Query 026295
Match_columns 240
No_of_seqs 271 out of 1222
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2445 Nuclear pore complex c 100.0 6.1E-35 1.3E-39 211.9 22.5 225 7-240 11-237 (361)
2 KOG0271 Notchless-like WD40 re 100.0 3.3E-35 7.2E-40 218.9 15.4 187 4-237 110-299 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-35 2.8E-40 223.2 12.3 188 4-239 256-443 (459)
4 KOG0645 WD40 repeat protein [G 100.0 3.4E-33 7.3E-38 199.6 24.0 200 3-240 8-209 (312)
5 KOG0263 Transcription initiati 100.0 6.5E-35 1.4E-39 234.2 16.3 188 3-239 445-632 (707)
6 KOG0279 G protein beta subunit 100.0 1.1E-33 2.3E-38 202.8 18.7 187 2-237 56-244 (315)
7 KOG1332 Vesicle coat complex C 100.0 3.4E-34 7.4E-39 202.0 11.4 209 2-240 4-221 (299)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-34 4.6E-39 216.7 10.7 188 3-239 211-400 (459)
9 KOG0271 Notchless-like WD40 re 100.0 4.5E-33 9.8E-38 207.6 17.5 195 3-240 194-465 (480)
10 KOG0279 G protein beta subunit 100.0 7.8E-31 1.7E-35 188.2 20.3 193 4-239 10-205 (315)
11 KOG0645 WD40 repeat protein [G 100.0 4.7E-30 1E-34 183.6 22.7 184 7-235 59-242 (312)
12 KOG0273 Beta-transducin family 100.0 1.5E-30 3.2E-35 198.6 17.3 192 10-239 236-465 (524)
13 KOG0285 Pleiotropic regulator 100.0 1.4E-30 3.1E-35 192.9 16.7 185 4-237 146-330 (460)
14 KOG0286 G-protein beta subunit 100.0 1.9E-29 4.1E-34 182.3 20.6 191 2-239 138-328 (343)
15 KOG0284 Polyadenylation factor 100.0 2.4E-31 5.2E-36 199.7 8.2 184 4-237 133-317 (464)
16 KOG0291 WD40-repeat-containing 100.0 6.7E-29 1.5E-33 199.2 21.6 187 4-239 345-533 (893)
17 KOG0284 Polyadenylation factor 100.0 9.6E-31 2.1E-35 196.4 9.5 190 2-238 172-362 (464)
18 KOG0286 G-protein beta subunit 100.0 1.6E-28 3.4E-33 177.6 20.1 193 3-239 49-242 (343)
19 KOG0266 WD40 repeat-containing 100.0 1E-28 2.3E-33 200.4 21.4 189 9-239 159-347 (456)
20 KOG0315 G-protein beta subunit 100.0 2.7E-28 6E-33 172.8 19.3 193 4-239 78-271 (311)
21 KOG0277 Peroxisomal targeting 100.0 8.6E-29 1.9E-33 175.8 15.9 185 9-237 60-245 (311)
22 KOG0295 WD40 repeat-containing 100.0 1.4E-29 3.1E-34 187.7 12.0 194 2-238 143-346 (406)
23 KOG0276 Vesicle coat complex C 100.0 4.6E-29 1E-33 196.5 15.4 192 3-239 91-282 (794)
24 KOG0263 Transcription initiati 100.0 2.4E-29 5.3E-34 202.3 13.6 163 5-209 489-651 (707)
25 KOG0316 Conserved WD40 repeat- 100.0 3.1E-28 6.7E-33 171.3 16.9 184 5-239 13-196 (307)
26 KOG0266 WD40 repeat-containing 100.0 9.7E-28 2.1E-32 194.7 21.3 168 4-212 198-369 (456)
27 PTZ00421 coronin; Provisional 100.0 3.8E-27 8.2E-32 191.2 24.3 195 5-239 71-272 (493)
28 KOG0283 WD40 repeat-containing 100.0 3E-28 6.6E-33 197.4 16.5 194 2-237 259-512 (712)
29 KOG1332 Vesicle coat complex C 100.0 2.1E-28 4.5E-33 172.9 13.5 206 3-239 50-269 (299)
30 KOG0273 Beta-transducin family 100.0 1.3E-27 2.9E-32 182.6 18.1 192 4-238 271-505 (524)
31 KOG0265 U5 snRNP-specific prot 100.0 2E-27 4.2E-32 172.4 17.9 186 5-239 43-229 (338)
32 KOG0276 Vesicle coat complex C 100.0 5.6E-28 1.2E-32 190.5 16.3 193 1-238 47-239 (794)
33 KOG0973 Histone transcription 100.0 1.9E-27 4.2E-32 197.3 18.9 207 4-238 64-337 (942)
34 KOG0295 WD40 repeat-containing 100.0 3.7E-27 8E-32 174.9 18.4 189 3-238 187-388 (406)
35 KOG0277 Peroxisomal targeting 100.0 4.1E-28 8.8E-33 172.4 12.6 190 4-237 99-289 (311)
36 KOG0264 Nucleosome remodeling 100.0 1.7E-27 3.6E-32 181.1 14.5 204 4-238 172-385 (422)
37 KOG0293 WD40 repeat-containing 100.0 1E-26 2.2E-31 175.3 17.5 210 3-238 218-494 (519)
38 KOG0319 WD40-repeat-containing 100.0 8.3E-27 1.8E-31 186.7 17.6 192 3-238 405-601 (775)
39 KOG1407 WD40 repeat protein [F 100.0 2.6E-27 5.7E-32 168.8 12.7 196 3-238 14-284 (313)
40 cd00200 WD40 WD40 domain, foun 99.9 6.2E-25 1.3E-29 167.7 22.7 188 2-238 2-189 (289)
41 KOG0318 WD40 repeat stress pro 99.9 6.1E-25 1.3E-29 170.2 22.2 212 4-239 185-500 (603)
42 KOG0319 WD40-repeat-containing 99.9 5.6E-26 1.2E-30 182.0 16.4 162 5-208 459-620 (775)
43 KOG0282 mRNA splicing factor [ 99.9 5.9E-27 1.3E-31 179.5 9.7 122 4-141 209-332 (503)
44 KOG0973 Histone transcription 99.9 9.6E-26 2.1E-30 187.3 17.5 200 6-239 9-232 (942)
45 KOG0292 Vesicle coat complex C 99.9 2.5E-25 5.4E-30 181.8 18.6 204 3-237 45-261 (1202)
46 KOG0310 Conserved WD40 repeat- 99.9 1.1E-25 2.3E-30 172.7 15.4 191 3-240 62-252 (487)
47 PTZ00420 coronin; Provisional 99.9 2.4E-24 5.1E-29 176.1 24.2 178 4-210 69-251 (568)
48 KOG0313 Microtubule binding pr 99.9 7.3E-25 1.6E-29 163.6 19.0 193 5-238 189-401 (423)
49 KOG0265 U5 snRNP-specific prot 99.9 2.8E-25 6E-30 161.3 16.1 201 4-238 85-320 (338)
50 KOG0292 Vesicle coat complex C 99.9 1.3E-25 2.7E-30 183.5 15.2 196 1-238 1-218 (1202)
51 KOG0267 Microtubule severing p 99.9 7.5E-27 1.6E-31 186.7 7.7 185 5-238 66-250 (825)
52 PLN00181 protein SPA1-RELATED; 99.9 6.6E-24 1.4E-28 183.7 24.2 200 4-239 570-776 (793)
53 KOG0643 Translation initiation 99.9 4.1E-24 8.9E-29 153.1 18.5 193 4-239 5-203 (327)
54 KOG0316 Conserved WD40 repeat- 99.9 2.3E-24 5E-29 151.9 16.9 189 3-237 53-281 (307)
55 KOG0291 WD40-repeat-containing 99.9 5.2E-24 1.1E-28 171.4 21.1 183 9-239 307-491 (893)
56 KOG0269 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 181.0 11.5 185 12-238 90-275 (839)
57 KOG0275 Conserved WD40 repeat- 99.9 3.8E-26 8.3E-31 168.0 7.9 169 9-214 213-385 (508)
58 KOG0315 G-protein beta subunit 99.9 3.2E-24 6.9E-29 152.3 17.1 191 5-238 36-227 (311)
59 PTZ00421 coronin; Provisional 99.9 1.2E-23 2.6E-28 170.9 22.9 189 4-238 120-315 (493)
60 KOG0281 Beta-TrCP (transducin 99.9 1.5E-25 3.2E-30 166.1 10.7 187 3-235 231-458 (499)
61 KOG0285 Pleiotropic regulator 99.9 2.8E-24 6.1E-29 159.7 16.9 204 4-240 188-423 (460)
62 KOG1446 Histone H3 (Lys4) meth 99.9 2.7E-23 5.8E-28 152.0 21.8 191 2-238 7-199 (311)
63 KOG0643 Translation initiation 99.9 7.8E-24 1.7E-28 151.7 18.4 170 4-208 47-221 (327)
64 KOG0296 Angio-associated migra 99.9 5.4E-24 1.2E-28 158.3 18.0 122 4-141 101-222 (399)
65 cd00200 WD40 WD40 domain, foun 99.9 2.8E-23 6.1E-28 158.5 22.5 187 4-239 88-274 (289)
66 PLN00181 protein SPA1-RELATED; 99.9 3.7E-23 8.1E-28 179.1 24.6 187 9-239 532-721 (793)
67 KOG0647 mRNA export protein (c 99.9 7.6E-24 1.6E-28 154.1 16.8 202 8-239 26-306 (347)
68 KOG0641 WD40 repeat protein [G 99.9 5E-23 1.1E-27 144.7 20.4 193 5-238 85-331 (350)
69 KOG0269 WD40 repeat-containing 99.9 9.3E-25 2E-29 175.9 13.2 190 4-236 128-319 (839)
70 KOG0640 mRNA cleavage stimulat 99.9 1.7E-24 3.7E-29 158.3 13.2 197 5-238 108-317 (430)
71 KOG0318 WD40 repeat stress pro 99.9 3.6E-23 7.7E-28 160.5 20.3 191 5-240 55-249 (603)
72 KOG0310 Conserved WD40 repeat- 99.9 3.5E-23 7.6E-28 159.1 19.9 187 3-238 104-291 (487)
73 KOG0264 Nucleosome remodeling 99.9 5.1E-24 1.1E-28 162.2 14.7 202 6-238 121-328 (422)
74 KOG0278 Serine/threonine kinas 99.9 2.6E-24 5.6E-29 152.9 11.9 183 7-239 98-280 (334)
75 KOG0296 Angio-associated migra 99.9 4.2E-23 9.1E-28 153.6 18.1 167 4-212 59-225 (399)
76 KOG0289 mRNA splicing factor [ 99.9 5.1E-23 1.1E-27 156.3 18.6 186 5-236 299-486 (506)
77 KOG0289 mRNA splicing factor [ 99.9 4.5E-23 9.9E-28 156.6 17.7 189 3-239 255-445 (506)
78 KOG0294 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 149.7 18.2 120 5-140 39-158 (362)
79 KOG0305 Anaphase promoting com 99.9 3E-23 6.6E-28 164.1 15.4 181 9-238 217-399 (484)
80 KOG0306 WD40-repeat-containing 99.9 7.3E-23 1.6E-27 164.8 17.6 192 3-239 448-647 (888)
81 PTZ00420 coronin; Provisional 99.9 1.3E-21 2.9E-26 160.1 24.7 187 5-239 121-319 (568)
82 KOG0772 Uncharacterized conser 99.9 5.8E-23 1.3E-27 159.1 15.6 209 4-240 162-378 (641)
83 KOG0275 Conserved WD40 repeat- 99.9 8E-24 1.7E-28 155.8 10.2 165 5-208 259-424 (508)
84 KOG0283 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 164.3 18.0 172 4-210 364-535 (712)
85 KOG0305 Anaphase promoting com 99.9 8.9E-23 1.9E-27 161.4 15.9 188 4-239 254-444 (484)
86 KOG0313 Microtubule binding pr 99.9 8.5E-23 1.8E-27 152.7 14.9 165 4-208 255-419 (423)
87 KOG0302 Ribosome Assembly prot 99.9 9.3E-23 2E-27 152.5 15.0 199 4-237 146-358 (440)
88 KOG0268 Sof1-like rRNA process 99.9 1.6E-23 3.4E-28 155.9 10.4 193 4-239 61-285 (433)
89 KOG0288 WD40 repeat protein Ti 99.9 1.5E-22 3.2E-27 152.9 15.6 196 5-238 215-443 (459)
90 KOG0281 Beta-TrCP (transducin 99.9 4.5E-24 9.8E-29 158.3 6.9 170 10-236 198-410 (499)
91 KOG0299 U3 snoRNP-associated p 99.9 9.6E-22 2.1E-26 150.3 19.2 203 7-239 200-438 (479)
92 KOG0274 Cdc4 and related F-box 99.9 4E-22 8.7E-27 162.5 18.2 178 4-235 244-422 (537)
93 KOG4283 Transcription-coupled 99.9 7.1E-22 1.5E-26 143.7 17.2 200 5-238 39-258 (397)
94 KOG2096 WD40 repeat protein [G 99.9 4.5E-22 9.8E-27 146.1 15.5 210 3-238 80-385 (420)
95 KOG0293 WD40 repeat-containing 99.9 8.5E-23 1.8E-27 154.4 11.6 174 2-209 262-515 (519)
96 KOG1063 RNA polymerase II elon 99.9 4.4E-22 9.4E-27 159.0 16.1 206 2-238 518-735 (764)
97 KOG0308 Conserved WD40 repeat- 99.9 1.2E-22 2.5E-27 161.2 12.2 196 3-238 67-267 (735)
98 KOG0306 WD40-repeat-containing 99.9 4.5E-22 9.8E-27 160.3 15.2 161 6-208 505-665 (888)
99 KOG2445 Nuclear pore complex c 99.9 1.2E-20 2.5E-25 138.0 21.2 214 5-238 55-300 (361)
100 KOG0302 Ribosome Assembly prot 99.9 6.2E-22 1.4E-26 148.1 14.1 172 5-209 207-380 (440)
101 KOG0282 mRNA splicing factor [ 99.9 1.6E-22 3.6E-27 155.3 10.8 169 3-205 252-503 (503)
102 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-20 3.2E-25 137.8 19.7 188 5-237 96-286 (311)
103 KOG0300 WD40 repeat-containing 99.9 7.7E-22 1.7E-26 145.0 12.6 196 2-238 141-369 (481)
104 KOG0270 WD40 repeat-containing 99.9 1.2E-21 2.5E-26 149.2 13.7 169 6-212 240-409 (463)
105 KOG1274 WD40 repeat protein [G 99.9 4.2E-21 9.2E-26 157.6 17.6 182 8-240 95-284 (933)
106 KOG0772 Uncharacterized conser 99.9 1.6E-21 3.5E-26 151.2 13.7 190 11-238 216-421 (641)
107 KOG0646 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 144.0 17.7 198 4-236 118-329 (476)
108 KOG0640 mRNA cleavage stimulat 99.9 1.8E-21 4E-26 142.5 10.6 170 3-210 166-338 (430)
109 KOG1036 Mitotic spindle checkp 99.9 1.2E-19 2.6E-24 132.6 18.4 112 9-139 13-124 (323)
110 KOG0641 WD40 repeat protein [G 99.9 5.5E-19 1.2E-23 124.5 21.1 198 9-237 32-284 (350)
111 KOG0278 Serine/threonine kinas 99.9 4.4E-20 9.6E-25 131.6 15.7 163 3-210 137-300 (334)
112 KOG0274 Cdc4 and related F-box 99.9 8.6E-20 1.9E-24 149.0 19.7 174 8-236 207-381 (537)
113 KOG1523 Actin-related protein 99.9 4.1E-20 8.9E-25 135.8 14.7 201 8-240 9-220 (361)
114 KOG0646 WD40 repeat protein [G 99.9 1.5E-19 3.2E-24 138.6 18.3 197 9-239 81-290 (476)
115 KOG1310 WD40 repeat protein [G 99.9 8E-21 1.7E-25 148.6 11.3 183 2-207 43-231 (758)
116 KOG4328 WD40 protein [Function 99.8 2.3E-20 5E-25 142.8 13.6 199 5-240 182-383 (498)
117 KOG1408 WD40 repeat protein [F 99.8 2.8E-20 6E-25 149.7 14.5 183 10-238 460-695 (1080)
118 KOG0642 Cell-cycle nuclear pro 99.8 3E-20 6.5E-25 145.5 14.3 214 5-239 290-544 (577)
119 KOG0267 Microtubule severing p 99.8 9.8E-22 2.1E-26 157.7 6.1 185 4-237 23-207 (825)
120 KOG0301 Phospholipase A2-activ 99.8 7.6E-20 1.6E-24 146.3 16.4 176 4-238 96-271 (745)
121 KOG0300 WD40 repeat-containing 99.8 6.1E-20 1.3E-24 135.1 14.6 189 4-237 267-455 (481)
122 KOG1009 Chromatin assembly com 99.8 2.3E-19 5.1E-24 135.5 17.3 130 7-140 10-154 (434)
123 KOG0301 Phospholipase A2-activ 99.8 9.6E-20 2.1E-24 145.7 16.1 155 3-207 134-288 (745)
124 KOG1274 WD40 repeat protein [G 99.8 2.5E-19 5.4E-24 147.4 18.6 200 6-239 10-245 (933)
125 KOG1007 WD repeat protein TSSC 99.8 2.1E-19 4.6E-24 130.5 15.0 196 8-237 122-341 (370)
126 KOG0639 Transducin-like enhanc 99.8 2.6E-20 5.7E-25 144.4 10.5 181 9-238 465-645 (705)
127 KOG1273 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 130.9 15.5 161 12-207 26-226 (405)
128 KOG0270 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 138.7 13.1 174 20-237 191-384 (463)
129 KOG0639 Transducin-like enhanc 99.8 5.8E-20 1.3E-24 142.5 11.2 187 6-238 416-604 (705)
130 KOG0308 Conserved WD40 repeat- 99.8 3.6E-19 7.8E-24 141.7 15.9 170 3-209 111-287 (735)
131 KOG0303 Actin-binding protein 99.8 5.2E-19 1.1E-23 133.3 15.8 127 4-141 76-205 (472)
132 KOG4283 Transcription-coupled 99.8 8.6E-19 1.9E-23 127.8 14.6 175 7-211 99-280 (397)
133 KOG0290 Conserved WD40 repeat- 99.8 1.4E-18 3.1E-23 126.3 15.0 198 7-238 148-347 (364)
134 KOG1407 WD40 repeat protein [F 99.8 1.8E-18 3.8E-23 124.0 15.2 146 10-193 148-293 (313)
135 KOG0321 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 138.3 15.9 132 4-144 95-253 (720)
136 KOG1034 Transcriptional repres 99.8 1.1E-18 2.4E-23 128.8 13.8 120 7-141 87-213 (385)
137 KOG2048 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 132.4 21.8 190 9-238 25-216 (691)
138 KOG2055 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 132.9 14.5 197 5-239 298-495 (514)
139 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-18 1E-22 131.8 17.1 189 3-238 115-305 (673)
140 KOG1007 WD repeat protein TSSC 99.8 9.5E-19 2.1E-23 127.2 12.5 195 2-237 56-269 (370)
141 KOG2055 WD40 repeat protein [G 99.8 9.7E-18 2.1E-22 128.7 17.5 194 10-239 214-448 (514)
142 KOG0307 Vesicle coat complex C 99.8 2.2E-19 4.9E-24 150.7 9.0 194 10-238 65-265 (1049)
143 KOG0294 WD40 repeat-containing 99.8 9.1E-18 2E-22 123.3 16.1 172 23-239 3-181 (362)
144 KOG0299 U3 snoRNP-associated p 99.8 2.8E-18 6.2E-23 131.5 12.7 187 5-236 138-337 (479)
145 KOG2106 Uncharacterized conser 99.8 4.4E-17 9.5E-22 126.6 19.3 189 3-239 281-504 (626)
146 KOG1188 WD40 repeat protein [G 99.8 5.8E-18 1.2E-22 125.5 13.3 177 22-238 41-223 (376)
147 KOG0307 Vesicle coat complex C 99.8 4.8E-19 1E-23 148.7 8.5 191 4-237 111-307 (1049)
148 KOG0268 Sof1-like rRNA process 99.8 1.1E-18 2.3E-23 130.4 9.0 158 10-208 188-346 (433)
149 KOG1539 WD repeat protein [Gen 99.8 1.1E-17 2.3E-22 136.7 15.4 182 7-239 446-630 (910)
150 KOG0288 WD40 repeat protein Ti 99.8 2.7E-19 5.8E-24 135.4 5.3 184 5-239 171-354 (459)
151 KOG1445 Tumor-specific antigen 99.8 5.2E-18 1.1E-22 135.3 11.6 122 10-141 628-752 (1012)
152 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.2E-22 122.7 13.0 186 11-237 160-351 (406)
153 KOG0647 mRNA export protein (c 99.8 3.2E-17 7E-22 119.8 14.3 160 3-191 66-312 (347)
154 KOG2048 WD40 repeat protein [G 99.8 1.8E-16 3.8E-21 127.0 19.1 190 6-237 107-302 (691)
155 KOG1273 WD40 repeat protein [G 99.8 5.3E-17 1.1E-21 119.5 14.9 195 3-237 59-304 (405)
156 KOG4378 Nuclear protein COP1 [ 99.8 5.7E-18 1.2E-22 131.4 10.3 178 13-239 83-263 (673)
157 KOG0650 WD40 repeat nucleolar 99.8 1.8E-17 3.9E-22 131.1 13.1 198 5-238 396-717 (733)
158 KOG1539 WD repeat protein [Gen 99.8 1.9E-17 4.2E-22 135.2 13.7 158 6-206 490-647 (910)
159 KOG0771 Prolactin regulatory e 99.8 2.1E-17 4.5E-22 125.6 12.8 183 13-239 148-337 (398)
160 KOG0644 Uncharacterized conser 99.7 5.8E-19 1.3E-23 144.2 3.6 118 2-139 183-300 (1113)
161 KOG1524 WD40 repeat-containing 99.7 2E-17 4.3E-22 129.5 11.3 173 2-239 97-269 (737)
162 KOG1523 Actin-related protein 99.7 1.1E-16 2.3E-21 118.0 14.2 179 3-210 49-239 (361)
163 KOG4227 WD40 repeat protein [G 99.7 4.7E-17 1E-21 123.2 12.7 204 3-239 50-257 (609)
164 KOG1538 Uncharacterized conser 99.7 5.4E-17 1.2E-21 130.3 11.7 175 11-239 14-189 (1081)
165 KOG1063 RNA polymerase II elon 99.7 2.3E-16 5.1E-21 126.7 15.2 201 3-236 185-417 (764)
166 KOG4328 WD40 protein [Function 99.7 1.5E-16 3.3E-21 122.1 12.1 169 5-207 230-399 (498)
167 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 9E-15 2E-19 113.1 22.3 184 11-239 74-261 (300)
168 KOG1034 Transcriptional repres 99.7 1.4E-15 3.1E-20 112.5 15.9 176 3-207 129-383 (385)
169 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1E-14 2.2E-19 112.8 21.8 183 10-239 31-219 (300)
170 KOG2106 Uncharacterized conser 99.7 6.4E-15 1.4E-19 114.8 19.7 189 5-237 364-607 (626)
171 KOG1036 Mitotic spindle checkp 99.7 8.9E-16 1.9E-20 112.6 13.6 156 4-192 89-294 (323)
172 KOG0642 Cell-cycle nuclear pro 99.7 5.3E-16 1.1E-20 122.0 12.7 177 4-210 339-564 (577)
173 KOG1538 Uncharacterized conser 99.7 5.8E-16 1.3E-20 124.5 12.8 186 3-239 47-276 (1081)
174 KOG0303 Actin-binding protein 99.7 3.3E-16 7.1E-21 118.4 10.7 132 50-210 75-206 (472)
175 KOG1408 WD40 repeat protein [F 99.7 1.6E-15 3.4E-20 122.8 14.5 170 2-208 540-714 (1080)
176 PF08662 eIF2A: Eukaryotic tra 99.7 9.8E-15 2.1E-19 105.5 17.3 152 13-209 9-181 (194)
177 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-15 3.7E-20 118.7 13.7 168 10-209 220-454 (636)
178 KOG0290 Conserved WD40 repeat- 99.7 3.4E-15 7.4E-20 108.9 14.3 194 6-238 93-299 (364)
179 KOG0322 G-protein beta subunit 99.7 1.3E-15 2.7E-20 109.7 11.6 208 5-239 10-306 (323)
180 KOG2096 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 112.0 12.4 161 49-240 79-292 (420)
181 KOG2110 Uncharacterized conser 99.7 4.7E-14 1E-18 106.0 19.0 157 10-209 88-250 (391)
182 COG2319 FOG: WD40 repeat [Gene 99.6 9.4E-14 2E-18 111.5 21.5 185 4-235 150-337 (466)
183 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-15 2.5E-20 119.7 9.5 119 9-141 290-454 (636)
184 KOG1009 Chromatin assembly com 99.6 8.4E-15 1.8E-19 111.2 13.5 152 56-237 13-176 (434)
185 KOG1445 Tumor-specific antigen 99.6 3.6E-15 7.8E-20 119.4 12.0 166 17-211 587-754 (1012)
186 KOG1587 Cytoplasmic dynein int 99.6 1.6E-14 3.4E-19 117.9 15.9 198 9-238 242-498 (555)
187 KOG0322 G-protein beta subunit 99.6 5.3E-15 1.1E-19 106.6 10.9 164 10-206 151-322 (323)
188 KOG0321 WD40 repeat-containing 99.6 7.5E-15 1.6E-19 117.2 12.6 118 14-141 54-177 (720)
189 KOG1524 WD40 repeat-containing 99.6 4.2E-15 9.1E-20 116.7 10.2 163 22-237 76-238 (737)
190 KOG2919 Guanine nucleotide-bin 99.6 1.2E-14 2.6E-19 107.6 11.7 153 8-193 206-361 (406)
191 KOG2110 Uncharacterized conser 99.6 2.9E-13 6.3E-18 101.8 17.1 117 8-140 128-249 (391)
192 KOG0649 WD40 repeat protein [G 99.6 3.4E-13 7.5E-18 96.4 16.3 190 5-237 58-257 (325)
193 COG2319 FOG: WD40 repeat [Gene 99.6 1.4E-12 3.1E-17 104.6 21.8 180 11-238 111-296 (466)
194 PF08662 eIF2A: Eukaryotic tra 99.6 3.8E-13 8.2E-18 97.2 16.3 111 9-140 59-180 (194)
195 KOG1272 WD40-repeat-containing 99.6 4.5E-15 9.8E-20 114.5 6.5 178 10-236 210-389 (545)
196 KOG0650 WD40 repeat nucleolar 99.6 1.6E-14 3.6E-19 114.6 9.5 168 5-204 562-732 (733)
197 KOG1188 WD40 repeat protein [G 99.6 9.9E-14 2.2E-18 103.3 12.6 175 3-211 64-246 (376)
198 KOG0649 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 100.1 10.9 172 8-212 9-191 (325)
199 PRK11028 6-phosphogluconolacto 99.6 3.7E-12 8E-17 100.2 21.9 204 10-239 80-286 (330)
200 PRK01742 tolB translocation pr 99.6 4.9E-13 1.1E-17 108.6 17.2 181 5-239 199-384 (429)
201 KOG2139 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 97.8 17.3 191 10-240 141-359 (445)
202 PRK11028 6-phosphogluconolacto 99.5 1.6E-11 3.6E-16 96.6 24.0 201 9-239 34-240 (330)
203 KOG1334 WD40 repeat protein [G 99.5 9E-14 1.9E-18 108.0 9.4 206 2-239 135-349 (559)
204 KOG1240 Protein kinase contain 99.5 2.6E-12 5.6E-17 109.9 18.2 203 2-238 1041-1250(1431)
205 PRK01742 tolB translocation pr 99.5 1E-12 2.3E-17 106.7 15.5 178 10-238 248-427 (429)
206 KOG1517 Guanine nucleotide bin 99.5 1.9E-12 4.1E-17 109.3 16.2 187 15-237 1171-1362(1387)
207 PRK02889 tolB translocation pr 99.5 4.9E-12 1.1E-16 102.7 18.2 188 5-239 191-383 (427)
208 KOG4227 WD40 repeat protein [G 99.5 2.6E-12 5.6E-17 97.9 15.1 122 8-141 104-227 (609)
209 KOG1310 WD40 repeat protein [G 99.5 2.8E-13 6.2E-18 106.9 9.7 133 49-209 43-180 (758)
210 KOG1963 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 104.6 16.6 188 14-239 21-305 (792)
211 PRK05137 tolB translocation pr 99.4 2.9E-11 6.2E-16 98.6 20.0 184 5-239 197-389 (435)
212 KOG1963 WD40 repeat protein [G 99.4 6.3E-12 1.4E-16 104.0 16.0 180 7-215 203-383 (792)
213 KOG1272 WD40-repeat-containing 99.4 3.4E-14 7.3E-19 109.8 2.5 156 10-210 171-326 (545)
214 KOG2321 WD40 repeat protein [G 99.4 4.1E-12 8.9E-17 100.9 13.0 179 14-240 138-327 (703)
215 KOG2139 WD40 repeat protein [G 99.4 7.3E-12 1.6E-16 94.4 13.4 185 11-239 100-293 (445)
216 PRK04922 tolB translocation pr 99.4 2.1E-11 4.6E-16 99.3 17.2 184 5-239 199-391 (433)
217 KOG2321 WD40 repeat protein [G 99.4 2.3E-11 5.1E-16 96.7 16.2 198 7-237 49-282 (703)
218 KOG0771 Prolactin regulatory e 99.4 1.3E-11 2.9E-16 94.4 13.1 168 5-208 182-355 (398)
219 KOG1587 Cytoplasmic dynein int 99.4 8.6E-12 1.9E-16 102.1 12.8 164 11-208 349-517 (555)
220 PRK03629 tolB translocation pr 99.4 1.4E-10 2.9E-15 94.3 19.5 186 5-239 194-386 (429)
221 KOG0280 Uncharacterized conser 99.4 2.4E-11 5.2E-16 89.2 13.0 186 12-234 124-309 (339)
222 KOG3881 Uncharacterized conser 99.4 8.1E-11 1.8E-15 89.5 15.6 161 11-210 150-323 (412)
223 KOG1517 Guanine nucleotide bin 99.3 2.5E-11 5.4E-16 102.7 13.5 168 10-209 1209-1383(1387)
224 KOG2111 Uncharacterized conser 99.3 4.1E-10 8.8E-15 83.7 18.2 164 8-209 93-258 (346)
225 KOG4547 WD40 repeat-containing 99.3 2.9E-10 6.2E-15 90.7 18.2 171 18-237 2-195 (541)
226 KOG2111 Uncharacterized conser 99.3 7.5E-10 1.6E-14 82.3 18.8 108 20-141 147-258 (346)
227 PRK03629 tolB translocation pr 99.3 1.7E-10 3.7E-15 93.8 17.0 182 7-237 240-428 (429)
228 TIGR02800 propeller_TolB tol-p 99.3 2.5E-10 5.4E-15 92.8 18.1 184 5-239 185-377 (417)
229 KOG0974 WD-repeat protein WDR6 99.3 2.5E-11 5.4E-16 102.3 11.6 151 15-209 139-290 (967)
230 PRK02889 tolB translocation pr 99.3 3.9E-10 8.5E-15 91.7 17.0 183 8-237 238-425 (427)
231 KOG0280 Uncharacterized conser 99.3 9E-10 2E-14 81.1 16.9 183 11-237 71-264 (339)
232 KOG4497 Uncharacterized conser 99.3 1.2E-11 2.6E-16 92.3 7.1 142 14-195 13-156 (447)
233 KOG1354 Serine/threonine prote 99.2 1.2E-10 2.5E-15 87.5 10.8 81 10-90 26-118 (433)
234 KOG0974 WD-repeat protein WDR6 99.2 4.4E-11 9.5E-16 100.8 9.5 117 5-140 171-289 (967)
235 KOG0644 Uncharacterized conser 99.2 2E-12 4.3E-17 106.7 1.5 117 50-207 184-300 (1113)
236 KOG4547 WD40 repeat-containing 99.2 2.6E-09 5.6E-14 85.4 18.3 153 21-212 70-225 (541)
237 PRK04922 tolB translocation pr 99.2 2E-09 4.3E-14 87.8 18.4 181 7-236 245-432 (433)
238 KOG2041 WD40 repeat protein [G 99.2 2.6E-10 5.6E-15 93.3 12.5 121 10-139 15-145 (1189)
239 PRK00178 tolB translocation pr 99.2 2.3E-09 5E-14 87.5 18.2 184 5-239 194-386 (430)
240 KOG1240 Protein kinase contain 99.2 5.1E-10 1.1E-14 96.3 14.6 171 45-238 1037-1207(1431)
241 PRK01029 tolB translocation pr 99.2 6.9E-09 1.5E-13 84.3 20.1 192 7-240 228-428 (428)
242 KOG3881 Uncharacterized conser 99.2 2.5E-10 5.4E-15 86.9 10.7 115 11-140 204-321 (412)
243 PF02239 Cytochrom_D1: Cytochr 99.2 1.8E-08 4E-13 80.0 20.5 176 22-238 6-183 (369)
244 PRK04792 tolB translocation pr 99.2 6.8E-09 1.5E-13 84.9 18.1 157 7-207 215-380 (448)
245 PF10282 Lactonase: Lactonase, 99.1 5.3E-07 1.2E-11 71.5 27.9 202 11-239 88-304 (345)
246 KOG4497 Uncharacterized conser 99.1 1.8E-10 4E-15 86.1 7.5 103 10-129 49-153 (447)
247 PRK05137 tolB translocation pr 99.1 1.9E-08 4.1E-13 82.2 18.5 159 31-239 182-346 (435)
248 KOG4190 Uncharacterized conser 99.1 2.4E-10 5.3E-15 91.1 7.1 174 5-210 731-909 (1034)
249 KOG3914 WD repeat protein WDR4 99.1 3E-09 6.4E-14 81.4 12.4 161 11-212 64-228 (390)
250 PF10282 Lactonase: Lactonase, 99.1 8.8E-07 1.9E-11 70.2 26.7 201 11-239 38-257 (345)
251 PF02239 Cytochrom_D1: Cytochr 99.1 5.1E-08 1.1E-12 77.5 19.6 156 13-209 40-204 (369)
252 PRK01029 tolB translocation pr 99.1 2.8E-08 6E-13 80.8 18.2 189 9-239 184-383 (428)
253 KOG1409 Uncharacterized conser 99.1 4.3E-10 9.2E-15 84.5 6.9 89 4-98 192-280 (404)
254 KOG2695 WD40 repeat protein [G 99.0 7.7E-10 1.7E-14 83.2 7.4 131 9-154 252-385 (425)
255 COG2706 3-carboxymuconate cycl 99.0 4.6E-07 9.9E-12 69.0 21.9 198 13-238 92-302 (346)
256 PF00400 WD40: WD domain, G-be 99.0 2.8E-09 6E-14 55.9 7.0 39 46-86 1-39 (39)
257 KOG2066 Vacuolar assembly/sort 99.0 1.7E-08 3.7E-13 83.7 14.7 164 5-207 54-233 (846)
258 KOG2315 Predicted translation 99.0 8E-08 1.7E-12 76.7 16.8 153 14-209 222-392 (566)
259 PF00400 WD40: WD domain, G-be 99.0 3.5E-09 7.6E-14 55.5 6.3 39 97-137 1-39 (39)
260 KOG0309 Conserved WD40 repeat- 98.9 9.6E-10 2.1E-14 90.3 5.0 124 5-141 110-234 (1081)
261 TIGR02800 propeller_TolB tol-p 98.9 1.8E-07 4E-12 76.1 17.8 147 6-193 230-385 (417)
262 KOG4532 WD40-like repeat conta 98.9 2.3E-07 5E-12 68.0 15.6 186 14-238 72-262 (344)
263 PRK00178 tolB translocation pr 98.9 2.8E-07 6E-12 75.4 18.3 179 8-237 241-428 (430)
264 PF15492 Nbas_N: Neuroblastoma 98.9 2.3E-06 5.1E-11 63.4 20.3 179 12-209 46-261 (282)
265 KOG1064 RAVE (regulator of V-A 98.9 3.1E-09 6.6E-14 94.8 5.9 147 10-210 2252-2401(2439)
266 KOG1354 Serine/threonine prote 98.9 2.2E-08 4.7E-13 75.6 9.3 181 7-209 162-361 (433)
267 KOG2695 WD40 repeat protein [G 98.8 2.2E-08 4.8E-13 75.6 8.6 150 27-210 230-379 (425)
268 COG5170 CDC55 Serine/threonine 98.8 1.6E-08 3.5E-13 75.4 7.6 81 10-90 27-119 (460)
269 COG2706 3-carboxymuconate cycl 98.8 1E-05 2.2E-10 61.9 22.5 201 7-238 37-255 (346)
270 PRK04792 tolB translocation pr 98.8 6.1E-07 1.3E-11 73.6 17.5 175 10-237 262-447 (448)
271 PF04762 IKI3: IKI3 family; I 98.8 9.8E-07 2.1E-11 77.8 19.7 190 7-237 118-359 (928)
272 KOG2314 Translation initiation 98.8 3.4E-07 7.3E-12 73.4 14.9 108 13-140 214-335 (698)
273 KOG2315 Predicted translation 98.8 1.7E-07 3.6E-12 74.9 12.4 111 9-140 270-391 (566)
274 KOG1409 Uncharacterized conser 98.8 4E-07 8.8E-12 68.9 13.7 170 9-208 68-271 (404)
275 KOG4532 WD40-like repeat conta 98.8 1.3E-06 2.9E-11 64.1 15.9 153 23-210 130-285 (344)
276 KOG0309 Conserved WD40 repeat- 98.8 3.7E-08 7.9E-13 81.3 8.7 167 11-213 69-238 (1081)
277 KOG1912 WD40 repeat protein [G 98.7 6E-07 1.3E-11 74.8 14.8 159 11-208 17-187 (1062)
278 KOG1064 RAVE (regulator of V-A 98.7 6.6E-08 1.4E-12 86.7 9.8 156 10-210 2209-2369(2439)
279 PF11768 DUF3312: Protein of u 98.7 8.2E-06 1.8E-10 66.2 20.2 145 57-237 206-368 (545)
280 KOG3914 WD repeat protein WDR4 98.7 5.2E-08 1.1E-12 74.7 7.4 80 52-143 147-227 (390)
281 KOG4714 Nucleoporin [Nuclear s 98.7 2.7E-08 5.8E-13 72.4 5.0 155 16-208 96-255 (319)
282 COG4946 Uncharacterized protei 98.7 8.5E-06 1.8E-10 64.6 19.0 152 17-210 327-480 (668)
283 KOG2041 WD40 repeat protein [G 98.7 2.7E-07 5.9E-12 76.2 10.4 125 1-140 63-187 (1189)
284 PRK04043 tolB translocation pr 98.7 1.1E-05 2.5E-10 65.4 19.5 112 11-140 189-310 (419)
285 PF11768 DUF3312: Protein of u 98.6 2.5E-06 5.3E-11 69.2 14.3 74 7-89 257-330 (545)
286 KOG1334 WD40 repeat protein [G 98.6 3.6E-07 7.8E-12 72.0 9.1 133 48-211 134-267 (559)
287 KOG4714 Nucleoporin [Nuclear s 98.5 2.2E-07 4.8E-12 67.7 6.3 75 10-89 180-255 (319)
288 KOG1275 PAB-dependent poly(A) 98.5 8.2E-07 1.8E-11 75.2 10.3 147 19-205 185-340 (1118)
289 PLN02919 haloacid dehalogenase 98.5 2.9E-05 6.3E-10 70.0 20.5 166 13-210 686-891 (1057)
290 PF04762 IKI3: IKI3 family; I 98.5 2.3E-05 5E-10 69.4 18.2 157 8-206 208-378 (928)
291 KOG1275 PAB-dependent poly(A) 98.4 9.8E-06 2.1E-10 68.9 13.8 170 21-239 147-325 (1118)
292 COG4946 Uncharacterized protei 98.4 4.9E-05 1.1E-09 60.4 16.8 117 7-140 357-478 (668)
293 KOG1645 RING-finger-containing 98.4 6.9E-06 1.5E-10 63.6 11.9 80 5-91 189-269 (463)
294 KOG1912 WD40 repeat protein [G 98.4 3.2E-05 6.9E-10 64.9 15.7 124 3-139 49-186 (1062)
295 COG5354 Uncharacterized protei 98.4 4.6E-05 1E-09 60.9 15.5 188 10-240 72-288 (561)
296 KOG4190 Uncharacterized conser 98.4 2.9E-06 6.2E-11 68.5 8.9 160 49-239 728-889 (1034)
297 KOG1832 HIV-1 Vpr-binding prot 98.3 4.1E-07 8.8E-12 76.9 3.9 119 4-141 1096-1216(1516)
298 KOG2114 Vacuolar assembly/sort 98.3 9.4E-05 2E-09 62.8 17.5 184 16-238 30-226 (933)
299 PF15492 Nbas_N: Neuroblastoma 98.3 0.00055 1.2E-08 51.1 22.2 167 15-208 3-189 (282)
300 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00087 1.9E-08 52.9 21.1 67 17-90 53-138 (352)
301 PRK04043 tolB translocation pr 98.3 0.00031 6.8E-09 57.2 18.8 114 7-140 230-358 (419)
302 KOG1920 IkappaB kinase complex 98.3 7.2E-05 1.6E-09 65.7 15.3 176 8-220 108-333 (1265)
303 PF08450 SGL: SMP-30/Gluconola 98.2 0.001 2.2E-08 50.2 24.3 180 12-237 42-236 (246)
304 KOG1645 RING-finger-containing 98.2 1.2E-05 2.5E-10 62.4 9.0 86 46-142 183-269 (463)
305 KOG1008 Uncharacterized conser 98.2 4.9E-07 1.1E-11 73.8 1.2 171 6-208 99-276 (783)
306 COG5354 Uncharacterized protei 98.2 0.00016 3.4E-09 58.0 14.5 154 14-209 227-397 (561)
307 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00054 1.2E-08 44.1 14.6 103 12-135 2-110 (111)
308 KOG0882 Cyclophilin-related pe 98.2 2.4E-05 5.2E-10 61.6 9.5 183 4-211 48-235 (558)
309 KOG0882 Cyclophilin-related pe 98.1 2.9E-05 6.4E-10 61.1 9.9 201 1-239 1-214 (558)
310 PF07433 DUF1513: Protein of u 98.1 0.00072 1.6E-08 51.8 16.8 161 15-210 56-250 (305)
311 PF08450 SGL: SMP-30/Gluconola 98.1 0.002 4.4E-08 48.6 19.2 139 10-176 86-233 (246)
312 KOG1920 IkappaB kinase complex 98.1 0.00049 1.1E-08 60.7 17.2 192 9-238 68-301 (1265)
313 COG5170 CDC55 Serine/threonine 98.1 1.3E-05 2.8E-10 60.3 6.9 129 6-141 169-311 (460)
314 KOG2314 Translation initiation 98.1 0.00033 7.1E-09 56.9 14.5 101 108-238 446-549 (698)
315 PLN02919 haloacid dehalogenase 98.0 0.00023 5E-09 64.3 14.4 114 12-140 742-889 (1057)
316 KOG1832 HIV-1 Vpr-binding prot 98.0 3.5E-06 7.7E-11 71.5 2.5 150 47-239 1092-1243(1516)
317 smart00320 WD40 WD40 repeats. 98.0 3.7E-05 7.9E-10 38.9 5.7 38 47-86 3-40 (40)
318 KOG2066 Vacuolar assembly/sort 98.0 0.00016 3.6E-09 60.9 11.9 147 11-210 41-190 (846)
319 KOG1008 Uncharacterized conser 98.0 1.1E-06 2.4E-11 71.8 -0.6 189 11-237 58-254 (783)
320 KOG3617 WD40 and TPR repeat-co 97.9 0.00027 5.9E-09 60.3 12.5 72 11-89 61-132 (1416)
321 KOG4640 Anaphase-promoting com 97.9 6.8E-05 1.5E-09 61.5 8.7 94 9-117 20-115 (665)
322 KOG3621 WD40 repeat-containing 97.9 0.00014 3E-09 60.5 9.8 121 10-140 34-155 (726)
323 PF08596 Lgl_C: Lethal giant l 97.9 0.0069 1.5E-07 48.9 19.0 162 58-238 3-205 (395)
324 KOG3617 WD40 and TPR repeat-co 97.9 6.6E-05 1.4E-09 63.8 7.5 108 14-139 20-131 (1416)
325 smart00320 WD40 WD40 repeats. 97.9 6.1E-05 1.3E-09 38.1 5.0 38 98-137 3-40 (40)
326 KOG4640 Anaphase-promoting com 97.9 0.00012 2.6E-09 60.1 8.8 74 57-142 21-95 (665)
327 PF04053 Coatomer_WDAD: Coatom 97.7 0.0042 9.2E-08 50.8 15.9 147 5-209 28-175 (443)
328 PF07433 DUF1513: Protein of u 97.7 0.014 3.1E-07 44.8 19.2 105 9-128 4-117 (305)
329 PF12234 Rav1p_C: RAVE protein 97.6 0.011 2.3E-07 50.2 17.2 135 46-207 19-156 (631)
330 KOG2114 Vacuolar assembly/sort 97.6 0.0027 5.9E-08 54.4 13.6 147 63-239 30-184 (933)
331 PF06977 SdiA-regulated: SdiA- 97.6 0.016 3.5E-07 43.6 19.4 180 3-207 15-201 (248)
332 KOG3621 WD40 repeat-containing 97.6 0.0013 2.9E-08 54.9 11.0 124 55-208 32-155 (726)
333 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0077 1.7E-07 38.8 14.3 68 59-139 2-71 (111)
334 PF08596 Lgl_C: Lethal giant l 97.6 0.03 6.6E-07 45.3 19.1 76 8-89 85-174 (395)
335 PRK02888 nitrous-oxide reducta 97.5 0.0085 1.8E-07 50.5 15.3 79 107-208 320-405 (635)
336 TIGR03300 assembly_YfgL outer 97.5 0.01 2.2E-07 47.8 15.7 108 21-156 241-349 (377)
337 TIGR02658 TTQ_MADH_Hv methylam 97.5 0.031 6.7E-07 44.3 18.3 101 31-155 27-146 (352)
338 TIGR03300 assembly_YfgL outer 97.5 0.0093 2E-07 48.0 14.9 152 20-214 64-215 (377)
339 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00093 2E-08 36.0 5.2 31 9-39 11-41 (47)
340 PF13360 PQQ_2: PQQ-like domai 97.3 0.01 2.2E-07 44.3 12.8 144 30-215 2-148 (238)
341 KOG2079 Vacuolar assembly/sort 97.3 0.019 4.1E-07 50.8 15.3 71 9-88 130-203 (1206)
342 KOG4441 Proteins containing BT 97.3 0.0077 1.7E-07 51.1 12.8 159 20-217 332-507 (571)
343 PF13360 PQQ_2: PQQ-like domai 97.2 0.048 1E-06 40.7 15.7 147 21-214 76-237 (238)
344 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0014 3E-08 35.4 4.8 32 170-212 14-45 (47)
345 KOG4441 Proteins containing BT 97.2 0.018 4E-07 48.9 13.4 160 20-218 380-555 (571)
346 COG0823 TolB Periplasmic compo 97.1 0.021 4.6E-07 46.6 12.9 111 11-139 194-312 (425)
347 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.029 6.3E-07 44.8 13.5 103 18-138 1-130 (353)
348 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.14 3E-06 41.7 18.9 158 21-207 37-204 (418)
349 PF08553 VID27: VID27 cytoplas 97.0 0.08 1.7E-06 46.4 15.7 101 23-139 544-647 (794)
350 KOG2079 Vacuolar assembly/sort 97.0 0.0042 9E-08 54.6 7.9 104 20-138 98-202 (1206)
351 PF12234 Rav1p_C: RAVE protein 97.0 0.06 1.3E-06 45.9 14.5 134 80-239 1-141 (631)
