BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026294
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
           Chain Aminotransferase In Complex With
           Pyridoxal-5'-Phosphate At 1.9 Angstrom.
 pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
           Chain Aminotransferase In Complex With
           Pyridoxal-5'-Phosphate At 1.9 Angstrom
          Length = 373

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 147 EYFKRQGIRHLQKYLKTNSAACTSSARSPVQHQTHHDGEKT 187
           E+ K+ G   + +     +AA  +    PV H  HHDGE T
Sbjct: 301 EWQKKAGAGEITEVFACGTAAVIT----PVSHVKHHDGEFT 337


>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
 pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
           Aminotransferase- Implications For Inhibitor Design
          Length = 372

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 147 EYFKRQGIRHLQKYLKTNSAACTSSARSPVQHQTHHDGEKT 187
           E+ K+ G   + +     +AA  +    PV H  HHDGE T
Sbjct: 300 EWQKKAGAGEITEVFACGTAAVIT----PVSHVKHHDGEFT 336


>pdb|2WVY|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
 pdb|2WVY|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
 pdb|2WVY|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
 pdb|2WW2|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
 pdb|2WW2|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
 pdb|2WW2|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
           From Bacteroides Thetaiotaomicron Vpi-5482
          Length = 737

 Score = 27.3 bits (59), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 108 IFHSPEQASTRERGADPNITKY-AVKVLPFNYDLSAYGF 145
           +FH PE  S    G +P I +  ++ V P  Y+   YGF
Sbjct: 526 VFHDPEGLSELMGGHEPMIARLDSMFVAPNTYNYGTYGF 564


>pdb|3IT8|D Chain D, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|E Chain E, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|F Chain F, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|J Chain J, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|K Chain K, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
 pdb|3IT8|L Chain L, Crystal Structure Of Tnf Alpha Complexed With A Poxvirus
           Mhc-Related Tnf Binding Protein
          Length = 324

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 29  GPSRVIHFTSEREFVHILHQGYPVVVAFTIRGNLTKHLDRVL 70
           GP    H T ++ F  + H+G+P V   T++  L K +   L
Sbjct: 115 GPLARYH-TGDKRFTKMTHKGFPKVGMLTVKNTLWKDVKAYL 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,490,424
Number of Sequences: 62578
Number of extensions: 294027
Number of successful extensions: 820
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 22
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)