BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026294
MEEHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRG
NLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQASTRER
GADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSAACTSSARSPVQHQT
HHDGEKTNTNDLSTNVSDCDASLLGIIFRSFCQIFRSCFCRKDYLFPQDRHLLQVLLPIL

High Scoring Gene Products

Symbol, full name Information P value
AT5G57230 protein from Arabidopsis thaliana 8.5e-65

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026294
        (240 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2165645 - symbol:AT5G57230 "AT5G57230" species...   660  8.5e-65   1


>TAIR|locus:2165645 [details] [associations]
            symbol:AT5G57230 "AT5G57230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR
            Gene3D:3.40.30.10 InterPro:IPR012336 SUPFAM:SSF52833 EMBL:AB019233
            EMBL:BT030035 IPI:IPI00532501 RefSeq:NP_200533.1 UniGene:At.29343
            ProteinModelPortal:Q9LVD5 SMR:Q9LVD5 PaxDb:Q9LVD5 PRIDE:Q9LVD5
            DNASU:835829 EnsemblPlants:AT5G57230.1 GeneID:835829
            KEGG:ath:AT5G57230 TAIR:At5g57230 eggNOG:NOG293840
            HOGENOM:HOG000006454 InParanoid:Q9LVD5 OMA:FMRVECP PhylomeDB:Q9LVD5
            ProtClustDB:CLSN2687397 Genevestigator:Q9LVD5 Uniprot:Q9LVD5
        Length = 160

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 115/155 (74%), Positives = 136/155 (87%)

Query:     1 MEEHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRG 60
             M + +   RM+  LRSTCKYY+GYPKDLGPSRV+HFTSEREFV +LHQGYPVVVAFTIR 
Sbjct:     1 MGDSTFLDRMLLQLRSTCKYYSGYPKDLGPSRVLHFTSEREFVQLLHQGYPVVVAFTIRS 60

Query:    61 NLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQASTRER 120
             N T+HLDR+LEEAAAEFYP++KFMRVECPKYPGFC+TRQ+ EYPFIEIFHSP+ A    +
Sbjct:    61 NYTQHLDRMLEEAAAEFYPNIKFMRVECPKYPGFCITRQKNEYPFIEIFHSPQHAGNEGK 120

Query:   121 GADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIR 155
               DPNIT+Y+VKV+P+NYD+S YGFRE+FKRQG+R
Sbjct:   121 VQDPNITRYSVKVVPYNYDMSPYGFREFFKRQGVR 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       240   0.00093  113 3  11 22  0.49    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  196 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.03u 0.08s 24.11t   Elapsed:  00:00:04
  Total cpu time:  24.03u 0.08s 24.11t   Elapsed:  00:00:04
  Start:  Fri May 10 06:16:44 2013   End:  Fri May 10 06:16:48 2013

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