352 PF00780 CNH: CNH domain; Int 96.9 0.14 2.9E-06 39.3 15.5 140 70-237 7-149 (275)
353 PHA02713 hypothetical protein; 96.8 0.029 6.3E-07 47.7 11.6 155 20-217 351-541 (557)
354 PF15390 DUF4613: Domain of un 96.7 0.081 1.8E-06 44.1 13.1 143 57-240 20-169 (671)
355 KOG2444 WD40 repeat protein [G 96.7 0.0071 1.5E-07 44.0 6.4 104 21-139 70-177 (238)
356 PRK02888 nitrous-oxide reducta 96.7 0.066 1.4E-06 45.4 12.7 80 56-140 320-405 (635)
357 KOG2395 Protein involved in va 96.7 0.089 1.9E-06 43.3 12.8 106 24-139 349-459 (644)
358 PHA03098 kelch-like protein; P 96.6 0.13 2.8E-06 43.6 14.0 162 20-220 342-522 (534)
359 PHA02713 hypothetical protein; 96.5 0.1 2.2E-06 44.5 13.1 95 20-130 303-408 (557)
360 KOG4499 Ca2+-binding protein R 96.5 0.14 2.9E-06 37.9 11.6 134 11-161 110-257 (310)
361 PF08553 VID27: VID27 cytoplas 96.5 0.16 3.5E-06 44.6 14.0 137 29-207 502-647 (794)
362 PF12657 TFIIIC_delta: Transcr 96.4 0.043 9.3E-07 39.0 8.9 43 169-216 87-131 (173)
363 PRK13616 lipoprotein LpqB; Pro 96.4 0.16 3.4E-06 43.5 13.5 105 11-136 351-473 (591)
364 COG0823 TolB Periplasmic compo 96.3 0.15 3.1E-06 41.9 12.3 112 13-140 241-359 (425)
365 PF04841 Vps16_N: Vps16, N-ter 96.2 0.54 1.2E-05 38.5 17.6 67 14-89 33-110 (410)
366 PF00780 CNH: CNH domain; Int 96.2 0.4 8.6E-06 36.7 16.7 156 18-210 4-168 (275)
367 COG3204 Uncharacterized protei 95.9 0.54 1.2E-05 36.0 17.0 183 3-209 79-265 (316)
368 PF10313 DUF2415: Uncharacteri 95.9 0.037 8E-07 29.0 4.7 30 10-39 1-33 (43)
369 PHA02790 Kelch-like protein; P 95.9 0.36 7.8E-06 40.4 13.1 151 19-209 317-472 (480)
370 KOG3630 Nuclear pore complex, 95.9 0.058 1.3E-06 48.2 8.4 119 11-139 102-228 (1405)
371 PRK11138 outer membrane biogen 95.8 0.82 1.8E-05 37.2 16.0 98 21-140 256-354 (394)
372 PF04053 Coatomer_WDAD: Coatom 95.8 0.89 1.9E-05 37.6 15.5 96 21-135 117-219 (443)
373 PRK13616 lipoprotein LpqB; Pro 95.8 0.88 1.9E-05 39.1 15.1 151 57-238 350-508 (591)
374 COG3391 Uncharacterized conser 95.8 0.82 1.8E-05 37.1 19.8 110 13-140 77-191 (381)
375 PF14583 Pectate_lyase22: Olig 95.8 0.81 1.8E-05 36.7 16.8 95 16-124 42-139 (386)
376 PRK11138 outer membrane biogen 95.6 0.49 1.1E-05 38.5 12.7 106 20-141 68-180 (394)
377 PF15390 DUF4613: Domain of un 95.6 1.2 2.6E-05 37.6 16.4 125 56-207 56-186 (671)
378 PF03178 CPSF_A: CPSF A subuni 95.5 0.94 2E-05 35.7 20.6 150 21-208 42-203 (321)
379 PF10168 Nup88: Nuclear pore c 95.4 1.6 3.5E-05 38.5 15.5 97 107-213 84-185 (717)
380 PF02897 Peptidase_S9_N: Proly 95.4 0.88 1.9E-05 37.2 13.5 113 12-140 126-261 (414)
381 PRK13684 Ycf48-like protein; P 95.3 1.2 2.5E-05 35.5 15.6 109 10-134 173-283 (334)
382 KOG4649 PQQ (pyrrolo-quinoline 95.2 0.96 2.1E-05 34.1 14.5 98 20-134 62-160 (354)
383 COG3490 Uncharacterized protei 95.2 1.1 2.3E-05 34.4 12.0 56 16-77 120-180 (366)
384 PF10168 Nup88: Nuclear pore c 95.1 2.1 4.6E-05 37.7 18.2 78 11-90 86-181 (717)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 0.33 7.1E-06 39.6 9.8 45 8-57 306-350 (415)
386 KOG3630 Nuclear pore complex, 95.1 0.26 5.7E-06 44.4 9.7 145 58-235 102-252 (1405)
387 PF03178 CPSF_A: CPSF A subuni 95.0 1.4 2.9E-05 34.8 17.2 114 8-139 87-202 (321)
388 KOG2377 Uncharacterized conser 94.9 0.64 1.4E-05 37.9 10.7 124 78-237 41-164 (657)
389 PF06977 SdiA-regulated: SdiA- 94.9 1.2 2.6E-05 33.7 17.7 132 51-208 16-148 (248)
390 COG3386 Gluconolactonase [Carb 94.8 1 2.3E-05 35.2 11.7 96 11-116 164-263 (307)
391 PF00930 DPPIV_N: Dipeptidyl p 94.7 0.29 6.2E-06 39.2 8.7 50 80-140 23-72 (353)
392 PF08728 CRT10: CRT10; InterP 94.7 2.7 5.9E-05 36.8 16.3 166 21-206 49-245 (717)
393 COG3391 Uncharacterized conser 94.7 1.9 4.2E-05 34.9 20.6 157 11-209 117-285 (381)
394 PF14870 PSII_BNR: Photosynthe 94.7 1.6 3.5E-05 34.1 16.2 111 9-133 144-255 (302)
395 COG3386 Gluconolactonase [Carb 94.6 1.7 3.6E-05 34.1 14.6 131 11-156 112-253 (307)
396 PF12657 TFIIIC_delta: Transcr 94.6 0.45 9.7E-06 33.8 8.6 45 108-153 86-134 (173)
397 COG3204 Uncharacterized protei 94.4 1.8 3.9E-05 33.3 14.4 129 53-208 82-211 (316)
398 PF10313 DUF2415: Uncharacteri 94.3 0.15 3.3E-06 26.7 4.1 32 109-140 2-34 (43)
399 PF10647 Gmad1: Lipoprotein Lp 94.3 1.8 3.8E-05 32.9 16.4 112 11-139 25-144 (253)
400 KOG2395 Protein involved in va 94.3 2.7 5.9E-05 35.1 13.1 112 12-139 378-500 (644)
401 KOG4649 PQQ (pyrrolo-quinoline 94.2 1.9 4E-05 32.7 15.0 102 21-140 23-124 (354)
402 KOG2444 WD40 repeat protein [G 94.0 0.11 2.5E-06 38.0 4.4 64 70-140 70-133 (238)
403 PF14781 BBS2_N: Ciliary BBSom 93.7 1.4 3E-05 29.7 10.0 94 114-234 5-100 (136)
404 cd00216 PQQ_DH Dehydrogenases 93.6 3.1 6.7E-05 35.0 13.0 61 21-90 61-130 (488)
405 PF07995 GSDH: Glucose / Sorbo 93.5 2 4.3E-05 34.1 11.1 51 12-67 4-59 (331)
406 PF04841 Vps16_N: Vps16, N-ter 93.5 3.7 8E-05 33.7 15.2 30 10-40 81-110 (410)
407 PHA03098 kelch-like protein; P 93.4 4 8.8E-05 34.7 13.4 105 20-140 294-415 (534)
408 TIGR02604 Piru_Ver_Nterm putat 93.2 3.8 8.2E-05 33.1 15.8 109 11-128 15-142 (367)
409 PF05694 SBP56: 56kDa selenium 93.2 3.4 7.3E-05 33.9 11.7 103 30-143 221-346 (461)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 93.2 2.4 5.2E-05 34.7 11.1 81 51-140 302-399 (415)
411 COG4590 ABC-type uncharacteriz 93.1 0.82 1.8E-05 37.4 8.1 166 10-210 221-389 (733)
412 KOG4499 Ca2+-binding protein R 92.6 3.3 7.2E-05 30.9 10.9 95 13-116 161-262 (310)
413 KOG4460 Nuclear pore complex, 92.5 5.6 0.00012 33.4 12.4 97 108-215 104-206 (741)
414 PF10647 Gmad1: Lipoprotein Lp 92.5 3.7 8.1E-05 31.2 16.5 148 58-239 25-178 (253)
415 KOG2377 Uncharacterized conser 92.5 5.3 0.00012 32.9 11.8 114 14-139 27-140 (657)
416 PF14761 HPS3_N: Hermansky-Pud 92.2 3.5 7.6E-05 30.3 17.9 109 22-140 29-164 (215)
417 PF14870 PSII_BNR: Photosynthe 91.8 5.2 0.00011 31.3 20.4 152 45-237 135-286 (302)
418 PHA02790 Kelch-like protein; P 91.6 3.5 7.5E-05 34.7 10.7 103 19-140 361-471 (480)
419 PF06433 Me-amine-dh_H: Methyl 91.4 6.1 0.00013 31.3 14.3 155 22-210 148-323 (342)
420 KOG1916 Nuclear protein, conta 91.3 0.16 3.4E-06 44.7 2.4 135 53-207 129-265 (1283)
421 PLN02153 epithiospecifier prot 91.2 6.5 0.00014 31.3 13.5 30 20-52 85-119 (341)
422 KOG4460 Nuclear pore complex, 90.4 6.6 0.00014 33.0 10.5 83 58-142 105-201 (741)
423 PF07569 Hira: TUP1-like enhan 90.1 1.9 4.1E-05 32.0 7.0 22 120-141 21-42 (219)
424 cd00216 PQQ_DH Dehydrogenases 89.2 13 0.00027 31.5 14.3 26 186-216 303-328 (488)
425 PF14761 HPS3_N: Hermansky-Pud 89.0 7.4 0.00016 28.6 13.3 119 71-209 29-165 (215)
426 PF07676 PD40: WD40-like Beta 88.8 1.8 3.8E-05 21.9 4.4 31 6-36 5-38 (39)
427 PF10214 Rrn6: RNA polymerase 88.3 19 0.00041 32.5 15.4 120 11-140 147-277 (765)
428 COG4590 ABC-type uncharacteriz 88.2 6.6 0.00014 32.4 9.0 108 21-141 280-388 (733)
429 PF07995 GSDH: Glucose / Sorbo 88.0 12 0.00026 29.8 11.3 25 110-137 4-28 (331)
430 KOG1916 Nuclear protein, conta 87.8 0.33 7.2E-06 42.8 1.8 111 17-140 243-375 (1283)
431 PF07569 Hira: TUP1-like enhan 87.7 3 6.6E-05 30.9 6.7 67 70-139 22-95 (219)
432 PF05694 SBP56: 56kDa selenium 87.2 15 0.00034 30.2 19.1 172 14-212 134-347 (461)
433 PRK14131 N-acetylneuraminic ac 87.0 15 0.00032 29.8 12.0 28 20-50 84-122 (376)
434 KOG1897 Damage-specific DNA bi 87.0 24 0.00052 32.2 17.7 113 11-140 776-899 (1096)
435 PF08728 CRT10: CRT10; InterP 86.8 13 0.00029 32.7 10.6 121 11-138 102-245 (717)
436 PF12768 Rax2: Cortical protei 86.7 13 0.00028 28.8 13.3 97 31-139 16-123 (281)
437 PF05096 Glu_cyclase_2: Glutam 86.6 13 0.00027 28.5 16.9 108 12-140 47-158 (264)
438 TIGR03606 non_repeat_PQQ dehyd 86.5 18 0.00039 30.2 14.0 55 10-67 30-89 (454)
439 PF11715 Nup160: Nucleoporin N 86.5 5.3 0.00012 34.2 8.4 69 19-90 156-250 (547)
440 TIGR03548 mutarot_permut cycli 85.9 15 0.00033 28.9 14.8 62 70-140 124-195 (323)
441 PLN00033 photosystem II stabil 85.8 18 0.00039 29.7 16.1 109 12-136 241-353 (398)
442 TIGR03547 muta_rot_YjhT mutatr 85.6 16 0.00036 29.0 12.9 42 80-130 168-210 (346)
443 COG5290 IkappaB kinase complex 85.3 14 0.00029 33.0 9.8 32 7-38 110-141 (1243)
444 COG3490 Uncharacterized protei 85.1 16 0.00034 28.4 14.0 103 59-191 70-180 (366)
445 PF05935 Arylsulfotrans: Aryls 84.5 23 0.00051 29.8 11.8 53 62-128 153-208 (477)
446 KOG1900 Nuclear pore complex, 84.2 38 0.00083 32.0 13.8 102 28-139 96-205 (1311)
447 PLN02193 nitrile-specifier pro 83.5 26 0.00056 29.5 12.6 106 20-140 228-352 (470)
448 COG5290 IkappaB kinase complex 83.1 6.9 0.00015 34.7 7.3 96 56-180 246-349 (1243)
449 PF14781 BBS2_N: Ciliary BBSom 83.1 12 0.00026 25.3 12.0 118 13-140 2-126 (136)
450 TIGR02276 beta_rpt_yvtn 40-res 83.0 4.5 9.9E-05 20.5 5.8 31 19-54 1-32 (42)
451 PF14727 PHTB1_N: PTHB1 N-term 82.3 27 0.00058 28.9 13.9 121 70-208 37-164 (418)
452 PF01436 NHL: NHL repeat; Int 82.3 3.8 8.2E-05 19.1 3.4 25 12-36 4-28 (28)
453 TIGR03547 muta_rot_YjhT mutatr 82.3 23 0.00051 28.2 12.2 89 31-130 168-267 (346)
454 PF08954 DUF1900: Domain of un 81.3 9.1 0.0002 26.0 6.1 51 173-236 16-66 (136)
455 TIGR02604 Piru_Ver_Nterm putat 81.1 28 0.0006 28.2 10.5 63 11-77 73-142 (367)
456 PF02897 Peptidase_S9_N: Proly 81.0 29 0.00063 28.4 16.2 69 60-141 127-212 (414)
457 KOG2247 WD40 repeat-containing 80.3 0.11 2.5E-06 42.3 -3.7 110 13-141 38-149 (615)
458 TIGR03548 mutarot_permut cycli 80.0 27 0.00059 27.5 11.4 97 20-130 123-233 (323)
459 COG5276 Uncharacterized conser 79.4 28 0.0006 27.2 16.9 113 12-141 89-201 (370)
460 PF11715 Nup160: Nucleoporin N 79.3 4.7 0.0001 34.5 5.3 30 11-40 216-249 (547)
461 PF10395 Utp8: Utp8 family; I 79.3 44 0.00095 29.4 17.1 32 8-39 128-159 (670)
462 PRK13684 Ycf48-like protein; P 79.0 31 0.00067 27.5 11.9 115 10-138 215-330 (334)
463 PF06433 Me-amine-dh_H: Methyl 78.5 32 0.0007 27.4 17.6 131 31-208 17-166 (342)
464 PRK10115 protease 2; Provision 77.6 52 0.0011 29.3 12.0 69 11-89 128-208 (686)
465 PRK14131 N-acetylneuraminic ac 76.9 38 0.00083 27.4 13.2 32 20-52 38-70 (376)
466 PF12341 DUF3639: Protein of u 76.6 6.4 0.00014 18.3 3.8 26 10-37 2-27 (27)
467 PF07250 Glyoxal_oxid_N: Glyox 76.3 31 0.00068 26.1 12.4 118 16-140 73-198 (243)
468 PLN02193 nitrile-specifier pro 74.6 51 0.0011 27.8 15.5 62 70-140 329-411 (470)
469 KOG1897 Damage-specific DNA bi 73.8 75 0.0016 29.3 17.6 123 8-139 529-659 (1096)
470 PLN00033 photosystem II stabil 72.8 52 0.0011 27.1 12.1 112 10-136 281-396 (398)
471 KOG2280 Vacuolar assembly/sort 72.7 70 0.0015 28.5 12.5 66 15-89 38-113 (829)
472 PF14517 Tachylectin: Tachylec 71.8 40 0.00086 25.3 9.0 182 26-239 2-190 (229)
473 KOG3522 Predicted guanine nucl 71.0 39 0.00084 30.4 8.4 73 56-140 626-698 (925)
474 PF12768 Rax2: Cortical protei 70.8 48 0.001 25.8 12.5 100 8-117 35-146 (281)
475 smart00564 PQQ beta-propeller 70.4 7 0.00015 18.5 2.6 24 186-214 8-31 (33)
476 KOG3616 Selective LIM binding 69.9 11 0.00025 33.3 5.1 70 9-88 14-83 (1636)
477 KOG1983 Tomosyn and related SN 69.2 1E+02 0.0022 29.0 11.4 29 11-39 37-65 (993)
478 PF14269 Arylsulfotran_2: Aryl 68.5 34 0.00073 26.9 7.2 70 11-87 145-219 (299)
479 COG5167 VID27 Protein involved 68.4 16 0.00035 30.8 5.5 58 72-139 575-632 (776)
480 TIGR03118 PEPCTERM_chp_1 conse 68.3 57 0.0012 25.7 13.6 126 12-139 25-170 (336)
481 KOG1896 mRNA cleavage and poly 68.2 1.1E+02 0.0024 29.0 11.5 154 22-210 1047-1216(1366)
482 KOG3616 Selective LIM binding 67.9 15 0.00032 32.6 5.3 68 57-138 15-82 (1636)
483 PF14583 Pectate_lyase22: Olig 67.6 67 0.0015 26.2 9.6 67 63-140 42-111 (386)
484 PLN02153 epithiospecifier prot 67.2 62 0.0014 25.7 15.3 40 81-129 218-260 (341)
485 PF05096 Glu_cyclase_2: Glutam 65.8 59 0.0013 25.0 14.7 134 28-191 107-250 (264)
486 TIGR03074 PQQ_membr_DH membran 63.6 1.2E+02 0.0025 27.6 12.3 18 199-216 336-353 (764)
487 KOG1896 mRNA cleavage and poly 61.6 1.2E+02 0.0026 28.8 9.8 116 8-139 1096-1213(1366)
488 PF11635 Med16: Mediator compl 60.2 1.3E+02 0.0029 27.2 18.5 32 108-141 260-291 (753)
489 KOG2247 WD40 repeat-containing 59.1 0.91 2E-05 37.4 -2.9 104 11-131 76-180 (615)
490 PF02333 Phytase: Phytase; In 59.0 1E+02 0.0022 25.3 19.9 157 31-209 127-292 (381)
491 PF13570 PQQ_3: PQQ-like domai 55.1 24 0.00051 17.8 3.0 20 120-139 20-39 (40)
492 PF14157 YmzC: YmzC-like prote 53.6 42 0.0009 19.3 4.1 29 186-219 31-59 (63)
493 PRK13613 lipoprotein LpqB; Pro 53.3 1.6E+02 0.0034 25.9 11.9 77 11-89 456-538 (599)
494 KOG2109 WD40 repeat protein [G 52.3 7.1 0.00015 33.7 1.0 76 3-80 309-390 (788)
495 PF11635 Med16: Mediator compl 51.5 76 0.0016 28.7 7.2 68 9-83 259-345 (753)
496 TIGR03606 non_repeat_PQQ dehyd 50.9 1.5E+02 0.0033 25.0 14.7 56 56-118 29-89 (454)
497 PF14779 BBS1: Ciliary BBSome 50.6 1.1E+02 0.0025 23.4 7.5 71 9-84 176-254 (257)
498 PF07250 Glyoxal_oxid_N: Glyox 50.3 62 0.0013 24.6 5.6 49 83-140 49-100 (243)
499 PF01731 Arylesterase: Arylest 49.9 56 0.0012 20.2 4.5 29 171-208 57-85 (86)
500 PF01011 PQQ: PQQ enzyme repea 49.8 18 0.00039 18.1 2.0 24 187-215 3-26 (38)
No 1
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-35 Score=211.91 Aligned_cols=225 Identities=36% Similarity=0.665 Sum_probs=195.1
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.|.+-|+++.|++.|+++|+|+.|++|+|||... ..+++.+....+.|.+.|..+.|.++.+|+.+++++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~-~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS-DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccC-CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5888899999999999999999999999999743 344899999999999999999999999999999999999999999
Q ss_pred eeec--cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 87 EIVE--DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.... +..+.+|....++...+..|+.|+|.|..-|..+++++.||.++||+...+.++..|.++.+++.... +.+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~---pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID---PPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC---Ccc
Confidence 8533 33457899999999999999999999988899999999999999999999999999999998874433 222
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
+......||+|+|..- ..++||+|+.+|....+.++||......++|....+|. +|+++|++|+|.|+.||
T Consensus 167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~---d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP---DHTDPIRDISWAPNIGR 237 (361)
T ss_pred cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCcceeeeehhcC---CCCCcceeeeeccccCC
Confidence 2222334999997664 36699999988777778999999999888998888887 78889999999999987
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-35 Score=218.91 Aligned_cols=187 Identities=22% Similarity=0.346 Sum_probs=165.6
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|.++|.|++|+|+|++||+|+.|.++|+||+. +..+..+.++|..-|.+++|+|+ |..|++|+.||+|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-----TeTp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-----TETPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIR 182 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-----CCCcceeecCCccEEEEEEECCC--cchhhccccCCeEE
Confidence 478899999999999999999999999999999999 77889999999999999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeec---CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS---STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
+||...+. +.-..+.+|...|++++|.|- +.+++|++++.||.|+|||+.. ..++..+.+|..+|
T Consensus 183 lwdpktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 183 LWDPKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------GTCVRTLSGHTASV 250 (480)
T ss_pred EecCCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC------ceEEEEeccCccce
Confidence 99987763 567788999999999999872 4567899999999999999987 78888999999988
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
. |+.|--.+ +|++|+.| ++|++|+...+.. ..++. ||..+|+.++.|.|
T Consensus 251 T----------CvrwGG~g------liySgS~D-----rtIkvw~a~dG~~----~r~lk---GHahwvN~lalsTd 299 (480)
T KOG0271|consen 251 T----------CVRWGGEG------LIYSGSQD-----RTIKVWRALDGKL----CRELK---GHAHWVNHLALSTD 299 (480)
T ss_pred E----------EEEEcCCc------eEEecCCC-----ceEEEEEccchhH----HHhhc---ccchheeeeeccch
Confidence 8 99997666 89999999 9999999877542 22333 78889999998854
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=223.22 Aligned_cols=188 Identities=19% Similarity=0.285 Sum_probs=169.1
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.|.+|...|..++|+|+|++|+|++.|.+-++||+. +...+....+|...|.+++|.++ |.++++|+.|..-+
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-----tk~ElL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-----TKSELLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGR 328 (459)
T ss_pred hhhcchhhheeeeecCCCceeeecccccchhhcccc-----cchhhHhhcccccccceeEecCC--CceeeccCccchhh
Confidence 477899999999999999999999999999999999 66777788899999999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
|||++++ .++..+.+|...|.+|+|+| +|..|++|+.|++++|||++. ......+..|..-|+
T Consensus 329 vWDlRtg-------r~im~L~gH~k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipAH~nlVS-- 391 (459)
T KOG0272|consen 329 VWDLRTG-------RCIMFLAGHIKEILSVAFSP--NGYHLATGSSDNTCKVWDLRM------RSELYTIPAHSNLVS-- 391 (459)
T ss_pred eeecccC-------cEEEEecccccceeeEeECC--CceEEeecCCCCcEEEeeecc------cccceecccccchhh--
Confidence 9999998 99999999999999999999 999999999999999999997 455667778887777
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.|+|+|.. +.+|++++.| ++++||...+ |.+...+. ||.+.|.+++.+||+.
T Consensus 392 --------~Vk~~p~~----g~fL~TasyD-----~t~kiWs~~~----~~~~ksLa---GHe~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 392 --------QVKYSPQE----GYFLVTASYD-----NTVKIWSTRT----WSPLKSLA---GHEGKVISLDISPDSQ 443 (459)
T ss_pred --------heEecccC----CeEEEEcccC-----cceeeecCCC----cccchhhc---CCccceEEEEeccCCc
Confidence 99999954 3499999999 9999999876 45555555 6777999999999973
No 4
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=199.59 Aligned_cols=200 Identities=20% Similarity=0.362 Sum_probs=177.3
Q ss_pred chhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 3 KAVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
+++++|.+++..++|+|- |..||+|+.|+.|+||+..... ++.+...+. +|+..|.+++|+|. |++|++++.|.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~ 83 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDA 83 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCC--CcEEEEeeccc
Confidence 568899999999999997 8999999999999999997422 577776664 79999999999999 99999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
++.||.-.. .+|+++.++.+|+..|.+++|++ +|.+||++++|..|-||..... ..+++...++.|...|
T Consensus 84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~ded---dEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDED---DEFECIAVLQEHTQDV 153 (312)
T ss_pred eEEEeecCC-----CceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCC---CcEEEEeeeccccccc
Confidence 999998764 56799999999999999999999 9999999999999999998743 3488999999999888
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
. .+.|+|... +|++++.| ++|++|+... ...|.....+. +|+..|++++|+|+|.|
T Consensus 154 K----------~V~WHPt~d-----lL~S~SYD-----nTIk~~~~~~-dddW~c~~tl~---g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 154 K----------HVIWHPTED-----LLFSCSYD-----NTIKVYRDED-DDDWECVQTLD---GHENTVWSLAFDNIGSR 209 (312)
T ss_pred c----------EEEEcCCcc-----eeEEeccC-----CeEEEEeecC-CCCeeEEEEec---CccceEEEEEecCCCce
Confidence 8 899999987 99999999 9999999875 55688888777 57679999999998854
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.5e-35 Score=234.17 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=173.3
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+++.+|.++|..++|+|+.++|++|++|++||+|.+. ++.++-.+++|..+|+++.|+|. |.+|++++.|++.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-----t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tA 517 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-----TWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTA 517 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecc-----cceeEEEecCCCcceeeEEecCC--ceEEEecCCCcee
Confidence 4478999999999999999999999999999999999 88999999999999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++|..... .+++.+.+|-..|.|+.|+| +..|+++|+.|.+|++||..+ +..+..|.+|..+|.
T Consensus 518 rLWs~d~~-------~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~------G~~VRiF~GH~~~V~- 581 (707)
T KOG0263|consen 518 RLWSTDHN-------KPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVST------GNSVRIFTGHKGPVT- 581 (707)
T ss_pred eeeecccC-------CchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCC------CcEEEEecCCCCceE-
Confidence 99999776 89999999999999999999 999999999999999999998 677888999999988
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++|+|.+. +|++|+.| +.|.|||+.++.....+ . +|++.|++|.||.|++
T Consensus 582 ---------al~~Sp~Gr-----~LaSg~ed-----~~I~iWDl~~~~~v~~l----~---~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 582 ---------ALAFSPCGR-----YLASGDED-----GLIKIWDLANGSLVKQL----K---GHTGTIYSLSFSRDGN 632 (707)
T ss_pred ---------EEEEcCCCc-----eEeecccC-----CcEEEEEcCCCcchhhh----h---cccCceeEEEEecCCC
Confidence 999999988 99999999 99999999886533222 2 5788999999999985
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=202.83 Aligned_cols=187 Identities=19% Similarity=0.253 Sum_probs=165.2
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
++.+.+|...|..+..+++|++.++++.|+++++||+. +++..+.|.+|...|.+++|+++ ..++++|+.|.+
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-----~g~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkT 128 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-----TGESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKT 128 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEec-----CCcEEEEEEecCCceEEEEecCC--CceeecCCCcce
Confidence 35678899999999999999999999999999999999 66788899999999999999999 999999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
|++|+... .+..++... +..|.++.|+|+.+..++++++.|++|++||+++ .++.+.+.+|...
T Consensus 129 iklwnt~g--------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 129 IKLWNTLG--------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHSGY 194 (315)
T ss_pred eeeeeecc--------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccccc
Confidence 99999976 455555543 7899999999966688999999999999999998 6777777788777
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
+. .+.++|++. +.++|+.| |.+.+||+..++..+.+ +|...|.+++|+|+
T Consensus 195 v~----------t~~vSpDGs-----lcasGgkd-----g~~~LwdL~~~k~lysl--------~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 195 VN----------TVTVSPDGS-----LCASGGKD-----GEAMLWDLNEGKNLYSL--------EAFDIVNSLCFSPN 244 (315)
T ss_pred EE----------EEEECCCCC-----EEecCCCC-----ceEEEEEccCCceeEec--------cCCCeEeeEEecCC
Confidence 76 999999998 88999998 99999999987764333 47779999999997
No 7
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-34 Score=202.01 Aligned_cols=209 Identities=28% Similarity=0.462 Sum_probs=174.4
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
++-...|++.|..+..+..|++||||+.|++|+||...+++ ..+++.++.+|.++|..+.|.++++|.+|++++.||.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--CceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 34455799999999999999999999999999999998764 2378899999999999999999888999999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
|.||...+ ..|.....+..|...|++++|.|++.|..|++++.||.|.|.+.+.. ..+........|...+
T Consensus 82 VIiWke~~-----g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---g~w~t~ki~~aH~~Gv- 152 (299)
T KOG1332|consen 82 VIIWKEEN-----GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---GGWTTSKIVFAHEIGV- 152 (299)
T ss_pred EEEEecCC-----CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---CCccchhhhhcccccc-
Confidence 99999876 47888889999999999999999999999999999999999999864 1233333334554433
Q ss_pred ccccccceeeeEEEeCCCCC---------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295 162 MFRKASCISASISWNPQKGE---------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV 232 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~---------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v 232 (240)
++++|.|...+ .....|++|++| +.|+||++.++ .|.+...|+ +|++.|+++
T Consensus 153 ---------nsVswapa~~~g~~~~~~~~~~~krlvSgGcD-----n~VkiW~~~~~--~w~~e~~l~---~H~dwVRDV 213 (299)
T KOG1332|consen 153 ---------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-----NLVKIWKFDSD--SWKLERTLE---GHKDWVRDV 213 (299)
T ss_pred ---------ceeeecCcCCCccccccCcccccceeeccCCc-----cceeeeecCCc--chhhhhhhh---hcchhhhhh
Confidence 49999998432 123479999999 99999999887 576665555 688899999
Q ss_pred EEecCCCC
Q 026295 233 AWALNIGR 240 (240)
Q Consensus 233 ~~sp~~~~ 240 (240)
+|.|..|+
T Consensus 214 AwaP~~gl 221 (299)
T KOG1332|consen 214 AWAPSVGL 221 (299)
T ss_pred hhccccCC
Confidence 99998763
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-34 Score=216.75 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=170.2
Q ss_pred chhcccccceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 3 KAVATLDKGTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.+|.+|.+.|.++.|+|. +.-||||+.||++++|++. .-.++..+.+|...|..++|+|+ |++|++++.|.
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~ 283 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-----QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDS 283 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-----CCcchhhhhcchhhheeeeecCC--Cceeeeccccc
Confidence 468899999999999996 6799999999999999998 44788999999999999999999 99999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
+-++||+.++ ..+....+|...|.+++|.| +|..+++|+.|..-+|||+++ +.++..+.+|...|
T Consensus 284 tWRlWD~~tk-------~ElL~QEGHs~~v~~iaf~~--DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~I 348 (459)
T KOG0272|consen 284 TWRLWDLETK-------SELLLQEGHSKGVFSIAFQP--DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKEI 348 (459)
T ss_pred chhhcccccc-------hhhHhhcccccccceeEecC--CCceeeccCccchhheeeccc------CcEEEEecccccce
Confidence 9999999987 66777789999999999999 999999999999999999999 78888999999988
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. +|.|+|++- .||||+.| ++++|||++..... ..++ +|++-|+.|.|+|..|
T Consensus 349 ~----------~V~fsPNGy-----~lATgs~D-----nt~kVWDLR~r~~l----y~ip---AH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 349 L----------SVAFSPNGY-----HLATGSSD-----NTCKVWDLRMRSEL----YTIP---AHSNLVSQVKYSPQEG 400 (459)
T ss_pred e----------eEeECCCce-----EEeecCCC-----CcEEEeeecccccc----eecc---cccchhhheEecccCC
Confidence 8 999999997 89999999 99999999986543 2223 6999999999999766
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-33 Score=207.59 Aligned_cols=195 Identities=23% Similarity=0.384 Sum_probs=162.0
Q ss_pred chhcccccceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295 3 KAVATLDKGTTSSSWNY-----CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 77 (240)
+.|.+|...|++++|.| ..++||+++.||.|+|||+. .++++..+.+|+.+|+|++|-- ..++++++
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-----~~~~~~~lsgHT~~VTCvrwGG---~gliySgS 265 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-----LGTCVRTLSGHTASVTCVRWGG---EGLIYSGS 265 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-----CceEEEEeccCccceEEEEEcC---CceEEecC
Confidence 56889999999999987 56799999999999999998 6689999999999999999943 36899999
Q ss_pred cCCeEEEEEeeeccC-----------------------------CC----------------------------------
Q 026295 78 SDGSLLLWEEIVEDA-----------------------------QP---------------------------------- 94 (240)
Q Consensus 78 ~d~~v~iwd~~~~~~-----------------------------~~---------------------------------- 94 (240)
.|++|++|+...+.- .+
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999998443100 00
Q ss_pred ---cccE------EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 95 ---LQWK------LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 95 ---~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
--|+ ++..+.+|..-|..+.|+| +++++|+++.|..|++|+-++ ++.+..|.+|..+|.
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP--d~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~VY---- 413 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP--DGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAAVY---- 413 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECC--CccEEEEeecccceeeeeCCC------cchhhhhhhccceeE----
Confidence 0011 1223446888999999999 999999999999999999998 788888888888777
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
-++|+.+.. +|++|+.| .++++|++++.+ +...|+ ||.+.|+++.|+|||+|
T Consensus 414 ------qvawsaDsR-----LlVS~SkD-----sTLKvw~V~tkK----l~~DLp---Gh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 414 ------QVAWSADSR-----LLVSGSKD-----STLKVWDVRTKK----LKQDLP---GHADEVFAVDWSPDGQR 465 (480)
T ss_pred ------EEEeccCcc-----EEEEcCCC-----ceEEEEEeeeee----ecccCC---CCCceEEEEEecCCCce
Confidence 899999987 88899988 999999999854 344445 68889999999999986
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-31 Score=188.20 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=167.3
Q ss_pred hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+++|.+.|+.++..+. ...+.+++.|.++.+|++.......+.+.+.+.+|+..|..+..+++ |++.++++.|+++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccceE
Confidence 47889999999999987 47899999999999999976654466788999999999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc--ccee
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA--IDSV 160 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~v 160 (240)
++||+..+ +..+.|.+|...|.+++|+| +...+++|+.|.+|++|+... .+..++... ...|
T Consensus 88 rlWDl~~g-------~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g-------~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 88 RLWDLATG-------ESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLG-------VCKYTIHEDSHREWV 151 (315)
T ss_pred EEEEecCC-------cEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecc-------cEEEEEecCCCcCcE
Confidence 99999887 89999999999999999999 999999999999999999974 555555433 5666
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. ++.|+|+.. .++|+.++.| ++|++||+++-+.. ..+.+|++.|+.+++||||.
T Consensus 152 s----------cvrfsP~~~---~p~Ivs~s~D-----ktvKvWnl~~~~l~-------~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 152 S----------CVRFSPNES---NPIIVSASWD-----KTVKVWNLRNCQLR-------TTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred E----------EEEEcCCCC---CcEEEEccCC-----ceEEEEccCCcchh-------hccccccccEEEEEECCCCC
Confidence 6 999999964 4499999999 99999999875422 23447888999999999984
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=4.7e-30 Score=183.55 Aligned_cols=184 Identities=21% Similarity=0.373 Sum_probs=163.2
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.|...|++++|+|.|++||+|+.|.++.||.-... .++++.++.+|+..|.+++|+++ |.+||+++.|.+|.||.
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~---efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG---EFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWE 133 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCC---ceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEE
Confidence 58899999999999999999999999999987644 88999999999999999999999 99999999999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
+... .++.+...++.|...|..+.|+| ...+|++++.|++|++|.-.. ...|++.+++..|...+-
T Consensus 134 ~ded----dEfec~aVL~~HtqDVK~V~WHP--t~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW----- 199 (312)
T KOG0645|consen 134 IDED----DEFECIAVLQEHTQDVKHVIWHP--TEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVW----- 199 (312)
T ss_pred ecCC----CcEEEEeeeccccccccEEEEcC--CcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEE-----
Confidence 9855 56789999999999999999999 778899999999999998763 234999999999987777
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
+++|+|.+. .|++++.| ++|+||.+...- ..-|+.+++.++|.
T Consensus 200 -----~~~F~~~G~-----rl~s~sdD-----~tv~Iw~~~~~~-----------~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 200 -----SLAFDNIGS-----RLVSCSDD-----GTVSIWRLYTDL-----------SGMHSRALYDVPWD 242 (312)
T ss_pred -----EEEecCCCc-----eEEEecCC-----cceEeeeeccCc-----------chhcccceEeeeec
Confidence 999999997 79999998 999999976321 11266689999998
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-30 Score=198.58 Aligned_cols=192 Identities=23% Similarity=0.391 Sum_probs=159.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
..|++++|+.+|.+||+|+.||.++||+... .++.++..|.++|.+++|+.. |.+|++++.|+++.+||...
