidence 377777777777555566777777666676 5666666777777777777654421322222221 11 1477887777
Q ss_pred HHHHHH
Q 026289 80 NLCNLA 85 (240)
Q Consensus 80 ~Ml~~a 85 (240)
+|++.+
T Consensus 120 ~ll~~~ 125 (332)
T PRK00553 120 DLLTKA 125 (332)
T ss_pred HHHHhc
Confidence 787764
No 101
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=32.52 E-value=22 Score=31.53 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.2
Q ss_pred Chhhhccccc-cc---CCceEEEEEcCCC
Q 026289 6 PLEKLSLESK-TQ---GKTYVVLVATGSF 30 (240)
Q Consensus 6 p~~~~~~~~~-~~---~~~~~i~ifgGSF 30 (240)
|.|||+++++ .+ ++-++|.+.||+|
T Consensus 138 PLTNlA~al~~~P~~~~~i~~iviMGG~~ 166 (318)
T cd02654 138 PLTNLALALRIDPDFAPLAKELVIMGGYL 166 (318)
T ss_pred cHHHHHHHHHHChhHHHhCCEEEEeCCCc
Confidence 8899999997 22 4557899999998
No 102
>PF13915 DUF4210: Domain of unknown function (DUF4210)
Probab=32.02 E-value=22 Score=23.98 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=12.0
Q ss_pred EEEEEcCCCCchhH
Q 026289 22 VVLVATGSFNPPTF 35 (240)
Q Consensus 22 ~i~ifgGSFnP~H~ 35 (240)
.|++.|+.|.|+|.
T Consensus 28 ~igvsG~~~cP~h~ 41 (66)
T PF13915_consen 28 EIGVSGSGFCPPHV 41 (66)
T ss_pred EEEccccccCCCcE
Confidence 58898888999984
No 103
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=31.55 E-value=22 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=21.3
Q ss_pred Chhhhcccccc-c---CCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESKT-Q---GKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~~-~---~~~~~i~ifgGSFnP 32 (240)
|.|||+++++. | ++-+.|.+.||+|++
T Consensus 126 PLTNlA~al~~~P~~~~~i~~iviMGG~~~~ 156 (311)
T PRK10443 126 PQTNVALLLASHPELHSKIARIVIMGGAMGL 156 (311)
T ss_pred chHHHHHHHHHCchhhhhhCEEEEccCCCCC
Confidence 88999999873 2 555789999999964
No 104
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]
Probab=31.23 E-value=29 Score=29.61 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCCCC
Q 026289 198 PNQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNSN 238 (240)
Q Consensus 198 ~~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~~ 238 (240)
..++|.+.=+ -+....--+.-|-..|++||++|+|+-..+
T Consensus 103 l~~ls~~L~~-~~G~~~lsR~~vvk~iw~YIke~nLqDP~n 142 (240)
T KOG1946|consen 103 LIPLSPSLAR-FVGTSELSRTDVVKKIWAYIKEHNLQDPKN 142 (240)
T ss_pred ccccCHHHHh-hcccccccHHHHHHHHHHHHHHhccCCccc
Confidence 3566655533 221111123347788999999999986443
No 105
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=30.94 E-value=24 Score=31.39 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=20.1
Q ss_pred CChhhhcccccc-c----CCceEEEEEcCCCC
Q 026289 5 LPLEKLSLESKT-Q----GKTYVVLVATGSFN 31 (240)
Q Consensus 5 ~p~~~~~~~~~~-~----~~~~~i~ifgGSFn 31 (240)
=|.|||+++++. + ++-+.|.+.||+|.
