Your job contains 1 sequence.
>026295
MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL
KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST
SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG
ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026295
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014210 - symbol:SEH1H "AT1G64350" species:370... 843 3.4e-84 1
DICTYBASE|DDB_G0277257 - symbol:DDB_G0277257 "Nucleoporin... 211 5.6e-24 3
UNIPROTKB|Q4FZW5 - symbol:seh1l-a "Nucleoporin seh1-A" sp... 244 1.0e-20 1
UNIPROTKB|Q5U4Y8 - symbol:seh1l "Nucleoporin seh1" specie... 244 1.0e-20 1
UNIPROTKB|Q6GNF1 - symbol:seh1l-b "Nucleoporin seh1-B" sp... 244 1.0e-20 1
UNIPROTKB|A7YY75 - symbol:SEH1L "Nucleoporin SEH1" specie... 241 2.1e-20 1
UNIPROTKB|Q96EE3 - symbol:SEH1L "Nucleoporin SEH1" specie... 239 3.8e-20 1
UNIPROTKB|Q5RAN6 - symbol:SEH1L "Nucleoporin SEH1" specie... 239 3.8e-20 1
UNIPROTKB|E1BYP7 - symbol:SEH1L "Uncharacterized protein"... 242 4.5e-20 1
UNIPROTKB|C1BK83 - symbol:seh1l "Nucleoporin seh1" specie... 238 5.5e-20 1
MGI|MGI:1919374 - symbol:Seh1l "SEH1-like (S. cerevisiae"... 233 2.0e-19 1
ZFIN|ZDB-GENE-030131-6689 - symbol:seh1l "SEH1-like (S. c... 225 1.9e-18 1
UNIPROTKB|I3LR40 - symbol:SEH1L "Uncharacterized protein"... 216 9.5e-18 1
FB|FBgn0033247 - symbol:Nup44A "Nucleoporin at 44A" speci... 205 3.2e-16 1
ASPGD|ASPL0000075365 - symbol:sec13 species:162425 "Emeri... 170 1.7e-12 1
CGD|CAL0005451 - symbol:orf19.2186 species:5476 "Candida ... 170 2.5e-12 1
UNIPROTKB|Q5A2S9 - symbol:SEH1 "Putative uncharacterized ... 170 2.5e-12 1
SGD|S000003068 - symbol:SEH1 "Component of two distinct c... 158 3.9e-11 2
POMBASE|SPAC15F9.02 - symbol:seh1 "nucleoporin Seh1" spec... 155 1.9e-09 1
TAIR|locus:2045648 - symbol:AT2G30050 "AT2G30050" species... 133 4.9e-09 2
WB|WBGene00003804 - symbol:npp-18 species:6239 "Caenorhab... 150 1.1e-08 1
CGD|CAL0004667 - symbol:SEC13 species:5476 "Candida albic... 144 4.1e-08 1
TAIR|locus:2100267 - symbol:AT3G01340 "AT3G01340" species... 139 1.9e-07 1
FB|FBgn0024509 - symbol:Sec13 "Sec13 ortholog (S. cerevis... 135 1.0e-06 1
DICTYBASE|DDB_G0292052 - symbol:sec13 "putative transport... 128 4.2e-06 1
WB|WBGene00003806 - symbol:npp-20 species:6239 "Caenorhab... 97 1.2e-05 2
UNIPROTKB|Q9N4A7 - symbol:npp-20 "Protein SEC13 homolog" ... 97 1.2e-05 2
UNIPROTKB|Q3ZCC9 - symbol:SEC13 "Protein SEC13 homolog" s... 123 2.0e-05 1
SGD|S000004198 - symbol:SEC13 "Structural component of 3 ... 120 3.8e-05 1
UNIPROTKB|E1BVC4 - symbol:SEC13 "Uncharacterized protein"... 117 0.00010 1
ZFIN|ZDB-GENE-040426-2649 - symbol:sec13 "SEC13 homolog (... 115 0.00017 1
UNIPROTKB|F1PDM3 - symbol:SEC13 "Uncharacterized protein"... 115 0.00017 1
UNIPROTKB|P55735 - symbol:SEC13 "Protein SEC13 homolog" s... 115 0.00017 1
MGI|MGI:99832 - symbol:Sec13 "SEC13 homolog (S. cerevisia... 115 0.00017 1
RGD|1359555 - symbol:Sec13 "SEC13 homolog (S. cerevisiae)... 115 0.00017 1
UNIPROTKB|E3NCB9 - symbol:Cre-npp-20 "CRE-NPP-20 protein"... 103 0.00025 2
POMBASE|SPBC215.15 - symbol:sec13 "COPII-coated vesicle c... 112 0.00033 1
UNIPROTKB|A8XJ40 - symbol:npp-20 "Protein SEC13 homolog" ... 109 0.00080 1
>TAIR|locus:2014210 [details] [associations]
symbol:SEH1H "AT1G64350" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=RCA] [GO:0043248 "proteasome assembly" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
EMBL:CP002684 GO:GO:0005635 Gene3D:2.130.10.10 SUPFAM:SSF50978
KO:K14299 EMBL:AF370222 EMBL:AY059116 IPI:IPI00519579
RefSeq:NP_564830.1 UniGene:At.25592 ProteinModelPortal:Q93VR9
SMR:Q93VR9 STRING:Q93VR9 PRIDE:Q93VR9 EnsemblPlants:AT1G64350.1
GeneID:842741 KEGG:ath:AT1G64350 TAIR:At1g64350 InParanoid:Q93VR9
OMA:WAPNIGR PhylomeDB:Q93VR9 ProtClustDB:CLSN2689020
ArrayExpress:Q93VR9 Genevestigator:Q93VR9 Uniprot:Q93VR9
Length = 326
Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
Identities = 155/240 (64%), Positives = 187/240 (77%)
Query: 1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAIL 60
M K++ATLD GTT SSWN G RLA GS +G LSI +C K +V +I+
Sbjct: 1 MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVRVSESSIV 60
Query: 61 KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
K+VW+P E+GDAVAC+C DGSL +WEE+ EDA L+WKLCKS ++ S+QVLDVQFGVS
Sbjct: 61 KIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSRK 120
Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
SLK+VAAYSDG+++V+ELL+PL LKNWQLQAEFQN IDS++ K S +SAS+SWNP KG
Sbjct: 121 SLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPMKG 180
Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
E Q SFVL FNSD+P LNSSK+WEFDEAHNRWL VAELALPED+ D VYA++WA NIGR
Sbjct: 181 EEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGR 240
>DICTYBASE|DDB_G0277257 [details] [associations]
symbol:DDB_G0277257 "Nucleoporin SEH1" species:44689
"Dictyostelium discoideum" [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 dictyBase:DDB_G0277257 Gene3D:2.130.10.10
SUPFAM:SSF50978 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
EMBL:AAFI02000019 KO:K14299 RefSeq:XP_642765.1
ProteinModelPortal:Q86K39 STRING:Q86K39 EnsemblProtists:DDB0169145
GeneID:8620954 KEGG:ddi:DDB_G0277257 InParanoid:Q86K39 OMA:TELEDHI
Uniprot:Q86K39
Length = 467
Score = 211 (79.3 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 46/162 (28%), Positives = 83/162 (51%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+RLAT S+D + + + + K H+G++ K+ W PE+G +A
Sbjct: 19 SYDFYGKRLATCSSDQKIKVWDQNDNQKWELSA--EWKAHSGSVWKLAWAHPEYGQVIAS 76
Query: 76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135
D ++ +WEE ++ +W+L + V D++F S L+L SDG++++
Sbjct: 77 CSFDRTVCIWEESEDEKGQKKWQLKAHLVDSRDSVTDIKFAPKSFGLRLATCSSDGYIRI 136
Query: 136 YELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 177
YE +D + L W + EF++ +K + S ISWNP
Sbjct: 137 YEAMDIMNLSQWTIVEEFES--------QKGT--SNCISWNP 168
Score = 70 (29.7 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL 219
V F S ISWNP + ++ S+ P + K+WE+ E +WL + L
Sbjct: 151 VEEFESQKGTSNCISWNPSSYDKP----MIAVGSNEPYI---KIWEYSETARKWLQIDTL 203
Query: 220 -ALP 222
A P
Sbjct: 204 TAYP 207
Score = 46 (21.3 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 173 ISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV 232
+ W P N G S+ L + + ++W+ ++ + + E+ +D EV+ V
Sbjct: 368 VCWAP----NMGRSYHLIATASKD--HKVRIWKLSSDKSK-MELKEVMRKDDHKSEVWRV 420
Query: 233 AW 234
W
Sbjct: 421 EW 422
Score = 38 (18.4 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 226 SDEVYAVAWALNIGR 240
S ++ V WA N+GR
Sbjct: 362 SRAIHDVCWAPNMGR 376
>UNIPROTKB|Q4FZW5 [details] [associations]
symbol:seh1l-a "Nucleoporin seh1-A" species:8355 "Xenopus
laevis" [GO:0006999 "nuclear pore organization" evidence=ISS]
[GO:0007080 "mitotic metaphase plate congression" evidence=ISS]
[GO:0031080 "nuclear pore outer ring" evidence=ISS] [GO:0051315
"attachment of spindle microtubules to kinetochore involved in
mitotic sister chromatid segregation" evidence=ISS] [GO:0000776
"kinetochore" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 EMBL:BC099027 RefSeq:NP_001089593.1
UniGene:Xl.47439 ProteinModelPortal:Q4FZW5 GeneID:734650
KEGG:xla:734650 CTD:81929 Xenbase:XB-GENE-1015667 KO:K14299
Uniprot:Q4FZW5
Length = 360
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233
>UNIPROTKB|Q5U4Y8 [details] [associations]
symbol:seh1l "Nucleoporin seh1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0006999 "nuclear pore organization"
evidence=ISS] [GO:0007080 "mitotic metaphase plate congression"
evidence=ISS] [GO:0031080 "nuclear pore outer ring" evidence=ISS]
[GO:0051315 "attachment of spindle microtubules to kinetochore
involved in mitotic sister chromatid segregation" evidence=ISS]
[GO:0000776 "kinetochore" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051028 GO:GO:0051315
GO:GO:0000777 GO:GO:0007080 GO:GO:0031080 GO:GO:0006999 CTD:81929
KO:K14299 GeneTree:ENSGT00550000074999 HOGENOM:HOG000216896