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G------~l~~tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG------NLISTLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc------hhhhhhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccC
Confidence 4799999999999999999999999999863 567888899999999999998 99999999999999999743
Q ss_pred ccC---------C--Cccc-----------------------EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295 90 EDA---------Q--PLQW-----------------------KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135 (240)
Q Consensus 90 ~~~---------~--~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 135 (240)
+.- . -..| .++.++.+|...|.++.|+| .+.+|++++.|++++|
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~--tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP--TGSLLASCSDDGTLKI 385 (524)
T ss_pred ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC--CCceEEEecCCCeeEe
Confidence 311 0 0011 23556778999999999999 9999999999999999
Q ss_pred EEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC----CCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 136 YELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE----NQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 136 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~----~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
|+... ......+..|...|. .+.|+|.+.. ..+..|++++.| ++|++||+..+.+
T Consensus 386 Ws~~~------~~~~~~l~~Hskei~----------t~~wsp~g~v~~n~~~~~~l~sas~d-----stV~lwdv~~gv~ 444 (524)
T KOG0273|consen 386 WSMGQ------SNSVHDLQAHSKEIY----------TIKWSPTGPVTSNPNMNLMLASASFD-----STVKLWDVESGVP 444 (524)
T ss_pred eecCC------Ccchhhhhhhcccee----------eEeecCCCCccCCCcCCceEEEeecC-----CeEEEEEccCCce
Confidence 99876 466667778877776 8889997654 456689999999 9999999998764
Q ss_pred CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 212 RWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 212 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
... +..|+.+|++|+|+||+-
T Consensus 445 i~~-------f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 445 IHT-------LMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred eEe-------eccCCCceEEEEecCCCc
Confidence 433 235888999999999974
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.4e-30 Score=192.88 Aligned_cols=185 Identities=15% Similarity=0.190 Sum_probs=166.7
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
-+++|.+.|.|+++.|...+|++|+.|++|+|||+. ++++..++.+|...|..+++++. ..|+++++.|+.|+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-----tg~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VK 218 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-----TGQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVK 218 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc-----cCeEEEeecchhheeeeeeeccc--CceEEEecCCCeeE
Confidence 478899999999999999999999999999999999 88999999999999999999998 89999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||+..+ +.++.+.+|-+.|.+++.+| .-..|++|+.|.++++||+++ ...+..+.+|..+|.
T Consensus 219 CwDLe~n-------kvIR~YhGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRt------r~~V~~l~GH~~~V~-- 281 (460)
T KOG0285|consen 219 CWDLEYN-------KVIRHYHGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRT------RASVHVLSGHTNPVA-- 281 (460)
T ss_pred EEechhh-------hhHHHhccccceeEEEeccc--cceeEEecCCcceEEEeeecc------cceEEEecCCCCcce--
Confidence 9999877 88999999999999999999 888999999999999999998 677788889988887
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.|.+.|... -+++|+.| ++|++||+..+.....+ . .|.-.|++++.+|.
T Consensus 282 --------~V~~~~~dp-----qvit~S~D-----~tvrlWDl~agkt~~tl----t---~hkksvral~lhP~ 330 (460)
T KOG0285|consen 282 --------SVMCQPTDP-----QVITGSHD-----STVRLWDLRAGKTMITL----T---HHKKSVRALCLHPK 330 (460)
T ss_pred --------eEEeecCCC-----ceEEecCC-----ceEEEeeeccCceeEee----e---cccceeeEEecCCc
Confidence 899998877 69999999 99999999987633222 2 36668999999985
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=182.28 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=161.7
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.+.+.+|++.+.|+.|-.|+ .|+|++.|.+.-+||++ +++.+..|.+|.+.|.++.++|. .++.|++|+-|+.
T Consensus 138 ~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-----~g~~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-----TGQQTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKS 210 (343)
T ss_pred eeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-----cceEEEEecCCcccEEEEecCCC-CCCeEEecccccc
Confidence 35688999999999998854 78899999999999999 78999999999999999999993 2999999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
.++||++.+ .+.++|.+|+..|.++.|.| +|.-+++|+.|+++++||++.+.+ +..+..
T Consensus 211 aklWD~R~~-------~c~qtF~ghesDINsv~ffP--~G~afatGSDD~tcRlyDlRaD~~------~a~ys~------ 269 (343)
T KOG0286|consen 211 AKLWDVRSG-------QCVQTFEGHESDINSVRFFP--SGDAFATGSDDATCRLYDLRADQE------LAVYSH------ 269 (343)
T ss_pred eeeeeccCc-------ceeEeecccccccceEEEcc--CCCeeeecCCCceeEEEeecCCcE------Eeeecc------
Confidence 999999987 99999999999999999999 999999999999999999998533 223321
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
....|.+++++|+..+. +|..|..| ..+.+||.-..+ .+..|. ||.+.|.+|.-+|||.
T Consensus 270 --~~~~~gitSv~FS~SGR-----lLfagy~d-----~~c~vWDtlk~e----~vg~L~---GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 270 --DSIICGITSVAFSKSGR-----LLFAGYDD-----FTCNVWDTLKGE----RVGVLA---GHENRVSCLGVSPDGM 328 (343)
T ss_pred --CcccCCceeEEEccccc-----EEEeeecC-----CceeEeeccccc----eEEEee---ccCCeeEEEEECCCCc
Confidence 11345566999999987 77777777 999999976543 223334 7888999999999984
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=199.67 Aligned_cols=184 Identities=16% Similarity=0.272 Sum_probs=159.4
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
-++.|+.+|+++.|+++|.++++|+.+|.|++|+..- ..+..++.|. ..|.+++|+|. ...|++++.|++|
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------nnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~i 204 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------NNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTI 204 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------hhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeE
Confidence 3688999999999999999999999999999999863 3345555554 89999999998 8889999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
+|||.... +....+.+|.-.|.+++|+| .-..+++++.|..|++||.++ +.++..+..|...|.
T Consensus 205 kiWdf~~~-------kee~vL~GHgwdVksvdWHP--~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl- 268 (464)
T KOG0284|consen 205 KIWDFRMP-------KEERVLRGHGWDVKSVDWHP--TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVL- 268 (464)
T ss_pred EEEeccCC-------chhheeccCCCCcceeccCC--ccceeEEccCCceeEeecCCC------cchhhhhhhccceEE-
Confidence 99999876 66777899999999999999 667799999999999999998 788888888877776
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.+.|+|+++ +|++++.| ..+++||+++-+.. ....+|...|++++|+|-
T Consensus 269 ---------~~~f~~n~N-----~Llt~skD-----~~~kv~DiR~mkEl-------~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 269 ---------AVKFNPNGN-----WLLTGSKD-----QSCKVFDIRTMKEL-------FTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred ---------EEEEcCCCC-----eeEEccCC-----ceEEEEehhHhHHH-------HHhhcchhhheeeccccc
Confidence 999999997 99999999 99999999853322 233368889999999994
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=199.16 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=164.0
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+.++|-..+++++++|||+++|||+.||.|+|||.. .+.|+.+|..|+..|+.++|+.. ++.+++++.||+|+
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-----SgfC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVR 417 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-----SGFCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVR 417 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEecc-----CceEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEE
Confidence 457899999999999999999999999999999998 77899999999999999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecccceee
Q 026295 84 LWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
.||+... +..++|..+ .....+++..| .|..+.+|+.|. .|.+|++++ ++++..+.+|.++|.
T Consensus 418 AwDlkRY-------rNfRTft~P~p~QfscvavD~--sGelV~AG~~d~F~IfvWS~qT------GqllDiLsGHEgPVs 482 (893)
T KOG0291|consen 418 AWDLKRY-------RNFRTFTSPEPIQFSCVAVDP--SGELVCAGAQDSFEIFVWSVQT------GQLLDILSGHEGPVS 482 (893)
T ss_pred eeeeccc-------ceeeeecCCCceeeeEEEEcC--CCCEEEeeccceEEEEEEEeec------CeeeehhcCCCCcce
Confidence 9999765 777777753 34557788888 899888888775 489999998 799999999999998
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++|+|.+. .|++|+.| .+||+|++-... ..+++++ +...|.+++|+|||-
T Consensus 483 ----------~l~f~~~~~-----~LaS~SWD-----kTVRiW~if~s~---~~vEtl~----i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 483 ----------GLSFSPDGS-----LLASGSWD-----KTVRIWDIFSSS---GTVETLE----IRSDVLAVSFRPDGK 533 (893)
T ss_pred ----------eeEEccccC-----eEEecccc-----ceEEEEEeeccC---ceeeeEe----eccceeEEEEcCCCC
Confidence 999999998 99999999 999999987643 3355554 556899999999984
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=9.6e-31 Score=196.44 Aligned_cols=190 Identities=19% Similarity=0.285 Sum_probs=163.0
Q ss_pred cchhcccc-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 2 DKAVATLD-KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 2 ~~~~~~h~-~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
++.++.|. ..|++++|+|....|++|+.||+|+|||... .+.-..+.+|.-.|.++.|.|. ..++++++.|.
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----~kee~vL~GHgwdVksvdWHP~--kgLiasgskDn 244 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----PKEERVLRGHGWDVKSVDWHPT--KGLIASGSKDN 244 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----CchhheeccCCCCcceeccCCc--cceeEEccCCc
Confidence 35566665 8999999999999999999999999999983 3445566899999999999998 88999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.|++||.+++ .++.++..|+..|..+.|+| ++++|++++.|..++++|+++ .+.+..+.+|...+
T Consensus 245 lVKlWDprSg-------~cl~tlh~HKntVl~~~f~~--n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 245 LVKLWDPRSG-------SCLATLHGHKNTVLAVKFNP--NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV 309 (464)
T ss_pred eeEeecCCCc-------chhhhhhhccceEEEEEEcC--CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence 9999999988 99999999999999999999 889999999999999999996 45566777888877
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
. ++.|+|-... +|.+|+.| |.|..|.+...... . .....|...|++++|+|=|
T Consensus 310 ~----------~~~WhP~~~~----lftsgg~D-----gsvvh~~v~~~~p~----~--~i~~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 310 T----------SLTWHPLNES----LFTSGGSD-----GSVVHWVVGLEEPL----G--EIPPAHDGEIWSLAYHPLG 362 (464)
T ss_pred e----------eecccccccc----ceeeccCC-----CceEEEeccccccc----c--CCCcccccceeeeeccccc
Confidence 7 9999998854 89999999 99999998743211 1 1223588899999999965
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=177.56 Aligned_cols=193 Identities=17% Similarity=0.258 Sum_probs=164.5
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.|++|.+.|.++.|++|.++|++++.||.+-|||.. +....+.+.-...-|...+|+|. |+++++|+.|...
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~-----TtnK~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~C 121 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF-----TTNKVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNKC 121 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc-----cccceeEEecCceeEEEEEECCC--CCeEEecCcCcee
Confidence 4588999999999999999999999999999999998 44555666656778999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
.||++...+.+ ......+.+.+|+..+.++.|-+ +++ |++++.|.++.+||+++ ++.+..|.+|...|-
T Consensus 122 siy~ls~~d~~-g~~~v~r~l~gHtgylScC~f~d--D~~-ilT~SGD~TCalWDie~------g~~~~~f~GH~gDV~- 190 (343)
T KOG0286|consen 122 SIYPLSTRDAE-GNVRVSRELAGHTGYLSCCRFLD--DNH-ILTGSGDMTCALWDIET------GQQTQVFHGHTGDVM- 190 (343)
T ss_pred EEEeccccccc-ccceeeeeecCccceeEEEEEcC--CCc-eEecCCCceEEEEEccc------ceEEEEecCCcccEE-
Confidence 99999865332 12245677889999999999976 665 99999999999999998 788889999988887
Q ss_pred cccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 163 FRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
++++.| +.+ .|++|+.| +..+|||++.+... .. +.+|++.|++|.|.|+|-
T Consensus 191 ---------slsl~p~~~n-----tFvSg~cD-----~~aklWD~R~~~c~----qt---F~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 191 ---------SLSLSPSDGN-----TFVSGGCD-----KSAKLWDVRSGQCV----QT---FEGHESDINSVRFFPSGD 242 (343)
T ss_pred ---------EEecCCCCCC-----eEEecccc-----cceeeeeccCccee----Ee---ecccccccceEEEccCCC
Confidence 999999 544 89999999 99999999987543 23 337888999999999983
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1e-28 Score=200.39 Aligned_cols=189 Identities=19% Similarity=0.301 Sum_probs=161.7
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
...|.++.|+++|+.|++++.|+.+++|+.... .......+.+|...|.+++|+|+ +.++++++.|++++|||+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~---~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI---KSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccc---cchhhccccccccceeeeEECCC--CcEEEEecCCceEEEeecc
Confidence 568999999999999999999999999999522 10256666889999999999999 9999999999999999993
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (240)
... ..++++++|...|++++|+| .++.+++|+.|++|+|||+++ +++...+..|...+.
T Consensus 234 ~~~------~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~------~~~~~~l~~hs~~is------- 292 (456)
T KOG0266|consen 234 DDG------RNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRT------GECVRKLKGHSDGIS------- 292 (456)
T ss_pred CCC------eEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccC------CeEEEeeeccCCceE-------
Confidence 221 78999999999999999999 889999999999999999998 788999999998888
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++|++++. +|++++.| +.|+|||+.++... ...++...+... +++.++|+|++.
T Consensus 293 ---~~~f~~d~~-----~l~s~s~d-----~~i~vwd~~~~~~~--~~~~~~~~~~~~-~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 293 ---GLAFSPDGN-----LLVSASYD-----GTIRVWDLETGSKL--CLKLLSGAENSA-PVTSVQFSPNGK 347 (456)
T ss_pred ---EEEECCCCC-----EEEEcCCC-----ccEEEEECCCCcee--eeecccCCCCCC-ceeEEEECCCCc
Confidence 999999998 89999888 99999999987633 233334333333 699999999973
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=172.77 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=160.4
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
++..|...|+++.|..+|+.+++|++||+++|||++ ...+-+.++ |..+|+++...|+ ...|+++..+|.|+
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-----~~~~qR~~~-~~spVn~vvlhpn--QteLis~dqsg~ir 149 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-----SLSCQRNYQ-HNSPVNTVVLHPN--QTELISGDQSGNIR 149 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEecc-----Ccccchhcc-CCCCcceEEecCC--cceEEeecCCCcEE
Confidence 467888999999999999999999999999999998 434444444 6799999999998 67789999999999
Q ss_pred EEEeeeccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 84 LWEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
+||+... .+... +......|.++...| +|.+++.+...|.+.+|++.........+++.+++.|...+.
T Consensus 150 vWDl~~~-------~c~~~liPe~~~~i~sl~v~~--dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il- 219 (311)
T KOG0315|consen 150 VWDLGEN-------SCTHELIPEDDTSIQSLTVMP--DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL- 219 (311)
T ss_pred EEEccCC-------ccccccCCCCCcceeeEEEcC--CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE-
Confidence 9999764 33333 345567899999999 999999999999999999987666666778888888877766
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
...++|+.. +||++++| .+++||+.++. +.+...++ +|..+|++.+||-|+.
T Consensus 220 ---------~C~lSPd~k-----~lat~ssd-----ktv~iwn~~~~---~kle~~l~---gh~rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 220 ---------RCLLSPDVK-----YLATCSSD-----KTVKIWNTDDF---FKLELVLT---GHQRWVWDCAFSADGE 271 (311)
T ss_pred ---------EEEECCCCc-----EEEeecCC-----ceEEEEecCCc---eeeEEEee---cCCceEEeeeeccCcc
Confidence 778999998 99999999 99999998874 23334444 5777999999999873
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.6e-29 Score=175.75 Aligned_cols=185 Identities=18% Similarity=0.327 Sum_probs=153.4
Q ss_pred ccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
.+.+..++|+++. +.+++++.||+++|||...+ -.++..++.|+.+|.++.|++. .+..+++++.|++|++|+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~ 134 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDP 134 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecC
Confidence 4578999999964 78999999999999997653 3589999999999999999886 3567888899999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
..+ +.++++.+|...|...+|+|+ .++.+++++.|+++++||++.+ ++... +..|...+.
T Consensus 135 ~r~-------~Sv~Tf~gh~~~Iy~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil------ 194 (311)
T KOG0277|consen 135 NRP-------NSVQTFNGHNSCIYQAAFSPH-IPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEIL------ 194 (311)
T ss_pred CCC-------cceEeecCCccEEEEEecCCC-CCCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeE------
Confidence 776 789999999999999999997 5667999999999999999975 33332 566665554
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
++.|+.... .+|+||+.| +.||+||+++-. +++.++. +|+-+|+.|.|||-
T Consensus 195 ----~cdw~ky~~----~vl~Tg~vd-----~~vr~wDir~~r---~pl~eL~---gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 195 ----CCDWSKYNH----NVLATGGVD-----NLVRGWDIRNLR---TPLFELN---GHGLAVRKVKFSPH 245 (311)
T ss_pred ----eecccccCC----cEEEecCCC-----ceEEEEehhhcc---ccceeec---CCceEEEEEecCcc
Confidence 778988764 399999999 999999998744 3344443 78889999999995
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-29 Score=187.66 Aligned_cols=194 Identities=21% Similarity=0.311 Sum_probs=170.8
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+..|++|.+.|..++|+..|++||+++.|-.+++||... ..+++..+.+|+..|.+++|-|. |+++++++.|.+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~----~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~t 216 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT----FFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNT 216 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHH----HHHHHHHhcCcccceeeEEEEec--CCeeeecccccc
Confidence 356899999999999999999999999999999999983 35677888899999999999999 999999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
|+.|++.++ .++.++.+|...|..+..+. +|.++++++.|.+|++|-+.+ .++...+..|..++.
T Consensus 217 ik~We~~tg-------~cv~t~~~h~ewvr~v~v~~--DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 217 IKAWECDTG-------YCVKTFPGHSEWVRMVRVNQ--DGTIIASCSNDQTLRVWVVAT------KQCKAELREHEHPVE 281 (406)
T ss_pred eeEEecccc-------eeEEeccCchHhEEEEEecC--CeeEEEecCCCceEEEEEecc------chhhhhhhccccceE
Confidence 999999988 99999999999999998866 999999999999999999987 677778888888777
Q ss_pred ccccccceeeeEEEeCCCCC----------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295 162 MFRKASCISASISWNPQKGE----------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA 231 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~----------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~ 231 (240)
+++|.|.... +.++++.+++.| ++|++||+.++.+.+++ . +|.++|+.
T Consensus 282 ----------ci~wap~~~~~~i~~at~~~~~~~~l~s~SrD-----ktIk~wdv~tg~cL~tL----~---ghdnwVr~ 339 (406)
T KOG0295|consen 282 ----------CIAWAPESSYPSISEATGSTNGGQVLGSGSRD-----KTIKIWDVSTGMCLFTL----V---GHDNWVRG 339 (406)
T ss_pred ----------EEEecccccCcchhhccCCCCCccEEEeeccc-----ceEEEEeccCCeEEEEE----e---cccceeee
Confidence 8888885433 345699999999 99999999998654433 3 68889999
Q ss_pred EEEecCC
Q 026295 232 VAWALNI 238 (240)
Q Consensus 232 v~~sp~~ 238 (240)
++|+|-|
T Consensus 340 ~af~p~G 346 (406)
T KOG0295|consen 340 VAFSPGG 346 (406)
T ss_pred eEEcCCC
Confidence 9999976
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-29 Score=196.54 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=166.7
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+..|.+-|+|++.+|...+++++|.|-+|++||.++ .|.+.+++.+|+..|.+++|+|. +.+.|++++.|++|
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----EWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTV 165 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----ceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccE
Confidence 55788999999999999999999999999999999986 78999999999999999999997 46889999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++|.+... .+..++++|...|.++.+-+..+-.+|++|+.|.+|+|||.++ ..|++++.+|...+.
T Consensus 166 KVWslgs~-------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------k~CV~TLeGHt~Nvs- 231 (794)
T KOG0276|consen 166 KVWSLGSP-------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------KSCVQTLEGHTNNVS- 231 (794)
T ss_pred EEEEcCCC-------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------HHHHHHhhcccccce-
Confidence 99999766 7889999999999999999855556999999999999999998 789999999988887
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.++|+|.-+ ++++|+.| |+||||+..+-..+..+ .-..+ .|++|+-.+..+
T Consensus 232 ---------~v~fhp~lp-----iiisgsED-----GTvriWhs~Ty~lE~tL----n~gle---RvW~I~~~k~~~ 282 (794)
T KOG0276|consen 232 ---------FVFFHPELP-----IIISGSED-----GTVRIWNSKTYKLEKTL----NYGLE---RVWCIAAHKGDG 282 (794)
T ss_pred ---------EEEecCCCc-----EEEEecCC-----ccEEEecCcceehhhhh----hcCCc---eEEEEeecCCCC
Confidence 999999988 99999999 99999998764433222 21112 688887766554
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.4e-29 Score=202.34 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=151.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
.++|..+|..+.|+|.|-+||||+.|++.++|... ...+++.+.+|-+.|.|+.|.|+ ..|+++|+.|.+|++
T Consensus 489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-----~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRl 561 (707)
T KOG0263|consen 489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-----HNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRL 561 (707)
T ss_pred ecCCCcceeeEEecCCceEEEecCCCceeeeeecc-----cCCchhhhcccccccceEEECCc--ccccccCCCCceEEE
Confidence 45799999999999999999999999999999998 45788999999999999999999 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
||+.++ ..++.|.+|..+|.+++|+| .|.+|++|+.||.|++||+.. +.++..+..|...+.
T Consensus 562 WDv~~G-------~~VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~Ht~ti~--- 623 (707)
T KOG0263|consen 562 WDVSTG-------NSVRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGHTGTIY--- 623 (707)
T ss_pred EEcCCC-------cEEEEecCCCCceEEEEEcC--CCceEeecccCCcEEEEEcCC------CcchhhhhcccCcee---
Confidence 999888 88999999999999999999 999999999999999999987 677777888876666
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+++|+.++. +||+|+.| +.|++||+...
T Consensus 624 -------SlsFS~dg~-----vLasgg~D-----nsV~lWD~~~~ 651 (707)
T KOG0263|consen 624 -------SLSFSRDGN-----VLASGGAD-----NSVRLWDLTKV 651 (707)
T ss_pred -------EEEEecCCC-----EEEecCCC-----CeEEEEEchhh
Confidence 999999998 99999999 99999998653
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=171.30 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=157.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
|..++++|..++|+-+|++.++|+.|.+|++|+.. .+.++.++.+|..+|.+++.+.+ ...|++++.|..|.+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-----rg~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-----RGALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQV 85 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeeccc-----ccceeeeecCCCceeeecccccc--ccccccCCCCceEEE
Confidence 56789999999999999999999999999999998 67899999999999999999988 888999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
||+.++ +..+.+.+|...|+.+.|+. +...+++|+.|.++++||.++ ...++++.+......+.
T Consensus 86 wDV~TG-------kv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS----~s~ePiQildea~D~V~--- 149 (307)
T KOG0316|consen 86 WDVNTG-------KVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRS----RSFEPIQILDEAKDGVS--- 149 (307)
T ss_pred EEcccC-------eeeeecccccceeeEEEecC--cceEEEeccccceeEEEEccc----CCCCccchhhhhcCcee---
Confidence 999988 99999999999999999966 888999999999999999997 34667777665555444
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
++..... .+++|+.| |++|.||++.+...-- ..+.+|++++|+||+.
T Consensus 150 -------Si~v~~h-------eIvaGS~D-----GtvRtydiR~G~l~sD---------y~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 150 -------SIDVAEH-------EIVAGSVD-----GTVRTYDIRKGTLSSD---------YFGHPITSVSFSKDGN 196 (307)
T ss_pred -------EEEeccc-------EEEeeccC-----CcEEEEEeecceeehh---------hcCCcceeEEecCCCC
Confidence 5544322 58888888 9999999998753211 1344999999999974
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.7e-28 Score=194.74 Aligned_cols=168 Identities=21% Similarity=0.345 Sum_probs=147.9
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|...|.+++|+|+++++++++.|++|+|||+.. ....+.++++|...|++++|+|. ++++++|+.|++|+
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----DGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVR 271 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccC----CCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEE
Confidence 4567999999999999999999999999999999942 45788999999999999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee--EEeeeecccce--
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ--LQAEFQNAIDS-- 159 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~~~-- 159 (240)
+||++++ ++...+..|...|.+++|++ ++.+|++++.|+.|++||+.+ +. +...+..+...
T Consensus 272 iWd~~~~-------~~~~~l~~hs~~is~~~f~~--d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 272 IWDVRTG-------ECVRKLKGHSDGISGLAFSP--DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP 336 (456)
T ss_pred EEeccCC-------eEEEeeeccCCceEEEEECC--CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence 9999886 99999999999999999999 999999999999999999987 34 34444443322
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
+. .++|+|++. +|++++.| +.+++|++......
T Consensus 337 ~~----------~~~fsp~~~-----~ll~~~~d-----~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 337 VT----------SVQFSPNGK-----YLLSASLD-----RTLKLWDLRSGKSV 369 (456)
T ss_pred ee----------EEEECCCCc-----EEEEecCC-----CeEEEEEccCCcce
Confidence 34 899999998 89999998 99999999876533
No 27
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.8e-27 Score=191.20 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=149.0
Q ss_pred hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+.+|.+.|++++|+| ++++|++|+.|++|+|||+..... ....++..+.+|...|.+++|+|. .+.+|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCCE
Confidence 678999999999999 889999999999999999974310 012356778899999999999997 1368999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
|+|||+..+ ..+..+..|...|.+++|+| ++.+|++++.|++|++||+++ .+.+..+..|.....
T Consensus 150 VrIWDl~tg-------~~~~~l~~h~~~V~sla~sp--dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~~ 214 (493)
T PTZ00421 150 VNVWDVERG-------KAVEVIKCHSDQITSLEWNL--DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAKS 214 (493)
T ss_pred EEEEECCCC-------eEEEEEcCCCCceEEEEEEC--CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCcc
Confidence 999999876 77888888999999999999 999999999999999999987 455556666643221
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEe----cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGF----NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~----~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+.|.++.. .+++++ .| +.|++||++........ ... .+...+....|+||
T Consensus 215 ---------~~~~w~~~~~-----~ivt~G~s~s~D-----r~VklWDlr~~~~p~~~---~~~--d~~~~~~~~~~d~d 270 (493)
T PTZ00421 215 ---------QRCLWAKRKD-----LIITLGCSKSQQ-----RQIMLWDTRKMASPYST---VDL--DQSSALFIPFFDED 270 (493)
T ss_pred ---------eEEEEcCCCC-----eEEEEecCCCCC-----CeEEEEeCCCCCCceeE---ecc--CCCCceEEEEEcCC
Confidence 1567888765 455543 34 89999999865433211 111 12335666677877
Q ss_pred CC
Q 026295 238 IG 239 (240)
Q Consensus 238 ~~ 239 (240)
+.
T Consensus 271 ~~ 272 (493)
T PTZ00421 271 TN 272 (493)
T ss_pred CC
Confidence 63
No 28
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=197.37 Aligned_cols=194 Identities=16% Similarity=0.261 Sum_probs=151.4
Q ss_pred cchhc-ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------------------CC---------
Q 026295 2 DKAVA-TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----------------------------SS--------- 43 (240)
Q Consensus 2 ~~~~~-~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----------------------------~~--------- 43 (240)
.++++ .|.++|.++.||+||+|||+|+.|+.|+||.+... ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45677 89999999999999999999999999999987650 00
Q ss_pred ------C------------cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee
Q 026295 44 ------S------------SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES 105 (240)
Q Consensus 44 ------~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 105 (240)
. .-+++..+++|.+.|.+|.|+.+ ++|++++.|.+|+||++... .++..|.
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~-------~CL~~F~- 407 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK-------ECLKVFS- 407 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCc-------ceeeEEe-
Confidence 0 11344567899999999999774 78999999999999999876 8888886
Q ss_pred ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCc
Q 026295 106 TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGS 185 (240)
Q Consensus 106 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~ 185 (240)
|...|+||+|+|. |.+||++|+.||.|+||++.. .+.. .......-|+ +++|.|+|.
T Consensus 408 HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d------~~Vv-~W~Dl~~lIT----------Avcy~PdGk----- 464 (712)
T KOG0283|consen 408 HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISD------KKVV-DWNDLRDLIT----------AVCYSPDGK----- 464 (712)
T ss_pred cCCeeEEEEeccc-CCCcEeecccccceEEeecCc------CeeE-eehhhhhhhe----------eEEeccCCc-----
Confidence 7799999999997 678899999999999999986 3333 2223334455 999999988
Q ss_pred eEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC----CCCCCceEEEEEecC
Q 026295 186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP----EDRSDEVYAVAWALN 237 (240)
Q Consensus 186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~----~~h~~~v~~v~~sp~ 237 (240)
+.++|+.+ |.+++|+....+-. ....+..+ ..|. .|+.++|.|.
T Consensus 465 ~avIGt~~-----G~C~fY~t~~lk~~--~~~~I~~~~~Kk~~~~-rITG~Q~~p~ 512 (712)
T KOG0283|consen 465 GAVIGTFN-----GYCRFYDTEGLKLV--SDFHIRLHNKKKKQGK-RITGLQFFPG 512 (712)
T ss_pred eEEEEEec-----cEEEEEEccCCeEE--EeeeEeeccCccccCc-eeeeeEecCC
Confidence 89999999 99999997654322 11111111 0133 7999999984
No 29
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-28 Score=172.92 Aligned_cols=206 Identities=23% Similarity=0.409 Sum_probs=171.3
Q ss_pred chhcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 3 KAVATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.+|.+|.++|..++|.. .|.+||+++.||.|.||.-.+. .+........|...|++++|.|..+|-.|++++.||
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g---~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG---RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC---chhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 35789999999999976 8999999999999999998754 677778888999999999999998899999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CC-----------cEEEEEeCCCcEEEEEecCccccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TS-----------LKLVAAYSDGHVKVYELLDPLILKNWQ 148 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-----------~~l~~~~~dg~v~iw~~~~~~~~~~~~ 148 (240)
.|.+.+++.. ..|........|+-.|++++|.|.. .| ..|++|+.|..|+||+.... .|.
T Consensus 127 ~vsvl~~~~~----g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~ 198 (299)
T KOG1332|consen 127 KVSVLTYDSS----GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWK 198 (299)
T ss_pred cEEEEEEcCC----CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chh
Confidence 9999999764 2345556667899999999999841 13 56999999999999998863 578
Q ss_pred EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295 149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDE 228 (240)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~ 228 (240)
+...|..|...++ .++|+|.... ...+||+++.| |+|.||..+.....|+... ++. ..+.
T Consensus 199 ~e~~l~~H~dwVR----------DVAwaP~~gl-~~s~iAS~SqD-----g~viIwt~~~e~e~wk~tl-l~~---f~~~ 258 (299)
T KOG1332|consen 199 LERTLEGHKDWVR----------DVAWAPSVGL-PKSTIASCSQD-----GTVIIWTKDEEYEPWKKTL-LEE---FPDV 258 (299)
T ss_pred hhhhhhhcchhhh----------hhhhccccCC-CceeeEEecCC-----CcEEEEEecCccCcccccc-ccc---CCcc
Confidence 8888999999999 9999998753 24489999999 9999999986656665432 222 4448
Q ss_pred eEEEEEecCCC
Q 026295 229 VYAVAWALNIG 239 (240)
Q Consensus 229 v~~v~~sp~~~ 239 (240)
++.++||+.+.
T Consensus 259 ~w~vSWS~sGn 269 (299)
T KOG1332|consen 259 VWRVSWSLSGN 269 (299)
T ss_pred eEEEEEecccc
Confidence 99999999874
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=182.56 Aligned_cols=192 Identities=17% Similarity=0.318 Sum_probs=162.0
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC------------------------------------CcEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS------------------------------------SSFT 47 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~------------------------------------~~~~ 47 (240)
.+..|.++|.++.|+..|.+|++++.|+++.|||...... +.-.
T Consensus 271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC
Confidence 4677999999999999999999999999999999742210 0113
Q ss_pred EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec-------CC
Q 026295 48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS-------ST 120 (240)
Q Consensus 48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~ 120 (240)
++.++.+|.++|.+|.|+|. +.+|++++.|++++||..... .....+..|...|..+.|+|. ..
T Consensus 351 P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~-------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS-------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred cceeeecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-------cchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 44667789999999999999 999999999999999998665 677888899999999999983 12
Q ss_pred CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCe
Q 026295 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNS 200 (240)
Q Consensus 121 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~ 200 (240)
+..+++++.|++|++||... +.++..|..|..+|. +|+|+|++. ++|+|+.| |.
T Consensus 422 ~~~l~sas~dstV~lwdv~~------gv~i~~f~kH~~pVy----------svafS~~g~-----ylAsGs~d-----g~ 475 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVES------GVPIHTLMKHQEPVY----------SVAFSPNGR-----YLASGSLD-----GC 475 (524)
T ss_pred CceEEEeecCCeEEEEEccC------CceeEeeccCCCceE----------EEEecCCCc-----EEEecCCC-----Ce
Confidence 35799999999999999998 788899999998888 999999998 99999999 99
Q ss_pred EEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 201 SKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 201 i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
|.||+.++++ ++.... -.+.|..|+|+-++
T Consensus 476 V~iws~~~~~----l~~s~~----~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 476 VHIWSTKTGK----LVKSYQ----GTGGIFELCWNAAG 505 (524)
T ss_pred eEeccccchh----eeEeec----CCCeEEEEEEcCCC
Confidence 9999998765 333332 33469999999876
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=172.41 Aligned_cols=186 Identities=14% Similarity=0.241 Sum_probs=155.0
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+.+|++.|..+.|+|+|..||+|+.|..|.+|+.... .+....+++|.++|..+.|.++ +..+++++.|.+|+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd----ceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD----CENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKTVRG 116 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc----ccceeeeccccceeEeeeeccC--CCEEEEecCCceEEE
Confidence 5679999999999999999999999999999998753 3456677799999999999999 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
||.+++ +..+.++.|..-|..+. |.+-|. .+.+++.|+++++||+++ .+.++.+... ..+.
T Consensus 117 wD~~tG-------~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~------k~~~~t~~~k-yqlt-- 178 (338)
T KOG0265|consen 117 WDAETG-------KRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRK------KEAIKTFENK-YQLT-- 178 (338)
T ss_pred Eecccc-------eeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecc------cchhhccccc-eeEE--
Confidence 999988 99999999999999887 443444 577888999999999997 3444443221 1223
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
++.|...+. -+.+|+-| +.|++||++.....+.+ . ||.++|+.+..+|++.
T Consensus 179 --------Av~f~d~s~-----qv~sggId-----n~ikvWd~r~~d~~~~l----s---Gh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 179 --------AVGFKDTSD-----QVISGGID-----NDIKVWDLRKNDGLYTL----S---GHADTITGLSLSRYGS 229 (338)
T ss_pred --------EEEeccccc-----ceeecccc-----CceeeeccccCcceEEe----e---cccCceeeEEeccCCC
Confidence 899998887 58899998 99999999887654333 3 7888999999999985
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-28 Score=190.49 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=169.9
Q ss_pred CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
|++.+.-.+-+|++..|-+-.+.+++|+.|..||||+.. +++.+..|..|...|.+++.+|. -.++++++.|-
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-----t~ekV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm 119 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-----TGEKVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDM 119 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-----cceeeEEeeccccceeeeeecCC--CCeEEecCCcc
Confidence 556666777799999999999999999999999999999 88999999999999999999999 89999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
+|++||-+. .|.+.++|.+|+.-|.+++|.|. +.+.+++++.|++|++|.+.+ ..+..++.+|...|
T Consensus 120 ~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 120 TIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGV 186 (794)
T ss_pred EEEEeeccC------ceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCC------CCCceeeeccccCc
Confidence 999999975 48999999999999999999996 455699999999999999987 35666777887666
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
. +|.|-+.+. .++|++|+.| .+|+|||+++..+..++ + ||...|..+.|+|..
T Consensus 187 N----------~Vdyy~~gd---kpylIsgaDD-----~tiKvWDyQtk~CV~TL----e---GHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 187 N----------CVDYYTGGD---KPYLISGADD-----LTIKVWDYQTKSCVQTL----E---GHTNNVSFVFFHPEL 239 (794)
T ss_pred c----------eEEeccCCC---cceEEecCCC-----ceEEEeecchHHHHHHh----h---cccccceEEEecCCC
Confidence 5 999988876 6699999998 99999999997655333 3 788899999999964
No 33
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.9e-27 Score=197.32 Aligned_cols=207 Identities=17% Similarity=0.297 Sum_probs=156.2
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------CCCcEEEEeEeeecCccEEEEEEcCCCCC
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-------------SSSSFTCNLKTKVHAGAILKVVWVPPEFG 70 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 70 (240)
.+..|.+.|.|++|+|||++||+|+.|+.|.||+.... ....|+....+.+|.+.|.+++|+|+ +
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~ 141 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--D 141 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--c
Confidence 35679999999999999999999999999999998730 12367889999999999999999999 9
Q ss_pred CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295 71 DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ 150 (240)
Q Consensus 71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 150 (240)
.+|++++.|++|.||+..+- ..+..+++|...|-.+.|+| -|+|||+-+.|++|+||++.+ |.+.
T Consensus 142 ~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~d------w~i~ 206 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSD------WGIE 206 (942)
T ss_pred cEEEEecccceEEEEccccc-------eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEccc------ceee
Confidence 99999999999999999765 89999999999999999999 999999999999999999755 4444
Q ss_pred eeeeccccee-----------ecccc-------------------------------ccceeeeEEEeCCCCC-------
Q 026295 151 AEFQNAIDSV-----------TMFRK-------------------------------ASCISASISWNPQKGE------- 181 (240)
Q Consensus 151 ~~~~~~~~~v-----------~~~~~-------------------------------~~~~~~~v~~~p~~~~------- 181 (240)
+.+..+.... +|.|. |...+.++.|+|.--+
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 4443322211 01111 1112235555553211
Q ss_pred -CCC----ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 182 -NQG----SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 182 -~~~----~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.+. ..+|+|+.| ++|.||........... .. =....|.+++|+|||
T Consensus 287 ~~~~~~~y~i~AvgSqD-----rSlSVW~T~~~RPl~vi-~~-----lf~~SI~DmsWspdG 337 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQD-----RSLSVWNTALPRPLFVI-HN-----LFNKSIVDMSWSPDG 337 (942)
T ss_pred ccCCCcceEEEEEecCC-----ccEEEEecCCCCchhhh-hh-----hhcCceeeeeEcCCC
Confidence 112 278889998 99999997443322222 11 133489999999998
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=174.94 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=168.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+..|+..|.+++|-|.|.++++++.|.+|+.|++. ++.++.++.+|..-|..+..+.+ |.++++++.|.+|
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-----tg~cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl 259 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-----TGYCVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTL 259 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecc-----cceeEEeccCchHhEEEEEecCC--eeEEEecCCCceE
Confidence 3466788999999999999999999999999999999 88999999999999999999888 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec--------C-----CCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS--------S-----TSLKLVAAYSDGHVKVYELLDPLILKNWQL 149 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 149 (240)
++|-+.++ ++...++.|+..|.+++|.|. + .++++.+++.|++|++||+.+ +.+
T Consensus 260 ~vW~~~t~-------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t------g~c 326 (406)
T KOG0295|consen 260 RVWVVATK-------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST------GMC 326 (406)
T ss_pred EEEEeccc-------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC------CeE
Confidence 99999887 788889999999999999872 1 135899999999999999998 799
Q ss_pred EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295 150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV 229 (240)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 229 (240)
+.++.+|..+|+ .++|+|.|. ||+++..| +++++||+.+..+...+ + .|+.-|
T Consensus 327 L~tL~ghdnwVr----------~~af~p~Gk-----yi~ScaDD-----ktlrvwdl~~~~cmk~~----~---ah~hfv 379 (406)
T KOG0295|consen 327 LFTLVGHDNWVR----------GVAFSPGGK-----YILSCADD-----KTLRVWDLKNLQCMKTL----E---AHEHFV 379 (406)
T ss_pred EEEEecccceee----------eeEEcCCCe-----EEEEEecC-----CcEEEEEeccceeeecc----C---CCccee
Confidence 999999999999 999999998 89999988 99999999987655433 3 366699
Q ss_pred EEEEEecCC
Q 026295 230 YAVAWALNI 238 (240)
Q Consensus 230 ~~v~~sp~~ 238 (240)
++++|+.+-
T Consensus 380 t~lDfh~~~ 388 (406)
T KOG0295|consen 380 TSLDFHKTA 388 (406)
T ss_pred EEEecCCCC
Confidence 999998753
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.1e-28 Score=172.36 Aligned_cols=190 Identities=17% Similarity=0.278 Sum_probs=158.3
Q ss_pred hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
++++|...|.++.|++ .++.+++++.|++|++|+.. ....+.++.+|...|+..+|+|. .+++|++++.|+.+
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-----r~~Sv~Tf~gh~~~Iy~a~~sp~-~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-----RPNSVQTFNGHNSCIYQAAFSPH-IPNLFASASGDGTL 172 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCC-----CCcceEeecCCccEEEEEecCCC-CCCeEEEccCCceE
Confidence 4788999999999999 45678888999999999998 44678899999999999999997 57899999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||++... + ...+..|...+.++.|+. .+...|++|+.|+.|++||++.- ..++.++.+|.-.|+
T Consensus 173 ~lwdvr~~g------k-~~~i~ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~-----r~pl~eL~gh~~AVR- 238 (311)
T KOG0277|consen 173 RLWDVRSPG------K-FMSIEAHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNL-----RTPLFELNGHGLAVR- 238 (311)
T ss_pred EEEEecCCC------c-eeEEEeccceeEeecccc-cCCcEEEecCCCceEEEEehhhc-----cccceeecCCceEEE-
Confidence 999998652 3 333888888999999985 36678999999999999999963 356778888888888
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.|.|+|.... +||+++.| -++||||........ + ....|++-|..+.||+-
T Consensus 239 ---------kvk~Sph~~~----lLaSasYD-----mT~riw~~~~~ds~~---e---~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 239 ---------KVKFSPHHAS----LLASASYD-----MTVRIWDPERQDSAI---E---TVDHHTEFVCGLDWSLF 289 (311)
T ss_pred ---------EEecCcchhh----Hhhhcccc-----ceEEecccccchhhh---h---hhhccceEEeccccccc
Confidence 9999998854 99999999 999999987543221 1 12258889999999874
No 36
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.7e-27 Score=181.06 Aligned_cols=204 Identities=21% Similarity=0.331 Sum_probs=164.8
Q ss_pred hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
+|.+|.+.-..++|++.. -+|++|+.|+.|++||+...... ...+...+.+|+..|.+++|++. ...+|++++.|+
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDG 250 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCC
Confidence 477888877889999954 58999999999999999764321 24456778899999999999886 357899999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.+.|||.+.... ++......|...|.+++|+|. ++..||+|+.|++|.+||+|.. .+....+..|...|
T Consensus 251 ~L~iwD~R~~~~-----~~~~~~~ah~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL-----~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 251 KLMIWDTRSNTS-----KPSHSVKAHSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNL-----NKPLHTFEGHEDEV 319 (422)
T ss_pred eEEEEEcCCCCC-----CCcccccccCCceeEEEeCCC-CCceEEeccCCCcEEEeechhc-----ccCceeccCCCcce
Confidence 999999985321 667777889999999999996 5677999999999999999974 34566777777766
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-------ceeEeeecCCCCCCceEEEE
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-------LPVAELALPEDRSDEVYAVA 233 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~ 233 (240)
. .|.|+|.... +||+++.| +.+.|||+..-..+. .+.+.+-.|.||...|.+++
T Consensus 320 ~----------~V~WSPh~et----vLASSg~D-----~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 320 F----------QVEWSPHNET----VLASSGTD-----RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred E----------EEEeCCCCCc----eeEecccC-----CcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence 6 9999999854 89999998 999999996533221 23344557889999999999
Q ss_pred EecCC
Q 026295 234 WALNI 238 (240)
Q Consensus 234 ~sp~~ 238 (240)
|+|+-
T Consensus 381 Wnp~e 385 (422)
T KOG0264|consen 381 WNPNE 385 (422)
T ss_pred CCCCC
Confidence 99974
No 37
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=175.34 Aligned_cols=210 Identities=18% Similarity=0.191 Sum_probs=159.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+..|.+.|.-+.||++|++||+++.|.+.-||.+.... ..++..++.+|..+|..+.|+|+ .+++++++.|..+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~ 293 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVL 293 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeecccCceEEEEECCC--CCeEEecCchHhe
Confidence 4578899999999999999999999999999999987554 46778899999999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
.+||..++ .+...+.. +...+.+++|.| +|..+++|+.|+++..||+... ....|+-+..-..+...++
T Consensus 294 ~lwDv~tg-------d~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 294 SLWDVDTG-------DLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eeccCCcc-------hhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEc
Confidence 99999887 55555543 457889999999 9999999999999999998742 2333443332222222222
Q ss_pred ccccccc--------------------------eeeeEEEeCCCCC----------------------------------
Q 026295 162 MFRKASC--------------------------ISASISWNPQKGE---------------------------------- 181 (240)
Q Consensus 162 ~~~~~~~--------------------------~~~~v~~~p~~~~---------------------------------- 181 (240)
+.|+... .+.+.+.+.++..