T Consensus 138 GPLTNlAlal~~~pp~~~~~ik~iviMGG~~~ 169 (326)
T PTZ00313 138 GPLSNVAWCIEKYGEEFTKKVEECVIMGGAVD 169 (326)
T ss_pred CcHHHHHHHHHhCCHHHHHhcCEEEEeCCccc
Confidence 388899988863 2 45568889999984
No 106
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=29.82 E-value=2.9e+02 Score=24.19 Aligned_cols=82 Identities=22% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCChhhhcccccccCCceEEEEEcCCCCch---hHHHHHHHHHHHHHhccCCeEEEeeeecCCCCccc-c-CCCCCHHHH
Q 026289 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPP---TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHR 78 (240)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~i~ifgGSFnP~---H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~~-k-~~~~~~~~R 78 (240)
.||-++...+....-+...|.|...|..|+ +...+.++-.|.+..+..++.+|--|+.=+.+... + ...++...-
T Consensus 31 ~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~ 110 (308)
T TIGR01251 31 RFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAKLV 110 (308)
T ss_pred ECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhccccCCCCCchHHHH
Confidence 477777666666554555676663555544 55667777777777777777544224332333211 1 136787777
Q ss_pred HHHHHHH
Q 026289 79 INLCNLA 85 (240)
Q Consensus 79 ~~Ml~~a 85 (240)
.+|++.+
T Consensus 111 a~ll~~~ 117 (308)
T TIGR01251 111 ANLLETA 117 (308)
T ss_pred HHHHHHc
Confidence 8888764
No 107
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=28.44 E-value=29 Score=30.33 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.1
Q ss_pred Chhhhccccc-cc---CCceEEEEEcCCC
Q 026289 6 PLEKLSLESK-TQ---GKTYVVLVATGSF 30 (240)
Q Consensus 6 p~~~~~~~~~-~~---~~~~~i~ifgGSF 30 (240)
|.|||+++++ .+ ++-++|.+.||+|
T Consensus 123 PLTNlA~al~~~P~~~~~ik~iviMGG~~ 151 (302)
T cd02651 123 PLTNIALLLRKYPELAERIKEIVLMGGAL 151 (302)
T ss_pred chHHHHHHHHHChhhHhhcCEEEEecCCc
Confidence 8899999987 33 4556899999998
No 108
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=27.83 E-value=51 Score=29.98 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEcCCCCchhHHHHHHHHHHHHH
Q 026289 23 VLVATGSFNPPTFMHLRMFELARDT 47 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~l~~~a~~~ 47 (240)
+.--|.||||..-.|..++..|.+.
T Consensus 180 ~Ph~G~SYNP~~edhqelL~~a~~~ 204 (387)
T PF07767_consen 180 VPHPGQSYNPSFEDHQELLAKAVEK 204 (387)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 3446899999999999999988764
No 109
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=26.72 E-value=2.2e+02 Score=27.82 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=51.4
Q ss_pred EEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCCC-ccccC-CCCCHHHHHHHHHHHHhcC-----Cceeeccc
Q 026289 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVND-AYKKR-GLISAEHRINLCNLACKSS-----DFIMVDPW 97 (240)
Q Consensus 25 ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~-~~~k~-~~~~~~~R~~Ml~~a~~~~-----~~i~v~~~ 97 (240)
.--|-|-|.+.++..+++.+++. +.+ -|... .+.+. .-.+..++.++++.-+++. .++.+...
T Consensus 140 ~wrge~~p~~~~e~~~i~~~l~~---e~f-------~~~~~~~~~~~~~~l~~~eq~~~l~~rl~~ys~k~y~k~~~~~~ 209 (621)
T cd05535 140 AWRGEYFPASRGEYERIKQQLES---EKF-------PPLFPGGPPKSFHELSPEEQAEELKKRLKDYSRKVYKKTHVTKE 209 (621)
T ss_pred eeeecccCCCHHHHHHHHHHHHh---ccc-------CCcCCCCCCcchhhCCHHHHHHHHHHHHHHHHHHHhccccccee
Confidence 34689999999999998888764 222 11111 11122 3578888888888777663 23333322
Q ss_pred cc-----cCCCccChHHHHHHHHHH
Q 026289 98 EA-----NQSGYQRTLTVLSRVKNF 117 (240)
Q Consensus 98 E~-----~~~~~~~t~~tl~~l~~~ 117 (240)
+. .+...++.++|++.|+++
T Consensus 210 ~~~~~~vCqrEn~Fyvdtvr~Frdr 234 (621)
T cd05535 210 EERSTTICQRENPFYVDTVRAFRDR 234 (621)
T ss_pred EEEeeeeEeccCCcHHhhHHHHHHH
Confidence 21 244567889999888754
No 110
>PLN02717 uridine nucleosidase
Probab=26.62 E-value=32 Score=30.41 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred Chhhhcccccc----cCCceEEEEEcCCCC
Q 026289 6 PLEKLSLESKT----QGKTYVVLVATGSFN 31 (240)
Q Consensus 6 p~~~~~~~~~~----~~~~~~i~ifgGSFn 31 (240)
|.|||++++.. .++-+.|.+.||+|.