OMA:YEAPDIM OrthoDB:EOG4DJJWR EMBL:CR855721 EMBL:BC084902
RefSeq:NP_001011152.1 UniGene:Str.2999 ProteinModelPortal:Q5U4Y8
STRING:Q5U4Y8 Ensembl:ENSXETT00000055056 GeneID:496570
KEGG:xtr:496570 Xenbase:XB-GENE-1015661 InParanoid:Q5U4Y8
Bgee:Q5U4Y8 Uniprot:Q5U4Y8
Length = 360
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233
>UNIPROTKB|Q6GNF1 [details] [associations]
symbol:seh1l-b "Nucleoporin seh1-B" species:8355 "Xenopus
laevis" [GO:0006999 "nuclear pore organization" evidence=ISS]
[GO:0007080 "mitotic metaphase plate congression" evidence=ISS]
[GO:0031080 "nuclear pore outer ring" evidence=ISS] [GO:0051315
"attachment of spindle microtubules to kinetochore involved in
mitotic sister chromatid segregation" evidence=ISS] [GO:0000776
"kinetochore" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 EMBL:BC073561 RefSeq:NP_001085936.1
UniGene:Xl.3340 ProteinModelPortal:Q6GNF1 GeneID:444365
KEGG:xla:444365 Uniprot:Q6GNF1
Length = 360
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 69/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233
>UNIPROTKB|A7YY75 [details] [associations]
symbol:SEH1L "Nucleoporin SEH1" species:9913 "Bos taurus"
[GO:0000776 "kinetochore" evidence=ISS] [GO:0007080 "mitotic
metaphase plate congression" evidence=ISS] [GO:0051315 "attachment
of spindle microtubules to kinetochore involved in mitotic sister
chromatid segregation" evidence=ISS] [GO:0031080 "nuclear pore
outer ring" evidence=ISS] [GO:0006999 "nuclear pore organization"
evidence=ISS] [GO:0000777 "condensed chromosome kinetochore"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 CTD:81929 KO:K14299 EMBL:BC151606
IPI:IPI00839665 RefSeq:NP_001096559.1 UniGene:Bt.103393
ProteinModelPortal:A7YY75 STRING:A7YY75 Ensembl:ENSBTAT00000049050
GeneID:506509 KEGG:bta:506509 eggNOG:NOG257251
GeneTree:ENSGT00550000074999 HOGENOM:HOG000216896 OMA:YEAPDIM
NextBio:20867635 ArrayExpress:A7YY75 Uniprot:A7YY75
Length = 360
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 69/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE L +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLLTV--TDPVHDIAFAPNLGR 233
>UNIPROTKB|Q96EE3 [details] [associations]
symbol:SEH1L "Nucleoporin SEH1" species:9606 "Homo sapiens"
[GO:0015031 "protein transport" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0006999 "nuclear pore organization" evidence=IMP] [GO:0031080
"nuclear pore outer ring" evidence=NAS;IDA] [GO:0051315 "attachment
of spindle microtubules to kinetochore involved in mitotic sister
chromatid segregation" evidence=IMP] [GO:0007080 "mitotic metaphase
plate congression" evidence=IMP] [GO:0000776 "kinetochore"
evidence=IDA] [GO:0000087 "M phase of mitotic cell cycle"
evidence=TAS] [GO:0000236 "mitotic prometaphase" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0005635 "nuclear
envelope" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0005975 "carbohydrate metabolic process" evidence=TAS]
[GO:0008645 "hexose transport" evidence=TAS] [GO:0010827
"regulation of glucose transport" evidence=TAS] [GO:0015758
"glucose transport" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] [GO:0055085 "transmembrane transport" evidence=TAS]
Reactome:REACT_111217 Reactome:REACT_15518 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005829 Reactome:REACT_116125
Reactome:REACT_6900 Reactome:REACT_115566 GO:GO:0016032
Reactome:REACT_21300 GO:GO:0051301 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0044281 GO:GO:0015031
GO:GO:0005975 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0019221 GO:GO:0015758 GO:GO:0010827 GO:GO:0055085
GO:GO:0051028 GO:GO:0051315 GO:GO:0000236 GO:GO:0000777
GO:GO:0007080 GO:GO:0031080 GO:GO:0006999 CTD:81929 KO:K14299
HOGENOM:HOG000216896 OMA:YEAPDIM EMBL:AF255625 EMBL:AF431970
EMBL:AF514996 EMBL:AF136976 EMBL:AK056940 EMBL:AK291226
EMBL:BC012430 IPI:IPI00185533 IPI:IPI00220609 RefSeq:NP_001013455.1
RefSeq:NP_112493.2 UniGene:Hs.301048 ProteinModelPortal:Q96EE3
SMR:Q96EE3 IntAct:Q96EE3 STRING:Q96EE3 DMDM:257051064 PaxDb:Q96EE3
PRIDE:Q96EE3 DNASU:81929 Ensembl:ENST00000262124
Ensembl:ENST00000399892 GeneID:81929 KEGG:hsa:81929 UCSC:uc002krq.3
UCSC:uc002krr.3 GeneCards:GC18P012947 HGNC:HGNC:30379 HPA:HPA039964
MIM:609263 neXtProt:NX_Q96EE3 PharmGKB:PA134912135
InParanoid:Q96EE3 OrthoDB:EOG4DJJWR PhylomeDB:Q96EE3 ChiTaRS:SEH1L
GenomeRNAi:81929 NextBio:72265 Bgee:Q96EE3 CleanEx:HS_SEH1L
Genevestigator:Q96EE3 GermOnline:ENSG00000085415 Uniprot:Q96EE3
Length = 360
Score = 239 (89.2 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 68/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233
>UNIPROTKB|Q5RAN6 [details] [associations]
symbol:SEH1L "Nucleoporin SEH1" species:9601 "Pongo abelii"
[GO:0006999 "nuclear pore organization" evidence=ISS] [GO:0007080
"mitotic metaphase plate congression" evidence=ISS] [GO:0031080
"nuclear pore outer ring" evidence=ISS] [GO:0051315 "attachment of
spindle microtubules to kinetochore involved in mitotic sister
chromatid segregation" evidence=ISS] [GO:0000776 "kinetochore"
evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 CTD:81929 KO:K14299
HOGENOM:HOG000216896 EMBL:CR858979 RefSeq:NP_001125688.1
UniGene:Pab.10091 ProteinModelPortal:Q5RAN6 PRIDE:Q5RAN6
GeneID:100172610 KEGG:pon:100172610 InParanoid:Q5RAN6
Uniprot:Q5RAN6
Length = 360
Score = 239 (89.2 bits), Expect = 3.8e-20, P = 3.8e-20
Identities = 68/231 (29%), Positives = 110/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233
>UNIPROTKB|E1BYP7 [details] [associations]
symbol:SEH1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000776 "kinetochore" evidence=IEA] [GO:0006999
"nuclear pore organization" evidence=IEA] [GO:0007080 "mitotic
metaphase plate congression" evidence=IEA] [GO:0051315 "attachment
of spindle microtubules to kinetochore involved in mitotic sister
chromatid segregation" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0000776 Gene3D:2.130.10.10
SUPFAM:SSF50978 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0051315
GO:GO:0007080 GO:GO:0006999 CTD:81929 KO:K14299
GeneTree:ENSGT00550000074999 OMA:YEAPDIM EMBL:AADN02058864
IPI:IPI00575685 RefSeq:XP_003640847.1 Ensembl:ENSGALT00000022497
GeneID:100859886 KEGG:gga:100859886 Uniprot:E1BYP7
Length = 419
Score = 242 (90.2 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 68/231 (29%), Positives = 112/231 (48%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ ++P + + +++E++E + R AE + +D V+ +A+A N+GR
Sbjct: 186 SDDNSPNILAKVQIYEYNE-NTRKYAKAEALMTV--TDPVHDIAFAPNLGR 233
>UNIPROTKB|C1BK83 [details] [associations]
symbol:seh1l "Nucleoporin seh1" species:8014 "Osmerus
mordax" [GO:0006999 "nuclear pore organization" evidence=ISS]
[GO:0007080 "mitotic metaphase plate congression" evidence=ISS]
[GO:0031080 "nuclear pore outer ring" evidence=ISS] [GO:0051315
"attachment of spindle microtubules to kinetochore involved in
mitotic sister chromatid segregation" evidence=ISS] [GO:0000776
"kinetochore" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0051301 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 EMBL:BT075012 ProteinModelPortal:C1BK83
Uniprot:C1BK83
Length = 364
Score = 238 (88.8 bits), Expect = 5.5e-20, P = 5.5e-20
Identities = 67/231 (29%), Positives = 108/231 (46%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV ++ Q W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K SC + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185
Query: 191 FN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ S+T +++E+ E ++ V L +D V+ +A+A N+GR
Sbjct: 186 SDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGR 233
>MGI|MGI:1919374 [details] [associations]
symbol:Seh1l "SEH1-like (S. cerevisiae" species:10090 "Mus
musculus" [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0006999 "nuclear pore organization" evidence=ISO] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0007080