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence 2222110 2233333333322
Q ss_pred ------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 182 ------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 182 ------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.+..++|+|+.| +.|+||+..+++ +..++. ||+..|++|+|+|..
T Consensus 444 rSCFgg~~~~fiaSGSED-----~kvyIWhr~sgk----ll~~Ls---GHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSED-----SKVYIWHRISGK----LLAVLS---GHSKTVNCVSWNPAD 494 (519)
T ss_pred EeccCCCCcceEEecCCC-----ceEEEEEccCCc----eeEeec---CCcceeeEEecCCCC
Confidence 455688999998 999999998865 445555 788899999999964
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.3e-27 Score=186.69 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=164.8
Q ss_pred chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEe----EeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295 3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNL----KTKVHAGAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~~ 77 (240)
+...+|.+.|.+++++.-+ .+|+++|.|+++++|++..........+. +...|...|++++.+|+ ..++++|+
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~S 482 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGS 482 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecc
Confidence 3456899999999998765 79999999999999999863211111222 33479999999999999 99999999
Q ss_pred cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.|.+.+||++... ....++.+|+..|+++.|+| +.+.+++++.|++|+||.+.+ +.+..+|.+|.
T Consensus 483 qDktaKiW~le~~-------~l~~vLsGH~RGvw~V~Fs~--~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~ 547 (775)
T KOG0319|consen 483 QDKTAKIWDLEQL-------RLLGVLSGHTRGVWCVSFSK--NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHT 547 (775)
T ss_pred cccceeeecccCc-------eEEEEeeCCccceEEEEecc--ccceeEeccCCceEEEEEecc------ceeeeeecCcc
Confidence 9999999999866 89999999999999999999 999999999999999999998 89999999988
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..|- .++|-.++. .|+++++| |.|+||++.+..+...+ . .|.+.|++++-+|.
T Consensus 548 ~aVl----------ra~F~~~~~-----qliS~~ad-----GliKlWnikt~eC~~tl----D---~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 548 SAVL----------RASFIRNGK-----QLISAGAD-----GLIKLWNIKTNECEMTL----D---AHNDRVWALSVSPL 600 (775)
T ss_pred ceeE----------eeeeeeCCc-----EEEeccCC-----CcEEEEeccchhhhhhh----h---hccceeEEEeecCc
Confidence 7776 888988887 79999999 99999999998877554 3 58889999999886
Q ss_pred C
Q 026295 238 I 238 (240)
Q Consensus 238 ~ 238 (240)
.
T Consensus 601 ~ 601 (775)
T KOG0319|consen 601 L 601 (775)
T ss_pred c
Confidence 4
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=168.83 Aligned_cols=196 Identities=16% Similarity=0.279 Sum_probs=163.7
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
++.++|...|.+++|+.+|.+|++|+.|+++++|++... ....-...++|.+.|-.++|.|. ..++|++++.|.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~---r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD---RFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch---hhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceE
Confidence 456788899999999999999999999999999999843 22222345689999999999887 46789999999999
Q ss_pred EEEEeeeccC----------------------------------------------------------------------
Q 026295 83 LLWEEIVEDA---------------------------------------------------------------------- 92 (240)
Q Consensus 83 ~iwd~~~~~~---------------------------------------------------------------------- 92 (240)
++||++....
T Consensus 90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 9999654311
Q ss_pred -----CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 93 -----QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
..++.+++..++.|...+.+|.|+| +|++||+|+.|..+.+||+.. ..+...+..+.-+|+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p--~GryfA~GsADAlvSLWD~~E------LiC~R~isRldwpVR------ 235 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDP--DGRYFATGSADALVSLWDVDE------LICERCISRLDWPVR------ 235 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECC--CCceEeeccccceeeccChhH------hhhheeeccccCceE------
Confidence 0144455667778989999999999 999999999999999999987 677778888888888
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.++|+-++. +||+|+.| ..|-|=++.++.+.|.. .|.++...|+|+|.-
T Consensus 236 ----TlSFS~dg~-----~lASaSED-----h~IDIA~vetGd~~~eI--------~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 236 ----TLSFSHDGR-----MLASASED-----HFIDIAEVETGDRVWEI--------PCEGPTFTVAWHPKR 284 (313)
T ss_pred ----EEEeccCcc-----eeeccCcc-----ceEEeEecccCCeEEEe--------eccCCceeEEecCCC
Confidence 999999988 99999999 99999999999877766 366699999999964
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=6.2e-25 Score=167.68 Aligned_cols=188 Identities=22% Similarity=0.315 Sum_probs=155.2
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.+++..|.+.|.+++|+|++++|++++.||.|++|++. ..+....+..|...+..+.|+|+ ++++++++.|+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~ 74 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-----TGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKT 74 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-----CCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCe
Confidence 46788999999999999999999999999999999998 33456677788899999999998 889999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
|++|++... +.+..+..+...+.++.|+| ++.++++++.|+.|.+||+++ .+....+..+...+.
T Consensus 75 i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~i~ 139 (289)
T cd00200 75 IRLWDLETG-------ECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVET------GKCLTTLRGHTDWVN 139 (289)
T ss_pred EEEEEcCcc-------cceEEEeccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCC------cEEEEEeccCCCcEE
Confidence 999999865 56777778888999999998 788888888899999999986 455556665655555
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
++.|+|++. ++++++.+ +.|++||+...... ..+. .|...|++++|+|++
T Consensus 140 ----------~~~~~~~~~-----~l~~~~~~-----~~i~i~d~~~~~~~----~~~~---~~~~~i~~~~~~~~~ 189 (289)
T cd00200 140 ----------SVAFSPDGT-----FVASSSQD-----GTIKLWDLRTGKCV----ATLT---GHTGEVNSVAFSPDG 189 (289)
T ss_pred ----------EEEEcCcCC-----EEEEEcCC-----CcEEEEEccccccc----eeEe---cCccccceEEECCCc
Confidence 899999865 67777657 99999999764432 2223 466699999999986
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=6.1e-25 Score=170.24 Aligned_cols=212 Identities=14% Similarity=0.234 Sum_probs=154.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
+++.|...|+|++|+|||.++|+++.||.|.|||-. +++.+..+. +|++.|++++|+|+ +..|++++.|.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-----tge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDk 257 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-----TGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADK 257 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCC-----CccEEEEecCCCCccccEEEEEECCC--CceEEEecCCc
Confidence 467899999999999999999999999999999987 667777777 89999999999999 99999999999
Q ss_pred eEEEEEeeeccC------------------------------------CCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295 81 SLLLWEEIVEDA------------------------------------QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL 124 (240)
Q Consensus 81 ~v~iwd~~~~~~------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 124 (240)
+++|||+....- +.....++..+.+|...|+++..+| ++.+|
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--d~~~i 335 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--DGKTI 335 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--CCCEE
Confidence 999999765311 0011123556778999999999999 99999
Q ss_pred EEEeCCCcEEEEEecCcccccc-----eeEEeeeeccc-c-------------------eee-----ccccc--------
Q 026295 125 VAAYSDGHVKVYELLDPLILKN-----WQLQAEFQNAI-D-------------------SVT-----MFRKA-------- 166 (240)
Q Consensus 125 ~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~~~-~-------------------~v~-----~~~~~-------- 166 (240)
.+|+.||.|.-|+..+...... ...+..+.... . ... +.+..
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 9999999999999865422110 00111111000 0 000 00000
Q ss_pred ---------------------------cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee
Q 026295 167 ---------------------------SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL 219 (240)
Q Consensus 167 ---------------------------~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~ 219 (240)
.-...+++.+|++. .+++|+.| +.|+||.+...... ....+
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-----~vaVGG~D-----gkvhvysl~g~~l~--ee~~~ 483 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-----EVAVGGQD-----GKVHVYSLSGDELK--EEAKL 483 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-----EEEEeccc-----ceEEEEEecCCccc--ceeee
Confidence 00225677777776 89999999 99999999875532 11111
Q ss_pred ecCCCCCCceEEEEEecCCC
Q 026295 220 ALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 220 ~~~~~h~~~v~~v~~sp~~~ 239 (240)
. .|.++|++|++|||+.
T Consensus 484 ~---~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 484 L---EHRAAITDVAYSPDGA 500 (603)
T ss_pred e---cccCCceEEEECCCCc
Confidence 2 4778999999999974
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.6e-26 Score=181.96 Aligned_cols=162 Identities=21% Similarity=0.246 Sum_probs=150.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
...|+..|+|++++|+.+++||||.|++.+||+++ ..+....+.+|+..|.++.|++. .+.+++++.|++|+|
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-----~~~l~~vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-----QLRLLGVLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKI 531 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeeccc-----CceEEEEeeCCccceEEEEeccc--cceeEeccCCceEEE
Confidence 45699999999999999999999999999999999 66889999999999999999999 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
|.+.+. .++.+|.+|+..|..+.|-. ++..|++++.||-+++|++++ .++...+..|...+.
T Consensus 532 W~is~f-------SClkT~eGH~~aVlra~F~~--~~~qliS~~adGliKlWnikt------~eC~~tlD~H~DrvW--- 593 (775)
T KOG0319|consen 532 WSISTF-------SCLKTFEGHTSAVLRASFIR--NGKQLISAGADGLIKLWNIKT------NECEMTLDAHNDRVW--- 593 (775)
T ss_pred EEeccc-------eeeeeecCccceeEeeeeee--CCcEEEeccCCCcEEEEeccc------hhhhhhhhhccceeE---
Confidence 999876 99999999999999999988 999999999999999999998 688999999999888
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
+++-+|... .+++|+.| +.|.+|.=.+
T Consensus 594 -------aL~~~~~~~-----~~~tgg~D-----g~i~~wkD~T 620 (775)
T KOG0319|consen 594 -------ALSVSPLLD-----MFVTGGGD-----GRIIFWKDVT 620 (775)
T ss_pred -------EEeecCccc-----eeEecCCC-----eEEEEeecCc
Confidence 888888876 89999999 9999997443
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=5.9e-27 Score=179.47 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=111.2
Q ss_pred hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+.+|...|.++.|.| .+.+|++|+.|+.|+||++.. ...+++++.+|..+|.+++|+++ |..|++++.|+.|
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRFL 282 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEec----Ccceehhhhcchhhhhhhhcccc--CCeeeeeecceee
Confidence 4678999999999999 889999999999999999975 36899999999999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCc
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~ 141 (240)
++||.+++ +++..|... ..+.++.|+| ++ +.+++|+.|+.|+.||++++
T Consensus 283 KlwDtETG-------~~~~~f~~~-~~~~cvkf~p--d~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 283 KLWDTETG-------QVLSRFHLD-KVPTCVKFHP--DNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred eeeccccc-------eEEEEEecC-CCceeeecCC--CCCcEEEEecCCCcEEEEeccch
Confidence 99999988 888888753 6678999999 66 78999999999999999875
No 44
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=9.6e-26 Score=187.34 Aligned_cols=200 Identities=20% Similarity=0.317 Sum_probs=164.5
Q ss_pred ccc-ccceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCC-------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE
Q 026295 6 ATL-DKGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPS-------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75 (240)
Q Consensus 6 ~~h-~~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 75 (240)
-.| +..|.++..+|+|.++|||+ .|+.++||+.+.-. ..-.+.+.++..|.+.|.|+.|+|+ |++||+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAs 86 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLAS 86 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEee
Confidence 344 45799999999999999999 99999999975311 0012445667789999999999999 999999
Q ss_pred EecCCeEEEEEeeec-----------cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc
Q 026295 76 ICSDGSLLLWEEIVE-----------DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL 144 (240)
Q Consensus 76 ~~~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 144 (240)
|+.|+.|.||..... ......|+....+.+|...|..++|+| ++.+|++++.|++|.+|+.++
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~t---- 160 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKT---- 160 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEcccc----
Confidence 999999999998731 112467999999999999999999999 999999999999999999998
Q ss_pred cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-
Q 026295 145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE- 223 (240)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~- 223 (240)
++.+..+.+|...|. .+.|+|.+. +||+-+.| ++|+||+..+ |.....+..+.
T Consensus 161 --F~~~~vl~~H~s~VK----------Gvs~DP~Gk-----y~ASqsdD-----rtikvwrt~d----w~i~k~It~pf~ 214 (942)
T KOG0973|consen 161 --FELLKVLRGHQSLVK----------GVSWDPIGK-----YFASQSDD-----RTLKVWRTSD----WGIEKSITKPFE 214 (942)
T ss_pred --ceeeeeeeccccccc----------ceEECCccC-----eeeeecCC-----ceEEEEEccc----ceeeEeeccchh
Confidence 788899999998888 899999998 99999998 9999999655 33333332222
Q ss_pred --CCCCceEEEEEecCCC
Q 026295 224 --DRSDEVYAVAWALNIG 239 (240)
Q Consensus 224 --~h~~~v~~v~~sp~~~ 239 (240)
.-+..++-++|||||.
T Consensus 215 ~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred hCCCcceeeecccCCCcC
Confidence 2334689999999984
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=181.78 Aligned_cols=204 Identities=15% Similarity=0.207 Sum_probs=160.6
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.++.+|+++|+.++|+|.+.++++|+.|-.|+||+.. +.+++.++.+|-..|..+.|++. -..++|++.|-+|
T Consensus 45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-----~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTI 117 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-----TRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTI 117 (1202)
T ss_pred hhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-----cceehhhhccccceeEEeeccCC--CceEEEccCCCeE
Confidence 3577899999999999999999999999999999999 77899999999999999999888 7889999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc--ceeEEeeeecc----
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK--NWQLQAEFQNA---- 156 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~---- 156 (240)
+||+-+++ +++..+.+|...|.|..|+| ....+++++.|.+|++||+..-.... .......+..+
T Consensus 118 rIWNwqsr-------~~iavltGHnHYVMcAqFhp--tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~ 188 (1202)
T KOG0292|consen 118 RIWNWQSR-------KCIAVLTGHNHYVMCAQFHP--TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS 188 (1202)
T ss_pred EEEeccCC-------ceEEEEecCceEEEeeccCC--ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence 99999888 99999999999999999999 77889999999999999986311000 00000001111
Q ss_pred -----cceeec--cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295 157 -----IDSVTM--FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV 229 (240)
Q Consensus 157 -----~~~v~~--~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 229 (240)
...|-. ...|-=.||-++|+|... +|++|+.| +.|++|.+...+ -|. +..-.||.+.|
T Consensus 189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-----liVSG~DD-----RqVKlWrmnetK-aWE----vDtcrgH~nnV 253 (1202)
T KOG0292|consen 189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-----LIVSGADD-----RQVKLWRMNETK-AWE----VDTCRGHYNNV 253 (1202)
T ss_pred hhcCCcCeeeeeeecccccccceEEecCCcc-----eEEecCCc-----ceeeEEEecccc-cee----ehhhhcccCCc
Confidence 111100 011122456899999987 88888888 999999987644 232 24455799999
Q ss_pred EEEEEecC
Q 026295 230 YAVAWALN 237 (240)
Q Consensus 230 ~~v~~sp~ 237 (240)
.++-|+|.
T Consensus 254 ssvlfhp~ 261 (1202)
T KOG0292|consen 254 SSVLFHPH 261 (1202)
T ss_pred ceEEecCc
Confidence 99999994
No 46
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=172.73 Aligned_cols=191 Identities=17% Similarity=0.175 Sum_probs=154.0
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+++.-+.+.|.++.|-.||++||+|+..|.|+|||.. +...+..+.+|+.+|..+.|+|. .+..|++|+.|+.+
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-----~r~iLR~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK-----SRVILRQLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVV 135 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-----cHHHHHHHhhccCceeEEEeccc-CCeEEEecCCCceE
Confidence 3466678899999999999999999999999999966 44567888999999999999887 45678888889999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||+.+. .....+.+|+..|++.+|+|. ++.++++|+.||+|++||++.. ...+.++ .|..+|
T Consensus 136 k~~d~s~a-------~v~~~l~~htDYVR~g~~~~~-~~hivvtGsYDg~vrl~DtR~~-----~~~v~el-nhg~pV-- 199 (487)
T KOG0310|consen 136 KYWDLSTA-------YVQAELSGHTDYVRCGDISPA-NDHIVVTGSYDGKVRLWDTRSL-----TSRVVEL-NHGCPV-- 199 (487)
T ss_pred EEEEcCCc-------EEEEEecCCcceeEeeccccC-CCeEEEecCCCceEEEEEeccC-----CceeEEe-cCCCce--
Confidence 99999875 556688899999999999984 5568999999999999999972 1333343 333344
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
..+.+-|.+. ++++++. +.|+|||+.++.+.... ...|...|+|+.+..++.|
T Consensus 200 --------e~vl~lpsgs-----~iasAgG------n~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 200 --------ESVLALPSGS-----LIASAGG------NSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred --------eeEEEcCCCC-----EEEEcCC------CeEEEEEecCCceehhh------hhcccceEEEEEeecCCce
Confidence 4999999987 8888887 79999999876544222 1137779999999987654
No 47
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.4e-24 Score=176.13 Aligned_cols=178 Identities=14% Similarity=0.172 Sum_probs=133.0
Q ss_pred hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCCE-EEEEec
Q 026295 4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGDA-VACICS 78 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~~~ 78 (240)
.+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++...... ...++..+.+|...|.+++|+|. +.. +++++.
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS~ 146 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSGF 146 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEeC
Confidence 36789999999999996 789999999999999999743110 01244567889999999999998 764 578999
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
|+.|++||++.+ +.+..+. +...|.+++|+| +|.+|++++.|++|+|||+++ .+.+..+..|..
T Consensus 147 DgtIrIWDl~tg-------~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g 210 (568)
T PTZ00420 147 DSFVNIWDIENE-------KRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDG 210 (568)
T ss_pred CCeEEEEECCCC-------cEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCC------CcEEEEEecccC
Confidence 999999999876 5555554 457899999999 999999999999999999997 566667777755
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.+.. ..+....|++++. +|++++.++ ...+.|+|||++...
T Consensus 211 ~~~s-----~~v~~~~fs~d~~-----~IlTtG~d~-~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 211 GKNT-----KNIWIDGLGGDDN-----YILSTGFSK-NNMREMKLWDLKNTT 251 (568)
T ss_pred Ccee-----EEEEeeeEcCCCC-----EEEEEEcCC-CCccEEEEEECCCCC
Confidence 4320 0011223556665 777777651 001379999998643
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=7.3e-25 Score=163.64 Aligned_cols=193 Identities=19% Similarity=0.322 Sum_probs=158.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------------------CCcEEEEeEeeecCccEEEEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS--------------------SSSFTCNLKTKVHAGAILKVVW 64 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~--------------------~~~~~~~~~~~~h~~~v~~~~~ 64 (240)
.++|...|-+++..++|.++++|+.|.+|+||+..... .++..++.++.+|.++|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 45899999999999999999999999999999932110 1245677888999999999999
Q ss_pred cCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc
Q 026295 65 VPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL 144 (240)
Q Consensus 65 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~ 144 (240)
++ ...+.+++.|.+|+.||+..+ .....+... ....++..+| ...+|++|+.|..+++||.+++.
T Consensus 269 ~d---~~v~yS~SwDHTIk~WDletg-------~~~~~~~~~-ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~~~-- 333 (423)
T KOG0313|consen 269 SD---ATVIYSVSWDHTIKVWDLETG-------GLKSTLTTN-KSLNCISYSP--LSKLLASGSSDRHIRLWDPRTGD-- 333 (423)
T ss_pred cC---CCceEeecccceEEEEEeecc-------cceeeeecC-cceeEeeccc--ccceeeecCCCCceeecCCCCCC--
Confidence 66 467889999999999999887 566666543 6788999999 89999999999999999999852
Q ss_pred cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCC
Q 026295 145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPED 224 (240)
Q Consensus 145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~ 224 (240)
.-...+.+.+|...|. ++.|+|.... .|++|+.| +++++||+++.... ...+. +
T Consensus 334 -gs~v~~s~~gH~nwVs----------svkwsp~~~~----~~~S~S~D-----~t~klWDvRS~k~p---lydI~---~ 387 (423)
T KOG0313|consen 334 -GSVVSQSLIGHKNWVS----------SVKWSPTNEF----QLVSGSYD-----NTVKLWDVRSTKAP---LYDIA---G 387 (423)
T ss_pred -CceeEEeeecchhhhh----------heecCCCCce----EEEEEecC-----CeEEEEEeccCCCc---ceeec---c
Confidence 2345667889998888 9999999853 88999999 99999999986522 23333 5
Q ss_pred CCCceEEEEEecCC
Q 026295 225 RSDEVYAVAWALNI 238 (240)
Q Consensus 225 h~~~v~~v~~sp~~ 238 (240)
|.+.|.++.|+.-+
T Consensus 388 h~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 388 HNDKVLSVDWNEGG 401 (423)
T ss_pred CCceEEEEeccCCc
Confidence 77899999998753
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=161.31 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=154.3
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v 82 (240)
++..|.++|+.+.|.++++.|++++.|.+|+.||.+ +++.+..+++|..-|+.+. |...| .++.+++.|+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-----tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-----TGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecc-----cceeeehhccccceeeecC--ccccCCeEEEecCCCceE
Confidence 467899999999999999999999999999999999 8899999999999888887 33224 456678889999
Q ss_pred EEEEeeeccCC-----------------------------CcccE-----EEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295 83 LLWEEIVEDAQ-----------------------------PLQWK-----LCKSFESTSTQVLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 83 ~iwd~~~~~~~-----------------------------~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 128 (240)
++||++.++.. -..|. .+..+.+|...|+.+..+| +|.++.+-+
T Consensus 158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~--~gs~llsns 235 (338)
T KOG0265|consen 158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR--YGSFLLSNS 235 (338)
T ss_pred EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc--CCCcccccc
Confidence 99998843220 12233 3566778999999999999 999999999
Q ss_pred CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 129 SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 129 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|.++++||.+.-.+. ..++..+.++ +..+++.+- ..+|+|++. .+..|+.| +.+++||...
T Consensus 236 Md~tvrvwd~rp~~p~--~R~v~if~g~---~hnfeknlL---~cswsp~~~-----~i~ags~d-----r~vyvwd~~~ 297 (338)
T KOG0265|consen 236 MDNTVRVWDVRPFAPS--QRCVKIFQGH---IHNFEKNLL---KCSWSPNGT-----KITAGSAD-----RFVYVWDTTS 297 (338)
T ss_pred ccceEEEEEecccCCC--CceEEEeecc---hhhhhhhcc---eeeccCCCC-----cccccccc-----ceEEEeeccc
Confidence 9999999999852211 2234444443 334444444 678999998 78888888 9999999765
Q ss_pred CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 209 AHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.. ....++ ||.+.|++++|+|.-
T Consensus 298 r~----~lyklp---Gh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 298 RR----ILYKLP---GHYGSVNEVDFHPTE 320 (338)
T ss_pred cc----EEEEcC---CcceeEEEeeecCCC
Confidence 33 334445 566699999999963
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=183.50 Aligned_cols=196 Identities=13% Similarity=0.137 Sum_probs=169.5
Q ss_pred CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
|-+++..-..+|..++|+|....+.++--.|.|++||.+ -+.++..|..|+++|..+.|+|. ..+|+||+.|-
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-----M~tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDy 73 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-----MGTLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDY 73 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCceeeeehhh-----hhhHHhhhhccCCccceeeecCC--CCeEEecCCcc
Confidence 566777778899999999999999999999999999998 56789999999999999999999 99999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.|++|++... +++.++.+|-..|+.+.|++ .-.++++++.|.+|+||+..+ ..++..+.+|...|
T Consensus 74 kIkVWnYk~r-------rclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqs------r~~iavltGHnHYV 138 (1202)
T KOG0292|consen 74 KIKVWNYKTR-------RCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQS------RKCIAVLTGHNHYV 138 (1202)
T ss_pred EEEEEecccc-------eehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccC------CceEEEEecCceEE
Confidence 9999999888 99999999999999999998 888999999999999999988 78999999998777
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC--------------------cc--eeEe
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR--------------------WL--PVAE 218 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~--------------------~~--~~~~ 218 (240)
- |..|+|... ++++|+-| .+|||||...-..+ +. -...
T Consensus 139 M----------cAqFhptED-----lIVSaSLD-----QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 139 M----------CAQFHPTED-----LIVSASLD-----QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred E----------eeccCCccc-----eEEEeccc-----ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence 6 889999877 89999999 99999998531100 00 0011
Q ss_pred eecCCCCCCceEEEEEecCC
Q 026295 219 LALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 219 ~~~~~~h~~~v~~v~~sp~~ 238 (240)
....+||.-.|+-++|+|..
T Consensus 199 K~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred eeeecccccccceEEecCCc
Confidence 12345788899999999953
No 51
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.5e-27 Score=186.69 Aligned_cols=185 Identities=18% Similarity=0.281 Sum_probs=163.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+..|+..|.++.|+++..+|++|+.+|+|++||+. +.+.++++.+|...+..+.|+|- +.++++++.|+.+++
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-----eAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-----EAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKI 138 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehh-----hhhhhhhhhccccCcceeeeccc--eEEecccccccccee
Confidence 67899999999999999999999999999999999 66788899999999999999998 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
||.+.. -|...+.+|...|..+.|+| +|.+++.++.|.+++|||+.. +++..+|..|...+.
T Consensus 139 wD~Rk~-------Gc~~~~~s~~~vv~~l~lsP--~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~v~--- 200 (825)
T KOG0267|consen 139 WDIRKK-------GCSHTYKSHTRVVDVLRLSP--DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGKVQ--- 200 (825)
T ss_pred hhhhcc-------CceeeecCCcceeEEEeecC--CCceeeccCCcceeeeecccc------ccccccccccccccc---
Confidence 999865 68899999999999999999 999999999999999999987 788888888877776
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
++.|+|... +++.|+.| ++|++||+++-. ...... .....|.+++|+|++
T Consensus 201 -------sle~hp~e~-----Lla~Gs~d-----~tv~f~dletfe----~I~s~~---~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 201 -------SLEFHPLEV-----LLAPGSSD-----RTVRFWDLETFE----VISSGK---PETDGVRSLAFNPDG 250 (825)
T ss_pred -------ccccCchhh-----hhccCCCC-----ceeeeeccceeE----EeeccC---CccCCceeeeecCCc
Confidence 889999987 89999999 999999998632 111111 234489999999987
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=6.6e-24 Score=183.75 Aligned_cols=200 Identities=17% Similarity=0.128 Sum_probs=151.9
Q ss_pred hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+..|.+.|++++|+| ++.+|++|+.|++|++||+. +...+..+..+ ..|.++.|.++ .+.+|++|+.|+.|
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-----~~~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I 642 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-----QGVSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKV 642 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-----CCcEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeE
Confidence 4667999999999997 78999999999999999998 44566667654 67999999543 28999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||++... .++..+.+|...|..+.|. ++.+|++++.|++|++||++.......+.++..+.+|...+.
T Consensus 643 ~iwD~~~~~------~~~~~~~~h~~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~- 712 (793)
T PLN00181 643 YYYDLRNPK------LPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN- 712 (793)
T ss_pred EEEECCCCC------ccceEecCCCCCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee-
Confidence 999997641 2566777899999999995 466799999999999999975322222345566666655554
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE----eee--cCCCCCCceEEEEEec
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA----ELA--LPEDRSDEVYAVAWAL 236 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~----~~~--~~~~h~~~v~~v~~sp 236 (240)
.++|+|++. +|++|+.| +.|+||+.......+.... .+. ....|...|.+++|+|
T Consensus 713 ---------~v~~s~~~~-----~lasgs~D-----~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 713 ---------FVGLSVSDG-----YIATGSET-----NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ---------EEEEcCCCC-----EEEEEeCC-----CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 899999987 99999999 9999999765432211100 000 1124666899999999
Q ss_pred CCC
Q 026295 237 NIG 239 (240)
Q Consensus 237 ~~~ 239 (240)
++.
T Consensus 774 ~~~ 776 (793)
T PLN00181 774 QSS 776 (793)
T ss_pred CCC
Confidence 874
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4.1e-24 Score=153.10 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=157.6
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.|++|+.+++-+.++.+|.+|.+|+.|.++.||-.. .++.+.++.+|++.|+++....+ ...+++|+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-----nGerlGty~GHtGavW~~Did~~--s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-----NGERLGTYDGHTGAVWCCDIDWD--SKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEec-----CCceeeeecCCCceEEEEEecCC--cceeeeccccceeE
Confidence 378999999999999999999999999999999887 56789999999999999999887 89999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-----CCcEEEEEecCccc-ccceeEEeeeeccc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-----DGHVKVYELLDPLI-LKNWQLQAEFQNAI 157 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~-~~~~~~~~~~~~~~ 157 (240)
+||+.++ +.+..++. ...|..+.|++ .|.+++.... .+.|.++|++.+.. ...-++...+..+.
T Consensus 78 LWDv~tG-------k~la~~k~-~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 78 LWDVETG-------KQLATWKT-NSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred EEEcCCC-------cEEEEeec-CCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 9999988 88888875 47899999998 8887766653 36799999986432 22234455555555
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+. .+-|.|.+. .|++|..+ |.|.+||++++... +. ..+.|+..|++++|+||
T Consensus 148 skit----------~a~Wg~l~~-----~ii~Ghe~-----G~is~~da~~g~~~---v~---s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 148 SKIT----------SALWGPLGE-----TIIAGHED-----GSISIYDARTGKEL---VD---SDEEHSSKINDLQFSRD 201 (327)
T ss_pred ccee----------eeeecccCC-----EEEEecCC-----CcEEEEEcccCcee---ee---chhhhccccccccccCC
Confidence 4444 788999988 89999888 99999999987522 22 22348889999999998
Q ss_pred CC
Q 026295 238 IG 239 (240)
Q Consensus 238 ~~ 239 (240)
..
T Consensus 202 ~T 203 (327)
T KOG0643|consen 202 RT 203 (327)
T ss_pred cc
Confidence 63
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=151.90 Aligned_cols=189 Identities=14% Similarity=0.237 Sum_probs=144.5
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
++..+|...|..++.+.|...|++|+.|+.|.+||+. +++.++.+.+|.+.|+.++|+.. ...+++|+.|.++
T Consensus 53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-----TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~ 125 (307)
T KOG0316|consen 53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-----TGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSV 125 (307)
T ss_pred eeecCCCceeeeccccccccccccCCCCceEEEEEcc-----cCeeeeecccccceeeEEEecCc--ceEEEecccccee
Confidence 4567899999999999999999999999999999999 88999999999999999999988 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||-+... +++++.+......|.++.. .+..+++|+.||+++.||++. +.+....-++ +|
T Consensus 126 r~wDCRS~s-----~ePiQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~------G~l~sDy~g~--pi-- 186 (307)
T KOG0316|consen 126 RLWDCRSRS-----FEPIQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRK------GTLSSDYFGH--PI-- 186 (307)
T ss_pred EEEEcccCC-----CCccchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeec------ceeehhhcCC--cc--
Confidence 999998753 3788888877788888877 455688888888888888886 3332222121 11
Q ss_pred cccccceeeeEEEeCCCCC---------------------------------------CCCceEEEEecCCCCCCCeEEE
Q 026295 163 FRKASCISASISWNPQKGE---------------------------------------NQGSSFVLGFNSDTPQLNSSKV 203 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~---------------------------------------~~~~~l~~~~~dd~~~~~~i~i 203 (240)
++++|++++.- .....++.|+.| |.|++
T Consensus 187 --------t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED-----G~Vy~ 253 (307)
T KOG0316|consen 187 --------TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED-----GKVYF 253 (307)
T ss_pred --------eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC-----ceEEE
Confidence 24444444432 223367777777 99999
Q ss_pred EEeecCCCCcceeEeeecCCCCCCc-eEEEEEecC
Q 026295 204 WEFDEAHNRWLPVAELALPEDRSDE-VYAVAWALN 237 (240)
Q Consensus 204 w~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~sp~ 237 (240)
||+...... ..++ .|+.. |.+++++|.
T Consensus 254 wdLvd~~~~----sk~~---~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 254 WDLVDETQI----SKLS---VVSTVIVTDLSCHPT 281 (307)
T ss_pred EEeccceee----eeec---cCCceeEEeeecccC
Confidence 999876532 2222 23335 799999985
No 55
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.2e-24 Score=171.36 Aligned_cols=183 Identities=20% Similarity=0.327 Sum_probs=154.3
Q ss_pred ccceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
+..|..++|+..|..||.|+.. |.+-||+.. ....+...++|-..+.+++++|+ |+++++|+.||.|+|||.
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-----sEsYVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-----SESYVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNT 379 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEee-----ccceeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEec
Confidence 3578899999999999998765 799999998 44677788899999999999999 999999999999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc-eeeccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID-SVTMFRKA 166 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~ 166 (240)
+.+ -|+.+|..|+..|+.++|+. .++.+++.+.||+|+.||+.. +....++..+.. ...
T Consensus 380 ~Sg-------fC~vTFteHts~Vt~v~f~~--~g~~llssSLDGtVRAwDlkR------YrNfRTft~P~p~Qfs----- 439 (893)
T KOG0291|consen 380 QSG-------FCFVTFTEHTSGVTAVQFTA--RGNVLLSSSLDGTVRAWDLKR------YRNFRTFTSPEPIQFS----- 439 (893)
T ss_pred cCc-------eEEEEeccCCCceEEEEEEe--cCCEEEEeecCCeEEeeeecc------cceeeeecCCCceeee-----
Confidence 887 89999999999999999988 999999999999999999987 566666654322 223
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++-+|.+. ++..|+.|. =.|++|++++++ +...|. ||+++|.+++|+|++.
T Consensus 440 -----cvavD~sGe-----lV~AG~~d~----F~IfvWS~qTGq----llDiLs---GHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 440 -----CVAVDPSGE-----LVCAGAQDS----FEIFVWSVQTGQ----LLDILS---GHEGPVSGLSFSPDGS 491 (893)
T ss_pred -----EEEEcCCCC-----EEEeeccce----EEEEEEEeecCe----eeehhc---CCCCcceeeEEccccC
Confidence 888899987 666666663 489999999986 333334 6777999999999874
No 56
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=181.04 Aligned_cols=185 Identities=18% Similarity=0.325 Sum_probs=151.9
Q ss_pred eEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295 12 TTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE 90 (240)
Q Consensus 12 v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 90 (240)
+..+.|+. +.++|||++..|.|.+||+.... .-+++..|..|+..++.+.|++. -..+|++|++||.|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--cchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence 44567764 56899999999999999998632 23556678899999999999876 3689999999999999999987
Q ss_pred cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295 91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 170 (240)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (240)
+...++.+....|+.|+|+|. .+.+|+++...|.+++||+|.+ -.+...+..|.+++.
T Consensus 167 -------~S~~t~~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~--------- 224 (839)
T KOG0269|consen 167 -------KSKSTFRSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVL--------- 224 (839)
T ss_pred -------cccccccccchhhhceeeccC-CCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceE---------
Confidence 667778888899999999996 4677999999999999999986 455667788988887
Q ss_pred eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
++.|+|++. +||||+.| +.|+||+..+.... ....+. -..+|..|.|.|.-
T Consensus 225 -c~nwhPnr~-----~lATGGRD-----K~vkiWd~t~~~~~--~~~tIn----Tiapv~rVkWRP~~ 275 (839)
T KOG0269|consen 225 -CLNWHPNRE-----WLATGGRD-----KMVKIWDMTDSRAK--PKHTIN----TIAPVGRVKWRPAR 275 (839)
T ss_pred -EEeecCCCc-----eeeecCCC-----ccEEEEeccCCCcc--ceeEEe----ecceeeeeeeccCc
Confidence 999999887 99999999 99999999865432 222332 33489999999974
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.8e-26 Score=167.97 Aligned_cols=169 Identities=15% Similarity=0.246 Sum_probs=144.0
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
...+.|..|+|||++|++|+.||.|.+|+.....-. ..+.-..+.-++.+|.++.|+.+ ..++++|+.||.|++|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIKVW 290 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEEEE
Confidence 456889999999999999999999999998732100 11122234457889999999999 9999999999999999
Q ss_pred EeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 86 EEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.+.++ .+++.|. .|+..|+++.|+. ++..+++++.|.++++--+.+ +++..++.+|...+.
T Consensus 291 ri~tG-------~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKS------GK~LKEfrGHsSyvn--- 352 (508)
T KOG0275|consen 291 RIETG-------QCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKS------GKCLKEFRGHSSYVN--- 352 (508)
T ss_pred EEecc-------hHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEecccc------chhHHHhcCcccccc---
Confidence 99988 8999987 7999999999988 888899999999999998887 788888888877766
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL 214 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~ 214 (240)
...|.+++. .++++++| |+|++|+..+.++..+
T Consensus 353 -------~a~ft~dG~-----~iisaSsD-----gtvkvW~~KtteC~~T 385 (508)
T KOG0275|consen 353 -------EATFTDDGH-----HIISASSD-----GTVKVWHGKTTECLST 385 (508)
T ss_pred -------ceEEcCCCC-----eEEEecCC-----ccEEEecCcchhhhhh
Confidence 899999998 89999999 9999999988776543
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=152.28 Aligned_cols=191 Identities=12% Similarity=0.167 Sum_probs=151.0
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
++.-++.|+.+...|+++.||+++. ..||+||+... ...++.++.+|+..|..+.|..+ |+.+++|+.||+++|
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~---np~Pv~t~e~h~kNVtaVgF~~d--grWMyTgseDgt~kI 109 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN---NPNPVATFEGHTKNVTAVGFQCD--GRWMYTGSEDGTVKI 109 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCC---CCCceeEEeccCCceEEEEEeec--CeEEEecCCCceEEE
Confidence 4445668999999999999999987 68999999854 33478999999999999999888 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec-ccceeecc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN-AIDSVTMF 163 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 163 (240)
||++.. .+.+.++ +..+|+++..+| +...|+++..+|.|++||+... .+..++-. ....++
T Consensus 110 WdlR~~-------~~qR~~~-~~spVn~vvlhp--nQteLis~dqsg~irvWDl~~~------~c~~~liPe~~~~i~-- 171 (311)
T KOG0315|consen 110 WDLRSL-------SCQRNYQ-HNSPVNTVVLHP--NQTELISGDQSGNIRVWDLGEN------SCTHELIPEDDTSIQ-- 171 (311)
T ss_pred EeccCc-------ccchhcc-CCCCcceEEecC--CcceEEeecCCCcEEEEEccCC------ccccccCCCCCccee--
Confidence 999875 5555555 459999999999 8888999999999999999873 23333222 223344
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
++...|++. +|+.+..- |..++|++-+.. ....+.++.....|+..+...-+|||+
T Consensus 172 --------sl~v~~dgs-----ml~a~nnk-----G~cyvW~l~~~~-~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 172 --------SLTVMPDGS-----MLAAANNK-----GNCYVWRLLNHQ-TASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred --------eEEEcCCCc-----EEEEecCC-----ccEEEEEccCCC-ccccceEhhheecccceEEEEEECCCC
Confidence 888999997 77777776 999999997733 223334444444677789999999997
No 59
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.2e-23 Score=170.88 Aligned_cols=189 Identities=9% Similarity=0.095 Sum_probs=141.1
Q ss_pred hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+.+|...|.+++|+|++ ++|++|+.|++|+|||+. +.+.+..+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-----tg~~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~I 192 (493)
T PTZ00421 120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-----RGKAVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKL 192 (493)
T ss_pred EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-----CCeEEEEEcCCCCceEEEEEECC--CCEEEEecCCCEE
Confidence 467899999999999986 799999999999999998 55677888899999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeecccc-EEeEEEeecCCCcEEEEEe----CCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQ-VLDVQFGVSSTSLKLVAAY----SDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
++||++.+ +.+..+..|... +..+.|.+ ++..+++++ .|+.|++||++... ........+.
