BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026293
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23057|V_PI2HT Non-structural protein V OS=Human parainfluenza 2 virus (strain
Toshiba) GN=P/V PE=2 SV=1
Length = 225
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 132 DQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIER 191
+ + V A ++ R + SN+ P +IP KL I +P+ L L
Sbjct: 55 ETKSKPVAAGPVKPRRKKVISNTTPYTIADNIP-----PEKLPINTPIPNPLLPL----- 104
Query: 192 VKSVFPYGKILDVEVVDGGLICSS--GVHVAELGDK 225
P+GK+ D+++V G + S GV +A+LG +
Sbjct: 105 ---ARPHGKMTDIDIVTGNITEGSYKGVELAKLGKQ 137
>sp|P23056|PHOSP_PI2HT Phosphoprotein OS=Human parainfluenza 2 virus (strain Toshiba)
GN=P/V PE=2 SV=1
Length = 395
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 132 DQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIER 191
+ + V A ++ R + SN+ P +IP KL I +P+ L L + R
Sbjct: 55 ETKSKPVAAGPVKPRRKKVISNTTPYTIADNIP-----PEKLPINTPIPNPL---LPLAR 106
Query: 192 VKSVFPYGKILDVEVVDGGLICSS--GVHVAELGDKN 226
P+GK+ D+++V G + S GV +A+LG +
Sbjct: 107 -----PHGKMTDIDIVTGNITEGSYKGVELAKLGKQT 138
>sp|P19847|V_PI2H Non-structural protein V OS=Human parainfluenza 2 virus GN=P/V PE=1
SV=1
Length = 225
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 132 DQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIER 191
+ + V A ++ R + SN+ P +IP KL I +P+ L L
Sbjct: 55 EAKSKPVAAGPVKPRRKKVISNTTPYTIADNIP-----PEKLPINTPIPNPLLPL----- 104
Query: 192 VKSVFPYGKILDVEVVDGGLICSS--GVHVAELGDK 225
P+GK+ D+++V G + S GV +A+LG +
Sbjct: 105 ---ARPHGKMTDIDIVTGNITEGSYKGVELAKLGKQ 137
>sp|P23055|PHOSP_PI2H Phosphoprotein OS=Human parainfluenza 2 virus GN=P/V PE=2 SV=1
Length = 395
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 132 DQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIER 191
+ + V A ++ R + SN+ P +IP KL I +P+ L L
Sbjct: 55 EAKSKPVAAGPVKPRRKKVISNTTPYTIADNIP-----PEKLPINTPIPNPLLPL----- 104
Query: 192 VKSVFPYGKILDVEVVDGGLICSS--GVHVAELGDK 225
P+GK+ D+++V G + S GV +A+LG +
Sbjct: 105 ---ARPHGKMTDIDIVTGNITEGSYKGVELAKLGKQ 137
>sp|C5D965|FABZ_GEOSW 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
OS=Geobacillus sp. (strain WCH70) GN=fabZ PE=3 SV=1
Length = 145
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 184 QQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGDKNDD 228
Q L++E +++ P GK V VDG L+C + + A LGDK +D
Sbjct: 102 QLRLEVEIIRAKGPIGKGKGVATVDGELVCETEIMFA-LGDKKND 145
>sp|B9IZ48|TIG_BACCQ Trigger factor OS=Bacillus cereus (strain Q1) GN=tig PE=3 SV=1
Length = 425
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 145 ACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFP--YGKIL 202
A + + + ++P FR+G +P FEQ + GV Q LDI + P YG+ +
Sbjct: 31 AFKKVVKTINVPGFRKGKMPRPLFEQ-----RFGVESLYQDALDI-----ILPKAYGEAI 80
Query: 203 D 203
D
Sbjct: 81 D 81
>sp|B7HQN3|TIG_BACC7 Trigger factor OS=Bacillus cereus (strain AH187) GN=tig PE=3 SV=1
Length = 425
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 145 ACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFP--YGKIL 202
A + + + ++P FR+G +P FEQ + GV Q LDI + P YG+ +
Sbjct: 31 AFKKVVKTINVPGFRKGKMPRPLFEQ-----RFGVESLYQDALDI-----ILPKAYGEAI 80
Query: 203 D 203
D
Sbjct: 81 D 81
>sp|Q72ZV3|TIG_BACC1 Trigger factor OS=Bacillus cereus (strain ATCC 10987) GN=tig PE=3
SV=1
Length = 425
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 145 ACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFP--YGKIL 202
A + + + ++P FR+G +P FEQ + GV Q LDI + P YG+ +
Sbjct: 31 AFKKVVKTINVPGFRKGKMPRPLFEQ-----RFGVESLYQDALDI-----ILPKAYGEAI 80
Query: 203 D 203
D
Sbjct: 81 D 81
>sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2
SV=1
Length = 224
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 165 GVSFEQMKLLIKLGVPHSLQQLLDIERVKSVFPYGKILDVEVVDGGLICSSGVHVAELGD 224
GV Q+K++ +G P +LQ+L E+ + Y ILD V D G I + LGD
Sbjct: 165 GVDNSQIKVICAVGAPPALQKL--SEKFPGLHVYAGILDPTVNDKGFI------IPGLGD 216
Query: 225 KNDDCY 230
D +
Sbjct: 217 AGDRSF 222
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR
PE=1 SV=1
Length = 876
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 59 NHPSVNILKSNTLYSPDRLVSGSYLRASPRFCGQIKAPATAAAMEAEQSGGTATN---SI 115
N + N+ + T SP+ + A P+F PA++ + A SG N +
Sbjct: 781 NLQTTNVQATFTNLSPNTFTDFIFQAAVPKFLQLHLDPASSNTLLASGSGAITQNLRVTN 840
Query: 116 SNPPMKLLFVEMGVGYDQHGQDV 138
S K L + M +GY +G+DV
Sbjct: 841 SQQGKKSLVMRMRIGYKLNGKDV 863
>sp|A6NLW8|DUXA_HUMAN Double homeobox protein A OS=Homo sapiens GN=DUXA PE=2 SV=1
Length = 204
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 118 PPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNS----IPAFRRGSIPGVSFEQMKL 173
P + L G DQ G + + R CR S++ I AF + PG+ + +L
Sbjct: 76 PEAETLESSQSQGQDQPGVEFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSRE-EL 134
Query: 174 LIKLGVPHSLQQLL 187
++GVP S Q+
Sbjct: 135 AKEIGVPESRVQIW 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,117,438
Number of Sequences: 539616
Number of extensions: 3605095
Number of successful extensions: 8339
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 8335
Number of HSP's gapped (non-prelim): 26
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)