"mitotic metaphase plate congression" evidence=ISO] [GO:0015031
"protein transport" evidence=IEA] [GO:0031080 "nuclear pore outer
ring" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0051315 "attachment
of spindle microtubules to kinetochore involved in mitotic sister
chromatid segregation" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1919374 GO:GO:0051301
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 EMBL:CH466528
GO:GO:0015031 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0051028 GO:GO:0051315 GO:GO:0000777 GO:GO:0007080
GO:GO:0031080 GO:GO:0006999 CTD:81929 KO:K14299
GeneTree:ENSGT00550000074999 HOGENOM:HOG000216896 OMA:YEAPDIM
OrthoDB:EOG4DJJWR ChiTaRS:SEH1L EMBL:AK011330 EMBL:AK088835
EMBL:AK143727 EMBL:AK166573 EMBL:AK169231 EMBL:AK169388
EMBL:AK170591 EMBL:BC027244 IPI:IPI00315517 IPI:IPI00406514
RefSeq:NP_001034177.1 RefSeq:NP_082388.1 UniGene:Mm.307315
ProteinModelPortal:Q8R2U0 SMR:Q8R2U0 STRING:Q8R2U0
PhosphoSite:Q8R2U0 PaxDb:Q8R2U0 PRIDE:Q8R2U0
Ensembl:ENSMUST00000025421 GeneID:72124 KEGG:mmu:72124
UCSC:uc008fmx.1 UCSC:uc008fmy.1 InParanoid:Q3UP79 NextBio:335500
Bgee:Q8R2U0 Genevestigator:Q8R2U0 Uniprot:Q8R2U0
Length = 360
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 68/231 (29%), Positives = 109/231 (47%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV E L+ W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V+VYE D + L W LQ E + C S ISWNP +G
Sbjct: 137 GIVRVYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVG 185
Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
+ +P + +++E++E + R AE + +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNSMAKVQIFEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233
>ZFIN|ZDB-GENE-030131-6689 [details] [associations]
symbol:seh1l "SEH1-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006999 "nuclear pore organization" evidence=ISS]
[GO:0051315 "attachment of spindle microtubules to kinetochore
involved in mitotic sister chromatid segregation" evidence=ISS]
[GO:0000776 "kinetochore" evidence=IEA;ISS] [GO:0007080 "mitotic
metaphase plate congression" evidence=ISS] [GO:0031080 "nuclear
pore outer ring" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
ZFIN:ZDB-GENE-030131-6689 GO:GO:0051301 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031 InterPro:IPR020472
PRINTS:PR00320 GO:GO:0051028 GO:GO:0051315 GO:GO:0000777
GO:GO:0007080 GO:GO:0031080 GO:GO:0006999 EMBL:BX294130 CTD:81929
KO:K14299 eggNOG:NOG257251 GeneTree:ENSGT00550000074999
HOGENOM:HOG000216896 EMBL:AY398414 IPI:IPI00499010
RefSeq:NP_956217.2 UniGene:Dr.20191 ProteinModelPortal:Q6TGU2
STRING:Q6TGU2 Ensembl:ENSDART00000013865 GeneID:334749
KEGG:dre:334749 InParanoid:Q6TGU2 NextBio:20810534
ArrayExpress:Q6TGU2 Bgee:Q6TGU2 Uniprot:Q6TGU2
Length = 364
Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 69/232 (29%), Positives = 108/232 (46%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
S+++ G+R+AT S+D ++ + T + KT H+G++ +V W PEFG +A
Sbjct: 19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76
Query: 76 ICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEEIV ++ Q W + + T V DV+F L L +D
Sbjct: 77 CSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSAD 136
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G V++YE D + L W LQ E K +C + ISWNP +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG 185
Query: 191 FNSDTPQLNSSKVW--EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
D+ S KV E++E + R AE + +D V+ +A+A N+GR
Sbjct: 186 -GDDSNGAYSGKVQIHEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233
>UNIPROTKB|I3LR40 [details] [associations]
symbol:SEH1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051315 "attachment of spindle microtubules to
kinetochore involved in mitotic sister chromatid segregation"
evidence=IEA] [GO:0007080 "mitotic metaphase plate congression"
evidence=IEA] [GO:0006999 "nuclear pore organization" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0000776 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0051315 GO:GO:0007080 GO:GO:0006999
GeneTree:ENSGT00550000074999 OMA:YEAPDIM EMBL:FP565312
Ensembl:ENSSSCT00000023051 Uniprot:I3LR40
Length = 324
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 61/199 (30%), Positives = 94/199 (47%)
Query: 48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV-EDAQPLQ----WKLCKS 102
C K H+G++ +V W PEFG +A D + +WEEIV E L+ W +
Sbjct: 12 CTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTT 71
Query: 103 FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162
+ T V DV+F L L +DG V++YE D + L W LQ E V+
Sbjct: 72 LVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHE-------VSC 124
Query: 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSS-KVWEFDEAHNRWLPVAELAL 221
K SC + ISWNP +G + +P + +++E++E + R AE +
Sbjct: 125 --KLSC--SCISWNPSSSRAHPPMIAVGSDDGSPNAMAKVQIFEYNE-NTRKYAKAETLM 179
Query: 222 PEDRSDEVYAVAWALNIGR 240
+D V+ +A+A N+GR
Sbjct: 180 TV--TDPVHDIAFAPNLGR 196
>FB|FBgn0033247 [details] [associations]
symbol:Nup44A "Nucleoporin at 44A" species:7227 "Drosophila
melanogaster" [GO:0005643 "nuclear pore" evidence=ISS] [GO:0017056
"structural constituent of nuclear pore" evidence=ISS] [GO:0007184
"SMAD protein import into nucleus" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0051445 "regulation of meiotic cell
cycle" evidence=IMP] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:AE013599 GO:GO:0007346
GO:GO:0005635 GO:GO:0043234 Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0048477
GO:GO:0051445 KO:K14299 GeneTree:ENSGT00550000074999 OMA:YEAPDIM
EMBL:AY060480 RefSeq:NP_610343.1 RefSeq:NP_724637.1
RefSeq:NP_724638.1 UniGene:Dm.3965 SMR:Q7K2X8 IntAct:Q7K2X8
STRING:Q7K2X8 EnsemblMetazoa:FBtr0088860 EnsemblMetazoa:FBtr0088861
EnsemblMetazoa:FBtr0088862 GeneID:35762 KEGG:dme:Dmel_CG8722
UCSC:CG8722-RA CTD:35762 FlyBase:FBgn0033247 InParanoid:Q7K2X8
OrthoDB:EOG42V6XT GenomeRNAi:35762 NextBio:795094 Uniprot:Q7K2X8
Length = 354
Score = 205 (77.2 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 68/230 (29%), Positives = 104/230 (45%)
Query: 17 WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
++Y G+R+AT S+D T+ I T + K H+G+I +V W PEFG VA
Sbjct: 20 FDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKA--HSGSIWRVSWAHPEFGQVVATC 77
Query: 77 CSDGSLLLWEEIVEDA-----QPLQ-WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
D + +WEE++ + P + W + + T V DV+F L L A +D
Sbjct: 78 SFDRTASVWEEVIGEKVSSTNTPTRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASAD 137
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
G +++YE D + L W +Q E N + SC+S WN + +L
Sbjct: 138 GIIRIYEAPDIMNLSQWPVQHEISNKLP-------LSCLS----WNTS---TYMVTQLLA 183
Query: 191 FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
SD + KV+ F + N V ++ D +D V VA+A N GR
Sbjct: 184 AGSDEAATPTGKVFLFAYSENSRKCV-KIDTVNDITDPVTDVAFAPNAGR 232
>ASPGD|ASPL0000075365 [details] [associations]
symbol:sec13 species:162425 "Emericella nidulans"
[GO:0005643 "nuclear pore" evidence=IDA] [GO:0031081 "nuclear pore
distribution" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0090114 "COPII-coated vesicle
budding" evidence=IEA] [GO:0043547 "positive regulation of GTPase
activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030127 "COPII vesicle coat" evidence=IEA]
[GO:0031080 "nuclear pore outer ring" evidence=IEA] [GO:0035859
"Seh1-associated complex" evidence=IEA] [GO:0005198 "structural
molecule activity" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0012507 GO:GO:0016192
Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031
eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0005643
EMBL:BN001303 GO:GO:0051028 EMBL:AACD01000075 HOGENOM:HOG000216895
KO:K14004 OMA:IKLWKEE RefSeq:XP_661921.1 ProteinModelPortal:Q5B563
SMR:Q5B563 STRING:Q5B563 EnsemblFungi:CADANIAT00006147
GeneID:2872114 KEGG:ani:AN4317.2 OrthoDB:EOG4QNR53 Uniprot:Q5B563
Length = 309
Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 65/227 (28%), Positives = 97/227 (42%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G+RLAT S+D T+ I K H G + V W P+FG +A
Sbjct: 22 DYYGRRLATCSSDKTIKIFEIEGDTHKLVET---LKGHEGPVWCVEWAHPKFGTILASSS 78
Query: 78 SDGSLLLWEEIVEDAQ-PL---QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
DG +L+W E + + P+ W F + V + + T L A SDGHV
Sbjct: 79 YDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHV 138
Query: 134 KVYELLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGF 191
V E D +W Q + ++S++ + A+ + +S NP G Q FV G
Sbjct: 139 SVLEFRD----NSWTHQIFHAHGMGVNSIS-WAPAASPGSLVSSNP--GIGQQRRFVTG- 190
Query: 192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238
SD N K+W+++ + L E SD V VAW+ +I
Sbjct: 191 GSD----NLLKIWDYNPETKTYNATQTL---EGHSDWVRDVAWSPSI 230
>CGD|CAL0005451 [details] [associations]
symbol:orf19.2186 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0000329 "fungal-type vacuole membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0035859
"Seh1-associated complex" evidence=IEA] [GO:0031080 "nuclear pore
outer ring" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 CGD:CAL0005451 Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 EMBL:AACQ01000076 EMBL:AACQ01000075 KO:K14299
RefSeq:XP_715969.1 RefSeq:XP_716027.1 ProteinModelPortal:Q5A2S9
STRING:Q5A2S9 GeneID:3642290 GeneID:3642391 KEGG:cal:CaO19.2186
KEGG:cal:CaO19.9732 Uniprot:Q5A2S9
Length = 347
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 62/234 (26%), Positives = 105/234 (44%)
Query: 17 WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDA-VAC 75
+++ G+ +AT S+D + + N K H +I K+ W PEF + +
Sbjct: 27 YDFYGKHIATVSSDQHIKVFDLDSATSSWIL-NDSWKAHDSSIAKISWAHPEFSSSKIIA 85
Query: 76 ICS-DGSLLLWEEIVEDAQP---LQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
CS D ++ +W+E D P +W KL + + DV F + KL SD
Sbjct: 86 SCSYDRTVKIWQE-QPDEMPGSGRRWLKLATLATESYGPIYDVCFAPNHLGFKLGCVGSD 144
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL- 189
G ++YE L+P L W L E AI + ++ K+ S + W P K V+
Sbjct: 145 GIFRIYESLEPNDLTAWVLTTEI--AILNSSLPAKSLQSSFGVEWCPSKFTKTEKFIVVA 202
Query: 190 ---GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
GF + Q SS + A ++++ + +L PE + + +V+WA ++GR
Sbjct: 203 LDQGFVYGSVQKESSGE---ESASDKYVKICDL--PE-HNGLIRSVSWAPSMGR 250
>UNIPROTKB|Q5A2S9 [details] [associations]
symbol:SEH1 "Putative uncharacterized protein SEH1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 CGD:CAL0005451 Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:COG2319 EMBL:AACQ01000076 EMBL:AACQ01000075 KO:K14299
RefSeq:XP_715969.1 RefSeq:XP_716027.1 ProteinModelPortal:Q5A2S9
STRING:Q5A2S9 GeneID:3642290 GeneID:3642391 KEGG:cal:CaO19.2186
KEGG:cal:CaO19.9732 Uniprot:Q5A2S9
Length = 347
Score = 170 (64.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 62/234 (26%), Positives = 105/234 (44%)
Query: 17 WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDA-VAC 75
+++ G+ +AT S+D + + N K H +I K+ W PEF + +
Sbjct: 27 YDFYGKHIATVSSDQHIKVFDLDSATSSWIL-NDSWKAHDSSIAKISWAHPEFSSSKIIA 85
Query: 76 ICS-DGSLLLWEEIVEDAQP---LQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
CS D ++ +W+E D P +W KL + + DV F + KL SD
Sbjct: 86 SCSYDRTVKIWQE-QPDEMPGSGRRWLKLATLATESYGPIYDVCFAPNHLGFKLGCVGSD 144
Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL- 189
G ++YE L+P L W L E AI + ++ K+ S + W P K V+
Sbjct: 145 GIFRIYESLEPNDLTAWVLTTEI--AILNSSLPAKSLQSSFGVEWCPSKFTKTEKFIVVA 202
Query: 190 ---GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
GF + Q SS + A ++++ + +L PE + + +V+WA ++GR
Sbjct: 203 LDQGFVYGSVQKESSGE---ESASDKYVKICDL--PE-HNGLIRSVSWAPSMGR 250
>SGD|S000003068 [details] [associations]
symbol:SEH1 "Component of two distinct complexes"
species:4932 "Saccharomyces cerevisiae" [GO:0005773 "vacuole"
evidence=IEA] [GO:0035859 "Seh1-associated complex" evidence=IDA]
[GO:0031080 "nuclear pore outer ring" evidence=IDA] [GO:0017056
"structural constituent of nuclear pore" evidence=IC] [GO:0005643
"nuclear pore" evidence=IEA;IDA] [GO:0006913 "nucleocytoplasmic
transport" evidence=IC] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000329 "fungal-type vacuole membrane"
evidence=IDA] [GO:0016021 "integral to membrane" evidence=ISM]
[GO:0005774 "vacuolar membrane" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SGD:S000003068 GO:GO:0005886
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 EMBL:BK006941
GO:GO:0015031 eggNOG:COG2319 GO:GO:0006913 GO:GO:0000329
GO:GO:0051028 TCDB:9.A.14.1.1 GO:GO:0031080 GO:GO:0035859
GO:GO:0017056 PDB:3EWE PDB:3F3F PDB:3F3G PDB:3F3P PDBsum:3EWE
PDBsum:3F3F PDBsum:3F3G PDBsum:3F3P KO:K14299
GeneTree:ENSGT00550000074999 HOGENOM:HOG000216896 OMA:YEAPDIM
OrthoDB:EOG418FX3 EMBL:X90994 EMBL:Z72622 EMBL:AY558497 PIR:S62137
RefSeq:NP_011415.1 ProteinModelPortal:P53011 SMR:P53011
DIP:DIP-4193N IntAct:P53011 MINT:MINT-547303 STRING:P53011
PaxDb:P53011 PeptideAtlas:P53011 EnsemblFungi:YGL100W GeneID:852778
KEGG:sce:YGL100W CYGD:YGL100w EvolutionaryTrace:P53011
NextBio:972254 Genevestigator:P53011 GermOnline:YGL100W
Uniprot:P53011
Length = 349
Score = 158 (60.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 43/168 (25%), Positives = 83/168 (49%)
Query: 17 WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
+++ G+ +AT S+D + + + + H +I+ + W PE+G +A
Sbjct: 17 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASA 75
Query: 77 CSDGSLLLWEEIV--EDAQPLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
D ++ LWEE E+ +W KLC +S + + V+F + LKL +DG +
Sbjct: 76 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS-LYSVKFAPAHLGLKLACLGNDGIL 134
Query: 134 KVYELLDPLILKNWQLQAEFQN-AIDSVTMFRKASCISASIS-WNPQK 179
++Y+ L+P L++W L +E + +I + C+S S ++P+K
Sbjct: 135 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 182
Score = 41 (19.5 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 214 LPVAELALPEDRSDEVYAVAWAL 236
L V L+ +D + EV++V+W L
Sbjct: 292 LQVELLSEHDDHNGEVWSVSWNL 314
>POMBASE|SPAC15F9.02 [details] [associations]
symbol:seh1 "nucleoporin Seh1" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005643
"nuclear pore" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006407 "rRNA export from nucleus" evidence=ISO] [GO:0015031
"protein transport" evidence=IEA] [GO:0031080 "nuclear pore outer
ring" evidence=IDA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 PomBase:SPAC15F9.02 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031 eggNOG:COG2319
GO:GO:0051028 GO:GO:0031080 GO:GO:0006407 KO:K14299
HOGENOM:HOG000216896 OMA:YEAPDIM PIR:T37727 RefSeq:NP_593751.1
ProteinModelPortal:Q10099 IntAct:Q10099 STRING:Q10099
EnsemblFungi:SPAC15F9.02.1 GeneID:2541682 KEGG:spo:SPAC15F9.02
OrthoDB:EOG418FX3 NextBio:20802775 Uniprot:Q10099
Length = 339
Score = 155 (59.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 54/229 (23%), Positives = 107/229 (46%)
Query: 16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAG--AILKVVWVPPEFGDAV 73
++++ G+R+ + S D + + T + ++ AG ++++V W P FG +
Sbjct: 21 TYDFYGRRMVSCSADQRVKVYDFNDDTE---TWAITSEWRAGDASLMRVAWAHPSFGQVL 77
Query: 74 ACICS-DGSLLLWEEIVEDAQPLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG 131
A +CS D + ++EE ++ + W ++ K ++ S VLD+ F KL A +D
Sbjct: 78 A-VCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSA-VLDISFCPFQHGCKLAAVSADA 135
Query: 132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK-ASCISASISWNPQKGENQGSSFVLG 190
+++YE ++P L W L E + + A C++ W P + Q +G
Sbjct: 136 TLRIYEAMEPGNLTYWTLMNEIALMPSPPSRNEQPAFCVN----WCPSRWREQ--YIAVG 189
Query: 191 FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
+N + +++ +H +W VAEL P +D + + WA ++G
Sbjct: 190 C------MNDAYIYK-QNSHGKWKKVAEL--P-GHTDLIRDICWAPSMG 228
>TAIR|locus:2045648 [details] [associations]
symbol:AT2G30050 "AT2G30050" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005834 "heterotrimeric
G-protein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005643 "nuclear pore"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0006900