T Consensus 193 rIwD~rsg-------~~v~tl~~H~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~~d~ 258 (493)
T PTZ00421 193 NIIDPRDG-------TIVSSVEAHASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVDLDQ 258 (493)
T ss_pred EEEECCCC-------cEEEEEecCCCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEeccCC
Confidence 99999876 677777777654 34677887 666666554 47899999998632 1121111111
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
. +.+....|+|++. +|++|+. | +.|++|++.++.... ..+. .+..++..++|.|
T Consensus 259 ~---------~~~~~~~~d~d~~-----~L~lggkgD-----g~Iriwdl~~~~~~~--~~~~----~s~~~~~g~~~~p 313 (493)
T PTZ00421 259 S---------SALFIPFFDEDTN-----LLYIGSKGE-----GNIRCFELMNERLTF--CSSY----SSVEPHKGLCMMP 313 (493)
T ss_pred C---------CceEEEEEcCCCC-----EEEEEEeCC-----CeEEEEEeeCCceEE--Eeec----cCCCCCcceEecc
Confidence 1 1112456888887 7888775 6 999999998764221 1111 2455788888888
Q ss_pred CC
Q 026295 237 NI 238 (240)
Q Consensus 237 ~~ 238 (240)
.-
T Consensus 314 k~ 315 (493)
T PTZ00421 314 KW 315 (493)
T ss_pred cc
Confidence 53
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=1.5e-25 Score=166.07 Aligned_cols=187 Identities=14% Similarity=0.254 Sum_probs=127.9
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC---------------
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP--------------- 67 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--------------- 67 (240)
++|.+|.+.|.|+.|. .+.+++|+.|.+|+|||.+ +++++.++-.|...|..+.|+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-----tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-----TGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD 303 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc-----CCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence 5688999999988864 5699999999999999998 55666666666666666655321
Q ss_pred ------------------------CCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE
Q 026295 68 ------------------------EFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK 123 (240)
Q Consensus 68 ------------------------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 123 (240)
-+.+++++++.|.+|++|+..+. +.++++.+|...|-++.+ .+++
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~-------efvRtl~gHkRGIAClQY----r~rl 372 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC-------EFVRTLNGHKRGIACLQY----RDRL 372 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccce-------eeehhhhcccccceehhc----cCeE
Confidence 00234555555555555555444 566666667667766665 6667
Q ss_pred EEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295 124 LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 203 (240)
Q Consensus 124 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i 203 (240)
+++|++|.+|++||+.. +.+...+++|..-++ ++.|+.. .+++|+.| |+|+|
T Consensus 373 vVSGSSDntIRlwdi~~------G~cLRvLeGHEeLvR----------ciRFd~k-------rIVSGaYD-----Gkikv 424 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIEC------GACLRVLEGHEELVR----------CIRFDNK-------RIVSGAYD-----GKIKV 424 (499)
T ss_pred EEecCCCceEEEEeccc------cHHHHHHhchHHhhh----------heeecCc-------eeeecccc-----ceEEE
Confidence 77777777777777765 566666667766666 7888654 69999999 99999
Q ss_pred EEeecCCCCcceeEeee--cCCCCCCceEEEEEe
Q 026295 204 WEFDEAHNRWLPVAELA--LPEDRSDEVYAVAWA 235 (240)
Q Consensus 204 w~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s 235 (240)
||+........+..++. ....|++.|..++|.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 99988765543322221 122477788888874
No 61
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=159.70 Aligned_cols=204 Identities=13% Similarity=0.146 Sum_probs=156.7
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+|.+|-..|..+++|+-..||++++.|+.|+.||+. ..+.++.+.+|-..|++++..|. -+.|++++.|.+++
T Consensus 188 tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-----~nkvIR~YhGHlS~V~~L~lhPT--ldvl~t~grDst~R 260 (460)
T KOG0285|consen 188 TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-----YNKVIRHYHGHLSGVYCLDLHPT--LDVLVTGGRDSTIR 260 (460)
T ss_pred eecchhheeeeeeecccCceEEEecCCCeeEEEech-----hhhhHHHhccccceeEEEecccc--ceeEEecCCcceEE
Confidence 466788999999999999999999999999999999 44788999999999999999998 89999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM- 162 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~- 162 (240)
+||+++. ..+..+.+|...|..+.+.| ....+++|+.|++|++||++.+ +-...+..|...++.
T Consensus 261 vWDiRtr-------~~V~~l~GH~~~V~~V~~~~--~dpqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral 325 (460)
T KOG0285|consen 261 VWDIRTR-------ASVHVLSGHTNPVASVMCQP--TDPQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRAL 325 (460)
T ss_pred Eeeeccc-------ceEEEecCCCCcceeEEeec--CCCceEEecCCceEEEeeeccC------ceeEeeecccceeeEE
Confidence 9999988 78999999999999999987 5556999999999999999863 322333333333321
Q ss_pred ------------------------------cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 163 ------------------------------FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 163 ------------------------------~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
...+...+++++-+.++ ++++|+.. |.+..||..++..-
T Consensus 326 ~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~------v~~~G~dn-----g~~~fwdwksg~ny 394 (460)
T KOG0285|consen 326 CLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG------VLVSGGDN-----GSIMFWDWKSGHNY 394 (460)
T ss_pred ecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc------eEEEcCCc-----eEEEEEecCcCccc
Confidence 01112244555555555 78889888 99999999887533
Q ss_pred ccee-EeeecCCCCCCceEEEEEecCCCC
Q 026295 213 WLPV-AELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 213 ~~~~-~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
.... ..-++.-.-+..|++.+|...+.|
T Consensus 395 Q~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 395 QRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred ccccccccCCccccccceeEEeecccCce
Confidence 2211 111222224457899999887754
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-23 Score=151.99 Aligned_cols=191 Identities=14% Similarity=0.140 Sum_probs=152.4
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--C
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--D 79 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d 79 (240)
+|.+....+.|+++.|+.+|.+|++++.|.+++|||.. .++.+.++..++-.+..++|.+. ...++.++. |
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-----~g~~~~ti~skkyG~~~~~Fth~--~~~~i~sStk~d 79 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-----SGKQVKTINSKKYGVDLACFTHH--SNTVIHSSTKED 79 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-----CCceeeEeecccccccEEEEecC--CceEEEccCCCC
Confidence 45567777899999999999999999999999999998 66788888877778999999887 666666655 8
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.+|+..++..+ +.++.|.+|...|.+++.+| -+..+++++.|++|++||++.. +++..+.....+
T Consensus 80 ~tIryLsl~dN-------kylRYF~GH~~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~------~cqg~l~~~~~p 144 (311)
T KOG1446|consen 80 DTIRYLSLHDN-------KYLRYFPGHKKRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVK------KCQGLLNLSGRP 144 (311)
T ss_pred CceEEEEeecC-------ceEEEcCCCCceEEEEEecC--CCCeEEecccCCeEEeeEecCC------CCceEEecCCCc
Confidence 89999999877 99999999999999999999 7788999999999999999962 333333222221
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
..+|+|.+- ++|++... ..|++||++.-.... ...+....+-....+.|.|||||
T Consensus 145 ------------i~AfDp~GL-----ifA~~~~~-----~~IkLyD~Rs~dkgP--F~tf~i~~~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 145 ------------IAAFDPEGL-----IFALANGS-----ELIKLYDLRSFDKGP--FTTFSITDNDEAEWTDLEFSPDG 199 (311)
T ss_pred ------------ceeECCCCc-----EEEEecCC-----CeEEEEEecccCCCC--ceeEccCCCCccceeeeEEcCCC
Confidence 678999997 88888876 799999998764332 22222222334478999999998
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=7.8e-24 Score=151.69 Aligned_cols=170 Identities=11% Similarity=0.164 Sum_probs=141.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-----
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----- 78 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----- 78 (240)
+..+|.++|+|+..+.+.++|+||+.|.++++||+. +++++..++. ..+|..+.|++. |++++....
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-----tGk~la~~k~-~~~Vk~~~F~~~--gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-----TGKQLATWKT-NSPVKRVDFSFG--GNLILASTDKQMGY 118 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcC-----CCcEEEEeec-CCeeEEEeeccC--CcEEEEEehhhcCc
Confidence 467899999999999999999999999999999999 7888988885 678999999999 888776543
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
.+.|.++|++........-.+...+..+.+.++.+-|.| -+++|++|..||.|.+||.+++ .+.+.....|..
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g-----~~~v~s~~~h~~ 191 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTG-----KELVDSDEEHSS 191 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccC-----ceeeechhhhcc
Confidence 368999999854322122256777777889999999999 9999999999999999999974 355555556655
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|. .++++|+.. ++++++.| .+-++||+++
T Consensus 192 ~In----------d~q~s~d~T-----~FiT~s~D-----ttakl~D~~t 221 (327)
T KOG0643|consen 192 KIN----------DLQFSRDRT-----YFITGSKD-----TTAKLVDVRT 221 (327)
T ss_pred ccc----------cccccCCcc-----eEEecccC-----ccceeeeccc
Confidence 555 999999998 99999999 9999999865
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=5.4e-24 Score=158.29 Aligned_cols=122 Identities=20% Similarity=0.338 Sum_probs=107.9
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|.+.|+++.|+.+|.+||||+.+|.|+||+.. +......+..--..+-=++|+|. +..|+.|+.||.+.
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-----tg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvW 173 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-----TGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVW 173 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-----cCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEE
Confidence 467899999999999999999999999999999998 44444555433456778999998 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
+|.+.++ ...+.+.+|..++++-.|.| +|+.++++..||+|++|++.+.
T Consensus 174 mw~ip~~-------~~~kv~~Gh~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 174 MWQIPSQ-------ALCKVMSGHNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred EEECCCc-------ceeeEecCCCCCcccccccC--CCceEEEEecCceEEEEecCCC
Confidence 9999775 67888999999999999999 9999999999999999999874
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=2.8e-23 Score=158.52 Aligned_cols=187 Identities=21% Similarity=0.378 Sum_probs=152.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+..|...|.++.|+++++++++++.|+.|++|++. +.+....+..|...+.++.|+|+ +.++++++.|+.|+
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~ 160 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKCLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIK 160 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-----CcEEEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEE
Confidence 355678899999999999999999889999999998 45677778889999999999998 88888888899999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||++.. +....+..+...+.++.|+| ++..+++++.|+.|++||++. .+....+..+...+.
T Consensus 161 i~d~~~~-------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~-- 223 (289)
T cd00200 161 LWDLRTG-------KCVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVN-- 223 (289)
T ss_pred EEEcccc-------ccceeEecCccccceEEECC--CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceE--
Confidence 9999765 67777778888999999999 888899999999999999986 455555555555555
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
++.|+|++. ++++++.+ +.|++|++.+.. ....+. .|...|.+++|+|++.
T Consensus 224 --------~~~~~~~~~-----~~~~~~~~-----~~i~i~~~~~~~----~~~~~~---~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 224 --------SVAFSPDGY-----LLASGSED-----GTIRVWDLRTGE----CVQTLS---GHTNSVTSLAWSPDGK 274 (289)
T ss_pred --------EEEEcCCCc-----EEEEEcCC-----CcEEEEEcCCce----eEEEcc---ccCCcEEEEEECCCCC
Confidence 899999865 67766657 999999987643 223333 4677999999999853
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=3.7e-23 Score=179.09 Aligned_cols=187 Identities=16% Similarity=0.244 Sum_probs=147.3
Q ss_pred ccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
...|.+++|++ .+.+|++++.||+|+|||+. +.+.+..+.+|.+.|++++|+|. .+.+|++++.|+.|++||+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~-----~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVA-----RSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECC-----CCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEEC
Confidence 45788999987 47899999999999999998 55778888999999999999973 1789999999999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
..+ ..+..+..+ ..+.++.|++. ++.+|++|+.||.|++||++.. ......+..|...+.
T Consensus 606 ~~~-------~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~------ 665 (793)
T PLN00181 606 NQG-------VSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVS------ 665 (793)
T ss_pred CCC-------cEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEE------
Confidence 765 666666644 67889999541 6889999999999999999863 123344556666666
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC--CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN--RWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
++.|.+ +. +|++++.| +.|+|||+..... .+.....+ .+|...++.++|+|+++
T Consensus 666 ----~v~f~~-~~-----~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~---~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 666 ----YVRFVD-SS-----TLVSSSTD-----NTLKLWDLSMSISGINETPLHSF---MGHTNVKNFVGLSVSDG 721 (793)
T ss_pred ----EEEEeC-CC-----EEEEEECC-----CEEEEEeCCCCccccCCcceEEE---cCCCCCeeEEEEcCCCC
Confidence 899974 33 79999998 9999999875421 12233333 36888999999999864
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.6e-24 Score=154.05 Aligned_cols=202 Identities=18% Similarity=0.245 Sum_probs=146.8
Q ss_pred cccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 8 LDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 8 h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
-++.|.+++||| ...++++++.|++||+|++...+ .... .....|.++|.+++|+.+ |..+++++.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~-ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVP-KAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC--cccc-hhhhccCCCeEEEEEccC--CceEEeeccCCceEEEE
Confidence 356899999999 55677799999999999998643 1112 344578999999999999 99999999999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee------------------
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ------------------ 148 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------------------ 148 (240)
+..+ .+..+..|..+|..+.|-+..+...|++|+.|.+|++||++.+.+....+
T Consensus 101 L~S~--------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVa 172 (347)
T KOG0647|consen 101 LASG--------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVA 172 (347)
T ss_pred ccCC--------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEE
Confidence 9874 46667789999999999874344589999999999999997543221100
Q ss_pred ------------------------------EEeeeecccc----------ee---ec---c--------------ccccc
Q 026295 149 ------------------------------LQAEFQNAID----------SV---TM---F--------------RKASC 168 (240)
Q Consensus 149 ------------------------------~~~~~~~~~~----------~v---~~---~--------------~~~~~ 168 (240)
++..+..... .+ .+ . ....-
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 0000000000 00 00 0 00012
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.||+++|+|... .|+|+++| |++..||-+...+.. ..+.|..+|++.+|+-+|.
T Consensus 253 aVNsi~FhP~hg-----tlvTaGsD-----Gtf~FWDkdar~kLk-------~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 253 AVNSIAFHPVHG-----TLVTAGSD-----GTFSFWDKDARTKLK-------TSETHPQPITCCSFNRNGS 306 (347)
T ss_pred EecceEeecccc-----eEEEecCC-----ceEEEecchhhhhhh-------ccCcCCCccceeEecCCCC
Confidence 578999999887 89999999 999999987654332 2234777999999998874
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-23 Score=144.70 Aligned_cols=193 Identities=17% Similarity=0.262 Sum_probs=149.4
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC-----------------------------------------
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS----------------------------------------- 43 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 43 (240)
-+.|.+.|.|.+|+|+|.+||+|+.|++|++..+.....
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 345888999999999999999999999999976543210
Q ss_pred ------CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee-------ccccE
Q 026295 44 ------SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES-------TSTQV 110 (240)
Q Consensus 44 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-------~~~~v 110 (240)
++++..+.+.+|++-|.++- +-+ +-++++|++|.+|+.||++.. .++.++.. ....|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~-------~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVN-------SCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeecc-------ceeeeccCcccCCCccccee
Confidence 11222334456666665542 123 678999999999999999876 66666542 34678
Q ss_pred EeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEE
Q 026295 111 LDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190 (240)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~ 190 (240)
.+++..| .|++|++|-.|....+||++. ..+++.+..|...|+ +|.|+|... +++++
T Consensus 235 aav~vdp--sgrll~sg~~dssc~lydirg------~r~iq~f~phsadir----------~vrfsp~a~-----yllt~ 291 (350)
T KOG0641|consen 235 AAVAVDP--SGRLLASGHADSSCMLYDIRG------GRMIQRFHPHSADIR----------CVRFSPGAH-----YLLTC 291 (350)
T ss_pred EEEEECC--CcceeeeccCCCceEEEEeeC------CceeeeeCCCcccee----------EEEeCCCce-----EEEEe
Confidence 9999999 999999999999999999998 688889999988888 999999987 99999
Q ss_pred ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 191 FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 191 ~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+.| .+|++-|++...........+. .|.+.+-.+.|+|..
T Consensus 292 syd-----~~ikltdlqgdla~el~~~vv~---ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 292 SYD-----MKIKLTDLQGDLAHELPIMVVA---EHKDKAIQCRWHPQD 331 (350)
T ss_pred ccc-----ceEEEeecccchhhcCceEEEE---eccCceEEEEecCcc
Confidence 999 9999999987543322333333 366688899999863
No 69
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.3e-25 Score=175.92 Aligned_cols=190 Identities=20% Similarity=0.347 Sum_probs=150.1
Q ss_pred hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+.+|+..++++.|++. -.+|++|+.||+|++||++. -....++.+....|.+|+|+|. .+..|+++...|.+
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----~~S~~t~~~nSESiRDV~fsp~-~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----KKSKSTFRSNSESIRDVKFSPG-YGNKFASIHDSGYL 201 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----ccccccccccchhhhceeeccC-CCceEEEecCCceE
Confidence 36789999999999995 47999999999999999983 3456677778889999999997 57899999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||++..+ ++...+..|.+.|.++.|+| ++.+||+|+.|++|+|||..++.. .....+..
T Consensus 202 qlWDlRqp~------r~~~k~~AH~GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~----~~~~tInT------- 262 (839)
T KOG0269|consen 202 QLWDLRQPD------RCEKKLTAHNGPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRA----KPKHTINT------- 262 (839)
T ss_pred EEeeccCch------hHHHHhhcccCceEEEeecC--CCceeeecCCCccEEEEeccCCCc----cceeEEee-------
Confidence 999998654 66777888999999999999 999999999999999999986321 12222211
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
.+.+..|.|.|.... .||+++. +| -.|+|||++.... +...+. .|...|+.++|.-
T Consensus 263 ----iapv~rVkWRP~~~~----hLAtcsmv~d----tsV~VWDvrRPYI---P~~t~~---eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 263 ----IAPVGRVKWRPARSY----HLATCSMVVD----TSVHVWDVRRPYI---PYATFL---EHTDSVTGIAWDS 319 (839)
T ss_pred ----cceeeeeeeccCccc----hhhhhhcccc----ceEEEEeeccccc---cceeee---ccCccccceeccC
Confidence 112238999999863 7887764 33 7999999987543 333333 5777999999964
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=158.28 Aligned_cols=197 Identities=13% Similarity=0.159 Sum_probs=151.0
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCC------C-------CCCcEEEEeEeeecCccEEEEEEcCCCCCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPD------P-------SSSSFTCNLKTKVHAGAILKVVWVPPEFGD 71 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~------~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 71 (240)
+..|...+++.+|++||.++|||+.|-.|+|.|+.. + .+.....++++..|..+|+++.|.|. ..
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e~ 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--ET 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--hh
Confidence 667999999999999999999999999999999861 1 01122467888999999999999999 99
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA 151 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 151 (240)
+|++++.|++|++||+..... +.....-.....|+++.|+| .|.+|++|..-.++++||+.+ .++..
T Consensus 186 ILiS~srD~tvKlFDfsK~sa-----KrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T------~Qcfv 252 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSA-----KRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNT------YQCFV 252 (430)
T ss_pred eEEeccCCCeEEEEecccHHH-----HHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccc------eeEee
Confidence 999999999999999975421 22112223457899999999 999999999999999999998 55543
Q ss_pred eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295 152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA 231 (240)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~ 231 (240)
.-. |...+...+++|.+++.+. +.++|+.| |.|+|||--.+.+...... .| -...|.+
T Consensus 253 san-------Pd~qht~ai~~V~Ys~t~~-----lYvTaSkD-----G~IklwDGVS~rCv~t~~~---AH--~gsevcS 310 (430)
T KOG0640|consen 253 SAN-------PDDQHTGAITQVRYSSTGS-----LYVTASKD-----GAIKLWDGVSNRCVRTIGN---AH--GGSEVCS 310 (430)
T ss_pred ecC-------cccccccceeEEEecCCcc-----EEEEeccC-----CcEEeeccccHHHHHHHHh---hc--CCceeee
Confidence 321 2222333445999999998 89999999 9999999877655433311 12 2236888
Q ss_pred EEEecCC
Q 026295 232 VAWALNI 238 (240)
Q Consensus 232 v~~sp~~ 238 (240)
..|..|+
T Consensus 311 a~Ftkn~ 317 (430)
T KOG0640|consen 311 AVFTKNG 317 (430)
T ss_pred EEEccCC
Confidence 8888775
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=3.6e-23 Score=160.53 Aligned_cols=191 Identities=17% Similarity=0.357 Sum_probs=156.3
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----C
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----G 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~ 80 (240)
..+|...++-..|+|.|-++|+|...|.|||||.... +.-+..+++.-.++|.+|+|+.+ ++.++..+.- |
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~---~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg 129 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK---EHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFG 129 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc---ceeeeeeeeecccccccceeCCC--CcEEEEEecCcccee
Confidence 4568889999999999999999999999999999754 44556677777899999999999 8888776542 3
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.+.+||. + ..+..+.+|...|.+++|-|.+. -.+++|+.|++|.+|+=.- ++....+..|..-+
T Consensus 130 ~~F~~DS--G-------~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPP------FKFk~s~r~HskFV 193 (603)
T KOG0318|consen 130 HVFLWDS--G-------NSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPP------FKFKSSFREHSKFV 193 (603)
T ss_pred EEEEecC--C-------CccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCC------eeeeecccccccce
Confidence 4566665 4 56788999999999999988533 3599999999999998543 56666777777766
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
. ++.|+|++. +|++++.| |+|.|||-.+++ .+.+++...+|.+.|++|+|+||+.+
T Consensus 194 ~----------~VRysPDG~-----~Fat~gsD-----gki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 194 N----------CVRYSPDGS-----RFATAGSD-----GKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred e----------eEEECCCCC-----eEEEecCC-----ccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCCce
Confidence 6 999999998 89999999 999999988876 45555656678889999999999853
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.5e-23 Score=159.06 Aligned_cols=187 Identities=16% Similarity=0.144 Sum_probs=151.8
Q ss_pred chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
..++.|+.+|..+.|+|++ ..|++|+.|+.+++||+. +......+.+|+..|.+.+|+|. .++++++|+.||.
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-----~a~v~~~l~~htDYVR~g~~~~~-~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-----TAYVQAELSGHTDYVRCGDISPA-NDHIVVTGSYDGK 177 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-----CcEEEEEecCCcceeEeeccccC-CCeEEEecCCCce
Confidence 3478899999999999955 688899999999999998 44456688899999999999987 3679999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
|++||.+..+ ..+.++ .|..+|..+.+-| +|..+++++.+ .|++||+.++ +++...+..|...|+
T Consensus 178 vrl~DtR~~~------~~v~el-nhg~pVe~vl~lp--sgs~iasAgGn-~vkVWDl~~G-----~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 178 VRLWDTRSLT------SRVVEL-NHGCPVESVLALP--SGSLIASAGGN-SVKVWDLTTG-----GQLLTSMFNHNKTVT 242 (487)
T ss_pred EEEEEeccCC------ceeEEe-cCCCceeeEEEcC--CCCEEEEcCCC-eEEEEEecCC-----ceehhhhhcccceEE
Confidence 9999998752 233444 4789999999999 88888888864 7999999864 555556666888887
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
|+.+..++. .|++|+-| +.|++||+.+ ++....+. -.++|.+++.+||+
T Consensus 243 ----------cL~l~s~~~-----rLlS~sLD-----~~VKVfd~t~----~Kvv~s~~----~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 243 ----------CLRLASDST-----RLLSGSLD-----RHVKVFDTTN----YKVVHSWK----YPGPVLSIAVSPDD 291 (487)
T ss_pred ----------EEEeecCCc-----eEeecccc-----cceEEEEccc----eEEEEeee----cccceeeEEecCCC
Confidence 999988776 89999999 9999999665 33444432 44499999999975
No 73
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.1e-24 Score=162.22 Aligned_cols=202 Identities=16% Similarity=0.244 Sum_probs=155.5
Q ss_pred cccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295 6 ATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
.-|++.|+.+++-|+. ..+|+.+..+.|.|||..+... +...+-..+.+|+..-++|+|++.. .-.+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~-~g~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ-EGTLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc-ceeEeeccCC
Confidence 3488999999999966 5777788889999999875321 0223344788999988899998873 3467899999
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
+.|++||+.....+.....+...+.+|...|..++|+|. +...|++++.|+.+.|||+|+. .-++......|...
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~----~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSN----TSKPSHSVKAHSAE 274 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCC----CCCCcccccccCCc
Confidence 999999998654433445667788899999999999985 3446899999999999999962 12334444556555
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+. +++|+|.+.. +||+|++| ++|.+||+++-.. .+...++|...|..|.|||.-
T Consensus 275 vn----------~~~fnp~~~~----ilAT~S~D-----~tV~LwDlRnL~~------~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 275 VN----------CVAFNPFNEF----ILATGSAD-----KTVALWDLRNLNK------PLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred ee----------EEEeCCCCCc----eEEeccCC-----CcEEEeechhccc------CceeccCCCcceEEEEeCCCC
Confidence 55 9999998853 99999999 9999999998543 223345788899999999974
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-24 Score=152.93 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=149.4
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.|..-|.+++|+.|.++|++|+.+..+||||++.+. .+...+.+|.+.|..+.|... .+.++++..|++||+||
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~----App~E~~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----APPKEISGHTGGIRTVLWCHE--DKCILSSADDKTVRLWD 171 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCC----CCchhhcCCCCcceeEEEecc--CceEEeeccCCceEEEE
Confidence 466789999999999999999999999999998653 345677899999999999988 78888989999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
.+++ ..++.+.- ...|.++.+++ +|.+|.++. .+.|++||... +.++..+. .
T Consensus 172 ~rTg-------t~v~sL~~-~s~VtSlEvs~--dG~ilTia~-gssV~Fwdaks------f~~lKs~k-----------~ 223 (334)
T KOG0278|consen 172 HRTG-------TEVQSLEF-NSPVTSLEVSQ--DGRILTIAY-GSSVKFWDAKS------FGLLKSYK-----------M 223 (334)
T ss_pred eccC-------cEEEEEec-CCCCcceeecc--CCCEEEEec-CceeEEecccc------ccceeecc-----------C
Confidence 9987 77777764 47899999998 999665554 56899999987 55554432 3
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.|+|.+.+++|+.. .+++|+.| ..++.||+.++...-.. ..+|-++|.+|.|+|||-
T Consensus 224 P~nV~SASL~P~k~-----~fVaGged-----~~~~kfDy~TgeEi~~~------nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 224 PCNVESASLHPKKE-----FFVAGGED-----FKVYKFDYNTGEEIGSY------NKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ccccccccccCCCc-----eEEecCcc-----eEEEEEeccCCceeeec------ccCCCCceEEEEECCCCc
Confidence 46666889999987 88999998 99999999987633111 247888999999999983
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=4.2e-23 Score=153.57 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=145.2
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+..|.+.|.+++.+|+.++++||+.|....||++. ++..+..+.+|+..|.++.|+.+ |.+|++|+.+|.|+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~-----~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS-----TGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVL 131 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc-----CCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence 477899999999999999999999999999999998 56678888999999999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
||...++ .....+......+.=+.|+| .+.+|++|+.||.|-+|.+.. ....+.+.+|..++.
T Consensus 132 v~~~stg-------~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~------~~~~kv~~Gh~~~ct-- 194 (399)
T KOG0296|consen 132 VFKVSTG-------GEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPS------QALCKVMSGHNSPCT-- 194 (399)
T ss_pred EEEcccC-------ceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCC------cceeeEecCCCCCcc--
Confidence 9999887 44555555556777899999 999999999999999999976 355566677766555
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
+-.|.|++. .++++..| ++|++|++.+++..
T Consensus 195 --------~G~f~pdGK-----r~~tgy~d-----gti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 195 --------CGEFIPDGK-----RILTGYDD-----GTIIVWNPKTGQPL 225 (399)
T ss_pred --------cccccCCCc-----eEEEEecC-----ceEEEEecCCCcee
Confidence 778999988 89999998 99999999887543
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=156.33 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=150.8
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+..|+++|+.+..+|.|.||++++.|++.-+.|+. ++..+..... ..-.+++.+|+|+ |.+|.+|..|+.|
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-----~g~~lt~vs~~~s~v~~ts~~fHpD--gLifgtgt~d~~v 371 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-----SGSQLTVVSDETSDVEYTSAAFHPD--GLIFGTGTPDGVV 371 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEcc-----CCcEEEEEeeccccceeEEeeEcCC--ceEEeccCCCceE
Confidence 56799999999999999999999999999999998 4455544432 2345899999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++||+..+ ..+..|.+|+++|..++|+- ||.+|++++.|+.|++||+|... ...++......
T Consensus 372 kiwdlks~-------~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~--- 433 (506)
T KOG0289|consen 372 KIWDLKSQ-------TNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKK--- 433 (506)
T ss_pred EEEEcCCc-------cccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhc------ccceeeccccc---
Confidence 99999887 67889999999999999987 99999999999999999999843 33333322110
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
.+++++|++.+. +|+.++. .|+||.+......|.....+. .|++..+.+.|..
T Consensus 434 ------~v~s~~fD~SGt-----~L~~~g~-------~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 434 ------EVNSLSFDQSGT-----YLGIAGS-------DLQVYICKKKTKSWTEIKELA---DHSGLSTGVRFGE 486 (506)
T ss_pred ------cceeEEEcCCCC-----eEEeecc-------eeEEEEEecccccceeeehhh---hcccccceeeecc
Confidence 123899999998 8988874 488888877777788877665 4666788888754
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=4.5e-23 Score=156.58 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=155.8
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+.+|...|+.+.|+++...+++++.|..|+||..... ........|+++|+.+...|. |.||++++.|+..
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-----s~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w 327 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-----SEPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTW 327 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----cCccccccccccceeeeeccC--CcEEEEecCCceE
Confidence 457889999999999999999999999999999998733 345566789999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
...|++.+ ..+..... ..-.+++.+|+| +|.+|.+|..||.|+|||+.. ......|.+|..+|
T Consensus 328 ~Fsd~~~g-------~~lt~vs~~~s~v~~ts~~fHp--DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 328 AFSDISSG-------SQLTVVSDETSDVEYTSAAFHP--DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPV 392 (506)
T ss_pred EEEEccCC-------cEEEEEeeccccceeEEeeEcC--CceEEeccCCCceEEEEEcCC------ccccccCCCCCCce
Confidence 99999876 55544443 334589999999 999999999999999999998 45667778888888
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. +++|+.+|- +|+++..| +.|++||++..... ..+...+. ..|.+++|.+.|.
T Consensus 393 k----------~i~FsENGY-----~Lat~add-----~~V~lwDLRKl~n~----kt~~l~~~--~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 393 K----------AISFSENGY-----WLATAADD-----GSVKLWDLRKLKNF----KTIQLDEK--KEVNSLSFDQSGT 445 (506)
T ss_pred e----------EEEeccCce-----EEEEEecC-----CeEEEEEehhhccc----ceeecccc--ccceeEEEcCCCC
Confidence 8 999999986 89999998 99999999875422 22222221 1689999998874
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.7e-23 Score=149.67 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=106.9
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+..|.+.|++++.+ +.++|+|+.|-+|+|||+. ....+..+-.|.+.|+++.|.++.....|++|+.||.|.+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~-----k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMR-----KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEecc-----chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 45689999999975 8999999999999999998 4456777778999999999999833348999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
|+. ..|.++..++.|...|+.++++| .+++-++.+.|+.+++||+-.
T Consensus 112 w~~-------~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 112 WRV-------GSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred EEc-------CCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeeehhhc
Confidence 998 35799999999999999999999 999999999999999999864
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-23 Score=164.07 Aligned_cols=181 Identities=19% Similarity=0.346 Sum_probs=151.4
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
++.|+++.|+++|++||+|..+|.|.|||.. +.+.+..+.+ |...|-+++|+ +..+.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-----~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-----EQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehh-----hccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEE
Confidence 6789999999999999999999999999998 5567788888 99999999995 467889999999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
+... .....+.+|...|..++|++ ++.++|+|+.|+.+.|||... .++...+..|...|.
T Consensus 288 R~~~------~~~~~~~~H~qeVCgLkws~--d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVK------ 347 (484)
T KOG0305|consen 288 RISQ------HVVSTLQGHRQEVCGLKWSP--DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVK------ 347 (484)
T ss_pred ecch------hhhhhhhcccceeeeeEECC--CCCeeccCCCccceEeccCCC------ccccEEEeccceeee------
Confidence 8763 22224788999999999999 999999999999999999966 466777888888888
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+++|+|-... +||+|+. .| +.|++||..++...... .-.+.|..|.|+|..
T Consensus 348 ----A~awcP~q~~----lLAsGGGs~D----~~i~fwn~~~g~~i~~v--------dtgsQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 348 ----ALAWCPWQSG----LLATGGGSAD----RCIKFWNTNTGARIDSV--------DTGSQVCSLIWSKKY 399 (484)
T ss_pred ----EeeeCCCccC----ceEEcCCCcc----cEEEEEEcCCCcEeccc--------ccCCceeeEEEcCCC
Confidence 9999998764 8888862 23 99999999876533222 244589999999864
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=7.3e-23 Score=164.77 Aligned_cols=192 Identities=21% Similarity=0.193 Sum_probs=159.3
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC--CcEEEE------eEeeecCccEEEEEEcCCCCCCEEE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS--SSFTCN------LKTKVHAGAILKVVWVPPEFGDAVA 74 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~ 74 (240)
..++.|+++|.+++.+||++.++||+.|.+|++||..-... ++.+.. .+++ -+..|.++.+||+ +.+|+
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~La 524 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLLA 524 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEEE
Confidence 45778999999999999999999999999999999752111 121111 2222 3567999999999 99999
Q ss_pred EEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295 75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 75 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
.+-.|.+|++|-+.+. +....+-+|.-+|.++..+| ++..+++|+.|..|+||-+.= +.|...+-
T Consensus 525 VsLLdnTVkVyflDtl-------KFflsLYGHkLPV~smDIS~--DSklivTgSADKnVKiWGLdF------GDCHKS~f 589 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTL-------KFFLSLYGHKLPVLSMDISP--DSKLIVTGSADKNVKIWGLDF------GDCHKSFF 589 (888)
T ss_pred EEeccCeEEEEEecce-------eeeeeecccccceeEEeccC--CcCeEEeccCCCceEEecccc------chhhhhhh
Confidence 9999999999999876 77888889999999999999 999999999999999998875 67777888
Q ss_pred cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
.|...|. +|.|.|... ++.+++-| +.|+-||...-. ....+. +|...|++++-
T Consensus 590 AHdDSvm----------~V~F~P~~~-----~FFt~gKD-----~kvKqWDg~kFe----~iq~L~---~H~~ev~cLav 642 (888)
T KOG0306|consen 590 AHDDSVM----------SVQFLPKTH-----LFFTCGKD-----GKVKQWDGEKFE----EIQKLD---GHHSEVWCLAV 642 (888)
T ss_pred cccCcee----------EEEEcccce-----eEEEecCc-----ceEEeechhhhh----hheeec---cchheeeeeEE
Confidence 8888777 999999776 89999999 999999976532 333333 68889999999
Q ss_pred ecCCC
Q 026295 235 ALNIG 239 (240)
Q Consensus 235 sp~~~ 239 (240)
+|+|+
T Consensus 643 ~~~G~ 647 (888)
T KOG0306|consen 643 SPNGS 647 (888)
T ss_pred cCCCC
Confidence 99984
No 81
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.3e-21 Score=160.14 Aligned_cols=187 Identities=10% Similarity=0.172 Sum_probs=135.5
Q ss_pred hcccccceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+..|...|.+++|+|++.. |++++.|++|+|||+. +.+.+..+. |...|.+++|+|+ |.+|++++.|+.|+
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-----tg~~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~Ir 192 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-----NEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMH 192 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-----CCcEEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEE
Confidence 5679999999999999875 5799999999999998 444555554 5678999999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeE-----EEeecCCCcEEEEEeCCC----cEEEEEecCcccccceeEEeeee
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDV-----QFGVSSTSLKLVAAYSDG----HVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~l~~~~~dg----~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
|||++.+ ..+..+.+|...+... .|++ ++.++++++.|+ +|+|||++.. ..++..+.
T Consensus 193 IwD~Rsg-------~~i~tl~gH~g~~~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~-----~~pl~~~~ 258 (568)
T PTZ00420 193 IIDPRKQ-------EIASSFHIHDGGKNTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNT-----TSALVTMS 258 (568)
T ss_pred EEECCCC-------cEEEEEecccCCceeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCC-----CCceEEEE
Confidence 9999876 7778888887654333 3446 778888888774 7999999852 12222221
Q ss_pred --cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295 155 --NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV 232 (240)
Q Consensus 155 --~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v 232 (240)
.....+ ...|.++. +.++++|..| +.|++|++..+. ...+.... +..++..+
T Consensus 259 ld~~~~~L-----------~p~~D~~t----g~l~lsGkGD-----~tIr~~e~~~~~-----~~~l~~~~-s~~p~~g~ 312 (568)
T PTZ00420 259 IDNASAPL-----------IPHYDEST----GLIYLIGKGD-----GNCRYYQHSLGS-----IRKVNEYK-SCSPFRSF 312 (568)
T ss_pred ecCCccce-----------EEeeeCCC----CCEEEEEECC-----CeEEEEEccCCc-----EEeecccc-cCCCccce
Confidence 111111 12355543 2378888888 999999997653 22222222 66789999
Q ss_pred EEecCCC
Q 026295 233 AWALNIG 239 (240)
Q Consensus 233 ~~sp~~~ 239 (240)
+|.|.-+
T Consensus 313 ~f~Pkr~ 319 (568)
T PTZ00420 313 GFLPKQI 319 (568)
T ss_pred EEccccc
Confidence 9999643
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=5.8e-23 Score=159.14 Aligned_cols=209 Identities=11% Similarity=0.128 Sum_probs=143.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.|..|...|.++++.|.|-+|++|+.|.+|++||+.+.... .+....+. .....|.+++|++. |.+|++.+.....
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqa 238 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-MRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQA 238 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-chhhhccCcccccccceeeecCC--CCeEEEEecCcce
Confidence 46778889999999999999999999999999999865321 12222222 23457999999999 8888888778889
Q ss_pred EEEEeeeccCC-----CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 83 LLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 83 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
+|+|-....-. -.+..-+...++|...+++.+|+|. +...+++++.||++++||+.... ...+.|...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k-----~q~qVik~k- 311 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTK-----SQLQVIKTK- 311 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCch-----hheeEEeec-
Confidence 99986532000 0011112334578899999999995 33458999999999999998631 112222211
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC--ceEEEEEe
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD--EVYAVAWA 235 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s 235 (240)
+.+.....+..++|+|++. +||+|..| |.|.+|+.......... .....|.. .|++|+||
T Consensus 312 ----~~~g~Rv~~tsC~~nrdg~-----~iAagc~D-----GSIQ~W~~~~~~v~p~~----~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 312 ----PAGGKRVPVTSCAWNRDGK-----LIAAGCLD-----GSIQIWDKGSRTVRPVM----KVKDAHLPGQDITSISFS 373 (641)
T ss_pred ----cCCCcccCceeeecCCCcc-----hhhhcccC-----CceeeeecCCcccccce----EeeeccCCCCceeEEEec
Confidence 1112223345888999998 78888888 99999998543222111 12224655 89999999
Q ss_pred cCCCC
Q 026295 236 LNIGR 240 (240)
Q Consensus 236 p~~~~ 240 (240)
+||.+
T Consensus 374 ~dg~~ 378 (641)
T KOG0772|consen 374 YDGNY 378 (641)
T ss_pred cccch
Confidence 99863
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=8e-24 Score=155.85 Aligned_cols=165 Identities=19% Similarity=0.242 Sum_probs=143.9
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+..++++|.|+.|+.|...||+|+.||.|+||.+. ++.|++.|. .|+..|+++.|+.+ +..+++++.|.+++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~-----tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE-----TGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVR 331 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEe-----cchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEE
Confidence 55688899999999999999999999999999999 889999987 89999999999999 89999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+.-+..+ +++..|++|.+.|+...|.+ +|..+++++.||+|++|+..+ .++..+++......
T Consensus 332 iHGlKSG-------K~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~~~~d~--- 393 (508)
T KOG0275|consen 332 IHGLKSG-------KCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKT------TECLSTFKPLGTDY--- 393 (508)
T ss_pred Eeccccc-------hhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcc------hhhhhhccCCCCcc---
Confidence 9999888 99999999999999999988 999999999999999999988 57777765543222
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.++++..-|...+ .++++... ++|.|-++..
T Consensus 394 -----~vnsv~~~PKnpe----h~iVCNrs-----ntv~imn~qG 424 (508)
T KOG0275|consen 394 -----PVNSVILLPKNPE----HFIVCNRS-----NTVYIMNMQG 424 (508)
T ss_pred -----cceeEEEcCCCCc----eEEEEcCC-----CeEEEEeccc
Confidence 2457777787753 67778777 8899888753
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=164.31 Aligned_cols=172 Identities=13% Similarity=0.197 Sum_probs=133.4
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|.+.|..+.||.++ +|++++.|.+||||++. .-.++..|. |...|+||+|+|. +.++|++|+.|+.|+
T Consensus 364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-----~~~CL~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-----RKECLKVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVR 435 (712)
T ss_pred hhhccchhheecccccCC-eeEeccccccEEeecCC-----CcceeeEEe-cCCeeEEEEeccc-CCCcEeecccccceE
Confidence 377899999999999866 89999999999999998 557887775 9999999999997 578999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
||++.. ..+.....-..-|++++|.| +|++.++|+.+|.+++|+... .++...+..+...-..
T Consensus 436 iWsI~d--------~~Vv~W~Dl~~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk- 498 (712)
T KOG0283|consen 436 LWSISD--------KKVVDWNDLRDLITAVCYSP--DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKK- 498 (712)
T ss_pred EeecCc--------CeeEeehhhhhhheeEEecc--CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCcc-
Confidence 999976 34444444558899999999 999999999999999999986 3444333322110000
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
-.+. .|+.+.|.|.... .+++.+.| ..|||||.+...
T Consensus 499 ~~~~-rITG~Q~~p~~~~----~vLVTSnD-----SrIRI~d~~~~~ 535 (712)
T KOG0283|consen 499 KQGK-RITGLQFFPGDPD----EVLVTSND-----SRIRIYDGRDKD 535 (712)
T ss_pred ccCc-eeeeeEecCCCCC----eEEEecCC-----CceEEEeccchh
Confidence 0011 3558999987752 56677777 999999996543
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.9e-23 Score=161.44 Aligned_cols=188 Identities=19% Similarity=0.280 Sum_probs=149.1
Q ss_pred hhcc-cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVAT-LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~-h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+.. |...|-+++|+ +..+.+|+.|+.|..+|+.... .....+.+|...|+.++|+++ +.++++|+.|+.+
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~----~~~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ----HVVSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVV 325 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch----hhhhhhhcccceeeeeEECCC--CCeeccCCCccce
Confidence 3555 88899999998 7789999999999999998431 122247899999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.|||.... .+...+..|...|..++|+|...+. ||+|+ .|++|++||..+ +..+..+... ..|
T Consensus 326 ~Iwd~~~~-------~p~~~~~~H~aAVKA~awcP~q~~l-LAsGGGs~D~~i~fwn~~~------g~~i~~vdtg-sQV 390 (484)
T KOG0305|consen 326 FIWDGLSP-------EPKFTFTEHTAAVKALAWCPWQSGL-LATGGGSADRCIKFWNTNT------GARIDSVDTG-SQV 390 (484)
T ss_pred EeccCCCc-------cccEEEeccceeeeEeeeCCCccCc-eEEcCCCcccEEEEEEcCC------CcEecccccC-Cce
Confidence 99999655 7888999999999999999975555 88765 799999999987 5655554322 223
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. .+.|++...+ ++.+-+..+ +.|.||++.+. .....+. +|...|..+++|||+.