T Consensus 126 PLTNlA~al~~~P~~~~~ik~iviMGG~~~ 155 (316)
T PLN02717 126 PLTNLALAIKLDPSFAKKVGQIVVLGGAFF 155 (316)
T ss_pred cHHHHHHHHHHChHHHhhcCEEEEeCCCcC
Confidence 88999998862 245568999999984
No 111
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=26.22 E-value=32 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=21.1
Q ss_pred Chhhhccccc-c---cCCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESK-T---QGKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~-~---~~~~~~i~ifgGSFnP 32 (240)
|.|||+++++ . .++-+.|.+.||+|..
T Consensus 122 PLTNlA~al~~~P~~~~~ik~iviMGG~~~~ 152 (320)
T cd02653 122 PLTNLALALREEPELPRLLRRLVIMGGAFNS 152 (320)
T ss_pred chHHHHHHHHHChHHHHhcCEEEEECCCcCC
Confidence 8899999997 2 2455689999999853
No 112
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=26.11 E-value=2.2e+02 Score=21.01 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEe
Q 026289 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (240)
Q Consensus 19 ~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~ 57 (240)
+...|.+|.++++|+=..|+.-+....+.+...++.+|.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~ 62 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVA 62 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEE
Confidence 344455557999999999998888877777555676654
No 113
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=25.62 E-value=2e+02 Score=26.69 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccC--CeEEEeeeecCCCCccccCCCCCHHHHHHHHHHHHhcCCceeecccc
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSE--GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~--~~~vv~~~~~p~~~~~~k~~~~~~~~R~~Ml~~a~~~~~~i~v~~~E 98 (240)
..+.++++| |.|--+++..+.+.+... +..+| ++|-|. ||+..++..++... +.+..+.
T Consensus 231 r~v~iaaST----H~GEeei~l~~~~~l~~~~~~~llI---lVPRHp-----------ERf~~v~~l~~~~g-l~~~~rS 291 (419)
T COG1519 231 RPVWVAAST----HEGEEEIILDAHQALKKQFPNLLLI---LVPRHP-----------ERFKAVENLLKRKG-LSVTRRS 291 (419)
T ss_pred CceEEEecC----CCchHHHHHHHHHHHHhhCCCceEE---EecCCh-----------hhHHHHHHHHHHcC-CeEEeec
Confidence 457778888 999999888888766432 23333 566443 78888888877643 4444443
Q ss_pred cc----CCCccChHHHHHHHHHHHhhhccCCCCCceEEEEEcc
Q 026289 99 AN----QSGYQRTLTVLSRVKNFLIEAGLISTESLKVMLVCGS 137 (240)
Q Consensus 99 ~~----~~~~~~t~~tl~~l~~~~~~~~~~p~~~~~~~fl~G~ 137 (240)
.. .....+-.||+-.+..-|. - .++.||=||
T Consensus 292 ~~~~~~~~tdV~l~DtmGEL~l~y~------~--adiAFVGGS 326 (419)
T COG1519 292 QGDPPFSDTDVLLGDTMGELGLLYG------I--ADIAFVGGS 326 (419)
T ss_pred CCCCCCCCCcEEEEecHhHHHHHHh------h--ccEEEECCc
Confidence 32 1223466788888887773 2 578888776
No 114
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=24.91 E-value=35 Score=30.01 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=16.9
Q ss_pred Chhhhcccccc-----------cCCceEEEEEcCCCC
Q 026289 6 PLEKLSLESKT-----------QGKTYVVLVATGSFN 31 (240)
Q Consensus 6 p~~~~~~~~~~-----------~~~~~~i~ifgGSFn 31 (240)
|.|||++.++. ..+-+.|.+.||+|.