"membrane budding" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0005643 EMBL:AC004680 EMBL:AC004165 UniGene:At.25577
HOGENOM:HOG000216895 KO:K14004 OMA:IKLWKEE EMBL:AF412112
EMBL:AY124848 IPI:IPI00529872 PIR:T00593 RefSeq:NP_180566.1
UniGene:At.74333 ProteinModelPortal:O64740 SMR:O64740 IntAct:O64740
STRING:O64740 PaxDb:O64740 PRIDE:O64740 ProMEX:O64740
EnsemblPlants:AT2G30050.1 GeneID:817556 KEGG:ath:AT2G30050
TAIR:At2g30050 InParanoid:O64740 PhylomeDB:O64740
ProtClustDB:CLSN2683847 ArrayExpress:O64740 Genevestigator:O64740
Uniprot:O64740
Length = 302
Score = 133 (51.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 32/119 (26%), Positives = 53/119 (44%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G+R+AT S+D T+ I L H G + +V W P++G +A
Sbjct: 20 DYYGKRIATASSDCTIKITGVSNNGGSQQLATLTG--HRGPVWEVAWAHPKYGSILASCS 77
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136
DG ++LW+E ++ QW F + V + + L L SDG++ V+
Sbjct: 78 YDGQVILWKEGNQN----QWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVF 132
Score = 55 (24.4 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 199 NSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N+ KVW+ A+ W AL + +D V VAWA N+G
Sbjct: 186 NTVKVWKL--ANGSWKMDCFPAL-QKHTDWVRDVAWAPNLG 223
>WB|WBGene00003804 [details] [associations]
symbol:npp-18 species:6239 "Caenorhabditis elegans"
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0015031
eggNOG:COG2319 GO:GO:0005643 GO:GO:0045132 GO:GO:0051028 KO:K14299
GeneTree:ENSGT00550000074999 HOGENOM:HOG000216896 OMA:YEAPDIM
EMBL:AL021481 PIR:T26842 RefSeq:NP_499740.1
ProteinModelPortal:O45933 SMR:O45933 STRING:O45933 PaxDb:O45933
EnsemblMetazoa:Y43F4B.4.1 EnsemblMetazoa:Y43F4B.4.2 GeneID:176748
KEGG:cel:CELE_Y43F4B.4 UCSC:Y43F4B.4 CTD:176748 WormBase:Y43F4B.4
InParanoid:O45933 NextBio:893842 Uniprot:O45933
Length = 363
Score = 150 (57.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/160 (27%), Positives = 71/160 (44%)
Query: 21 GQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80
G+R+AT ++D T++I + + K H GA+ +V+W PEFG VA D
Sbjct: 29 GRRMATCASDMTMAIWDRKPDGNWRRSAHWKC--HGGAVWRVIWAHPEFGQIVATCSYDR 86
Query: 81 SLLLWEE-IVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134
++++WEE IV + L QW + V D+ F L + + G V+
Sbjct: 87 TIVIWEEQIVRSEKDLKQKESQWIRRTIISDNRSDVTDICFSPRHLGLMMASCNVLGTVR 146
Query: 135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS 174
+YE D + W L E Q + C++ S+S
Sbjct: 147 IYEAPDIVDASRWNLIHELQ------AFHTRCGCVTWSLS 180
>CGD|CAL0004667 [details] [associations]
symbol:SEC13 species:5476 "Candida albicans" [GO:0005198
"structural molecule activity" evidence=IEA] [GO:0030127 "COPII
vesicle coat" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031080 "nuclear pore outer ring" evidence=IEA] [GO:0035859
"Seh1-associated complex" evidence=IEA] [GO:0031081 "nuclear pore
distribution" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IEA] [GO:0043547 "positive regulation
of GTPase activity" evidence=IEA] [GO:0090114 "COPII-coated vesicle
budding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0012507 GO:GO:0016192
Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031
eggNOG:COG2319 GO:GO:0005643 GO:GO:0051028 EMBL:AACQ01000027
EMBL:AACQ01000026 KO:K14004 RefSeq:XP_720011.1 RefSeq:XP_720143.1
ProteinModelPortal:Q5AEF2 SMR:Q5AEF2 STRING:Q5AEF2 GeneID:3638207
GeneID:3638425 KEGG:cal:CaO19.316 KEGG:cal:CaO19.7948
Uniprot:Q5AEF2
Length = 298
Score = 144 (55.7 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 52/202 (25%), Positives = 82/202 (40%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G+RLAT S+D T+ I L H G + +V W P+FG +A
Sbjct: 18 DYYGKRLATCSSDKTIKIFDLDGTDNYKLITTLTG--HEGPVWQVSWAHPKFGSILASCS 75
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
DG L+W+E E Q W + V V + L+ SDG V V +
Sbjct: 76 YDGKALIWKEQPETQQ---WSIIAEHTVHQASVNSVSWAPHELGAVLLCTSSDGKVSVVD 132
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ 197
D + A A +S T ++ S + Q+ ++ SD
Sbjct: 133 FNDDGTTSHVIFDAHAIGA-NSATWAPVSTSSKDSAALKQQRR-------IVSCGSD--- 181
Query: 198 LNSSKVWEFDEAHNRWLPVAEL 219
N +K+W++D A+N ++ A+L
Sbjct: 182 -NLAKIWKYDAANNTYVEEAKL 202
>TAIR|locus:2100267 [details] [associations]
symbol:AT3G01340 "AT3G01340" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006886 "intracellular
protein transport" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006900 "membrane budding" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005829 EMBL:CP002686 Gene3D:2.130.10.10 SUPFAM:SSF50978
InterPro:IPR020472 PRINTS:PR00320 EMBL:AC010676
HOGENOM:HOG000216895 KO:K14004 ProtClustDB:CLSN2683847
EMBL:AF370262 EMBL:AY063079 IPI:IPI00528696 RefSeq:NP_001030616.1
RefSeq:NP_186783.1 UniGene:At.18565 ProteinModelPortal:Q9SRI1
SMR:Q9SRI1 IntAct:Q9SRI1 STRING:Q9SRI1 PRIDE:Q9SRI1 ProMEX:Q9SRI1
DNASU:821216 EnsemblPlants:AT3G01340.1 EnsemblPlants:AT3G01340.2
GeneID:821216 KEGG:ath:AT3G01340 TAIR:At3g01340 InParanoid:Q9SRI1
OMA:KIDQAHP PhylomeDB:Q9SRI1 ArrayExpress:Q9SRI1
Genevestigator:Q9SRI1 Uniprot:Q9SRI1
Length = 302
Score = 139 (54.0 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G+R+AT S+D T+ I L H G + +V W P+FG +A
Sbjct: 20 DYYGKRVATASSDCTIKITGVSNSGGSQHLATLTG--HRGPVWQVAWAHPKFGSLLASCS 77
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136
DG ++LW+E ++ QW F V + + L L SDG++ V+
Sbjct: 78 YDGQIILWKEGNQN----QWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVF 132
Score = 123 (48.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 50/192 (26%), Positives = 76/192 (39%)
Query: 55 HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQ 114
H G + +V W P+FG +A DG ++LW+E ++ QW F V +
Sbjct: 55 HRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQN----QWTQAHVFTDHKVSVNSIA 110
Query: 115 FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA-SI 173
+ L L SDG++ V+ A D+ T +A + S+
Sbjct: 111 WAPHELGLSLACGASDGNISVFS-------------ARADGGWDT-TKIDQAHPVGVTSV 156
Query: 174 SWNPQKGENQGSSFVLGFNSDTPQLNSS------KVWEFDEAHNRWLPVAELALPEDRSD 227
SW P G+ G +L S KVW+F ++ W AL + +D
Sbjct: 157 SWAP--ATEPGALVSSGMIDPVYKLASGGCDSTVKVWKF--SNGSWKMDCFPALNK-HTD 211
Query: 228 EVYAVAWALNIG 239
V VAWA N+G
Sbjct: 212 WVRDVAWAPNLG 223
>FB|FBgn0024509 [details] [associations]
symbol:Sec13 "Sec13 ortholog (S. cerevisiae)" species:7227
"Drosophila melanogaster" [GO:0006900 "membrane budding"
evidence=ISS] [GO:0008363 "larval chitin-based cuticle development"
evidence=IMP] [GO:0035293 "chitin-based larval cuticle pattern
formation" evidence=IMP] [GO:0010629 "negative regulation of gene
expression" evidence=IDA] [GO:0031080 "nuclear pore outer ring"
evidence=ISS] [GO:0007184 "SMAD protein import into nucleus"
evidence=IMP] [GO:0006607 "NLS-bearing substrate import into
nucleus" evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978 eggNOG:COG2319
GO:GO:0010629 GO:GO:0007184 GO:GO:0035293 EMBL:AF160909
ProteinModelPortal:Q7KLW8 STRING:Q7KLW8 PaxDb:Q7KLW8 PRIDE:Q7KLW8
FlyBase:FBgn0024509 InParanoid:Q7KLW8 OrthoDB:EOG46T1H2
ArrayExpress:Q7KLW8 Bgee:Q7KLW8 Uniprot:Q7KLW8
Length = 386
Score = 135 (52.6 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 62/229 (27%), Positives = 94/229 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
++ G LAT S+DG++ I + K H G + +V W P+FG+ +A
Sbjct: 52 DFYGLLLATCSSDGSVRIFHSRKNNKALA----ELKGHQGPVWQVAWAHPKFGNILASCS 107
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+ P W + + + V V F S L L A SDG V V
Sbjct: 108 YDRKVIVWKSTT----PRDWTKLYEYSNHDSSVNSVDFAPSEYGLVLACASSDGSVSVLT 163
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQG-SSFVLGFNSDTP 196
+ W + + NA ++A ISW P + + V ++
Sbjct: 164 CNTEYGV--WDAK-KIPNA--------HTIGVNA-ISWCPAQAPDPAFDQRVTSRSAAVK 211
Query: 197 QL------NSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
+L N K+W D ++RW V E L E SD V VAWA +IG
Sbjct: 212 RLVSGGCDNLVKIWRED--NDRW--VEEHRL-EAHSDWVRDVAWAPSIG 255