T Consensus 391 c----------sL~Wsk~~kE----i~sthG~s~----n~i~lw~~ps~----~~~~~l~---gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 391 C----------SLIWSKKYKE----LLSTHGYSE----NQITLWKYPSM----KLVAELL---GHTSRVLYLALSPDGE 444 (484)
T ss_pred e----------eEEEcCCCCE----EEEecCCCC----CcEEEEecccc----ceeeeec---CCcceeEEEEECCCCC
Confidence 3 8999999863 555444433 89999999873 2334444 6888999999999973
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=8.5e-23 Score=152.69 Aligned_cols=165 Identities=18% Similarity=0.249 Sum_probs=141.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|.++|.++.|++ ...+.+++.|.+|+.||+. ++.++.++.+ ....+++.++|. ..+|++|+.|..++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle-----tg~~~~~~~~-~ksl~~i~~~~~--~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE-----TGGLKSTLTT-NKSLNCISYSPL--SKLLASGSSDRHIR 325 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEee-----cccceeeeec-CcceeEeecccc--cceeeecCCCCcee
Confidence 3788999999999998 6689999999999999999 6677777765 567999999998 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||.+.+++. ...+++.+|...|.++.|+|. +...|++++.|+++++||+|+. ...+..+..|...+-
T Consensus 326 l~DPR~~~gs----~v~~s~~gH~nwVssvkwsp~-~~~~~~S~S~D~t~klWDvRS~-----k~plydI~~h~DKvl-- 393 (423)
T KOG0313|consen 326 LWDPRTGDGS----VVSQSLIGHKNWVSSVKWSPT-NEFQLVSGSYDNTVKLWDVRST-----KAPLYDIAGHNDKVL-- 393 (423)
T ss_pred ecCCCCCCCc----eeEEeeecchhhhhheecCCC-CceEEEEEecCCeEEEEEeccC-----CCcceeeccCCceEE--
Confidence 9999988653 567788999999999999994 3446899999999999999984 446667778877776
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
++.|+... ++++|+.| ++|+|+....
T Consensus 394 --------~vdW~~~~------~IvSGGaD-----~~l~i~~~~~ 419 (423)
T KOG0313|consen 394 --------SVDWNEGG------LIVSGGAD-----NKLRIFKGSP 419 (423)
T ss_pred --------EEeccCCc------eEEeccCc-----ceEEEecccc
Confidence 89998776 69999999 9999998653
No 87
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=9.3e-23 Score=152.45 Aligned_cols=199 Identities=18% Similarity=0.315 Sum_probs=149.7
Q ss_pred hhcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCC-----------CCcEEEEeEeeecCccEEEEEEcCCCCC
Q 026295 4 AVATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPS-----------SSSFTCNLKTKVHAGAILKVVWVPPEFG 70 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 70 (240)
+..+|.+.++.++-++-+ .+.|+-+..|.|+||++.... ....+++.++.+|.+.=+.|+|||-..|
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 455688888888888755 577888899999999985321 0144678888999999999999997444
Q ss_pred CEEEEEecCCeEEEEEeeeccCCCcccEE-EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295 71 DAVACICSDGSLLLWEEIVEDAQPLQWKL-CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL 149 (240)
Q Consensus 71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 149 (240)
. +++|.--+.|++|...++ .|+. ...|.+|+..|-.++|||..++ .|++|+.||+|+|||+|.... ..+
T Consensus 226 ~-LlsGDc~~~I~lw~~~~g-----~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~---~~~ 295 (440)
T KOG0302|consen 226 R-LLSGDCVKGIHLWEPSTG-----SWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPK---KAA 295 (440)
T ss_pred c-cccCccccceEeeeeccC-----ceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCc---cce
Confidence 4 677777778999998764 4543 3456679999999999997555 499999999999999997311 122
Q ss_pred EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295 150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV 229 (240)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 229 (240)
+.. +.|...| |.++|+-... +||+|+.| |+++|||++.-+.. +++..+. .|..+|
T Consensus 296 ~~~-kAh~sDV----------NVISWnr~~~-----lLasG~Dd-----Gt~~iwDLR~~~~~-~pVA~fk---~Hk~pI 350 (440)
T KOG0302|consen 296 VST-KAHNSDV----------NVISWNRREP-----LLASGGDD-----GTLSIWDLRQFKSG-QPVATFK---YHKAPI 350 (440)
T ss_pred eEe-eccCCce----------eeEEccCCcc-----eeeecCCC-----ceEEEEEhhhccCC-CcceeEE---eccCCe
Confidence 222 4454444 4999998876 89999988 99999999875544 4444444 577799
Q ss_pred EEEEEecC
Q 026295 230 YAVAWALN 237 (240)
Q Consensus 230 ~~v~~sp~ 237 (240)
++|.|+|.
T Consensus 351 tsieW~p~ 358 (440)
T KOG0302|consen 351 TSIEWHPH 358 (440)
T ss_pred eEEEeccc
Confidence 99999985
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-23 Score=155.86 Aligned_cols=193 Identities=19% Similarity=0.275 Sum_probs=146.5
Q ss_pred hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+. ...++.+++.|.+.|..|++.. ..+++++.|.+|
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-----qR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtv 131 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-----QRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTV 131 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehh-----hhhhhheeecccCceeeEEecc----cceEEecCCcce
Confidence 477899999999999987 899999999999999999 6678999999999999999954 347788889999
Q ss_pred EEEEeeeccC--------------------------CCccc-----EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295 83 LLWEEIVEDA--------------------------QPLQW-----KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG 131 (240)
Q Consensus 83 ~iwd~~~~~~--------------------------~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 131 (240)
+.|-+..... +-.-| .++..+.-....|.++.|+|.+. .+|+++..|+
T Consensus 132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-sILas~~sDr 210 (433)
T KOG0268|consen 132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-SILASCASDR 210 (433)
T ss_pred eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcc-hheeeeccCC
Confidence 9997432100 00111 23444444556788999988533 3588888999
Q ss_pred cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
.|.+||+++..++. +.+..+.. |.++|+|... .|++|..| ..++.||++.
T Consensus 211 sIvLyD~R~~~Pl~--KVi~~mRT---------------N~IswnPeaf-----nF~~a~ED-----~nlY~~DmR~--- 260 (433)
T KOG0268|consen 211 SIVLYDLRQASPLK--KVILTMRT---------------NTICWNPEAF-----NFVAANED-----HNLYTYDMRN--- 260 (433)
T ss_pred ceEEEecccCCccc--eeeeeccc---------------cceecCcccc-----ceeecccc-----ccceehhhhh---
Confidence 99999999864442 22222211 3899999665 68888888 9999999876
Q ss_pred CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 212 RWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 212 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+...+..+.+|.++|.+|+|||.|.
T Consensus 261 ---l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 261 ---LSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ---hcccchhhcccceeEEEeccCCCcc
Confidence 3344566779999999999999873
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=152.85 Aligned_cols=196 Identities=14% Similarity=0.191 Sum_probs=146.4
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
|.+-.+.|+.+.|.++++.+++++.|+.+++|++. ..+...++.+|++.|+++.|... ...+++++.|.+|++
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-----~~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-----SLRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKL 287 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeecc-----chhhhhhhcccccceeeehhhcc--ccceeeccccchhhh
Confidence 45555679999999999999999999999999998 67888999999999999998665 344667777777777
Q ss_pred EEeeeccCC--------------------------------CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCc
Q 026295 85 WEEIVEDAQ--------------------------------PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH 132 (240)
Q Consensus 85 wd~~~~~~~--------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 132 (240)
||+...--. ...-.+......+ +.|+++..++ ++..+++++.|.+
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~--~g~~lLsssRDdt 364 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSM--DGLELLSSSRDDT 364 (459)
T ss_pred hhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeecc--CCeEEeeecCCCc
Confidence 765432000 0000233334333 5889999988 9999999999999
Q ss_pred EEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 133 VKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
+.+.|+++ .+..+.+...... ..+..+.+.|+|++. |+|+|++| |.|+||++.+++.+
T Consensus 365 l~viDlRt------~eI~~~~sA~g~k------~asDwtrvvfSpd~~-----YvaAGS~d-----gsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 365 LKVIDLRT------KEIRQTFSAEGFK------CASDWTRVVFSPDGS-----YVAAGSAD-----GSVYIWSVFTGKLE 422 (459)
T ss_pred eeeeeccc------ccEEEEeeccccc------cccccceeEECCCCc-----eeeeccCC-----CcEEEEEccCceEE
Confidence 99999998 5666665433211 122345889999998 99999999 99999999998755
Q ss_pred cceeEeeecCCCCCC-ceEEEEEecCC
Q 026295 213 WLPVAELALPEDRSD-EVYAVAWALNI 238 (240)
Q Consensus 213 ~~~~~~~~~~~~h~~-~v~~v~~sp~~ 238 (240)
..+ .. .++. .|++++|+|.|
T Consensus 423 ~~l----~~--s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 423 KVL----SL--STSNAAITSLSWNPSG 443 (459)
T ss_pred EEe----cc--CCCCcceEEEEEcCCC
Confidence 433 22 2333 79999999976
No 90
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=4.5e-24 Score=158.29 Aligned_cols=170 Identities=17% Similarity=0.314 Sum_probs=128.9
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
..|.|+.+ |...+++|..|.+|+|||.. ...++..+.+|++.|.++.| + ...+++|+.|.+|++||.++
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n-----~~~c~~~L~GHtGSVLCLqy--d--~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKN-----SLECLKILTGHTGSVLCLQY--D--ERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccc-----cHHHHHhhhcCCCcEEeeec--c--ceEEEecCCCceEEEEeccC
Confidence 46888875 46679999999999999998 77899999999999999999 2 46899999999999999987
Q ss_pred ccCCCcccEEEEEee-------------------------------------------eccccEEeEEEeecCCCcEEEE
Q 026295 90 EDAQPLQWKLCKSFE-------------------------------------------STSTQVLDVQFGVSSTSLKLVA 126 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~-------------------------------------------~~~~~v~~~~~~~~~~~~~l~~ 126 (240)
+ +++.++- +|...|..+.| +.+++++
T Consensus 267 g-------e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf----d~kyIVs 335 (499)
T KOG0281|consen 267 G-------EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVS 335 (499)
T ss_pred C-------chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc----ccceEEE
Confidence 7 3333333 35555666666 3446777
Q ss_pred EeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 127 AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 127 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
++.|.+|++|++.+ .+.+..+.+|...|. |+.+. +.++++|++| .+|++||.
T Consensus 336 ASgDRTikvW~~st------~efvRtl~gHkRGIA----------ClQYr-------~rlvVSGSSD-----ntIRlwdi 387 (499)
T KOG0281|consen 336 ASGDRTIKVWSTST------CEFVRTLNGHKRGIA----------CLQYR-------DRLVVSGSSD-----NTIRLWDI 387 (499)
T ss_pred ecCCceEEEEeccc------eeeehhhhcccccce----------ehhcc-------CeEEEecCCC-----ceEEEEec
Confidence 77777777777666 677777777766555 55442 3378888888 99999999
Q ss_pred ecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 207 DEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
..+.+...+ +||++-|+++.|..
T Consensus 388 ~~G~cLRvL-------eGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 388 ECGACLRVL-------EGHEELVRCIRFDN 410 (499)
T ss_pred cccHHHHHH-------hchHHhhhheeecC
Confidence 988755433 36777999998864
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.6e-22 Score=150.27 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=152.5
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.|...+.+++.++||++||+|+.|..|.||+.. +.+.+..+++|.+.|.+++|-.. ...+++++.|++|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~-----t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD-----TLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCc-----ccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEe
Confidence 677889999999999999999999999999999 78889999999999999999666 67788999999999998
Q ss_pred eeecc------------------------------CCCcccEE----EEEeeeccccEEeEEEeecCCCcEEEEEeCCCc
Q 026295 87 EIVED------------------------------AQPLQWKL----CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH 132 (240)
Q Consensus 87 ~~~~~------------------------------~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 132 (240)
+.... ....-|+. ...+.++...+.+++|-. ...+++|+.||.
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In---~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN---DEHFVSGSDNGS 349 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec---ccceeeccCCce
Confidence 65320 00111221 122445667888999864 456999999999
Q ss_pred EEEEEecCcccccceeEEeeeecccceeec--cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 133 VKVYELLDPLILKNWQLQAEFQNAIDSVTM--FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|.+|++.+ ..++............ .-+...-+++++-.|... ++|+|+.+ |.|++|....+.
T Consensus 350 IaLWs~~K------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-----L~asGS~~-----G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 350 IALWSLLK------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-----LLASGSWS-----GCVRLWKIEDGL 413 (479)
T ss_pred EEEeeecc------cCceeEeeccccccCCccccccccceeeeEecccCc-----eEEecCCC-----CceEEEEecCCc
Confidence 99999976 3333333221111110 000112445888889887 99999999 999999999987
Q ss_pred CCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 211 NRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
....+..+++ ..| .|++|+|++++-
T Consensus 414 r~i~~l~~ls-~~G---fVNsl~f~~sgk 438 (479)
T KOG0299|consen 414 RAINLLYSLS-LVG---FVNSLAFSNSGK 438 (479)
T ss_pred cccceeeecc-ccc---EEEEEEEccCCC
Confidence 7777777775 334 899999999974
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=4e-22 Score=162.54 Aligned_cols=178 Identities=17% Similarity=0.195 Sum_probs=153.3
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+.+|.+.|.+++|..-+.+|++|+.|.+++|||.. ++++...+.+|.+.|.++... ..++++|+.|.+|+
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-----sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-----TGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVK 314 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-----CCcEEEEecCCCceEEEEEcc----CceEeeccCCceEE
Confidence 478999999999998878999999999999999988 789999999999999999873 45677889999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+|+++++ .++..+.+|...|.++.. ++.++++|+.|++|++||+.+ +++...+.+|...|.
T Consensus 315 VW~v~n~-------~~l~l~~~h~~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~-- 375 (537)
T KOG0274|consen 315 VWDVTNG-------ACLNLLRGHTGPVNCVQL----DEPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVY-- 375 (537)
T ss_pred EEeccCc-------ceEEEeccccccEEEEEe----cCCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEE--
Confidence 9999987 889999999999999998 577899999999999999997 899999999999888
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-CCCcceeEeeecCCCCCCceEEEEEe
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
++.+.+. . .+++|+.| ++|++||+++. ++...+ . +|.+-|..+.+.
T Consensus 376 --------sl~~~~~-~-----~~~Sgs~D-----~~IkvWdl~~~~~c~~tl----~---~h~~~v~~l~~~ 422 (537)
T KOG0274|consen 376 --------SLIVDSE-N-----RLLSGSLD-----TTIKVWDLRTKRKCIHTL----Q---GHTSLVSSLLLR 422 (537)
T ss_pred --------EEEecCc-c-----eEEeeeec-----cceEeecCCchhhhhhhh----c---CCcccccccccc
Confidence 8877765 3 79999999 99999999987 433322 2 566666665553
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=7.1e-22 Score=143.69 Aligned_cols=200 Identities=17% Similarity=0.306 Sum_probs=152.5
Q ss_pred hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcE-----EEE---eEeeecCccEEEEEEcCCCCCCEE
Q 026295 5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSF-----TCN---LKTKVHAGAILKVVWVPPEFGDAV 73 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~-----~~~---~~~~~h~~~v~~~~~~~~~~~~~l 73 (240)
...|.+.|+++.+.+ .|+++++|+.||.|.|||++.... ... .++ ..-.+|.-.|.++.|-|- +.-+|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence 456999999999998 789999999999999999975431 011 111 011267778999999887 24578
Q ss_pred EEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295 74 ACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 152 (240)
Q Consensus 74 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 152 (240)
.+++.|.++++||..+. +....|+- +..|.+-+++|... ..++|+|..+-+|++.|+.+ +...+.
T Consensus 118 tssSFDhtlKVWDtnTl-------Q~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S------Gs~sH~ 183 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL-------QEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS------GSFSHT 183 (397)
T ss_pred ecccccceEEEeecccc-------eeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC------Ccceee
Confidence 88999999999999876 55555553 46788888888544 34678888999999999998 788899
Q ss_pred eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc--------ceeEeeecCCC
Q 026295 153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW--------LPVAELALPED 224 (240)
Q Consensus 153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~--------~~~~~~~~~~~ 224 (240)
+.+|...|- +|.|+|... .+|++|+.| |.|++||++....-+ +....++....
T Consensus 184 LsGHr~~vl----------aV~Wsp~~e----~vLatgsaD-----g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 184 LSGHRDGVL----------AVEWSPSSE----WVLATGSAD-----GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred eccccCceE----------EEEeccCce----eEEEecCCC-----ceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 999988887 999999985 489999999 999999997652111 11111223345
Q ss_pred CCCceEEEEEecCC
Q 026295 225 RSDEVYAVAWALNI 238 (240)
Q Consensus 225 h~~~v~~v~~sp~~ 238 (240)
|.+.|+.++|..|+
T Consensus 245 h~gkvngla~tSd~ 258 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDA 258 (397)
T ss_pred ccceeeeeeecccc
Confidence 88899999999886
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-22 Score=146.10 Aligned_cols=210 Identities=16% Similarity=0.187 Sum_probs=144.1
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC---------------------------------C-----
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS---------------------------------S----- 44 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~---------------------------------~----- 44 (240)
..|++|.+.|++++|+.+|++|||++.|+.|+||++..-.. +
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 34789999999999999999999999999999999752100 0
Q ss_pred ---------------------------------------------------------cEEEEeEeeecCccEEEEEEcCC
Q 026295 45 ---------------------------------------------------------SFTCNLKTKVHAGAILKVVWVPP 67 (240)
Q Consensus 45 ---------------------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~ 67 (240)
.++.+.++......-+..+.+|+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~ 239 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPD 239 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCC
Confidence 00000001111111234567788
Q ss_pred CCCCEEEEEecCCeEEEEEeeec-cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc
Q 026295 68 EFGDAVACICSDGSLLLWEEIVE-DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN 146 (240)
Q Consensus 68 ~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 146 (240)
|+++++++.-.-|++|.+--. ++...+...+..+++|...|..++|+| +...+++++.||++++||..-....
T Consensus 240 --GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvSkDG~wriwdtdVrY~~-- 313 (420)
T KOG2096|consen 240 --GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVSKDGKWRIWDTDVRYEA-- 313 (420)
T ss_pred --CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC--CcceeEEEecCCcEEEeeccceEec--
Confidence 888888888888999986432 333344456778889999999999999 9999999999999999998642111
Q ss_pred eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCC
Q 026295 147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRS 226 (240)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~ 226 (240)
.+-...++....+....+...| .++.+|.+. .||.++. ..+++|..++++..-.+ + .-|+
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~---RL~lsP~g~-----~lA~s~g------s~l~~~~se~g~~~~~~-e-----~~h~ 373 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPV---RLELSPSGD-----SLAVSFG------SDLKVFASEDGKDYPEL-E-----DIHS 373 (420)
T ss_pred CCCchHhhcCCcchhhcCCCce---EEEeCCCCc-----EEEeecC------CceEEEEcccCccchhH-H-----Hhhc
Confidence 1111122222223333344444 789999998 6777765 67999998876533222 1 1388
Q ss_pred CceEEEEEecCC
Q 026295 227 DEVYAVAWALNI 238 (240)
Q Consensus 227 ~~v~~v~~sp~~ 238 (240)
..|.+++|+|+|
T Consensus 374 ~~Is~is~~~~g 385 (420)
T KOG2096|consen 374 TTISSISYSSDG 385 (420)
T ss_pred CceeeEEecCCC
Confidence 899999999987
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=8.5e-23 Score=154.38 Aligned_cols=174 Identities=15% Similarity=0.255 Sum_probs=127.0
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.+++.+|..+|..+.||||.++|++|+.|..+++||.. ++.+...+. +|...+.+.+|.|+ |..+++|+.|+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-----tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr 334 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-----TGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDR 334 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCC-----cchhhhhcccCcCCCcceeEEccC--CceeEecCCCC
Confidence 46688999999999999999999999999999999998 666655554 34577999999999 99999999999
Q ss_pred eEEEEEeeeccCCCcccEEEE--------------------------E----------eeeccccEEeEEEee-------
Q 026295 81 SLLLWEEIVEDAQPLQWKLCK--------------------------S----------FESTSTQVLDVQFGV------- 117 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~--------------------------~----------~~~~~~~v~~~~~~~------- 117 (240)
.+..||+..... ..|+-++ - +.....+|++++.|.
T Consensus 335 ~i~~wdlDgn~~--~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 335 TIIMWDLDGNIL--GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred cEEEecCCcchh--hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence 999999754311 0000000 0 000112333333322
Q ss_pred ------------------------------------cCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 118 ------------------------------------SSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 118 ------------------------------------~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
-.+..++++|+.|++|+||+..+ +.++..+.+|...+.
T Consensus 413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s------gkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS------GKLLAVLSGHSKTVN 486 (519)
T ss_pred EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC------CceeEeecCCcceee
Confidence 01235778888888888888776 677888888776554
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+|+|+|...+ +||+|+.| |+||||.....
T Consensus 487 ----------cVswNP~~p~----m~ASasDD-----gtIRIWg~~~~ 515 (519)
T KOG0293|consen 487 ----------CVSWNPADPE----MFASASDD-----GTIRIWGPSDN 515 (519)
T ss_pred ----------EEecCCCCHH----HhhccCCC-----CeEEEecCCcc
Confidence 9999999864 89999988 99999987643
No 96
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=4.4e-22 Score=158.97 Aligned_cols=206 Identities=13% Similarity=0.210 Sum_probs=161.2
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 76 (240)
++||.+|.-.|.+++.+|+|+++|++.... .|++|+.. ++.....+.+|.-.|+.|+|||+ +.+|++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-----~W~~~~~L~~HsLTVT~l~FSpd--g~~LLsv 590 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-----NWLQVQELEGHSLTVTRLAFSPD--GRYLLSV 590 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-----chhhhheecccceEEEEEEECCC--CcEEEEe
Confidence 367999999999999999999999997653 48899998 78888889999999999999999 9999999
Q ss_pred ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee--e
Q 026295 77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF--Q 154 (240)
Q Consensus 77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--~ 154 (240)
+.|.++.+|........+.+ ....+.|+..|+...|+| ++.++++++.|.+|++|....... +.+..+ .
T Consensus 591 sRDRt~sl~~~~~~~~~e~~---fa~~k~HtRIIWdcsW~p--de~~FaTaSRDK~VkVW~~~~~~d----~~i~~~a~~ 661 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEFR---FACLKAHTRIIWDCSWSP--DEKYFATASRDKKVKVWEEPDLRD----KYISRFACL 661 (764)
T ss_pred ecCceEEeeeeecccchhhh---hccccccceEEEEcccCc--ccceeEEecCCceEEEEeccCchh----hhhhhhchh
Confidence 99999999998544322222 233677999999999999 999999999999999999876311 111111 1
Q ss_pred cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-----CCCcceeEeeecCCCCCCce
Q 026295 155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-----HNRWLPVAELALPEDRSDEV 229 (240)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-----~~~~~~~~~~~~~~~h~~~v 229 (240)
....+++ +++|.|.-...+..++++|... |.|.+|..... ...+.+...+..+.+|.+.|
T Consensus 662 ~~~~aVT----------Av~~~~~~~~e~~~~vavGle~-----GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV 726 (764)
T KOG1063|consen 662 KFSLAVT----------AVAYLPVDHNEKGDVVAVGLEK-----GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV 726 (764)
T ss_pred ccCCcee----------eEEeeccccccccceEEEEecc-----cEEEEEecccccccccceeeeeccccccccChHHhh
Confidence 2233344 8899887665556688999988 99999997622 22344455566677899999
Q ss_pred EEEEEecCC
Q 026295 230 YAVAWALNI 238 (240)
Q Consensus 230 ~~v~~sp~~ 238 (240)
+-+.|+|..
T Consensus 727 ~rl~w~p~~ 735 (764)
T KOG1063|consen 727 NRLLWRPTC 735 (764)
T ss_pred heeEecccc
Confidence 999999974
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-22 Score=161.21 Aligned_cols=196 Identities=11% Similarity=0.193 Sum_probs=160.2
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEE-cCCCCCCEEEEEecCCe
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVW-VPPEFGDAVACICSDGS 81 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~d~~ 81 (240)
.+++.|.+.|+.++...+++.|+++|.|-+|++|+.... ..-+..++..|+..|.++++ .++ ..++++|+.|+.
T Consensus 67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~---~~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD---NTFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRK 141 (735)
T ss_pred hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC---cchhHhhhhcccchheeeeecccC--ceeEEecCCCcc
Confidence 457889999999999999999999999999999999743 22477888899999999999 555 789999999999
Q ss_pred EEEEEeeeccCC-CcccE--EEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 82 LLLWEEIVEDAQ-PLQWK--LCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 82 v~iwd~~~~~~~-~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
|.+||+..+... ...+. ...... ++...|.+++-++ +|..+++|+..+.+++||.++ .+.+..+.+|.
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt------~~kimkLrGHT 213 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRT------CKKIMKLRGHT 213 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC--cceEEEecCcccceEEecccc------ccceeeeeccc
Confidence 999999866320 00011 112222 6778999999988 898999999999999999998 67777888999
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..|+ .+-.++++. .++++++| |+|++||+....+..++ . -|...|+++.-+|+
T Consensus 214 dNVr----------~ll~~dDGt-----~~ls~sSD-----gtIrlWdLgqQrCl~T~----~---vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 214 DNVR----------VLLVNDDGT-----RLLSASSD-----GTIRLWDLGQQRCLATY----I---VHKEGVWALQSSPS 266 (735)
T ss_pred cceE----------EEEEcCCCC-----eEeecCCC-----ceEEeeeccccceeeeE----E---eccCceEEEeeCCC
Confidence 9988 899999998 79999999 99999999876555443 2 26668999999887
Q ss_pred C
Q 026295 238 I 238 (240)
Q Consensus 238 ~ 238 (240)
.
T Consensus 267 f 267 (735)
T KOG0308|consen 267 F 267 (735)
T ss_pred c
Confidence 4
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=4.5e-22 Score=160.28 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=150.7
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
-..++.|.|+++||||++||.+--|.+|+||-++ +.+...++.||.-||.++..+|+ +.++++|+.|..|++|
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-----tlKFflsLYGHkLPV~smDIS~D--SklivTgSADKnVKiW 577 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-----TLKFFLSLYGHKLPVLSMDISPD--SKLIVTGSADKNVKIW 577 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-----ceeeeeeecccccceeEEeccCC--cCeEEeccCCCceEEe
Confidence 3467789999999999999999999999999999 88888899999999999999999 9999999999999999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
-+.-+ .|-..+-.|...|.++.|.| ....+.+++.|+.|+-||-.. +++++.+.+|...+.
T Consensus 578 GLdFG-------DCHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWDg~k------Fe~iq~L~~H~~ev~---- 638 (888)
T KOG0306|consen 578 GLDFG-------DCHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWDGEK------FEEIQKLDGHHSEVW---- 638 (888)
T ss_pred ccccc-------hhhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeechhh------hhhheeeccchheee----
Confidence 99888 89999999999999999999 888899999999999999887 899999999998888
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
+++-.|+|. ++++++.| .+||+|....
T Consensus 639 ------cLav~~~G~-----~vvs~shD-----~sIRlwE~td 665 (888)
T KOG0306|consen 639 ------CLAVSPNGS-----FVVSSSHD-----KSIRLWERTD 665 (888)
T ss_pred ------eeEEcCCCC-----eEEeccCC-----ceeEeeeccC
Confidence 999999998 89999999 9999998654
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-20 Score=137.96 Aligned_cols=214 Identities=22% Similarity=0.353 Sum_probs=161.6
Q ss_pred hcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCC---C-CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295 5 VATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPS---S-SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~---~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
-+.|++.|..+.|.+ -|+.+|+|+.|++++||.-.... . ..|....++......|++++|.|..-|-.+++++.
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence 467999999999976 58999999999999999863211 1 16677788888889999999999877889999999
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEee-------eccccEEeEEEeecCCC-cEEEEEeCC-----CcEEEEEecCccccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQFGVSSTS-LKLVAAYSD-----GHVKVYELLDPLILK 145 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-~~l~~~~~d-----g~v~iw~~~~~~~~~ 145 (240)
||.+|||+.... .+...|....+++ .+.....|+.|+|.+-. .+|++|+.+ +.++||.... ..+
T Consensus 135 DG~lRIYEA~dp-~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~r 211 (361)
T KOG2445|consen 135 DGILRIYEAPDP-MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGR 211 (361)
T ss_pred CcEEEEEecCCc-cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--Ccc
Confidence 999999997533 1235566666665 46678889999985433 356666654 4899998764 344
Q ss_pred ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-------------CCC
Q 026295 146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-------------HNR 212 (240)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-------------~~~ 212 (240)
+|..+.++..+..+|+ +++|.|+... ...+||+|+.| | |+||++... ...
T Consensus 212 Kw~kva~L~d~~dpI~----------di~wAPn~Gr-~y~~lAvA~kD-----g-v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIR----------DISWAPNIGR-SYHLLAVATKD-----G-VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred eeeeehhcCCCCCcce----------eeeeccccCC-ceeeEEEeecC-----c-EEEEEEeeccchhhhhcccCCCCcc
Confidence 6788888888888887 9999998763 24489999998 8 999998731 111
Q ss_pred cceeEeeecCCCCCCceEEEEEecCC
Q 026295 213 WLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
...++.+..+.+|.+.|+.+.|+=.|
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeee
Confidence 12345555677899999999997544
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=6.2e-22 Score=148.08 Aligned_cols=172 Identities=18% Similarity=0.320 Sum_probs=138.3
Q ss_pred hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEE-EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTC-NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+..|.+.=..++|||-. ..|++|.--+.|++|..... .|+. ...+.+|+..|-.|+|||.. ...|++|+.||+|
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsI 282 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSI 282 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccC---ceeecCccccccccchhhhccCCcc-CceEEeeecCceE
Confidence 45677778899999932 46889988899999998753 4542 23456799999999999983 5689999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
+|||++.+.. +.....+.|.+.|+.|.|+. .-.+||+|+.||+++|||+++-. ..+++..++-|..+|.
T Consensus 283 rIWDiRs~~~-----~~~~~~kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~---~~~pVA~fk~Hk~pIt- 351 (440)
T KOG0302|consen 283 RIWDIRSGPK-----KAAVSTKAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFK---SGQPVATFKYHKAPIT- 351 (440)
T ss_pred EEEEecCCCc-----cceeEeeccCCceeeEEccC--CcceeeecCCCceEEEEEhhhcc---CCCcceeEEeccCCee-
Confidence 9999997632 23333478889999999976 55589999999999999999742 2477888888888888
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+|.|+|.... .|++++.| ..|.|||+...
T Consensus 352 ---------sieW~p~e~s----~iaasg~D-----~QitiWDlsvE 380 (440)
T KOG0302|consen 352 ---------SIEWHPHEDS----VIAASGED-----NQITIWDLSVE 380 (440)
T ss_pred ---------EEEeccccCc----eEEeccCC-----CcEEEEEeecc
Confidence 9999998753 78888888 99999999654
No 101
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=1.6e-22 Score=155.29 Aligned_cols=169 Identities=18% Similarity=0.282 Sum_probs=134.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+++.+|..+|..++|+.+|..|.+++.|+.|++||.+ +++++..+.. ...+++++|.|+. .+.|++|+.|+.|
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-----TG~~~~~f~~-~~~~~cvkf~pd~-~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-----TGQVLSRFHL-DKVPTCVKFHPDN-QNIFLVGGSDKKI 324 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-----cceEEEEEec-CCCceeeecCCCC-CcEEEEecCCCcE
Confidence 5678899999999999999999999999999999999 8899888874 5678899999982 3788999999999
Q ss_pred EEEEeeeccC------------------C------------------------------------------CcccEE---
Q 026295 83 LLWEEIVEDA------------------Q------------------------------------------PLQWKL--- 99 (240)
Q Consensus 83 ~iwd~~~~~~------------------~------------------------------------------~~~~~~--- 99 (240)
+.||+++++- . ...|..
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 9999775421 0 000000
Q ss_pred ----E--------------EEeeecc--ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 100 ----C--------------KSFESTS--TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 100 ----~--------------~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
+ ..|.+|. +--..+.||| +|.+|++|+.||.+.+||.++ ..++..++.|...
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGdsdG~v~~wdwkt------~kl~~~lkah~~~ 476 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDSDGKVNFWDWKT------TKLVSKLKAHDQP 476 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecCCccEEEeechh------hhhhhccccCCcc
Confidence 0 0012221 2345689999 999999999999999999998 6777788888776
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE 205 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~ 205 (240)
+. .+.|+|.... .+|+++.+ |.|++|+
T Consensus 477 ci----------~v~wHP~e~S----kvat~~w~-----G~Ikiwd 503 (503)
T KOG0282|consen 477 CI----------GVDWHPVEPS----KVATCGWD-----GLIKIWD 503 (503)
T ss_pred eE----------EEEecCCCcc----eeEecccC-----ceeEecC
Confidence 66 8899998754 89999999 9999996
No 102
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-20 Score=137.76 Aligned_cols=188 Identities=15% Similarity=0.202 Sum_probs=141.9
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+.+|...|++++.+|-+..+++++.|++|++||++.. ++...+.. ..-...+|.|. |.++|.+.....|++
T Consensus 96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-----~cqg~l~~--~~~pi~AfDp~--GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-----KCQGLLNL--SGRPIAAFDPE--GLIFALANGSELIKL 166 (311)
T ss_pred cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-----CCceEEec--CCCcceeECCC--CcEEEEecCCCeEEE
Confidence 6789999999999999999999999999999999832 33333332 22335789999 999999987779999
Q ss_pred EEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 85 WEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
||++.-+. .+..++. ........+.|+| +|++++.++..+.+.+.|.-. +.....+..+...-.
T Consensus 167 yD~Rs~dk-----gPF~tf~i~~~~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 167 YDLRSFDK-----GPFTTFSITDNDEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYPNAGN 233 (311)
T ss_pred EEecccCC-----CCceeEccCCCCccceeeeEEcC--CCCEEEEEeCCCcEEEEEccC------CcEeeeEeeccCCCC
Confidence 99986533 3444443 3467789999999 999999999999999999876 566666665533210
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.. -+.+|.|++. ++++|+.| |+|.+|++.++... ..+.+. +..++.++.|+|.
T Consensus 234 ----~~---~~a~ftPds~-----Fvl~gs~d-----g~i~vw~~~tg~~v----~~~~~~--~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 234 ----LP---LSATFTPDSK-----FVLSGSDD-----GTIHVWNLETGKKV----AVLRGP--NGGPVSCVRFNPR 286 (311)
T ss_pred ----cc---eeEEECCCCc-----EEEEecCC-----CcEEEEEcCCCcEe----eEecCC--CCCCccccccCCc
Confidence 00 1677999997 77777777 99999999877533 222322 5668999999984
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.7e-22 Score=145.03 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=162.7
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
++.+.+|.+.|..++.......+.+++.|.+.+||.++ ++.|+.++.+|.+.|++++|++. +.++++++.|++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-----sg~CL~~Y~GH~GSVNsikfh~s--~~L~lTaSGD~t 213 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-----SGACLATYTGHTGSVNSIKFHNS--GLLLLTASGDET 213 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeec-----cccceeeecccccceeeEEeccc--cceEEEccCCcc
Confidence 46688999999999998888899999999999999999 78999999999999999999998 999999999999
Q ss_pred EEEEEeeec----c--C--------------------------CC-cccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295 82 LLLWEEIVE----D--A--------------------------QP-LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 82 v~iwd~~~~----~--~--------------------------~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 128 (240)
-+||..... . . .+ ..-.++..+.+|...|.+..|-. .|+.+++++
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaS 291 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTAS 291 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeee
Confidence 999972110 0 0 00 11235667788999999999977 899999999
Q ss_pred CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 129 SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 129 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|.+..+||.++ +++++.+.+|..... .++-+|... ++++++.| .+.++||++.
T Consensus 292 WDRTAnlwDVEt------ge~v~~LtGHd~ELt----------HcstHptQr-----LVvTsSrD-----tTFRLWDFRe 345 (481)
T KOG0300|consen 292 WDRTANLWDVET------GEVVNILTGHDSELT----------HCSTHPTQR-----LVVTSSRD-----TTFRLWDFRE 345 (481)
T ss_pred ccccceeeeecc------CceeccccCcchhcc----------ccccCCcce-----EEEEeccC-----ceeEeccchh
Confidence 999999999998 788888888877766 677788776 88888888 9999999985
Q ss_pred CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 209 AHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.- ..+..+.||++.|+++.|.-|.
T Consensus 346 aI------~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 346 AI------QSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred hc------ceeeeecccccceeEEEEecCC
Confidence 32 2233455899999999998764
No 104
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=149.24 Aligned_cols=169 Identities=19% Similarity=0.270 Sum_probs=141.5
Q ss_pred cccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 6 ATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
.+|+++|..++|+.. ...||+||.|.+|++||+. ++++..++..|...|.++.|.|. .+.+|++|+.|++|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-----~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l 313 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-----TGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVAL 313 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-----CCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEe
Confidence 369999999999985 4699999999999999999 77889999999999999999887 4789999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.|.+.....+..|+ ..+.|-.++|.|+ ....+++++.||+|+-+|+|.+ .+++.+++.|...|+
T Consensus 314 ~D~R~~~~s~~~wk-------~~g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~IS--- 377 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWK-------FDGEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEIS--- 377 (463)
T ss_pred eeccCccccCceEE-------eccceEEEEecCC-CceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcc---
Confidence 99986433233333 3467888999985 3345788889999999999986 477888899999888
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
++++++.... +|++++.| +.|++|++......
T Consensus 378 -------gl~~n~~~p~----~l~t~s~d-----~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 378 -------GLSVNIQTPG----LLSTASTD-----KVVKLWKFDVDSPK 409 (463)
T ss_pred -------eEEecCCCCc----ceeecccc-----ceEEEEeecCCCCc
Confidence 8999888754 89999999 99999999876543
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.2e-21 Score=157.61 Aligned_cols=182 Identities=19% Similarity=0.317 Sum_probs=146.3
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
++-.+++++|+.+|+++|.|+.|-.|++-+.. .......+++|+++|.+|.|+|. +.+||+.+.||.|++|++
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEecc-----ccchheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEc
Confidence 44578999999999999999999999999998 44567788999999999999999 999999999999999999
Q ss_pred eeccCCCcccEEEEEeee--------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 88 IVEDAQPLQWKLCKSFES--------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
+.+ .+..++.+ ....+..++|+| ++..++..+.|+.|++|+... |+....+.....
T Consensus 168 ~~~-------~~~~tl~~v~k~n~~~~s~i~~~~aW~P--k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~~~~- 231 (933)
T KOG1274|consen 168 QDG-------ILSKTLTGVDKDNEFILSRICTRLAWHP--KGGTLAVPPVDNTVKVYSRKG------WELQFKLRDKLS- 231 (933)
T ss_pred ccc-------hhhhhcccCCccccccccceeeeeeecC--CCCeEEeeccCCeEEEEccCC------ceeheeeccccc-
Confidence 875 33333322 145678899999 877899999999999999987 777766653211
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
......++|+|+|. |||+++.+ |.|.|||.++-.. . . ....|.+++|.|+++
T Consensus 232 -------ss~~~~~~wsPnG~-----YiAAs~~~-----g~I~vWnv~t~~~-----~---~---~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 232 -------SSKFSDLQWSPNGK-----YIAASTLD-----GQILVWNVDTHER-----H---E---FKRAVCCEAWKPNAN 283 (933)
T ss_pred -------ccceEEEEEcCCCc-----EEeeeccC-----CcEEEEecccchh-----c---c---ccceeEEEecCCCCC
Confidence 01123899999998 99999999 9999999987221 1 1 223899999999886
Q ss_pred C
Q 026295 240 R 240 (240)
Q Consensus 240 ~ 240 (240)
+
T Consensus 284 ~ 284 (933)
T KOG1274|consen 284 A 284 (933)
T ss_pred e
Confidence 3
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.6e-21 Score=151.25 Aligned_cols=190 Identities=14% Similarity=0.187 Sum_probs=138.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEE---------EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFT---------CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.|++++|++.|..|++.+.....+|+|.++.. ..+ -....++|...+++.+|.|.. ...|++++.||+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGT 292 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCc
Confidence 79999999999988888888899999987431 011 112346899999999999983 567889999999
Q ss_pred EEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
++|||+.... +.+..|+ +.+-.++.++|+| ++..+|+|+.||.|.+|+...-.- ......-..|
T Consensus 293 lRiWdv~~~k------~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH 361 (641)
T KOG0772|consen 293 LRIWDVNNTK------SQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAH 361 (641)
T ss_pred EEEEecCCch------hheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCccc---ccceEeeecc
Confidence 9999997642 2233332 3456788999999 999999999999999999864110 0111111234
Q ss_pred cc--eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 157 ID--SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 157 ~~--~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
.. .|+ +|.|++++. +|++-+.| +++++||++..+........|.... +-++++|
T Consensus 362 ~~g~~It----------si~FS~dg~-----~LlSRg~D-----~tLKvWDLrq~kkpL~~~tgL~t~~----~~tdc~F 417 (641)
T KOG0772|consen 362 LPGQDIT----------SISFSYDGN-----YLLSRGFD-----DTLKVWDLRQFKKPLNVRTGLPTPF----PGTDCCF 417 (641)
T ss_pred CCCCcee----------EEEeccccc-----hhhhccCC-----CceeeeeccccccchhhhcCCCccC----CCCcccc
Confidence 33 444 999999998 89999999 9999999998654433333332221 5688999
Q ss_pred ecCC
Q 026295 235 ALNI 238 (240)
Q Consensus 235 sp~~ 238 (240)
|||.
T Consensus 418 SPd~ 421 (641)
T KOG0772|consen 418 SPDD 421 (641)
T ss_pred CCCc
Confidence 9985
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=143.97 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=149.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
.+..|-..|+|+.|+-||.+|+||+.||.|.+|.+..- .....+++..+..|+-+|+++...+.....++++++.|
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 46779999999999999999999999999999987421 11145678889999999999998765334689999999
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc----------eeE
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN----------WQL 149 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----------~~~ 149 (240)
.++++||+..+ ..+.++.- ...+.+++.+| ....+.+|+.+|.|.+.++..-..... ...