T Consensus 118 plTNlA~ll~~~~d~l~~pel~~~kvk~lviMGG~~~ 154 (293)
T cd02652 118 PLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAFY 154 (293)
T ss_pred cHHHHHHHHHhccccccCcHHHHhhCCEEEEeCCCcc
Confidence 67777777765 123346778888873
No 115
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=24.74 E-value=2.7e+02 Score=20.49 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecC
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p 62 (240)
|+|+|+.|-..+=|.==+.-+....+.+..+++.+++.++..
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k 42 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDK 42 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETT
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecC
Confidence 567777777888888888888888888877888888766554
No 116
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=24.53 E-value=33 Score=30.31 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=20.6
Q ss_pred Chhhhcccccc-c---CCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESKT-Q---GKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~~-~---~~~~~i~ifgGSFnP 32 (240)
|.|||+++++. + ++-+.|.+.||+|..
T Consensus 130 PLTNlA~al~~~P~~~~~i~~iviMGG~~~~ 160 (312)
T cd02647 130 PLTNLARALDSDPDISSNIEEVYIMGGGVDA 160 (312)
T ss_pred cHHHHHHHHHHChHHHhhcCEEEEeCCccCC
Confidence 88999998873 2 455678999999853
No 117
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=24.39 E-value=32 Score=29.99 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=17.5
Q ss_pred Chhhhccccc-c---cCCceEEEEEcCCCCch
Q 026289 6 PLEKLSLESK-T---QGKTYVVLVATGSFNPP 33 (240)
Q Consensus 6 p~~~~~~~~~-~---~~~~~~i~ifgGSFnP~ 33 (240)
|.|||+++++ . .++-.+|.+.||+|.+.
T Consensus 128 plTNlA~al~~~P~~~~~i~~iviMGG~~~~~ 159 (312)
T PF01156_consen 128 PLTNLALALRRDPEIAKKIKRIVIMGGAFDGP 159 (312)
T ss_dssp -SHHHHHHHHHHGGHHGGEEEEEEE---SSS-
T ss_pred cchhHHHHHHhChHHHhhceEEEEECCccccC
Confidence 7889999887 2 24456799999999963
No 118
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=24.32 E-value=2.2e+02 Score=22.10 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeEEEe
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~ 57 (240)
+.+.+++.|.+++.|.....+.-+....+.+...++.++.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~ 63 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVA 63 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 4456889999999999877666666666666544666654
No 119
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=23.24 E-value=34 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred Chhhhccccc-cc---CCceEEEEEcCCCCc
Q 026289 6 PLEKLSLESK-TQ---GKTYVVLVATGSFNP 32 (240)
Q Consensus 6 p~~~~~~~~~-~~---~~~~~i~ifgGSFnP 32 (240)
|.|||+++++ .+ ++-++|.+.||+|..
