BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026293
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C8L|A Chain A, Crystal Structure Of A Ftsz-Like Protein Of Unknown
Function (Npun_r1471) From Nostoc Punctiforme Pcc 73102
At 1.22 A Resolution
pdb|3C8L|B Chain B, Crystal Structure Of A Ftsz-Like Protein Of Unknown
Function (Npun_r1471) From Nostoc Punctiforme Pcc 73102
At 1.22 A Resolution
Length = 122
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Query: 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLL-IKLGV 179
K L +E G G DQHGQ+ T AA RA R+AI+ N++P + G+S ++ +++ V
Sbjct: 5 KRLIIEXGXGIDQHGQEPTIAASRAVRNAIAHNALPGV--WEVAGLSHPNEXIIEVQVAV 62
Query: 180 PHSLQQLLDIERVKSVFPYG-KILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYV 238
P+ Q + E V +V P+G K L VE GG I G + EL DKND+ I AAV V
Sbjct: 63 PYPEQ--VREEEVLAVLPFGRKTLTVE--SGGXIV-QGRAIPELNDKNDEXLIAIAAVTV 117
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
Query: 21 KDDTAGLSTTVFGYRCKEMSRTGCGSW----------SLNLPSTALKSNHPSVNILKSNT 70
+D T+G+ T GY+ E+ CG W + + + NHP +
Sbjct: 265 RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIK------ 318
Query: 71 LYSPDRLVSGSYLR 84
+P L+ G+YL+
Sbjct: 319 --AP--LIEGTYLQ 328
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI---SSNSIPA---FRRGSIPGVSFEQMK 172
P++ E+ G + G+D+ AAA R + + +S +P + + SI GV F
Sbjct: 28 PLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYP-- 85
Query: 173 LLIKLGVPHSLQQLLDIERV-KSVFPYGKILDV----EVVDG 209
L+ LGV QL D E + + V P ++ + E+ DG
Sbjct: 86 -LLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQDG 126
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 162 SIPGVSFEQMKLLIKLGVPHSLQQL 186
+IP +F Q K L+K+ +PH+L+ +
Sbjct: 240 TIPDFTFAQKKYLLKIKLPHNLKTI 264
>pdb|2WKN|A Chain A, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|B Chain B, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|C Chain C, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|D Chain D, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|E Chain E, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|F Chain F, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|G Chain G, Gamma Lactamase From Delftia Acidovorans
pdb|2WKN|H Chain H, Gamma Lactamase From Delftia Acidovorans
Length = 409
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 89 FCGQIKXXXXXXXXXXEQSGGTATNSISNP-----PM----KLLFVEMGVGYDQHGQ--- 136
FCG I+ GG A I NP PM K + G+ D+ G+
Sbjct: 262 FCGAIEMAGWVHMKVSLIKGGMAKYGIKNPIFKPSPMTPNYKDYLIFEGISVDEKGKQHY 321
Query: 137 -DVTAAAMRACRDAIS 151
DVT A +AC +AI
Sbjct: 322 LDVTVAYRQACLNAIE 337
>pdb|3BIY|A Chain A, Crystal Structure Of P300 Histone Acetyltransferase Domain
In Complex With A Bisubstrate Inhibitor, Lys-Coa
Length = 380
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 185 QLLDIERVKSVFPY--GKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNA-AVYVGY 240
+ +D + FPY + E +DG +C G+HV E G DC N VY+ Y
Sbjct: 56 RFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYG---SDCPPPNQRRVYISY 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,923,411
Number of Sequences: 62578
Number of extensions: 260890
Number of successful extensions: 579
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)