T Consensus 198 ~t~k~wdlS~g-------~LLlti~f-p~si~av~lDp--ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 198 RTIKLWDLSLG-------VLLLTITF-PSSIKAVALDP--AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred ceEEEEEeccc-------eeeEEEec-CCcceeEEEcc--cccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 99999999887 77766654 37789999999 888999999999998888764221111 112
Q ss_pred EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295 150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV 229 (240)
Q Consensus 150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v 229 (240)
+..+.+|.. ...+.|++.+-++. +|++|+.| |.|.|||..+.++...+.. ..+ +|
T Consensus 268 ~~~~~Gh~~--------~~~ITcLais~Dgt-----lLlSGd~d-----g~VcvWdi~S~Q~iRtl~~----~kg---pV 322 (476)
T KOG0646|consen 268 INVLVGHEN--------ESAITCLAISTDGT-----LLLSGDED-----GKVCVWDIYSKQCIRTLQT----SKG---PV 322 (476)
T ss_pred eeeeccccC--------CcceeEEEEecCcc-----EEEeeCCC-----CCEEEEecchHHHHHHHhh----hcc---cc
Confidence 222333333 12445999999998 99999999 9999999988765544421 224 78
Q ss_pred EEEEEec
Q 026295 230 YAVAWAL 236 (240)
Q Consensus 230 ~~v~~sp 236 (240)
+.+.+.|
T Consensus 323 tnL~i~~ 329 (476)
T KOG0646|consen 323 TNLQINP 329 (476)
T ss_pred ceeEeec
Confidence 8888744
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=142.51 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=134.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
++|..|.+.|+++.|+|....|++|+.|++|++||+.+... -+....+. ...+|.++.|.|. |.+++.|..-..+
T Consensus 166 RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q-d~~~vrsiSfHPs--GefllvgTdHp~~ 240 (430)
T KOG0640|consen 166 RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQ-DTEPVRSISFHPS--GEFLLVGTDHPTL 240 (430)
T ss_pred eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH--HHHHHHhh-ccceeeeEeecCC--CceEEEecCCCce
Confidence 45778999999999999999999999999999999986521 11122222 3568999999999 9999999988999
Q ss_pred EEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 83 LLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
++||+.+- ++...- .+|+..|+++.+++ ++.+.++++.||.|++||--+ ..++.++....
T Consensus 241 rlYdv~T~-------QcfvsanPd~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS------~rCv~t~~~AH-- 303 (430)
T KOG0640|consen 241 RLYDVNTY-------QCFVSANPDDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVS------NRCVRTIGNAH-- 303 (430)
T ss_pred eEEeccce-------eEeeecCcccccccceeEEEecC--CccEEEEeccCCcEEeecccc------HHHHHHHHhhc--
Confidence 99999764 444332 35889999999999 999999999999999999766 45555554321
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.+...| +..|..++. ++++.+.| ..|++|.+.++.
T Consensus 304 ---~gsevc---Sa~Ftkn~k-----yiLsSG~D-----S~vkLWEi~t~R 338 (430)
T KOG0640|consen 304 ---GGSEVC---SAVFTKNGK-----YILSSGKD-----STVKLWEISTGR 338 (430)
T ss_pred ---CCceee---eEEEccCCe-----EEeecCCc-----ceeeeeeecCCc
Confidence 112223 677998887 99999999 999999997653
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=132.65 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=89.3
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
++.|.++.|+|.++.|++++.||++++|+... ..+...+ .|..++.+.+|.+. ..+++|+.||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----~~l~~~~-~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----NSLKLKF-KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccc-----hhhhhhe-ecCCceeeeeccCC---ceEEEeccCceEEEEEec
Confidence 56899999999999999999999999999983 3344444 48999999999664 668899999999999998
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
.+ ....+..|...|++|.+++ ....+++|+.|++|++||.+
T Consensus 84 ~~--------~~~~igth~~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 84 TG--------NEDQIGTHDEGIRCIEYSY--EVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CC--------cceeeccCCCceEEEEeec--cCCeEEEcccCccEEEEecc
Confidence 75 3344556777888888876 55567777888888888776
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.5e-19 Score=124.48 Aligned_cols=198 Identities=14% Similarity=0.207 Sum_probs=137.3
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----------SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
..+|++++|+|.|.+.|+|+..++.+|-....- .++.......-+.|.+.|++.+|+|. |+++++|+.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn 109 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN 109 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence 348999999999999999999999998654210 11112223334568999999999999 999999999
Q ss_pred CCeEEEEEeeeccCC--C-------------------------------------------cccEEEEEeeeccccEEeE
Q 026295 79 DGSLLLWEEIVEDAQ--P-------------------------------------------LQWKLCKSFESTSTQVLDV 113 (240)
Q Consensus 79 d~~v~iwd~~~~~~~--~-------------------------------------------~~~~~~~~~~~~~~~v~~~ 113 (240)
|.+|++..+.....+ + ...+.+..+.+|++-|.++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 999998765432110 0 1112233445566666554
Q ss_pred EEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295 114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS 193 (240)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d 193 (240)
++- ++-.+++|+.|.+|++||++.+ .++..+... ....|--...+.+|+..|.+. +|++|-.|
T Consensus 190 -ysw--n~~m~~sgsqdktirfwdlrv~------~~v~~l~~~---~~~~glessavaav~vdpsgr-----ll~sg~~d 252 (350)
T KOG0641|consen 190 -YSW--NGAMFASGSQDKTIRFWDLRVN------SCVNTLDND---FHDGGLESSAVAAVAVDPSGR-----LLASGHAD 252 (350)
T ss_pred -EEe--cCcEEEccCCCceEEEEeeecc------ceeeeccCc---ccCCCcccceeEEEEECCCcc-----eeeeccCC
Confidence 233 6778999999999999999973 444333221 111121233455899999987 89999888
Q ss_pred CCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 194 d~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
....+||++.+... ..+. .|+..|++|.|||.
T Consensus 253 -----ssc~lydirg~r~i----q~f~---phsadir~vrfsp~ 284 (350)
T KOG0641|consen 253 -----SSCMLYDIRGGRMI----QRFH---PHSADIRCVRFSPG 284 (350)
T ss_pred -----CceEEEEeeCCcee----eeeC---CCccceeEEEeCCC
Confidence 99999999886422 2222 58889999999995
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=4.4e-20 Score=131.55 Aligned_cols=163 Identities=13% Similarity=0.219 Sum_probs=135.7
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+.+|.+.|..+-|....+.+++...|++||+||.. ++..++++.. ..+|+++..+++ |+++.++ ..+.|
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-----Tgt~v~sL~~-~s~VtSlEvs~d--G~ilTia-~gssV 207 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-----TGTEVQSLEF-NSPVTSLEVSQD--GRILTIA-YGSSV 207 (334)
T ss_pred hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec-----cCcEEEEEec-CCCCcceeeccC--CCEEEEe-cCcee
Confidence 3477899999999999988888888999999999999 7788888875 678999999999 9877665 45789
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceee
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVT 161 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~ 161 (240)
..||...- .++..++.+ ..|.+...+| +..++++|+.|..++.||..++ +.+-.+ ++|..+|.
T Consensus 208 ~Fwdaksf-------~~lKs~k~P-~nV~SASL~P--~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 208 KFWDAKSF-------GLLKSYKMP-CNVESASLHP--KKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH 271 (334)
T ss_pred EEeccccc-------cceeeccCc-cccccccccC--CCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence 99998664 566666543 6788899999 7789999999999999999984 333333 67888888
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
+|.|+|++. +.|+|+.| |+||||.....+
T Consensus 272 ----------cVrFSPdGE-----~yAsGSED-----GTirlWQt~~~~ 300 (334)
T KOG0278|consen 272 ----------CVRFSPDGE-----LYASGSED-----GTIRLWQTTPGK 300 (334)
T ss_pred ----------EEEECCCCc-----eeeccCCC-----ceEEEEEecCCC
Confidence 999999998 88999998 999999986654
No 112
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.86 E-value=8.6e-20 Score=149.01 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=147.3
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
+...+.+..|. ..++++++.|++|++|+.. +...+.. +.+|.+.|.++++... +.++++|+.|.++++||
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-----~~~~i~~~l~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-----NGYLILTRLVGHFGGVWGLAFPSG--GDKLVSGSTDKTERVWD 277 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecc-----cceEEEeeccCCCCCceeEEEecC--CCEEEEEecCCcEEeEe
Confidence 34567788877 6789999999999999998 5566666 9999999999999765 78999999999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
..++ .+...+.+|...+.++.. ....+++|+.|.+|++|++.+ ..++..+.+|..+|.
T Consensus 278 ~~sg-------~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n------~~~l~l~~~h~~~V~----- 335 (537)
T KOG0274|consen 278 CSTG-------ECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTN------GACLNLLRGHTGPVN----- 335 (537)
T ss_pred cCCC-------cEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccC------cceEEEeccccccEE-----
Confidence 9877 999999999999999987 445688899999999999997 677888877888887
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
++..+ .. ++++|+.| ++|++|++.+.+ ....+. +|+.+|+++.+.+
T Consensus 336 -----~v~~~--~~-----~lvsgs~d-----~~v~VW~~~~~~----cl~sl~---gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 336 -----CVQLD--EP-----LLVSGSYD-----GTVKVWDPRTGK----CLKSLS---GHTGRVYSLIVDS 381 (537)
T ss_pred -----EEEec--CC-----EEEEEecC-----ceEEEEEhhhce----eeeeec---CCcceEEEEEecC
Confidence 88877 33 89999999 999999999654 333444 6888999998876
No 113
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.85 E-value=4.1e-20 Score=135.77 Aligned_cols=201 Identities=14% Similarity=0.224 Sum_probs=156.1
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
..+.|+|.+|++++..+|.+-....|.||...+.. .++..++++.|...|+.|.|+|. .+.|++++.|..-.+|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC--CceeceehhhhCcceeEEeecCC--CCceeEccCCCCcccccc
Confidence 45689999999999999999999999999987653 48899999999999999999999 999999999999999998
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
..+ ..|++...+..+...++++.|+| +.+.|++|+....|-||-++...+ |=....++.. ..
T Consensus 85 ~~~----~~WkptlvLlRiNrAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENd---WWVsKhikkP---------ir 146 (361)
T KOG1523|consen 85 PSG----GTWKPTLVLLRINRAATCVKWSP--KENKFAVGSGARLISVCYYEQEND---WWVSKHIKKP---------IR 146 (361)
T ss_pred CCC----CeeccceeEEEeccceeeEeecC--cCceEEeccCccEEEEEEEecccc---eehhhhhCCc---------cc
Confidence 544 68999999988889999999999 888999999999999998765221 3222222211 11
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-------CCCCcceeEee----ecCCCCCCceEEEEEec
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-------AHNRWLPVAEL----ALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-------~~~~~~~~~~~----~~~~~h~~~v~~v~~sp 236 (240)
.++.++.|+|++. +|++|+.| ++.|||..-- ....|....++ .....-.++|..+.|+|
T Consensus 147 Stv~sldWhpnnV-----LlaaGs~D-----~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 147 STVTSLDWHPNNV-----LLAAGSTD-----GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred cceeeeeccCCcc-----eecccccC-----cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 3344999999998 89999999 9999997521 11122211111 11112445999999999
Q ss_pred CCCC
Q 026295 237 NIGR 240 (240)
Q Consensus 237 ~~~~ 240 (240)
+|.|
T Consensus 217 sG~~ 220 (361)
T KOG1523|consen 217 SGNR 220 (361)
T ss_pred CCCE
Confidence 9865
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=138.62 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=157.3
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.+.|.+++-+|+|.+|+.|...|.|++|.+. ++.++..+.+|=..|+++.|+.+ |.+|++++.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-----sG~LL~v~~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELS-----SGILLNVLSAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEec-----cccHHHHHHhhccceeEEEEeCC--CcEEEecCCCccEEEEEEE
Confidence 5689999999999999999899999999999 88899999999999999999999 9999999999999999976
Q ss_pred eccCC--CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 89 VEDAQ--PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
..-.. ...-+++..|..|.-.|+.+...+.....++++++.|.++++||+.. +.++..+.-. ..+.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~fp-~si~----- 221 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTITFP-SSIK----- 221 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEecC-Ccce-----
Confidence 43111 11346788899999999999998743456799999999999999987 5666555322 2233
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc---------ceeEeeecCCCCCC--ceEEEEEe
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW---------LPVAELALPEDRSD--EVYAVAWA 235 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~---------~~~~~~~~~~~h~~--~v~~v~~s 235 (240)
++..+|... .+.+|+++ |.|.+.++..-.... ..-..+....||.+ +|+|++.+
T Consensus 222 -----av~lDpae~-----~~yiGt~~-----G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 222 -----AVALDPAER-----VVYIGTEE-----GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred -----eEEEccccc-----EEEecCCc-----ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 889999887 89999999 999999875433110 11123344557888 99999999
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
-|+.
T Consensus 287 ~Dgt 290 (476)
T KOG0646|consen 287 TDGT 290 (476)
T ss_pred cCcc
Confidence 9985
No 115
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8e-21 Score=148.63 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=136.6
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
++.|.+|++.|+|+.|+.+|.+|++|+.|-.+.|||.. ..+++..+. +|.+.|.+++|.|.....++++|..|.
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecch-----hcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 56799999999999999999999999999999999998 556666665 899999999999986678899999999
Q ss_pred eEEEEEeeeccCCC---cccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCcccccc-eeEEeeeec
Q 026295 81 SLLLWEEIVEDAQP---LQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKN-WQLQAEFQN 155 (240)
Q Consensus 81 ~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~ 155 (240)
.|+++|+....+.+ ..-...+.+..|...|..++-.| ++ ..+.+++.||+++-+|++.+..-.. ..+...+..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 99999997421110 00134455667888899999888 66 6799999999999999997521110 001111100
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
... .+....++..+|.... +||+|++| ...++||.+
T Consensus 196 y~~-------~lielk~ltisp~rp~----~laVGgsd-----pfarLYD~R 231 (758)
T KOG1310|consen 196 YNP-------QLIELKCLTISPSRPY----YLAVGGSD-----PFARLYDRR 231 (758)
T ss_pred hch-------hhheeeeeeecCCCCc----eEEecCCC-----chhhhhhhh
Confidence 000 0011127888888854 99999999 999999943
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=2.3e-20 Score=142.78 Aligned_cols=199 Identities=14% Similarity=0.162 Sum_probs=146.7
Q ss_pred hcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 5 VATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+.+.++|++++|+|.. +++|+|..-|.|-+||+..... ...-+..+..|.++|.+|.|+|.. ...+++.+.||+|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d~d~v~~f~~hs~~Vs~l~F~P~n-~s~i~ssSyDGti 259 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-DKDGVYLFTPHSGPVSGLKFSPAN-TSQIYSSSYDGTI 259 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-ccCceEEeccCCccccceEecCCC-hhheeeeccCcee
Confidence 45678899999999965 5899999999999999951110 223345567899999999999983 4678888999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++-|++... ++.+.........+..+.|+. ....++.+..=|...+||++++.. ....+..|...|.
T Consensus 260 R~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f~~iD~R~~~s-----~~~~~~lh~kKI~- 326 (498)
T KOG4328|consen 260 RLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNFNVIDLRTDGS-----EYENLRLHKKKIT- 326 (498)
T ss_pred eeeeecchh-----hHHHhhcCccceeeeeccccC--CCccEEEeecccceEEEEeecCCc-----cchhhhhhhcccc-
Confidence 999997642 133333433456677788876 566677777777899999998632 2223344544555
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc-eeEeeecCCCCCCceEEEEEecCCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL-PVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
+|+++|.... +||||+-| ++.+|||++.-..+.. .+..+ .|.-.|.++.|||++|+
T Consensus 327 ---------sv~~NP~~p~----~laT~s~D-----~T~kIWD~R~l~~K~sp~lst~----~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 327 ---------SVALNPVCPW----FLATASLD-----QTAKIWDLRQLRGKASPFLSTL----PHRRSVNSAYFSPSGGT 383 (498)
T ss_pred ---------eeecCCCCch----heeecccC-----cceeeeehhhhcCCCCcceecc----cccceeeeeEEcCCCCc
Confidence 9999999854 99999999 9999999987544433 22222 48889999999999985
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=2.8e-20 Score=149.72 Aligned_cols=183 Identities=15% Similarity=0.230 Sum_probs=142.5
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC-CCCCEEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP-EFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~ 88 (240)
..+++++.+|+|++||+|..-|+++||++. ..+....+..|+.+|.++.|+.+ ...++|++++.|..|++||+.
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq-----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQ-----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEeh-----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 379999999999999999999999999998 66777888999999999999855 224689999999999999975
Q ss_pred eccCCCcccEEEEEeeecccc-------------------------------------------------EEeEEEeecC
Q 026295 89 VEDAQPLQWKLCKSFESTSTQ-------------------------------------------------VLDVQFGVSS 119 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------v~~~~~~~~~ 119 (240)
.. +.+++++.+|... +..++..|
T Consensus 535 rn------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-- 606 (1080)
T KOG1408|consen 535 RN------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-- 606 (1080)
T ss_pred cc------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC--
Confidence 32 2333333333333 44555555
Q ss_pred CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc---cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCC
Q 026295 120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA---IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP 196 (240)
Q Consensus 120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~ 196 (240)
+..++++++.|..|+||++.. ++....|++. .+..- .|..+|.+. |||+..+|
T Consensus 607 ~~k~v~t~cQDrnirif~i~s------gKq~k~FKgs~~~eG~lI----------Kv~lDPSgi-----Y~atScsd--- 662 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIES------GKQVKSFKGSRDHEGDLI----------KVILDPSGI-----YLATSCSD--- 662 (1080)
T ss_pred CcceEEEEecccceEEEeccc------cceeeeecccccCCCceE----------EEEECCCcc-----EEEEeecC---
Confidence 567788888899999999887 5555555532 22222 577899987 99999999
Q ss_pred CCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 197 QLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 197 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.++.+||+.++++..+. .||+..|+.+.|.||+
T Consensus 663 --ktl~~~Df~sgEcvA~m-------~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 663 --KTLCFVDFVSGECVAQM-------TGHSEAVTGVKFLNDC 695 (1080)
T ss_pred --CceEEEEeccchhhhhh-------cCcchheeeeeecccc
Confidence 99999999998766433 2799999999999996
No 118
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3e-20 Score=145.45 Aligned_cols=214 Identities=17% Similarity=0.177 Sum_probs=155.3
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCC---CCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSP---DPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+..|.+.|+.++|.+....|++|+.||++++|++. +......+++.+|++|.++|.++++.+. ++.+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n--~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN--GEHCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC--ceEEEeeccCce
Confidence 56788899999999999999999999999999993 3333367889999999999999999888 999999999999
Q ss_pred EEEEEeeeccCCCccc---EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc--cc-----ceeEEe
Q 026295 82 LLLWEEIVEDAQPLQW---KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI--LK-----NWQLQA 151 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~-----~~~~~~ 151 (240)
|++|++.......... .....+.+|...|+.+++++ ....|++++.||+|+.|+...... .. ...+..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 9999765221111111 33456778999999999998 777799999999999999864322 00 000000
Q ss_pred eee----------------------------cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295 152 EFQ----------------------------NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 203 (240)
Q Consensus 152 ~~~----------------------------~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i 203 (240)
.+. .......+.....+.++-+.++|... +..++..| +.|++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-----~~~~~hed-----~~Ir~ 515 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-----ITFTAHED-----RSIRF 515 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-----eeEecccC-----Cceec
Confidence 000 00000001111223556788888887 78888888 99999
Q ss_pred EEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 204 WEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 204 w~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+|..++........ |-..|+++++.|+++
T Consensus 516 ~dn~~~~~l~s~~a-------~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 516 FDNKTGKILHSMVA-------HKDSVTSLAIDPNGP 544 (577)
T ss_pred ccccccccchheee-------ccceecceeecCCCc
Confidence 99988765543332 555899999999985
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.8e-22 Score=157.71 Aligned_cols=185 Identities=12% Similarity=0.236 Sum_probs=158.3
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
++-.|...|.++..-..++.+++|+.|-.+-+|.+.++ ..+..+.+|+.+|-+|.|++. ..+|+.|..+|+|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-----~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK 95 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-----NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC-----chhheeeccCCcceeeecCcc--hhhhcccccCCcee
Confidence 34567888888888778899999999999999999854 456678999999999999998 88899999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||+... +.++++.+|...+.++.|+| -+.|++.++.|+.+++||.+. ..+...+..|...+.
T Consensus 96 ~wDleeA-------k~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~-- 158 (825)
T KOG0267|consen 96 VWDLEEA-------KIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVD-- 158 (825)
T ss_pred eeehhhh-------hhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhc------cCceeeecCCcceeE--
Confidence 9999876 88889999999999999999 999999999999999999996 567777777766666
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.+.|+|++. +++.|+.| ..++|||+..++ +..++ ..|++.|..+.|+|.
T Consensus 159 --------~l~lsP~Gr-----~v~~g~ed-----~tvki~d~~agk----~~~ef---~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 159 --------VLRLSPDGR-----WVASGGED-----NTVKIWDLTAGK----LSKEF---KSHEGKVQSLEFHPL 207 (825)
T ss_pred --------EEeecCCCc-----eeeccCCc-----ceeeeecccccc----ccccc---ccccccccccccCch
Confidence 899999998 89999998 999999997765 22233 357779999999884
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=7.6e-20 Score=146.33 Aligned_cols=176 Identities=21% Similarity=0.285 Sum_probs=145.5
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.|.+|+..|.|++...++. +++||.|.+++||... ++...+++|+..|+++..-|. . .+++|+.|.+|+
T Consensus 96 ~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-------~l~~~l~gH~asVWAv~~l~e--~-~~vTgsaDKtIk 164 (745)
T KOG0301|consen 96 TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-------ELVYSLQGHTASVWAVASLPE--N-TYVTGSADKTIK 164 (745)
T ss_pred hhhccccceeeeecCCcCc-eEecccccceEEecch-------hhhcccCCcchheeeeeecCC--C-cEEeccCcceee
Confidence 4789999999999888887 9999999999999876 566678999999999999887 5 788999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+|.- + +.+++|.+|...|+.+++-| ++. |++++.||.|++|++. ++++.++.+|...+.
T Consensus 165 lWk~--~-------~~l~tf~gHtD~VRgL~vl~--~~~-flScsNDg~Ir~w~~~-------ge~l~~~~ghtn~vY-- 223 (745)
T KOG0301|consen 165 LWKG--G-------TLLKTFSGHTDCVRGLAVLD--DSH-FLSCSNDGSIRLWDLD-------GEVLLEMHGHTNFVY-- 223 (745)
T ss_pred eccC--C-------chhhhhccchhheeeeEEec--CCC-eEeecCCceEEEEecc-------CceeeeeeccceEEE--
Confidence 9986 3 78999999999999999987 655 8999999999999995 588888888887776
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+++..++.. .+++++.| ++++||+... ....+..+.- .|+++.+-+++
T Consensus 224 --------sis~~~~~~-----~Ivs~gED-----rtlriW~~~e------~~q~I~lPtt---siWsa~~L~Ng 271 (745)
T KOG0301|consen 224 --------SISMALSDG-----LIVSTGED-----RTLRIWKKDE------CVQVITLPTT---SIWSAKVLLNG 271 (745)
T ss_pred --------EEEecCCCC-----eEEEecCC-----ceEEEeecCc------eEEEEecCcc---ceEEEEEeeCC
Confidence 788555544 79999999 9999999762 2333332222 67888877665
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.1e-20 Score=135.12 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=150.3
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.|.+|.+.|.+..|-..|+.+++++.|.+..+||++ +++++..+.+|....+..+-.|. ..++++++.|.+++
T Consensus 267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-----tge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-----TGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFR 339 (481)
T ss_pred eeeccccceEehhhhcCcceeeeeeccccceeeeec-----cCceeccccCcchhccccccCCc--ceEEEEeccCceeE
Confidence 367788999999999999999999999999999999 77899999999999998888888 78899999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||++.. ...+..|++|...|+++.|.. +.+ +++++.|.+|++||++.. ..++.++...
T Consensus 340 LWDFRea------I~sV~VFQGHtdtVTS~vF~~--dd~-vVSgSDDrTvKvWdLrNM-----RsplATIRtd------- 398 (481)
T KOG0300|consen 340 LWDFREA------IQSVAVFQGHTDTVTSVVFNT--DDR-VVSGSDDRTVKVWDLRNM-----RSPLATIRTD------- 398 (481)
T ss_pred eccchhh------cceeeeecccccceeEEEEec--CCc-eeecCCCceEEEeeeccc-----cCcceeeecC-------
Confidence 9999742 267888999999999999976 544 999999999999999863 3334444322
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+|.++.+.... ++|.-... +.|++||+........+. ....+|.-.|.|++|..+
T Consensus 399 ----S~~NRvavs~g~~-----iIAiPhDN-----RqvRlfDlnG~RlaRlPr---tsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 399 ----SPANRVAVSKGHP-----IIAIPHDN-----RQVRLFDLNGNRLARLPR---TSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred ----CccceeEeecCCc-----eEEeccCC-----ceEEEEecCCCccccCCc---ccccccceeeeeeecccc
Confidence 1223677776665 77777776 999999997643222111 134468889999999764
No 122
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=2.3e-19 Score=135.49 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=109.0
Q ss_pred ccc-cceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCC----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 7 TLD-KGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSS----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 7 ~h~-~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
-|. ..|..+.|.++.. +||||+.|..|+||.+..... ...+.+..+..|...|+.+.|+|+ |+++++|+.+|
T Consensus 10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g 87 (434)
T KOG1009|consen 10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGG 87 (434)
T ss_pred ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCc
Confidence 354 4799999999765 999999999999999864321 144566777889999999999999 99999999999
Q ss_pred eEEEEEeeec------c---CCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 81 SLLLWEEIVE------D---AQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 81 ~v~iwd~~~~------~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
.|.+|-...- . .....|.......+|...|..++|+| +++++++++.|+.+++||+..
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEecc
Confidence 9999987611 0 01356888888899999999999999 999999999999999999976
No 123
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=9.6e-20 Score=145.74 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=133.7
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
..+++|+..|.++++-|++ .++||+.|.+|++|.-. +++.+|.+|+..|..+++-++ ..|++++.||.|
T Consensus 134 ~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-------~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~I 202 (745)
T KOG0301|consen 134 YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-------TLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSI 202 (745)
T ss_pred cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------chhhhhccchhheeeeEEecC---CCeEeecCCceE
Confidence 3478999999999999988 88899999999999865 678899999999999999775 458899999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
++|++.. .++..+.+|+.-|.+++..+ ++..+++++.|++++||+-. ++.+.+.-+...+.
T Consensus 203 r~w~~~g--------e~l~~~~ghtn~vYsis~~~--~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsiW- 263 (745)
T KOG0301|consen 203 RLWDLDG--------EVLLEMHGHTNFVYSISMAL--SDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSIW- 263 (745)
T ss_pred EEEeccC--------ceeeeeeccceEEEEEEecC--CCCeEEEecCCceEEEeecC--------ceEEEEecCccceE-
Confidence 9999954 78999999999999999766 77889999999999999864 56666665554555
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
+++.-+++. +++|++| |.||||..+
T Consensus 264 ---------sa~~L~NgD------Ivvg~SD-----G~VrVfT~~ 288 (745)
T KOG0301|consen 264 ---------SAKVLLNGD------IVVGGSD-----GRVRVFTVD 288 (745)
T ss_pred ---------EEEEeeCCC------EEEeccC-----ceEEEEEec
Confidence 777777885 9999999 999999876
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.5e-19 Score=147.38 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=147.4
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-CCC-----cEEEE---------------------eE-------
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-SSS-----SFTCN---------------------LK------- 51 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~~~-----~~~~~---------------------~~------- 51 (240)
..|....+.++|.|+|.+|.+|+.||.|++|+.... ..+ .+..+ .+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 568899999999999999999999999999987533 100 00001 00
Q ss_pred --eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 52 --TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 52 --~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
+..-+-++.+++|+.+ |.+++.|+.|-.|++-+.... .....+++|..+|.++.|+| ++.+||+.+-
T Consensus 90 ~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~-------s~~~~lrgh~apVl~l~~~p--~~~fLAvss~ 158 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS-------SQEKVLRGHDAPVLQLSYDP--KGNFLAVSSC 158 (933)
T ss_pred ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc-------chheeecccCCceeeeeEcC--CCCEEEEEec
Confidence 0111346789999998 999999999999999998766 67788899999999999999 9999999999
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
||+|++||+.+ +.+...+..-...........| ..++|+|++. .|++...| +.|.+|+..+.
T Consensus 159 dG~v~iw~~~~------~~~~~tl~~v~k~n~~~~s~i~--~~~aW~Pk~g-----~la~~~~d-----~~Vkvy~r~~w 220 (933)
T KOG1274|consen 159 DGKVQIWDLQD------GILSKTLTGVDKDNEFILSRIC--TRLAWHPKGG-----TLAVPPVD-----NTVKVYSRKGW 220 (933)
T ss_pred CceEEEEEccc------chhhhhcccCCcccccccccee--eeeeecCCCC-----eEEeeccC-----CeEEEEccCCc
Confidence 99999999987 4444443322111110102233 3789999987 68888888 99999998875
Q ss_pred CCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 210 HNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
...+.+ ... .|+..+.+++|+|+|.
T Consensus 221 e~~f~L----r~~-~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 221 ELQFKL----RDK-LSSSKFSDLQWSPNGK 245 (933)
T ss_pred eeheee----ccc-ccccceEEEEEcCCCc
Confidence 444333 222 2445599999999974
No 125
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=130.52 Aligned_cols=196 Identities=19% Similarity=0.283 Sum_probs=144.4
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
+-+.|.|+.|.|++..+++-. |..|.+|++.....-....... -..+....++-+|+|...++.+++. .|++++.||
T Consensus 122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence 345899999999999988876 6899999998543100011111 1135666788899997668888775 489999999
Q ss_pred eeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 87 EIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
+++. ++...+. .|...|..+.|+|+ ...+|++|+.||.|+|||++.. ..+++++..|..++.
T Consensus 200 ~RT~-------~~~~sI~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~t-----k~pv~el~~HsHWvW---- 262 (370)
T KOG1007|consen 200 LRTM-------KKNNSIEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKT-----KFPVQELPGHSHWVW---- 262 (370)
T ss_pred ccch-------hhhcchhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCC-----CccccccCCCceEEE----
Confidence 9875 4444444 57788999999993 2346899999999999999974 567788889999988
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc----------------------ceeEeeecCC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW----------------------LPVAELALPE 223 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~----------------------~~~~~~~~~~ 223 (240)
+|.|+|.... ++++|++| ..|.+|....-..+. .+-..++...
T Consensus 263 ------~VRfn~~hdq----LiLs~~SD-----s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd 327 (370)
T KOG1007|consen 263 ------AVRFNPEHDQ----LILSGGSD-----SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD 327 (370)
T ss_pred ------EEEecCccce----EEEecCCC-----ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence 9999998853 99999999 999999764322110 1112233455
Q ss_pred CCCCceEEEEEecC
Q 026295 224 DRSDEVYAVAWALN 237 (240)
Q Consensus 224 ~h~~~v~~v~~sp~ 237 (240)
.|.+.|++++||.-
T Consensus 328 ehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 328 EHEDSVYALAWSSA 341 (370)
T ss_pred ccccceEEEeeccC
Confidence 69999999999863
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=2.6e-20 Score=144.37 Aligned_cols=181 Identities=19% Similarity=0.278 Sum_probs=143.2
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
+..|+++...|||+.|++|++-.++.|||+..+ +......+....-..+.++.+|+ .++.++++.||.|.|||+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAap---TprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP---TPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCC---CcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcc
Confidence 457899999999999999999999999999865 33444444433345778999999 9999999999999999999
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (240)
+. ..++.|++|...+.+|.+++ +|..|-+|+.|++|+.||+++...+.+. .|. .
T Consensus 540 nq-------~~VrqfqGhtDGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqh----dF~-------------S 593 (705)
T KOG0639|consen 540 NQ-------TLVRQFQGHTDGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQH----DFS-------------S 593 (705)
T ss_pred cc-------eeeecccCCCCCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhh----hhh-------------h
Confidence 87 89999999999999999998 9999999999999999999985332211 111 1
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.++++.++|++. .|++|... +.+.|-.....+ ++.+ . -|.+-|.+|.|++.|
T Consensus 594 QIfSLg~cP~~d-----WlavGMen-----s~vevlh~skp~-kyql----h---lheScVLSlKFa~cG 645 (705)
T KOG0639|consen 594 QIFSLGYCPTGD-----WLAVGMEN-----SNVEVLHTSKPE-KYQL----H---LHESCVLSLKFAYCG 645 (705)
T ss_pred hheecccCCCcc-----ceeeeccc-----CcEEEEecCCcc-ceee----c---ccccEEEEEEecccC
Confidence 233788999988 89999988 777776654322 2222 1 277799999999987
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.4e-19 Score=130.89 Aligned_cols=161 Identities=17% Similarity=0.318 Sum_probs=122.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED 91 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 91 (240)
..|+.|++.|.+||+|..||.|.|||+. +......+.+|..+|.+++||++ |+.|++++.|..|.+||+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-----T~~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-----TFRIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-----ccchhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC
Confidence 6799999999999999999999999999 77788888999999999999999 9999999999999999998763
Q ss_pred CC------CcccEE----------EEE----------eeecc-------------ccEEeEEEeecCCCcEEEEEeCCCc
Q 026295 92 AQ------PLQWKL----------CKS----------FESTS-------------TQVLDVQFGVSSTSLKLVAAYSDGH 132 (240)
Q Consensus 92 ~~------~~~~~~----------~~~----------~~~~~-------------~~v~~~~~~~~~~~~~l~~~~~dg~ 132 (240)
.- .+-|.. +.. +.... ....+..|.+ .|+++.+|+..|.
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr--~g~yIitGtsKGk 176 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR--RGKYIITGTSKGK 176 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC--CCCEEEEecCcce
Confidence 20 000000 000 00000 0011123544 7889999999999
Q ss_pred EEEEEecCcccccceeEEeeeeccc-ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 133 VKVYELLDPLILKNWQLQAEFQNAI-DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 133 v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
+.+++..+ .+++..++... ..|. .+.++-.+. .|++-.+| +.||.|+.+
T Consensus 177 llv~~a~t------~e~vas~rits~~~IK----------~I~~s~~g~-----~liiNtsD-----RvIR~ye~~ 226 (405)
T KOG1273|consen 177 LLVYDAET------LECVASFRITSVQAIK----------QIIVSRKGR-----FLIINTSD-----RVIRTYEIS 226 (405)
T ss_pred EEEEecch------heeeeeeeechheeee----------EEEEeccCc-----EEEEecCC-----ceEEEEehh
Confidence 99999987 57776665443 3444 777888776 89999999 999999986
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=138.68 Aligned_cols=174 Identities=19% Similarity=0.373 Sum_probs=132.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe------------------EeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNL------------------KTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.|+++|.|..|..|.|||+.-.. ...+.. ...+|+..|.+|.|+.. ..+.|+||+.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d--~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD--AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEecccccc--ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCce
Confidence 36799999999999999986332 111111 12368889999999776 4789999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc-ceeEEeeeeccccee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK-NWQLQAEFQNAIDSV 160 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~v 160 (240)
|++||+..+ ++...+..|...|.+++|+|. ...+|++|+.|++|++.|+|.+.... .|+. .+ .+
T Consensus 268 V~lWD~~~g-------~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g---~V 332 (463)
T KOG0270|consen 268 VKLWDVDTG-------KPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DG---EV 332 (463)
T ss_pred EEEEEcCCC-------CcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEe----cc---ce
Confidence 999999888 889999999999999999985 56789999999999999999643221 2221 11 12
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-CCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
. .+.|+|.... .+.++..| |+|+-+|.+.. +..|.. . .|.++|.+|++++.
T Consensus 333 E----------kv~w~~~se~----~f~~~tdd-----G~v~~~D~R~~~~~vwt~----~---AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 333 E----------KVAWDPHSEN----SFFVSTDD-----GTVYYFDIRNPGKPVWTL----K---AHDDEISGLSVNIQ 384 (463)
T ss_pred E----------EEEecCCCce----eEEEecCC-----ceEEeeecCCCCCceeEE----E---eccCCcceEEecCC
Confidence 2 7899998863 56666665 99999999886 434443 3 37779999999874
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=5.8e-20 Score=142.47 Aligned_cols=187 Identities=14% Similarity=0.251 Sum_probs=148.0
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
..|.+-|.++.+|...+++.||+. |.|+|||+...+ ...++..+. .....|.+....|+ |+.|++|+...++.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGeastls 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEASTLS 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccccCcccceeeeEecCC--CceEEeccccceee
Confidence 358888888999999999999987 899999998654 223333333 23567889999999 99999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
|||+..... ..-..+......+..++.+| +.+..++++.||.|.|||+.. ..++..|++|...+.
T Consensus 491 iWDLAapTp-----rikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhn------q~~VrqfqGhtDGas-- 555 (705)
T KOG0639|consen 491 IWDLAAPTP-----RIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGAS-- 555 (705)
T ss_pred eeeccCCCc-----chhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEccc------ceeeecccCCCCCce--
Confidence 999976532 33333333345678899999 999999999999999999997 688889999988877
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
|+..++++. .|-+|+-| ++||.||++++.+..+. ..++.|.++..+|++
T Consensus 556 --------cIdis~dGt-----klWTGGlD-----ntvRcWDlregrqlqqh--------dF~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 556 --------CIDISKDGT-----KLWTGGLD-----NTVRCWDLREGRQLQQH--------DFSSQIFSLGYCPTG 604 (705)
T ss_pred --------eEEecCCCc-----eeecCCCc-----cceeehhhhhhhhhhhh--------hhhhhheecccCCCc
Confidence 999999998 79999999 99999999986543221 245577888777765
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.6e-19 Score=141.65 Aligned_cols=170 Identities=13% Similarity=0.141 Sum_probs=143.5
Q ss_pred chhcccccceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEee-ecCccEEEEEEcCCCCCCEEEE
Q 026295 3 KAVATLDKGTTSSSW-NYCGQRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTK-VHAGAILKVVWVPPEFGDAVAC 75 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~-s~~~~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s 75 (240)
..+..|.+-|.|+++ .++..++|+|+-|+.|.|||+..... ........+. ++...|++++-++. |..+++
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivs 188 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVS 188 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEe
Confidence 357889999999999 77888999999999999999983311 0111122233 78889999999998 999999
Q ss_pred EecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295 76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 76 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
|+..+-+++||.+.. +.+..+++|+..|..+-.++ +|..++++++||+|++||+.. ..++.++..
T Consensus 189 Ggtek~lr~wDprt~-------~kimkLrGHTdNVr~ll~~d--DGt~~ls~sSDgtIrlWdLgq------QrCl~T~~v 253 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTC-------KKIMKLRGHTDNVRVLLVND--DGTRLLSASSDGTIRLWDLGQ------QRCLATYIV 253 (735)
T ss_pred cCcccceEEeccccc-------cceeeeeccccceEEEEEcC--CCCeEeecCCCceEEeeeccc------cceeeeEEe
Confidence 999999999999887 78888899999999999988 999999999999999999987 678888888
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
|...+. ++.-+|+-. .+.+|+.| +.|..=|+++.
T Consensus 254 H~e~VW----------aL~~~~sf~-----~vYsG~rd-----~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 254 HKEGVW----------ALQSSPSFT-----HVYSGGRD-----GNIYRTDLRNP 287 (735)
T ss_pred ccCceE----------EEeeCCCcc-----eEEecCCC-----CcEEecccCCc
Confidence 877666 666677665 89999999 99999998874
No 131
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=5.2e-19 Score=133.35 Aligned_cols=127 Identities=16% Similarity=0.212 Sum_probs=109.2
Q ss_pred hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.+.+|.+.|..++|+| +...||+||+|.+|.||.+..+.- .-.+++..+.+|...|..++|.|. ..+.|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-APNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-chhhHhhccCCc
Confidence 3668999999999999 557999999999999999975421 122567788999999999999887 467889999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
+|.+|++.++ ..+-++. |..-|.++.|+. +|.+|++.+.|..|+|||.++.
T Consensus 155 ~v~iWnv~tg-------eali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 155 TVSIWNVGTG-------EALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred eEEEEeccCC-------ceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCC
Confidence 9999999877 5566666 899999999987 9999999999999999999984
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=8.6e-19 Score=127.80 Aligned_cols=175 Identities=14% Similarity=0.196 Sum_probs=138.1
Q ss_pred ccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC-CCEEEEEecCCeEEE
Q 026295 7 TLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF-GDAVACICSDGSLLL 84 (240)
Q Consensus 7 ~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~i 84 (240)
.|.-+|.++.|=| |...+.+++-|.+++|||.. +.+....|+ .++.|++-+|+|-.. ..++++|..|-.|++
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-----TlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-----TLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL 172 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecc-----cceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence 4666899999988 55689999999999999998 777777776 478899999998733 246778888889999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM- 162 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~- 162 (240)
.|+..+ .....+.+|+..|.++.|+| ... .|++|+.||.|++||++.. -.+...+..|...-.+
T Consensus 173 CDi~SG-------s~sH~LsGHr~~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRra-----sgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 173 CDIASG-------SFSHTLSGHRDGVLAVEWSP--SSEWVLATGSADGAIRLWDIRRA-----SGCFRVLDQHNTKRPPI 238 (397)
T ss_pred EeccCC-------cceeeeccccCceEEEEecc--CceeEEEecCCCceEEEEEeecc-----cceeEEeecccCccCcc
Confidence 999888 88999999999999999999 555 4789999999999999863 1333334333321111
Q ss_pred ---cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 163 ---FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 163 ---~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
...+...++.++|..++. ++++.+.| ..+++|+...+..
T Consensus 239 ~~~n~ah~gkvngla~tSd~~-----~l~~~gtd-----~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDAR-----YLASCGTD-----DRIRVWNMESGRN 280 (397)
T ss_pred ccccccccceeeeeeecccch-----hhhhccCc-----cceEEeecccCcc
Confidence 223445778999999988 89999999 8999999977643
No 133
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1.4e-18 Score=126.30 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=144.7
Q ss_pred ccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 7 TLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 7 ~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
.+..++++..|+. +-+++.+.+-|.+..|||+.... .+.....+-.|..+|++++|... .-+.|++.+.||+||+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMF 224 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeecc--ccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEE
Confidence 4556889999987 66899999999999999998432 22334556689999999999875 24689999999999999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
|++..+.. ..+.+-.....+...++|++. +.+++|+-..| ..|.|.|++.+ ...+.++..|...|.
T Consensus 225 DLR~leHS----TIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P-----~tpva~L~~H~a~VN--- 291 (364)
T KOG0290|consen 225 DLRSLEHS----TIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVP-----CTPVARLRNHQASVN--- 291 (364)
T ss_pred Eecccccc----eEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCC-----CcceehhhcCccccc---
Confidence 99876321 223333333567788999864 55667765544 57999999987 677788888877665
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.++|.|.... .|++++.| ..+.|||+......-.....+ .. .-++.|+.++|+|.-
T Consensus 292 -------gIaWaPhS~~----hictaGDD-----~qaliWDl~q~~~~~~~dPil-ay-~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 292 -------GIAWAPHSSS----HICTAGDD-----CQALIWDLQQMPRENGEDPIL-AY-TAGGEVNQIQWSSSQ 347 (364)
T ss_pred -------ceEecCCCCc----eeeecCCc-----ceEEEEecccccccCCCCchh-hh-hccceeeeeeecccC
Confidence 9999998854 89999998 999999998654321111111 11 133489999999753
No 134
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=124.04 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=125.7
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
-.+.-++|+-++.+++.....|+|.|.... ..+++.+++.|.....+|.|+|+ |++||+|+.|..+.+||+..
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDE 220 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCC--CceEeeccccceeeccChhH
Confidence 467788999888888888888999999887 77899999999999999999999 99999999999999999977
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (240)
. -+++.+..+.-+|+.+.|+. +|++||+++.|..|-|=+.++ +..+.+++... +.