T Consensus 126 PLTNlA~al~~~p~~~~~i~~iviMGG~~~~ 156 (306)
T cd02649 126 PLTNLALAYRLDPSLPQKIKRLYIMGGNREG 156 (306)
T ss_pred cHHHHHHHHHHChHHHHhcCeEEEeCCCccC
Confidence 8889998887 22 445678889999854
No 120
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=23.20 E-value=1.1e+02 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=20.8
Q ss_pred CHHHHHHHHHcCCCCCCCCcHHHHHHHHH
Q 026289 202 SSTRIRDCICRGLSIKYLTEDKVIDYIRE 230 (240)
Q Consensus 202 SST~IR~~l~~g~~i~~lvp~~V~~yI~~ 230 (240)
.-..||..++....-..-+|.+|++.+++
T Consensus 79 ~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~ 107 (110)
T PF10828_consen 79 RRESIKTALKDDPCANTAVPDAVIDSLRR 107 (110)
T ss_pred HHHHHHHHHccCccccCCCCHHHHHHHHH
Confidence 34466666665555556799999999986
No 121
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.12 E-value=59 Score=27.02 Aligned_cols=13 Identities=15% Similarity=0.237 Sum_probs=10.1
Q ss_pred cCCCCchhHHHHH
Q 026289 27 TGSFNPPTFMHLR 39 (240)
Q Consensus 27 gGSFnP~H~GHl~ 39 (240)
..-++|+|.||..
T Consensus 28 pt~y~~~HiGH~r 40 (213)
T cd00672 28 PTVYDYAHIGHAR 40 (213)
T ss_pred CccCCCcccccch
Confidence 4457889999984
No 122
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=22.77 E-value=1.7e+02 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCchhHHHHHHHHHHHHHhccCCeE
Q 026289 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYC 54 (240)
Q Consensus 18 ~~~~~i~ifgGSFnP~H~GHl~l~~~a~~~~~~~~~~ 54 (240)
++...|||.|||.- |=-.+++...+.++...+.
T Consensus 6 ~~~iiIgIaG~SgS----GKTTva~~l~~~~~~~~~~ 38 (218)
T COG0572 6 EKVIIIGIAGGSGS----GKTTVAKELSEQLGVEKVV 38 (218)
T ss_pred CceEEEEEeCCCCC----CHHHHHHHHHHHhCcCcce
Confidence 45579999999996 5578888888888755443
No 123
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=22.33 E-value=27 Score=22.97 Aligned_cols=39 Identities=10% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHcCCCCCCCCcHHHHHHHHHCCCCCCC
Q 026289 199 NQISSTRIRDCICRGLSIKYLTEDKVIDYIRESRLYLNS 237 (240)
Q Consensus 199 ~~iSST~IR~~l~~g~~i~~lvp~~V~~yI~~~~LY~~~ 237 (240)
.+.|.-.+|+.+.....-..-.-..|.+|+.++|-|...
T Consensus 25 ~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 25 LECANPELRQILQQILNECQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 467788899888764322234778999999999999754
No 124
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=21.96 E-value=5e+02 Score=22.78 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCChhhhcccccccCCceEEEEEcCCCCch--hHHHHHHHHHHHHHhccCCeEEE-eeeecCCCCccc-c-CCCCCHHHH
Q 026289 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYK-K-RGLISAEHR 78 (240)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~i~ifgGSFnP~--H~GHl~l~~~a~~~~~~~~~~vv-~~~~~p~~~~~~-k-~~~~~~~~R 78 (240)
.||-++...+.+..=+...|.|..+...|. |...+.++-.|.+..+...+.+| | |+.=+.+... + ...++...-
T Consensus 22 ~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViP-Yl~YsRQDr~~~~~e~isak~v 100 (302)
T PLN02369 22 RFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIP-YFGYARADRKTQGRESIAAKLV 100 (302)
T ss_pred ECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEee-cccccccccccCCCCCchHHHH
Confidence 377777777776554556677766655553 66777777778887777776543 3 3222222211 1 147787777
Q ss_pred HHHHHHH
Q 026289 79 INLCNLA 85 (240)
Q Consensus 79 ~~Ml~~a 85 (240)
.+|++.+
T Consensus 101 a~lL~~~ 107 (302)
T PLN02369 101 ANLITEA 107 (302)