>DICTYBASE|DDB_G0292052 [details] [associations]
symbol:sec13 "putative transport protein"
species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0030127 "COPII vesicle coat"
evidence=ISS] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=ISS] [GO:0005643 "nuclear pore" evidence=IEA;ISS]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0031410 "cytoplasmic
vesicle" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0012507 "ER to Golgi
transport vesicle membrane" evidence=IEA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 dictyBase:DDB_G0292052 GenomeReviews:CM000155_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005789
EMBL:AAFI02000187 GO:GO:0015031 eggNOG:COG2319 GO:GO:0005643
GO:GO:0006888 GO:GO:0051028 GO:GO:0030127 KO:K14004 OMA:IKLWKEE
RefSeq:XP_629794.1 ProteinModelPortal:Q54DS8 SMR:Q54DS8
STRING:Q54DS8 PRIDE:Q54DS8 EnsemblProtists:DDB0235182
GeneID:8628472 KEGG:ddi:DDB_G0292052 ProtClustDB:CLSZ2429468
Uniprot:Q54DS8
Length = 301
Score = 128 (50.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 55/228 (24%), Positives = 99/228 (43%)
Query: 15 SSWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVA 74
+ ++Y G+ LAT S+D + I +L+ H G + +V W P+FG +A
Sbjct: 17 AQFDYYGKFLATCSSDKMIKIFDVGGENPQHLV-DLRG--HEGPVWQVAWAHPKFGKILA 73
Query: 75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134
D +++W+E+ ++ W + + V + + L L A SDG V
Sbjct: 74 SASYDRKVIVWKEVGNNS----WSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVT 129
Query: 135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKA---SCISASISWNPQKGENQGSSFVLGF 191
++ + + ++Q Q ++SV+ A S ++++ + P + V G
Sbjct: 130 IHNYNNNVWEAPQKIQVS-QIGVNSVSWSPAAIPTSLVNSANTIIPAPIKR----IVTG- 183
Query: 192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
+ D N K+ F ++W+ +L ED D V VAWA NIG
Sbjct: 184 SCD----NLIKI--FKNVEDKWILDKQL---EDHKDWVRDVAWAPNIG 222
>WB|WBGene00003806 [details] [associations]
symbol:npp-20 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0012507 GO:GO:0002119
GO:GO:0032940 Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0005789
GO:GO:0015031 eggNOG:COG2319 GO:GO:0010171 GO:GO:0040011
GO:GO:0000003 GO:GO:0005643 GO:GO:0000910 GO:GO:0051028
GO:GO:0006997 GO:GO:0051169 GeneTree:ENSGT00550000075049
HOGENOM:HOG000216895 KO:K14004 OMA:IKLWKEE EMBL:FO081581
RefSeq:NP_500086.1 RefSeq:NP_500087.1 ProteinModelPortal:Q9N4A7
SMR:Q9N4A7 DIP:DIP-25859N IntAct:Q9N4A7 MINT:MINT-1089120
STRING:Q9N4A7 PaxDb:Q9N4A7 PRIDE:Q9N4A7 EnsemblMetazoa:Y77E11A.13a
GeneID:176957 KEGG:cel:CELE_Y77E11A.13 UCSC:Y77E11A.13b CTD:176957
WormBase:Y77E11A.13a WormBase:Y77E11A.13b InParanoid:Q9N4A7
NextBio:894734 ArrayExpress:Q9N4A7 Uniprot:Q9N4A7
Length = 313
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/118 (24%), Positives = 47/118 (39%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
N G RLAT +D + I L H+G + KV W P++G +A
Sbjct: 22 NIYGSRLATCGSDRLVKIFEVRPNGQSYPMAELVG--HSGPVWKVSWAHPKYGGLLASAS 79
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135
D +++W E Q +W+ + + V F L L +A +DG + +
Sbjct: 80 YDKKVIIWNE-----QQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASADGDIGI 132
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA 231
S+ W P + ++ +D + K+W FD+A N W+ LA +D V
Sbjct: 157 SVCWAPGSADPAAKKRLVSAGND----KNVKIWAFDDATNEWILEKTLA---GHTDFVRE 209
Query: 232 VAW 234
AW
Sbjct: 210 AAW 212
>UNIPROTKB|Q9N4A7 [details] [associations]
symbol:npp-20 "Protein SEC13 homolog" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0051169 "nuclear transport" evidence=IC]
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0005643 "nuclear pore"
evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0012507 GO:GO:0002119
GO:GO:0032940 Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0005789
GO:GO:0015031 eggNOG:COG2319 GO:GO:0010171 GO:GO:0040011
GO:GO:0000003 GO:GO:0005643 GO:GO:0000910 GO:GO:0051028
GO:GO:0006997 GO:GO:0051169 GeneTree:ENSGT00550000075049
HOGENOM:HOG000216895 KO:K14004 OMA:IKLWKEE EMBL:FO081581
RefSeq:NP_500086.1 RefSeq:NP_500087.1 ProteinModelPortal:Q9N4A7
SMR:Q9N4A7 DIP:DIP-25859N IntAct:Q9N4A7 MINT:MINT-1089120
STRING:Q9N4A7 PaxDb:Q9N4A7 PRIDE:Q9N4A7 EnsemblMetazoa:Y77E11A.13a
GeneID:176957 KEGG:cel:CELE_Y77E11A.13 UCSC:Y77E11A.13b CTD:176957
WormBase:Y77E11A.13a WormBase:Y77E11A.13b InParanoid:Q9N4A7
NextBio:894734 ArrayExpress:Q9N4A7 Uniprot:Q9N4A7
Length = 313
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/118 (24%), Positives = 47/118 (39%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
N G RLAT +D + I L H+G + KV W P++G +A
Sbjct: 22 NIYGSRLATCGSDRLVKIFEVRPNGQSYPMAELVG--HSGPVWKVSWAHPKYGGLLASAS 79
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135
D +++W E Q +W+ + + V F L L +A +DG + +
Sbjct: 80 YDKKVIIWNE-----QQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASADGDIGI 132
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA 231
S+ W P + ++ +D + K+W FD+A N W+ LA +D V
Sbjct: 157 SVCWAPGSADPAAKKRLVSAGND----KNVKIWAFDDATNEWILEKTLA---GHTDFVRE 209
Query: 232 VAW 234
AW
Sbjct: 210 AAW 212
>UNIPROTKB|Q3ZCC9 [details] [associations]
symbol:SEC13 "Protein SEC13 homolog" species:9913 "Bos
taurus" [GO:0031080 "nuclear pore outer ring" evidence=ISS]
[GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0012507 GO:GO:0000776 GO:GO:0016192 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031
eggNOG:COG2319 GO:GO:0051028 GO:GO:0031080 EMBL:BC102514
IPI:IPI00691005 RefSeq:NP_001069033.1 UniGene:Bt.62595
ProteinModelPortal:Q3ZCC9 SMR:Q3ZCC9 STRING:Q3ZCC9 PRIDE:Q3ZCC9
Ensembl:ENSBTAT00000023702 GeneID:512530 KEGG:bta:512530 CTD:6396
GeneTree:ENSGT00550000075049 HOGENOM:HOG000216895
HOVERGEN:HBG057343 InParanoid:Q3ZCC9 KO:K14004 OMA:IKLWKEE
OrthoDB:EOG40P471 NextBio:20870435 Uniprot:Q3ZCC9
Length = 322
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 57/224 (25%), Positives = 94/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQIL-VADLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E+ W+ + V V + L L SDG +
Sbjct: 79 YDRKVIIWKE--ENGT---WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAIS--- 130
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
LL L W+++ + NA I + + + S+ P Q +++ F S
Sbjct: 131 LLTYTGLGQWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDQPS---GQKPNYIKKFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W+ +E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLIKLWK-EEEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 225
>SGD|S000004198 [details] [associations]
symbol:SEC13 "Structural component of 3 distinct complexes"
species:4932 "Saccharomyces cerevisiae" [GO:0030433 "ER-associated
protein catabolic process" evidence=IMP] [GO:0031080 "nuclear pore
outer ring" evidence=IDA] [GO:0090114 "COPII-coated vesicle
budding" evidence=IMP] [GO:0030127 "COPII vesicle coat"
evidence=IDA] [GO:0005198 "structural molecule activity"
evidence=IDA;IMP] [GO:0005773 "vacuole" evidence=IEA] [GO:0005774
"vacuolar membrane" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0031410 "cytoplasmic
vesicle" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0012507 "ER to Golgi transport vesicle membrane"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0043547 "positive regulation of GTPase activity" evidence=IDA]
[GO:0035859 "Seh1-associated complex" evidence=IDA] [GO:0031081
"nuclear pore distribution" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SGD:S000004198 GO:GO:0005774
GO:GO:0045893 Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0005789
GO:GO:0043547 GO:GO:0005198 GO:GO:0015031 eggNOG:COG2319
EMBL:BK006945 GO:GO:0030433 GO:GO:0051028 EMBL:U14913 GO:GO:0030127
GO:GO:0031080 GO:GO:0031081 GO:GO:0035859 PDB:3IKO PDBsum:3IKO
PDB:3JRO PDBsum:3JRO GeneTree:ENSGT00550000075049
HOGENOM:HOG000216895 KO:K14004 OMA:IKLWKEE OrthoDB:EOG4QNR53
EMBL:L05929 PIR:A45442 RefSeq:NP_013309.1 PDB:2PM6 PDB:2PM7
PDB:2PM9 PDB:3JRP PDB:3MZK PDB:3MZL PDBsum:2PM6 PDBsum:2PM7
PDBsum:2PM9 PDBsum:3JRP PDBsum:3MZK PDBsum:3MZL
ProteinModelPortal:Q04491 SMR:Q04491 DIP:DIP-1826N IntAct:Q04491
MINT:MINT-402427 STRING:Q04491 PaxDb:Q04491 PeptideAtlas:Q04491
EnsemblFungi:YLR208W GeneID:850905 KEGG:sce:YLR208W CYGD:YLR208w
EvolutionaryTrace:Q04491 NextBio:967299 Genevestigator:Q04491
GermOnline:YLR208W GO:GO:0090114 Uniprot:Q04491
Length = 297
Score = 120 (47.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 53/191 (27%), Positives = 81/191 (42%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G+RLAT S+D T+ I + T H G + +V W P+FG +A
Sbjct: 18 DYYGKRLATCSSDKTIKIFEVEGETHKLI--DTLTG-HEGPVWRVDWAHPKFGTILASCS 74
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
DG +L+W+E E+ + W S V VQ+ L+ A SDG V V E
Sbjct: 75 YDGKVLIWKE--ENGR---WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQ-KGENQGSSFVLGFNSDTP 196
+ + A +AI AS A+I + + G + FV G +D
Sbjct: 130 FKENGTTSPIIIDA---HAIG----VNSASWAPATIEEDGEHNGTKESRKFVTG-GAD-- 179
Query: 197 QLNSSKVWEFD 207
N K+W+++
Sbjct: 180 --NLVKIWKYN 188
>UNIPROTKB|E1BVC4 [details] [associations]
symbol:SEC13 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000776 "kinetochore" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005635 GO:GO:0000776
Gene3D:2.130.10.10 SUPFAM:SSF50978 CTD:6396
GeneTree:ENSGT00550000075049 KO:K14004 OMA:IKLWKEE
EMBL:AADN02014522 EMBL:AADN02014521 IPI:IPI00586706
RefSeq:XP_414450.3 UniGene:Gga.12581 ProteinModelPortal:E1BVC4
Ensembl:ENSGALT00000013715 GeneID:416119 KEGG:gga:416119
Uniprot:E1BVC4
Length = 320
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 54/224 (24%), Positives = 92/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E+ W+ + + V V + L L SDG + +
Sbjct: 79 YDRKVIIWKE--ENGT---WEKTYEYTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLS 133
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
W+++ + NA I + + + S+ P Q +++ F S
Sbjct: 134 YTGD---GQWEVK-KISNAHTIGCNAVSWAPAVVPGSLIEQPS---GQKPNYIKRFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W+ E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLVKIWK--EEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 224
>ZFIN|ZDB-GENE-040426-2649 [details] [associations]
symbol:sec13 "SEC13 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0055123 "digestive system development"
evidence=IMP] [GO:0001889 "liver development" evidence=IMP]
[GO:0070971 "endoplasmic reticulum exit site" evidence=IDA]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
[GO:0051216 "cartilage development" evidence=IMP] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=ISS] [GO:0070278
"extracellular matrix constituent secretion" evidence=IMP]
[GO:0005622 "intracellular" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 ZFIN:ZDB-GENE-040426-2649
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0001889 GO:GO:0051216
GO:GO:0006888 GO:GO:0007029 GO:GO:0055123 GO:GO:0070278
GO:GO:0070971 CTD:6396 GeneTree:ENSGT00550000075049
HOGENOM:HOG000216895 HOVERGEN:HBG057343 KO:K14004 EMBL:BX537350
EMBL:BC054585 EMBL:BC153483 EMBL:CT027575 IPI:IPI00513236
RefSeq:NP_998500.1 UniGene:Dr.5496 STRING:Q7T2E1
Ensembl:ENSDART00000077063 GeneID:798071 KEGG:dre:798071
InParanoid:Q7T2E1 OMA:ISWAPAT NextBio:20933269 Uniprot:Q7T2E1
Length = 320
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 59/226 (26%), Positives = 93/226 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVKNGGQIL-VADLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E++ W + + V V +G L L SDG + V
Sbjct: 79 YDRKVIIWKE--ENST---WDKMYEYTGHDSSVNSVCWGPYDFGLILACGSSDGAISVLT 133
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNP--QKGENQGSSFVLGFNS 193
+W ++ + NA I + + + S+ P QK N FV G
Sbjct: 134 CSGD---GHWDIK-KINNAHTIGCNAVSWAPAVVPGSLIEQPTGQK-PNYIKRFVSG-GC 187
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
D N K+W+ E +W +L E SD V V WA +IG
Sbjct: 188 D----NLVKLWK--EEDGQWKEDQKL---EAHSDWVRDVGWAPSIG 224
>UNIPROTKB|F1PDM3 [details] [associations]
symbol:SEC13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005635 GO:GO:0000776
Gene3D:2.130.10.10 SUPFAM:SSF50978 CTD:6396
GeneTree:ENSGT00550000075049 KO:K14004 OMA:IKLWKEE
EMBL:AAEX03012077 RefSeq:XP_850437.1 ProteinModelPortal:F1PDM3
Ensembl:ENSCAFT00000008242 GeneID:607653 KEGG:cfa:607653
NextBio:20893365 Uniprot:F1PDM3
Length = 322
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 56/224 (25%), Positives = 93/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E+ W+ + V V + L L SDG +
Sbjct: 79 YDRKVIIWKE--ENGT---WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAIS--- 130
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
LL W+++ + NA I + + + S+ P Q +++ F S
Sbjct: 131 LLTYTGEGQWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDQPS---GQKPNYIKKFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W+ +E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLIKLWK-EEEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 225
>UNIPROTKB|P55735 [details] [associations]
symbol:SEC13 "Protein SEC13 homolog" species:9606 "Homo
sapiens" [GO:0051028 "mRNA transport" evidence=IEA] [GO:0031080
"nuclear pore outer ring" evidence=NAS;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0006886 "intracellular protein transport" evidence=NAS]
[GO:0000776 "kinetochore" evidence=IDA] [GO:0000087 "M phase of
mitotic cell cycle" evidence=TAS] [GO:0000236 "mitotic
prometaphase" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0002474 "antigen processing and presentation of
peptide antigen via MHC class I" evidence=TAS] [GO:0005789
"endoplasmic reticulum membrane" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=TAS] [GO:0012507 "ER to Golgi transport vesicle
membrane" evidence=TAS] [GO:0016044 "cellular membrane
organization" evidence=TAS] [GO:0018279 "protein N-linked
glycosylation via asparagine" evidence=TAS] [GO:0019886 "antigen
processing and presentation of exogenous peptide antigen via MHC
class II" evidence=TAS] [GO:0043687 "post-translational protein
modification" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0048208 "COPII vesicle coating"
evidence=TAS] Reactome:REACT_11123 Reactome:REACT_17015
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005829 Reactome:REACT_6900 Reactome:REACT_115566
GO:GO:0006886 GO:GO:0012507 GO:GO:0002474 Reactome:REACT_21300
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0019886
GO:GO:0005789 eggNOG:COG2319 GO:GO:0043687 GO:GO:0018279
GO:GO:0051028 GO:GO:0000236 GO:GO:0048208 GO:GO:0031080 PDB:3BG0
PDB:3BG1 PDBsum:3BG0 PDBsum:3BG1 CTD:6396 HOGENOM:HOG000216895
HOVERGEN:HBG057343 KO:K14004 OrthoDB:EOG40P471 EMBL:L09260
EMBL:BC002634 EMBL:BC006167 EMBL:BC091506 IPI:IPI00479141
RefSeq:NP_001129704.1 RefSeq:NP_899195.1 UniGene:Hs.166924
ProteinModelPortal:P55735 SMR:P55735 DIP:DIP-39091N IntAct:P55735
MINT:MINT-1154053 STRING:P55735 PhosphoSite:P55735 DMDM:50403748
PaxDb:P55735 PRIDE:P55735 DNASU:6396 Ensembl:ENST00000337354
Ensembl:ENST00000350697 GeneID:6396 KEGG:hsa:6396 UCSC:uc003bvl.3
GeneCards:GC03M010335 HGNC:HGNC:10697 HPA:HPA035292 MIM:600152
neXtProt:NX_P55735 PharmGKB:PA35620 InParanoid:P55735
EvolutionaryTrace:P55735 GenomeRNAi:6396 NextBio:24846
ArrayExpress:P55735 Bgee:P55735 CleanEx:HS_SEC13
Genevestigator:P55735 GermOnline:ENSG00000157020 Uniprot:P55735
Length = 322
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 56/224 (25%), Positives = 93/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W E E+ W+ + V V + L L SDG +
Sbjct: 79 YDRKVIIWRE--ENGT---WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS--- 130
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
LL W+++ + NA I + + + S+ +P Q +++ F S
Sbjct: 131 LLTYTGEGQWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDHPS---GQKPNYIKRFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W+ +E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLIKLWK-EEEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 225