T ss_pred HHHHHhc
Confidence 7777653
No 125
>COG5654 Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=30 Score=27.55 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=11.7
Q ss_pred EEEEcCCCCchhHHHHH
Q 026289 23 VLVATGSFNPPTFMHLR 39 (240)
Q Consensus 23 i~ifgGSFnP~H~GHl~ 39 (240)
-.+|||.||| .||-+
T Consensus 31 A~i~GGRWNp--kG~pa 45 (163)
T COG5654 31 AAIFGGRWNP--KGVPA 45 (163)
T ss_pred ceecccccCC--CCCce
Confidence 4689999999 67643
No 126
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.59 E-value=2.7e+02 Score=18.87 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCchhHHHHHHHHHHHHHhc-cCCeEEE
Q 026289 21 YVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVI 56 (240)
Q Consensus 21 ~~i~ifgGSFnP~H~GHl~l~~~a~~~~~-~~~~~vv 56 (240)
..++.|.++.+|+-..-+..+....+.++ .+++.+|
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v 39 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFV 39 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 47899999999999988888888888876 4567766
No 127
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=21.30 E-value=39 Score=29.49 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=20.2
Q ss_pred Chhhhcccccc-c---CCceEEEEEcCCCC
Q 026289 6 PLEKLSLESKT-Q---GKTYVVLVATGSFN 31 (240)
Q Consensus 6 p~~~~~~~~~~-~---~~~~~i~ifgGSFn 31 (240)
|.|||+++++. + ++-++|.+.||+|+
T Consensus 121 plTNlA~al~~~p~~~~~i~~iviMGG~~~ 150 (295)
T cd00455 121 PLTNLAMAFILDPDIKDRVKEIVIMGGAFL 150 (295)
T ss_pred chHHHHHHHHHChHHHHhCCEEEEcCCccC
Confidence 88999999873 2 34578999999983
No 128
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.16 E-value=5.4e+02 Score=22.23 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCChhhhcccccccCCceEEEEEcCCCCch--hHHHHHHHHHHHHHhccCCeEEEeeeecCCCCcc-cc-CCCCCHHHHH
Q 026289 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-KK-RGLISAEHRI 79 (240)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~~i~ifgGSFnP~--H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~~~~-~k-~~~~~~~~R~ 79 (240)
.||-++...+.+..=+...|.+..+ +.|+ |...+.++..|.+..+..++.+|--|+.=+.+.. .+ ...++...-.
T Consensus 30 ~FpdGE~~v~i~~~v~g~~v~i~~~-~~~~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a 108 (285)
T PRK00934 30 RFPDGELYVRILGEIDGEDVVIIST-TYPQDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIA 108 (285)
T ss_pred ECCCCCEEEEECCCcCCCEEEEEeC-CCCCcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHH
Confidence 3777777777764444455655554 4555 3677777778888888777754421322222221 11 2478888888
Q ss_pred HHHHHHH
Q 026289 80 NLCNLAC 86 (240)
Q Consensus 80 ~Ml~~a~ 86 (240)
+|++.+.
T Consensus 109 ~ll~~~~ 115 (285)
T PRK00934 109 KIISAYY 115 (285)
T ss_pred HHHHHhc
Confidence 8888763
No 129
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=20.73 E-value=2.4e+02 Score=29.43 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=22.3
Q ss_pred EcCCCCchhHHHHHHHHHHHHHhccCCeEEEeeeecCCC
Q 026289 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVN 64 (240)
Q Consensus 26 fgGSFnP~H~GHl~l~~~a~~~~~~~~~~vv~~~~~p~~ 64 (240)
+|-+|.=+++-|..|+- ..++++.+.|| +|.+
T Consensus 707 LGKTlQVvtflhTvL~c---~klg~ktaLvV----~PlN 738 (1567)
T KOG1015|consen 707 LGKTLQVVTFLHTVLLC---DKLGFKTALVV----CPLN 738 (1567)
T ss_pred ccceehhhHHHHHHHHh---hccCCceEEEE----cchH
Confidence 38899999999987743 22677777653 6644
Done!