>MGI|MGI:99832 [details] [associations]
symbol:Sec13 "SEC13 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=ISO] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0031080
"nuclear pore outer ring" evidence=ISO] [GO:0031410 "cytoplasmic
vesicle" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
MGI:MGI:99832 GO:GO:0012507 GO:GO:0000776 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031
eggNOG:COG2319 GO:GO:0006888 GO:GO:0051028 GO:GO:0031080 CTD:6396
GeneTree:ENSGT00550000075049 HOGENOM:HOG000216895
HOVERGEN:HBG057343 KO:K14004 OMA:IKLWKEE OrthoDB:EOG40P471
EMBL:AK003354 EMBL:AK009755 EMBL:BC002128 IPI:IPI00133920
RefSeq:NP_077168.2 UniGene:Mm.29296 ProteinModelPortal:Q9D1M0
SMR:Q9D1M0 IntAct:Q9D1M0 STRING:Q9D1M0 PhosphoSite:Q9D1M0
REPRODUCTION-2DPAGE:Q9D1M0 PaxDb:Q9D1M0 PRIDE:Q9D1M0 DNASU:110379
Ensembl:ENSMUST00000032440 GeneID:110379 KEGG:mmu:110379
UCSC:uc009dhm.1 InParanoid:Q9D1M0 NextBio:363887 Bgee:Q9D1M0
CleanEx:MM_SEC13 Genevestigator:Q9D1M0
GermOnline:ENSMUSG00000030298 Uniprot:Q9D1M0
Length = 322
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 56/224 (25%), Positives = 92/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E+ W+ + V V + L L SDG +
Sbjct: 79 YDRKVIIWKE--ENGT---WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAIS--- 130
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
LL W+++ + NA I + + + S+ P Q +++ F S
Sbjct: 131 LLTYTGEGQWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDQPS---GQKPNYIKKFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W +E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLIKLWR-EEEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 225
>RGD|1359555 [details] [associations]
symbol:Sec13 "SEC13 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA]
[GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0031080 "nuclear
pore outer ring" evidence=ISO;ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0000776 "kinetochore" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
RGD:1359555 GO:GO:0012507 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0005789 GO:GO:0015031 eggNOG:COG2319
GO:GO:0006888 GO:GO:0051028 GO:GO:0031080 CTD:6396
GeneTree:ENSGT00550000075049 HOGENOM:HOG000216895
HOVERGEN:HBG057343 KO:K14004 OrthoDB:EOG40P471 EMBL:BC084705
IPI:IPI00364566 RefSeq:NP_001006979.1 UniGene:Rn.1553
ProteinModelPortal:Q5XFW8 SMR:Q5XFW8 STRING:Q5XFW8 PRIDE:Q5XFW8
Ensembl:ENSRNOT00000014377 GeneID:297522 KEGG:rno:297522
UCSC:RGD:1359555 InParanoid:Q5XFW8 NextBio:642376
Genevestigator:Q5XFW8 Uniprot:Q5XFW8
Length = 322
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 56/224 (25%), Positives = 92/224 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
+Y G RLAT S+D ++ I +L+ H G + +V W P +G+ +A
Sbjct: 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRG--HEGPVWQVAWAHPMYGNILASCS 78
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E E+ W+ + V V + L L SDG +
Sbjct: 79 YDRKVIIWKE--ENGT---WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAIS--- 130
Query: 138 LLDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT 195
LL W+++ + NA I + + + S+ P Q +++ F S
Sbjct: 131 LLTYTGEGQWEVK-KINNAHTIGCNAVSWAPAVVPGSLIDQPS---GQKPNYIKKFASGG 186
Query: 196 PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
N K+W +E +W +L E SD V VAWA +IG
Sbjct: 187 CD-NLIKLWR-EEEDGQWKEEQKL---EAHSDWVRDVAWAPSIG 225
>UNIPROTKB|E3NCB9 [details] [associations]
symbol:Cre-npp-20 "CRE-NPP-20 protein" species:31234
"Caenorhabditis remanei" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0005643 "nuclear pore" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005643 GO:GO:0000910 OMA:IKLWKEE EMBL:DS268594
RefSeq:XP_003093969.1 ProteinModelPortal:E3NCB9
EnsemblMetazoa:CRE15709 GeneID:9811680 CTD:9811680 Uniprot:E3NCB9
Length = 311
Score = 103 (41.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 38/148 (25%), Positives = 62/148 (41%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
N G RLAT +D + I L H G + KV W P++G +A
Sbjct: 22 NIYGNRLATCGSDRLVKIFEVRPNGQSYPLIELSG--HNGPVWKVSWAHPKYGGLLASAA 79
Query: 78 SDGSLLLWEEIVEDAQP-LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136
D +++W+EI Q +W C +TS Q+G L L ++ +DG + +
Sbjct: 80 YDKKVIIWQEINGRWQKSYEWA-CHEASTTSVAFAPHQYG-----LWLASSSADGDIGIL 133
Query: 137 ELLDPLILKNWQ---LQAEFQNAIDSVT 161
D + WQ +Q + ++SV+
Sbjct: 134 RY-DS-VTGQWQSSKIQKCHEQGVNSVS 159
Score = 47 (21.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW 213
S+SW P + ++ +D +K+W F + + W
Sbjct: 157 SVSWAPGSADPTAKKRLVSAGND----KCAKIWVFQQTNGFW 194
>POMBASE|SPBC215.15 [details] [associations]
symbol:sec13 "COPII-coated vesicle component Sec13"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005643 "nuclear pore" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006886
"intracellular protein transport" evidence=IC] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=ISO] [GO:0006999
"nuclear pore organization" evidence=ISO] [GO:0030127 "COPII
vesicle coat" evidence=ISO] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0071937 "barrier septum assembly involved in cell
cycle cytokinesis" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 PomBase:SPBC215.15 GO:GO:0005829
GO:GO:0005886 GO:GO:0006886 Gene3D:2.130.10.10 PROSITE:PS00678
GO:GO:0005789 EMBL:CU329671 eggNOG:COG2319 GO:GO:0005643
GenomeReviews:CU329671_GR GO:GO:0006888 GO:GO:0051028 GO:GO:0071937
GO:GO:0030127 GO:GO:0006999 HOGENOM:HOG000216895 KO:K14004
OMA:IKLWKEE OrthoDB:EOG4QNR53 PIR:T39905 RefSeq:NP_596692.1
ProteinModelPortal:O94319 STRING:O94319 PRIDE:O94319
EnsemblFungi:SPBC215.15.1 GeneID:2540716 KEGG:spo:SPBC215.15
NextBio:20801838 Uniprot:O94319
Length = 297
Score = 112 (44.5 bits), Expect = 0.00033, P = 0.00033
Identities = 46/198 (23%), Positives = 79/198 (39%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKT-KVHAGAILKVVWVPPEFGDAVACI 76
+Y G+RLAT S+D T+ + L+T + H+G + ++ W P+FG +A
Sbjct: 18 DYYGKRLATCSSDQTIKVFSIENNQQTL----LETLRGHSGPVWQLGWAHPKFGTILASA 73
Query: 77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136
DG +++W E W + V V + L A SDG V V
Sbjct: 74 SYDGHVIVWRETGG-----VWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVL 128
Query: 137 ELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP 196
E D ++ + ++V + S + + +P G + ++ G +
Sbjct: 129 EFKDDGSCDT-RIFTAHEPGCNAVC-WSPPSLSGSVVGQSPAAGPKKLAT--AGCD---- 180
Query: 197 QLNSSKVWEFDEAHNRWL 214
N K+W FD N W+
Sbjct: 181 --NLVKIWAFDAGVNNWI 196
>UNIPROTKB|A8XJ40 [details] [associations]
symbol:npp-20 "Protein SEC13 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000910 "cytokinesis" evidence=ISS]
[GO:0005643 "nuclear pore" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0012507 GO:GO:0016192
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005789
GO:GO:0015031 eggNOG:COG2319 GO:GO:0005643 GO:GO:0000910
GO:GO:0051028 HOGENOM:HOG000216895 EMBL:HE601467
ProteinModelPortal:A8XJ40 STRING:A8XJ40 EnsemblMetazoa:CBG13889
WormBase:CBG13889 Uniprot:A8XJ40
Length = 306
Score = 109 (43.4 bits), Expect = 0.00080, P = 0.00080
Identities = 35/141 (24%), Positives = 57/141 (40%)
Query: 18 NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
N G RLAT +D + I L H G + KV W P++G +A
Sbjct: 22 NIYGNRLATCGSDRLVKIFEVRPNGQSYPLIELSG--HNGPVWKVSWAHPKYGGLLASAS 79
Query: 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
D +++W+E+ +W+ +E+ V V F L L ++ +DG + +
Sbjct: 80 YDKKVIIWQEVNG-----RWQKTYEWETHEASVTSVAFAPHQFGLMLASSSADGTIGILR 134
Query: 138 LLDPLILKNWQLQAEFQNAID 158
D + WQ + QN D
Sbjct: 135 F-DAQT-QQWQ-SSRIQNCHD 152
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 229 0.00082 113 3 11 22 0.43 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 620 (66 KB)
Total size of DFA: 217 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.56u 0.13s 18.69t Elapsed: 00:00:01
Total cpu time: 18.57u 0.13s 18.70t Elapsed: 00:00:01
Start: Fri May 10 06:18:41 2013 End: Fri May 10 06:18:42 2013