T Consensus 221 L-------iC~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~vet------Gd~~~eI~~~~-~t--------- 275 (313)
T KOG1407|consen 221 L-------ICERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVET------GDRVWEIPCEG-PT--------- 275 (313)
T ss_pred h-------hhheeeccccCceEEEEecc--CcceeeccCccceEEeEeccc------CCeEEEeeccC-Cc---------
Confidence 6 88999999999999999999 999999999999999988887 45455543322 12
Q ss_pred eeeEEEeCCCCCCCCceEEEEecC
Q 026295 170 SASISWNPQKGENQGSSFVLGFNS 193 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~d 193 (240)
+.|+|+|... +||-+.+|
T Consensus 276 -~tVAWHPk~~-----LLAyA~dd 293 (313)
T KOG1407|consen 276 -FTVAWHPKRP-----LLAYACDD 293 (313)
T ss_pred -eeEEecCCCc-----eeeEEecC
Confidence 3899999987 78887765
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=138.25 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=95.7
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
....|.++|..+.|.|-..+|++++.|.++++||+... +++.. +.+|.+.|.+++|.|. ....|++|+.||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-----~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-----RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGE 168 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-----eeecceeecccccccchhhhccC-CCcceeeccCCCc
Confidence 34579999999999996679999999999999999843 44444 7899999999999987 3578999999999
Q ss_pred EEEEEeeeccCC--------------C------cccEEEEEeeeccc----cEEeEEEeecCCCcEEEEEeC-CCcEEEE
Q 026295 82 LLLWEEIVEDAQ--------------P------LQWKLCKSFESTST----QVLDVQFGVSSTSLKLVAAYS-DGHVKVY 136 (240)
Q Consensus 82 v~iwd~~~~~~~--------------~------~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~-dg~v~iw 136 (240)
|.|||++..... + +.-+.+.....+.. .|+.+.| - |...|++++. |+.|+||
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVW 245 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVW 245 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEE
Confidence 999998754210 0 00000111112222 3444554 3 6667888887 9999999
Q ss_pred EecCcccc
Q 026295 137 ELLDPLIL 144 (240)
Q Consensus 137 ~~~~~~~~ 144 (240)
|++...-.
T Consensus 246 DLRk~~~~ 253 (720)
T KOG0321|consen 246 DLRKNYTA 253 (720)
T ss_pred eecccccc
Confidence 99976433
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.1e-18 Score=128.79 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=106.0
Q ss_pred ccccceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 7 TLDKGTTSSSWNYC----GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 7 ~h~~~v~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.|++....++|+.+ ..+||.|+.-|.|+|.|+. ..++...+.+|...|+.+++.|. ..+++++++.|.+|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-----~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-----SGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSV 160 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-----hhhhccceeccCccchhhhcCCC-CCcEEEEecCCceE
Confidence 36777888899874 3589999999999999998 66888899999999999999987 36799999999999
Q ss_pred EEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
++|++++. .++..|- +|...|.++.|++ +|.++++++.|.++++|++..+
T Consensus 161 RlwnI~~~-------~Cv~VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 161 RLWNIQTD-------VCVAVFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEeccCC-------eEEEEecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChh
Confidence 99999887 7777764 6999999999999 9999999999999999999843
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-17 Score=132.41 Aligned_cols=190 Identities=15% Similarity=0.251 Sum_probs=141.7
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
..+|+++||+.+.+.||.+-.||.|.||++.. .+-+...+.+++ ..|-+++|++ +..|.+.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC----CceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEec
Confidence 35899999999999999999999999999985 466666666554 5699999985 566778889999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
.+. ++...+......|++++.+| .+..++.|+.||.+..++.... ..+....+......+-
T Consensus 98 ~~l-------k~~~~~d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~----~I~~~r~l~rq~sRvL------ 158 (691)
T KOG2048|consen 98 HTL-------KQKYNIDSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPD----KITYKRSLMRQKSRVL------ 158 (691)
T ss_pred ccC-------ceeEEecCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCc----eEEEEeecccccceEE------
Confidence 887 88888888889999999999 8888999999996666655431 1122222323333333
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-CCCCceEEEEEecCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE-DRSDEVYAVAWALNI 238 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~ 238 (240)
+++|+|++. .++.|+.| |.|++||...+.........+.... +-..-|++|.|-.|+
T Consensus 159 ----slsw~~~~~-----~i~~Gs~D-----g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 159 ----SLSWNPTGT-----KIAGGSID-----GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred ----EEEecCCcc-----EEEecccC-----ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 899999997 69999999 9999999988765442222222111 123357888776554
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=132.92 Aligned_cols=197 Identities=11% Similarity=0.164 Sum_probs=144.2
Q ss_pred hccccc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDK-GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~-~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+.+++. .+.....++++++|+..+..|.|.|.... +.+.+.+++- .+.|..++|+.+ +..|+.++.+|.|.
T Consensus 298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-----T~eli~s~Ki-eG~v~~~~fsSd--sk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-----TKELITSFKI-EGVVSDFTFSSD--SKELLASGGTGEVY 369 (514)
T ss_pred CCCcccchhheeEecCCCCeEEEcccCceEEeehhh-----hhhhhheeee-ccEEeeEEEecC--CcEEEEEcCCceEE
Confidence 334443 56778899999999999999999999887 7778888874 788999999988 89999989999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||++.. .++..+... +.|....+++..++.+||+|+..|.|.|||..+.......+++..+......|
T Consensus 370 v~nl~~~-------~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I--- 438 (514)
T KOG2055|consen 370 VWNLRQN-------SCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI--- 438 (514)
T ss_pred EEecCCc-------ceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee---
Confidence 9999876 788887753 44544444433399999999999999999987644333344444444444444
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++.|+|+.. +||.++... -..+|+-.+.+.. .+..++....--+.|+|++|||.+|
T Consensus 439 -------tsl~Fn~d~q-----iLAiaS~~~---knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 439 -------TSLQFNHDAQ-----ILAIASRVK---KNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred -------eeeeeCcchh-----hhhhhhhcc---ccceEEEecccee----eeccCCCCCCcccceEEEEecCCCc
Confidence 4999999987 888887531 0678887775422 1222222223333799999999886
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.7e-18 Score=131.80 Aligned_cols=189 Identities=13% Similarity=0.161 Sum_probs=146.0
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+.+..|.+.|+++.++....+||+++..|-|.|..+. +......|..- ...|.-+.|+|. ...+|.+++.+|.
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-----t~~~tt~f~~~sgqsvRll~ys~s-kr~lL~~asd~G~ 188 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-----TKQKTTTFTIDSGQSVRLLRYSPS-KRFLLSIASDKGA 188 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-----cCccccceecCCCCeEEEeecccc-cceeeEeeccCCe
Confidence 5588999999999999999999999999999999987 44444455432 345678999987 2456778899999
Q ss_pred EEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
|.+||+... .+...+ ..|..+...|+|+|. +..+|++.+.|..|.+||.+. ......+. ...+.
T Consensus 189 VtlwDv~g~-------sp~~~~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Pl 253 (673)
T KOG4378|consen 189 VTLWDVQGM-------SPIFHASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPL 253 (673)
T ss_pred EEEEeccCC-------CcccchhhhccCCcCcceecCC-ccceEEEecccceEEEeeccc------ccccceee-ecCCc
Confidence 999999876 444444 468899999999995 556789999999999999986 23333332 22233
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
. .|+|.+++. +|+.|... |.|..||++..+.. +..+. .|...|++|+|-|..
T Consensus 254 s----------tvaf~~~G~-----~L~aG~s~-----G~~i~YD~R~~k~P---v~v~s---ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 254 S----------TVAFSECGT-----YLCAGNSK-----GELIAYDMRSTKAP---VAVRS---AHDASVTRVAFQPSP 305 (673)
T ss_pred c----------eeeecCCce-----EEEeecCC-----ceEEEEecccCCCC---ceEee---ecccceeEEEeeecc
Confidence 4 899999997 89999888 99999999975433 34344 477799999998863
No 140
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=9.5e-19 Score=127.16 Aligned_cols=195 Identities=19% Similarity=0.274 Sum_probs=140.2
Q ss_pred cchhcccccceEEEEECC-CCCEEEEEeCC-------CcEEEEeCCCCC----CCcEEEEeEee-ecCccEEEEEEcCCC
Q 026295 2 DKAVATLDKGTTSSSWNY-CGQRLATGSTD-------GTLSIFDSPDPS----SSSFTCNLKTK-VHAGAILKVVWVPPE 68 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~d-------~~i~iw~~~~~~----~~~~~~~~~~~-~h~~~v~~~~~~~~~ 68 (240)
.+.+..|.+.|..++-+| +.+.|+|+..+ ..+.||.+.++- ..+++++..+. .+-+.|.++.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn- 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN- 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence 355777889999999999 45677777553 236799987542 12455666665 45678999999998
Q ss_pred CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc
Q 026295 69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI 143 (240)
Q Consensus 69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~ 143 (240)
+..+++-. |..|.+|++..... ....+. +++...++-+|+|+.++..+++.+ |+++..||+++.
T Consensus 135 -s~klasm~-dn~i~l~~l~ess~------~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~-- 203 (370)
T KOG1007|consen 135 -SDKLASMD-DNNIVLWSLDESSK------IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM-- 203 (370)
T ss_pred -CCeeEEec-cCceEEEEcccCcc------hheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch--
Confidence 88888765 88999999976521 122221 245678889999988888666554 789999999973
Q ss_pred ccceeEEeeee-cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC
Q 026295 144 LKNWQLQAEFQ-NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP 222 (240)
Q Consensus 144 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 222 (240)
.....+. .|...++ .+.|+|+.. .+|++|+.| |.|+|||.+..+. ++.+++
T Consensus 204 ----~~~~sI~dAHgq~vr----------dlDfNpnkq----~~lvt~gDd-----gyvriWD~R~tk~---pv~el~-- 255 (370)
T KOG1007|consen 204 ----KKNNSIEDAHGQRVR----------DLDFNPNKQ----HILVTCGDD-----GYVRIWDTRKTKF---PVQELP-- 255 (370)
T ss_pred ----hhhcchhhhhcceee----------eccCCCCce----EEEEEcCCC-----ccEEEEeccCCCc---cccccC--
Confidence 2222332 3444455 899999885 388888888 9999999987542 334444
Q ss_pred CCCCCceEEEEEecC
Q 026295 223 EDRSDEVYAVAWALN 237 (240)
Q Consensus 223 ~~h~~~v~~v~~sp~ 237 (240)
+|+.+|++|.|+|-
T Consensus 256 -~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 256 -GHSHWVWAVRFNPE 269 (370)
T ss_pred -CCceEEEEEEecCc
Confidence 68889999999983
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.7e-18 Score=128.75 Aligned_cols=194 Identities=18% Similarity=0.195 Sum_probs=139.4
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~ 88 (240)
+.|+++.|+|....|++|+.|++++||.++.. +-..++.+.--..+|.+..|.|+ |. .+++++.-..+..||+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk---~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK---VNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCc---cChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecc
Confidence 58999999999999999999999999999865 23356666666789999999998 88 88888888899999986
Q ss_pred eccCC------CcccEE--------------------------------EEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295 89 VEDAQ------PLQWKL--------------------------------CKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 89 ~~~~~------~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
...-. +.+-+. +..++ -.+.|..++|+. ++..|++++.+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS--dsk~l~~~~~~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS--DSKELLASGGT 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec--CCcEEEEEcCC
Confidence 54210 000000 01111 125678899987 89999999999
Q ss_pred CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|.|.+||+++ ..++..+..... +. ..+++-++++. +||+|+.. |.|.|||..+..
T Consensus 366 GeV~v~nl~~------~~~~~rf~D~G~-v~--------gts~~~S~ng~-----ylA~GS~~-----GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 366 GEVYVWNLRQ------NSCLHRFVDDGS-VH--------GTSLCISLNGS-----YLATGSDS-----GIVNIYDGNSCF 420 (514)
T ss_pred ceEEEEecCC------cceEEEEeecCc-cc--------eeeeeecCCCc-----eEEeccCc-----ceEEEeccchhh
Confidence 9999999998 355555543211 11 12677777776 99999999 999999976532
Q ss_pred CC--cceeEeeecCCCCCCceEEEEEecCCC
Q 026295 211 NR--WLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 211 ~~--~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.. .++...+. .-...|++++|+||..
T Consensus 421 ~s~~PkPik~~d---NLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 421 ASTNPKPIKTVD---NLTTAITSLQFNHDAQ 448 (514)
T ss_pred ccCCCCchhhhh---hhheeeeeeeeCcchh
Confidence 22 12222222 2444899999999974
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.2e-19 Score=150.69 Aligned_cols=194 Identities=15% Similarity=0.333 Sum_probs=143.5
Q ss_pred cceEEEEECCCCCE----EEEEeCCCcEEEEeCCCC-CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 10 KGTTSSSWNYCGQR----LATGSTDGTLSIFDSPDP-SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 10 ~~v~~~~~s~~~~~----l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
.+.+.++|.+.|.. ||.|.+||.|.+||.... .......+.+...|++.|..+.|++. .++++++|+.||.|.|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILI 143 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEE
Confidence 47889999997765 999999999999998752 11133556777899999999999998 3669999999999999
Q ss_pred EEeeeccCCCcccEEEEEe--eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 85 WEEIVEDAQPLQWKLCKSF--ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
||+.+.+ ..... ......|.+++|+.. ...+|++++.+|++.|||++. .+.+..+..+...
T Consensus 144 WDlnn~~-------tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~------~~pii~ls~~~~~--- 206 (1049)
T KOG0307|consen 144 WDLNKPE-------TPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRK------KKPIIKLSDTPGR--- 206 (1049)
T ss_pred eccCCcC-------CCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccC------CCcccccccCCCc---
Confidence 9997642 11111 235578999999752 456799999999999999997 2334344333221
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+.++.++|+|+... .|++++.||.. -.|.+||++..... ..+ .++|.-.|.+++|+|.+
T Consensus 207 -----~~~S~l~WhP~~aT----ql~~As~dd~~--PviqlWDlR~assP---~k~---~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 207 -----MHCSVLAWHPDHAT----QLLVASGDDSA--PVIQLWDLRFASSP---LKI---LEGHQRGILSLSWCPQD 265 (1049)
T ss_pred -----cceeeeeeCCCCce----eeeeecCCCCC--ceeEeecccccCCc---hhh---hcccccceeeeccCCCC
Confidence 22348999999863 67888877633 58999999875433 222 23688899999999976
No 143
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=9.1e-18 Score=123.32 Aligned_cols=172 Identities=16% Similarity=0.257 Sum_probs=134.9
Q ss_pred EEEEEeCCCcEEEEeCCCCC-------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295 23 RLATGSTDGTLSIFDSPDPS-------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL 95 (240)
Q Consensus 23 ~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 95 (240)
.|++|++...|.=+++.... ..+..++..+..|.+.+++++. + +.++++|+.|-+|+|||++..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s--~~~~aSGssDetI~IYDm~k~----- 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--S--GPYVASGSSDETIHIYDMRKR----- 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--c--ceeEeccCCCCcEEEEeccch-----
Confidence 46778887777667665432 1144556777899999999998 3 789999999999999999877
Q ss_pred ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEE
Q 026295 96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISW 175 (240)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~ 175 (240)
..+..+-.|.+.|+++.|.+......|++|+.||.|.+|+... |++...++.|...|. .++.
T Consensus 74 --~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt----------~lsi 135 (362)
T KOG0294|consen 74 --KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVT----------DLSI 135 (362)
T ss_pred --hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccc----------eeEe
Confidence 7788888899999999999843334799999999999999987 999999999988777 9999
Q ss_pred eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+|.+. +-++-+.| +.++.|++-++..-+.+ .+. + .-+-|.|+|.|-
T Consensus 136 HPS~K-----LALsVg~D-----~~lr~WNLV~Gr~a~v~--~L~----~--~at~v~w~~~Gd 181 (362)
T KOG0294|consen 136 HPSGK-----LALSVGGD-----QVLRTWNLVRGRVAFVL--NLK----N--KATLVSWSPQGD 181 (362)
T ss_pred cCCCc-----eEEEEcCC-----ceeeeehhhcCccceee--ccC----C--cceeeEEcCCCC
Confidence 99997 45555566 99999999887644322 222 1 234489998774
No 144
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=2.8e-18 Score=131.50 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=141.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC------------cEEEEeEe-eecCccEEEEEEcCCCCCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS------------SFTCNLKT-KVHAGAILKVVWVPPEFGD 71 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~------------~~~~~~~~-~~h~~~v~~~~~~~~~~~~ 71 (240)
+..|.-.|.+++++|+.++.++++.+++|.=|++...... .+.+...- +.|...+.+++.+++ +.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gk 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GK 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--Cc
Confidence 4568889999999999999999999999999998632100 00011111 378888999999999 99
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA 151 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 151 (240)
+|++|+.|..|.||+.++. +.+..+.+|...|.+++|-. ....+.+++.|++|++|++.. ...+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~------~s~ve 280 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQ------LSYVE 280 (479)
T ss_pred EEEecCCCceEEEecCccc-------chhhcccccccceeeeeeec--CccceeeeecCCceEEEehhH------hHHHH
Confidence 9999999999999999887 88888999999999999965 556689999999999999986 55566
Q ss_pred eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295 152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA 231 (240)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~ 231 (240)
++-+|+..|. .+.-..... .+.+|+.| +++++|++....+.. +.+|.+.+-|
T Consensus 281 tlyGHqd~v~----------~IdaL~reR-----~vtVGgrD-----rT~rlwKi~eesqli--------frg~~~sidc 332 (479)
T KOG0299|consen 281 TLYGHQDGVL----------GIDALSRER-----CVTVGGRD-----RTVRLWKIPEESQLI--------FRGGEGSIDC 332 (479)
T ss_pred HHhCCcccee----------eechhcccc-----eEEecccc-----ceeEEEeccccceee--------eeCCCCCeee
Confidence 6667776665 443222222 56666677 999999995543221 1145567888
Q ss_pred EEEec
Q 026295 232 VAWAL 236 (240)
Q Consensus 232 v~~sp 236 (240)
++|=.
T Consensus 333 v~~In 337 (479)
T KOG0299|consen 333 VAFIN 337 (479)
T ss_pred EEEec
Confidence 87743
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=4.4e-17 Score=126.62 Aligned_cols=189 Identities=15% Similarity=0.216 Sum_probs=143.0
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------C-----------Cc--------E--------E
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS--------S-----------SS--------F--------T 47 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~--------~-----------~~--------~--------~ 47 (240)
+....|++.|.+++.-.+|.+|- |+.|+.|..||-.-.. + +. . .
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 34458999999999999997665 9999999999842110 0 00 0 0
Q ss_pred EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE
Q 026295 48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA 127 (240)
Q Consensus 48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 127 (240)
-.....+|......++-.|. ..++++++.|+.+++|+ .. ++..+. .-..++.++.|+| .| .++.|
T Consensus 360 f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v~lW~-~~--------k~~wt~-~~~d~~~~~~fhp--sg-~va~G 424 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHVRLWN-DH--------KLEWTK-IIEDPAECADFHP--SG-VVAVG 424 (626)
T ss_pred ceEEEEecccceeeEEcCCC--hhheeeccCcceEEEcc-CC--------ceeEEE-EecCceeEeeccC--cc-eEEEe
Confidence 01233578888899999898 89999999999999999 32 332222 2346788999999 88 79999
Q ss_pred eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
+..|...+.|.++ ..++.. .....++. ++.|+|++. +||+|+.| +.|+||.++
T Consensus 425 t~~G~w~V~d~e~------~~lv~~-~~d~~~ls----------~v~ysp~G~-----~lAvgs~d-----~~iyiy~Vs 477 (626)
T KOG2106|consen 425 TATGRWFVLDTET------QDLVTI-HTDNEQLS----------VVRYSPDGA-----FLAVGSHD-----NHIYIYRVS 477 (626)
T ss_pred eccceEEEEeccc------ceeEEE-EecCCceE----------EEEEcCCCC-----EEEEecCC-----CeEEEEEEC
Confidence 9999999999986 344333 22255566 899999998 99999999 999999999
Q ss_pred cCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 208 EAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 208 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
....++...... |.++|+.+.||+|+.
T Consensus 478 ~~g~~y~r~~k~-----~gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 478 ANGRKYSRVGKC-----SGSPITHLDWSSDSQ 504 (626)
T ss_pred CCCcEEEEeeee-----cCceeEEeeecCCCc
Confidence 887666555443 337999999999974
No 146
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.8e-18 Score=125.54 Aligned_cols=177 Identities=14% Similarity=0.223 Sum_probs=131.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295 22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK 101 (240)
Q Consensus 22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 101 (240)
..+|++-.+|.|++||.. +++.+..++++...++.+.|.....++.+.+++.||+|++||++.... ....
T Consensus 41 ~~vav~lSngsv~lyd~~-----tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG-----TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SARI 110 (376)
T ss_pred eeEEEEecCCeEEEEecc-----chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hhhe
Confidence 468899999999999998 778899999999999999997743478899999999999999987632 3333
Q ss_pred Eeeecc-ccEEeEEEeecCCCcEEEEEe----CCCcEEEEEecCcccccceeEEee-eecccceeeccccccceeeeEEE
Q 026295 102 SFESTS-TQVLDVQFGVSSTSLKLVAAY----SDGHVKVYELLDPLILKNWQLQAE-FQNAIDSVTMFRKASCISASISW 175 (240)
Q Consensus 102 ~~~~~~-~~v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~v~~ 175 (240)
.+..+. .+..+++... +++.+++|+ .+-.|.+||.|... +++.. ...|...|+ +++|
T Consensus 111 ~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~q-----q~l~~~~eSH~DDVT----------~lrF 173 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQ-----QLLRQLNESHNDDVT----------QLRF 173 (376)
T ss_pred eccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEecccc-----chhhhhhhhccCcce----------eEEe
Confidence 344443 3455555544 667777765 56789999999732 21222 246777777 9999
Q ss_pred eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+|..+. +|++|+.| |.|.|||.......-.+...+ .|...|..+.|.-++
T Consensus 174 HP~~pn----lLlSGSvD-----GLvnlfD~~~d~EeDaL~~vi----N~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 174 HPSDPN----LLLSGSVD-----GLVNLFDTKKDNEEDALLHVI----NHGSSIHLIGWLSKK 223 (376)
T ss_pred cCCCCC----eEEeeccc-----ceEEeeecCCCcchhhHHHhh----cccceeeeeeeecCC
Confidence 999865 99999999 999999997664433333333 266789999997654
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.8e-19 Score=148.72 Aligned_cols=191 Identities=17% Similarity=0.287 Sum_probs=142.6
Q ss_pred hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
....|.+.|..+.|++.+ ++||+|+.||.|.|||+.+.... ...- -..-.+.|.+++|+.. ..++|++++.+|.+
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~--~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPG--SQAPPSEIKCLSWNRK-VSHILASGSPSGRA 186 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCC--CCCCcccceEeccchh-hhHHhhccCCCCCc
Confidence 456799999999999966 59999999999999999864311 0110 1123467999999765 46789999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeecc--ccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTS--TQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.|||++.. +++-.+..+. ..+..++|+|... ..+++++.| -.|.+||+|.. -...+.++.|.
T Consensus 187 ~iWDlr~~-------~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~a-----ssP~k~~~~H~ 253 (1049)
T KOG0307|consen 187 VIWDLRKK-------KPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFA-----SSPLKILEGHQ 253 (1049)
T ss_pred eeccccCC-------CcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeeccccc-----CCchhhhcccc
Confidence 99999876 5555555432 4578999999422 346666544 46899999864 35566677887
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+- ++.|++.... +|++++.| +.|.+|+..+++ .+.++.. .++++.++.|+|-
T Consensus 254 ~Gil----------slsWc~~D~~----lllSsgkD-----~~ii~wN~~tgE----vl~~~p~---~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 254 RGIL----------SLSWCPQDPR----LLLSSGKD-----NRIICWNPNTGE----VLGELPA---QGNWCFDVQWCPR 307 (1049)
T ss_pred ccee----------eeccCCCCch----hhhcccCC-----CCeeEecCCCce----EeeecCC---CCcceeeeeecCC
Confidence 7777 8999998843 89999999 999999998865 3334443 4559999999984
No 148
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=1.1e-18 Score=130.37 Aligned_cols=158 Identities=13% Similarity=0.201 Sum_probs=126.1
Q ss_pred cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
+.|.++.|+|-. ..|++|..|+.|.|||+. +..++..+- .+...+.|+|+|. +-.|+++..|..+..||++
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R-----~~~Pl~KVi-~~mRTN~IswnPe--afnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLR-----QASPLKKVI-LTMRTNTICWNPE--AFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecc-----cCCccceee-eeccccceecCcc--ccceeeccccccceehhhh
Confidence 578999999955 688899999999999998 344555443 2455678999997 8889999999999999998
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (240)
... .++..+.+|.+.|..++|+| .|+-+++|+.|.+|+||..+.... .... |. +...
T Consensus 260 ~l~------~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~~~~S---RdiY-----ht-------kRMq 316 (433)
T KOG0268|consen 260 NLS------RPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVNHGHS---RDIY-----HT-------KRMQ 316 (433)
T ss_pred hhc------ccchhhcccceeEEEeccCC--CcchhccccccceEEEeecCCCcc---hhhh-----hH-------hhhh
Confidence 764 68888999999999999999 999999999999999999875210 0100 11 1222
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|.+|.|+.+.. ++++|+.| +.|++|....
T Consensus 317 ~V~~Vk~S~Dsk-----yi~SGSdd-----~nvRlWka~A 346 (433)
T KOG0268|consen 317 HVFCVKYSMDSK-----YIISGSDD-----GNVRLWKAKA 346 (433)
T ss_pred eeeEEEEecccc-----EEEecCCC-----cceeeeecch
Confidence 345899999987 88888888 9999998754
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=136.72 Aligned_cols=182 Identities=16% Similarity=0.251 Sum_probs=150.0
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---eecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---KVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
..+..+++++.++.|++.+.|...|.|.+|+++ .+.....+ ..|.++|..++.... ++.+++++.+|.++
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ-----SGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ-----SGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILK 518 (910)
T ss_pred ccCcceEEEEEeccCceEEEeccCCeEEEEEcc-----cCeeecccccCccccCceeEEEecCC--CceEEEccCcceEE
Confidence 344689999999999999999999999999998 55555566 479999999999777 88999999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
.||+... ..+..++. ...+..+..+. ....++.+..|-.|+++|..+ ...+.+|.+|...+.
T Consensus 519 fw~f~~k-------~l~~~l~l-~~~~~~iv~hr--~s~l~a~~~ddf~I~vvD~~t------~kvvR~f~gh~nrit-- 580 (910)
T KOG1539|consen 519 FWDFKKK-------VLKKSLRL-GSSITGIVYHR--VSDLLAIALDDFSIRVVDVVT------RKVVREFWGHGNRIT-- 580 (910)
T ss_pred EEecCCc-------ceeeeecc-CCCcceeeeee--hhhhhhhhcCceeEEEEEchh------hhhhHHhhcccccee--
Confidence 9999875 45555543 35667777766 777789999999999999987 677788888888877
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++|+|++. .|++++.| ++||+||+.++... ..+. -..+.+.+.|||++-
T Consensus 581 --------d~~FS~Dgr-----WlisasmD-----~tIr~wDlpt~~lI----D~~~----vd~~~~sls~SPngD 630 (910)
T KOG1539|consen 581 --------DMTFSPDGR-----WLISASMD-----STIRTWDLPTGTLI----DGLL----VDSPCTSLSFSPNGD 630 (910)
T ss_pred --------eeEeCCCCc-----EEEEeecC-----CcEEEEeccCccee----eeEe----cCCcceeeEECCCCC
Confidence 999999998 99999999 99999999987532 2221 334789999999873
No 150
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=2.7e-19 Score=135.45 Aligned_cols=184 Identities=14% Similarity=0.210 Sum_probs=146.0
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+..|.+.|..+.|-++...|++|+.|..|++|+.... ....+.++.+..+.|+.+.|.++ +..+++++.|+.+++
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~---k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE---KSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRL 245 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccc---hhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceee
Confidence 5679999999999999899999999999999999854 34577788888899999999999 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
|++... +...++.+|+..|+++.|.- ....+++|+.|.+|++||+.. ..+..++-...
T Consensus 246 Wnvd~~-------r~~~TLsGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k------~~C~kt~l~~S------- 303 (459)
T KOG0288|consen 246 WNVDSL-------RLRHTLSGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQK------AYCSKTVLPGS------- 303 (459)
T ss_pred eeccch-------hhhhhhcccccceeeehhhc--cccceeeccccchhhhhhhhh------hheeccccccc-------
Confidence 999876 88899999999999999976 555599999999999999987 34443322111
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.+++|...+. .+++|..| ++||.||.+...... +.+. + +.|++|..++++.
T Consensus 304 ----~cnDI~~~~~-------~~~SgH~D-----kkvRfwD~Rs~~~~~----sv~~---g-g~vtSl~ls~~g~ 354 (459)
T KOG0288|consen 304 ----QCNDIVCSIS-------DVISGHFD-----KKVRFWDIRSADKTR----SVPL---G-GRVTSLDLSMDGL 354 (459)
T ss_pred ----cccceEecce-------eeeecccc-----cceEEEeccCCceee----Eeec---C-cceeeEeeccCCe
Confidence 1124554422 57778888 999999998876432 2231 2 2899998888763
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=5.2e-18 Score=135.28 Aligned_cols=122 Identities=20% Similarity=0.356 Sum_probs=106.4
Q ss_pred cceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 10 KGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 10 ~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
..|+.++|+| |..+||.++.||.|+||.+..++-. ...+-..+..|...|+++.|.|- ..+.|++++.|.+|++||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL-AadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPL-AADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecch-hhhHhhhhhccceeeeee
Confidence 4789999999 6789999999999999999755321 33455677889999999999886 468899999999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
+.+. .....+.+|+..|..++|+| +|+.+++.+.||+|++|+.++.
T Consensus 707 l~~~-------~~~~~l~gHtdqIf~~AWSp--dGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 707 LANA-------KLYSRLVGHTDQIFGIAWSP--DGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhh-------hhhheeccCcCceeEEEECC--CCcceeeeecCceEEEeCCCCC
Confidence 9887 67778899999999999999 9999999999999999998864
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=122.73 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=133.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-----eecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-----KVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
+..+++|+|||.+|++|.. .+|++||+..++.. ...... .+..+.+.+++|+|. ....++.++.-..+-||
T Consensus 160 aAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~--c~vy~t~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy 235 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRD--CPVYTTVTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIY 235 (406)
T ss_pred hheeEEecCCCCeEeeccc-ceEEEeeccCCCCC--CcchhhhhcccccccceeeeeeccCC-CCcceeeecccceeeeE
Confidence 4568999999999988765 79999999644321 111111 244678999999998 34578888888888888
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.-... .+++.+-+|.+.|+.++|++ +|+.|.+|. .|-.|..||++.. ..++-.+..|.....
T Consensus 236 ~~~~~-------~pl~llggh~gGvThL~~~e--dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~L~rhv~~TN--- 298 (406)
T KOG2919|consen 236 NDDGR-------RPLQLLGGHGGGVTHLQWCE--DGNKLFSGARKDDKILCWDIRYS-----RDPVYALERHVGDTN--- 298 (406)
T ss_pred ecCCC-------CceeeecccCCCeeeEEecc--CcCeecccccCCCeEEEEeehhc-----cchhhhhhhhccCcc---
Confidence 77665 78888889999999999999 999999887 4678999999974 344444544433110
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..|-|.-+.. +..|++|+.| |.|++||+...-. +.. ....|+..|+.|+++|.
T Consensus 299 ------QRI~FDld~~---~~~LasG~td-----G~V~vwdlk~~gn-~~s-----v~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 299 ------QRILFDLDPK---GEILASGDTD-----GSVRVWDLKDLGN-EVS-----VTGNYSDTVNGVSLNPI 351 (406)
T ss_pred ------ceEEEecCCC---CceeeccCCC-----ccEEEEecCCCCC-ccc-----ccccccccccceecCcc
Confidence 1455544433 3489999998 9999999987322 111 22247778999999985
No 153
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=3.2e-17 Score=119.82 Aligned_cols=160 Identities=20% Similarity=0.286 Sum_probs=119.3
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
|....|+++|.+++|+.+|..+++|+.|+.+++||+. +. .+..+..|.++|..+.|.+.-.-..|++|+.|.+|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-----S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTl 139 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-----SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTL 139 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-----CC-CeeeeeecccceeEEEEecCCCcceeEecccccce
Confidence 4467899999999999999999999999999999998 44 45667789999999999877212479999999999
Q ss_pred EEEEeeeccC---------------------------------------------CCcccE-------------------
Q 026295 83 LLWEEIVEDA---------------------------------------------QPLQWK------------------- 98 (240)
Q Consensus 83 ~iwd~~~~~~---------------------------------------------~~~~~~------------------- 98 (240)
+.||.+.... ....|+
T Consensus 140 KfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 140 KFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred eecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 9999664321 001111
Q ss_pred --------------EEEEeeecc---------ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295 99 --------------LCKSFESTS---------TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 99 --------------~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
.-.+|+.|+ -.|.+|+|+| ....|++++.||+..+||-.. ...+.....
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP--~hgtlvTaGsDGtf~FWDkda------r~kLk~s~~ 291 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP--VHGTLVTAGSDGTFSFWDKDA------RTKLKTSET 291 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec--ccceEEEecCCceEEEecchh------hhhhhccCc
Confidence 112234443 2467899999 777899999999999999765 233344456
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF 191 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~ 191 (240)
+..+|+ +.+|+.++. ++|-+.
T Consensus 292 ~~qpIt----------cc~fn~~G~-----ifaYA~ 312 (347)
T KOG0647|consen 292 HPQPIT----------CCSFNRNGS-----IFAYAL 312 (347)
T ss_pred CCCccc----------eeEecCCCC-----EEEEEe
Confidence 666676 888998887 665554
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.8e-16 Score=126.98 Aligned_cols=190 Identities=17% Similarity=0.178 Sum_probs=147.6
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
....++|.+++.+|.+..++.|+.||.+..++.... ..+....+...+++|.+++|+|+ +..+++|+.||.|++|
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIW 181 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecCC--ccEEEecccCceEEEE
Confidence 345679999999999999999999997777776532 34444556667899999999999 9999999999999999
Q ss_pred EeeeccCCCcccEEEEEee------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 86 EEIVEDAQPLQWKLCKSFE------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
|...+.. ..+.+.+ ....-|+++.|-. ++. +++|.+.|+|++||... +.+++.+..|...
T Consensus 182 d~~~~~t-----~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~t-I~sgDS~G~V~FWd~~~------gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 182 DVKSGQT-----LHIITMQLDRLSKREPTIVWSVLFLR--DST-IASGDSAGTVTFWDSIF------GTLIQSHSCHDAD 247 (691)
T ss_pred EcCCCce-----EEEeeecccccccCCceEEEEEEEee--cCc-EEEecCCceEEEEcccC------cchhhhhhhhhcc
Confidence 9987632 1111111 1345678888865 665 99999999999999987 6777777777766
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
+- +++-.++.. ++.+++.| +.|.-|...+...+|..... ...|...|++++-.++
T Consensus 248 Vl----------~Lav~~~~d-----~vfsaGvd-----~~ii~~~~~~~~~~wv~~~~---r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 248 VL----------ALAVADNED-----RVFSAGVD-----PKIIQYSLTTNKSEWVINSR---RDLHAHDVRSMAVIEN 302 (691)
T ss_pred ee----------EEEEcCCCC-----eEEEccCC-----CceEEEEecCCccceeeecc---ccCCcccceeeeeecc
Confidence 65 888888877 89999999 99999999887776655433 3357778999887665
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=119.51 Aligned_cols=195 Identities=18% Similarity=0.231 Sum_probs=133.3
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEE--------------------
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKV-------------------- 62 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~-------------------- 62 (240)
+.+..|-.+|.+++||++|++|+|++.|..|.+||+.++. ++..+.- ..+|+..
T Consensus 59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-----~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 59 RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-----PLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-----ceeEEEc-cCccceeeeccccCCeEEEEEecCCcE
Confidence 5578899999999999999999999999999999998542 2222211 1111111
Q ss_pred ---------------------------EEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecc-ccEEeEE
Q 026295 63 ---------------------------VWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQ 114 (240)
Q Consensus 63 ---------------------------~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 114 (240)
.|.+. |+++++|...|.+.+++..+. +++..++-.. ..|..+.
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~yIitGtsKGkllv~~a~t~-------e~vas~rits~~~IK~I~ 203 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKYIITGTSKGKLLVYDAETL-------ECVASFRITSVQAIKQII 203 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccCC--CCEEEEecCcceEEEEecchh-------eeeeeeeechheeeeEEE
Confidence 13333 889999999999999999876 8888888665 8899999
Q ss_pred EeecCCCcEEEEEeCCCcEEEEEecCccccc---ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295 115 FGVSSTSLKLVAAYSDGHVKVYELLDPLILK---NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF 191 (240)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~ 191 (240)
++. .|.+|+.-+.|..|+.|+++.-...+ ..++.++++...... .=++++|+-++. |++.++
T Consensus 204 ~s~--~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~--------~Wk~ccfs~dge-----Yv~a~s 268 (405)
T KOG1273|consen 204 VSR--KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL--------QWKKCCFSGDGE-----YVCAGS 268 (405)
T ss_pred Eec--cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh--------hhhheeecCCcc-----EEEecc
Confidence 988 99999999999999999987422211 112222222111100 002677887775 666665
Q ss_pred cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 192 ~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.-- ..++||.-..+. +++.|.+.+| ....+|.|+|-
T Consensus 269 ~~a----HaLYIWE~~~Gs----LVKILhG~kg--E~l~DV~whp~ 304 (405)
T KOG1273|consen 269 ARA----HALYIWEKSIGS----LVKILHGTKG--EELLDVNWHPV 304 (405)
T ss_pred ccc----eeEEEEecCCcc----eeeeecCCch--hheeecccccc
Confidence 432 789999987765 4444444332 36788888874
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=5.7e-18 Score=131.37 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=136.1
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 92 (240)
.|++......++++|+..++|+|||+. .-.+.+.+++|...|+++.|+.. ..+|++++..|.|.|..+.++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-----~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~-- 153 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLR-----AKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTK-- 153 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhH-----HHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccC--
Confidence 455555555899999999999999998 44577788999999999999888 899999999999999999876
Q ss_pred CCcccEEEEEeeec-cccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEe-eeecccceeeccccccce
Q 026295 93 QPLQWKLCKSFEST-STQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 93 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~ 169 (240)
....+|... ...|+-+.|+| ..+ +|.+++.+|.|.+||.... ..+. -...|..+.+
T Consensus 154 -----~~tt~f~~~sgqsvRll~ys~--skr~lL~~asd~G~VtlwDv~g~------sp~~~~~~~HsAP~~-------- 212 (673)
T KOG4378|consen 154 -----QKTTTFTIDSGQSVRLLRYSP--SKRFLLSIASDKGAVTLWDVQGM------SPIFHASEAHSAPCR-------- 212 (673)
T ss_pred -----ccccceecCCCCeEEEeeccc--ccceeeEeeccCCeEEEEeccCC------CcccchhhhccCCcC--------
Confidence 555556543 45677899998 444 4778999999999999862 2222 2234555544
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.+||+|... .+|++-+.| .+|.+||.+.....-.+. -+.+...|+|+|+|.
T Consensus 213 --gicfspsne----~l~vsVG~D-----kki~~yD~~s~~s~~~l~--------y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 213 --GICFSPSNE----ALLVSVGYD-----KKINIYDIRSQASTDRLT--------YSHPLSTVAFSECGT 263 (673)
T ss_pred --cceecCCcc----ceEEEeccc-----ceEEEeecccccccceee--------ecCCcceeeecCCce
Confidence 899999885 388999999 999999988543222221 223899999999983
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.8e-17 Score=131.09 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=131.8
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG---- 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---- 80 (240)
+.+|++.|+++..+|.|..||+|+.||+|+||.+. ++.++.++.. .+.|.+|+|+|...-.+|+++-...
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-----TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-----TGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEee-----cceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence 56899999999999999999999999999999998 6677776653 4567777777652222333332221
Q ss_pred -----------------------------------------------------------------------------eEE
Q 026295 81 -----------------------------------------------------------------------------SLL 83 (240)
Q Consensus 81 -----------------------------------------------------------------------------~v~ 83 (240)
.|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 222
Q ss_pred EEEeeeccCCC-----------cccEE------------EEE-----------eeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 84 LWEEIVEDAQP-----------LQWKL------------CKS-----------FESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 84 iwd~~~~~~~~-----------~~~~~------------~~~-----------~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
|.++.....+. ..|.+ ++. +......|..++.+| .|..|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp--~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP--NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC--CCCeEEEecC
Confidence 22222110000 00000 000 001235677888888 8889999999
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
|+.+..+|+.-. -++.+.+.-|...++ +|+|++.-. +|++|+.| +.+.||.-.-.
T Consensus 628 d~k~~WfDldls-----skPyk~lr~H~~avr----------~Va~H~ryP-----Lfas~sdD-----gtv~Vfhg~VY 682 (733)
T KOG0650|consen 628 DKKMCWFDLDLS-----SKPYKTLRLHEKAVR----------SVAFHKRYP-----LFASGSDD-----GTVIVFHGMVY 682 (733)
T ss_pred CCeeEEEEcccC-----cchhHHhhhhhhhhh----------hhhhccccc-----eeeeecCC-----CcEEEEeeeee
Confidence 999999998753 345666777877777 999999988 89999988 99999975322
Q ss_pred C-----CCcceeEeeecCCCCCCc----eEEEEEecCC
Q 026295 210 H-----NRWLPVAELALPEDRSDE----VYAVAWALNI 238 (240)
Q Consensus 210 ~-----~~~~~~~~~~~~~~h~~~----v~~v~~sp~~ 238 (240)
. ....+++.|. +|... |.++.|+|..
T Consensus 683 ~Dl~qnpliVPlK~L~---gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 683 NDLLQNPLIVPLKRLR---GHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred hhhhcCCceEeeeecc---CceeecccceEeecccCCC
Confidence 1 1223344444 55545 8999999964
No 158
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.9e-17 Score=135.24 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=135.1
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
..|.++|+.++.+.-++.+++++.+|.+++||..+ ..++..++- ...+..+.++.. ..+++.+..|-.|+++
T Consensus 490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-----k~l~~~l~l-~~~~~~iv~hr~--s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-----KVLKKSLRL-GSSITGIVYHRV--SDLLAIALDDFSIRVV 561 (910)
T ss_pred ccccCceeEEEecCCCceEEEccCcceEEEEecCC-----cceeeeecc-CCCcceeeeeeh--hhhhhhhcCceeEEEE
Confidence 47999999999999999999999999999999984 346666653 466778888777 7889999999999999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
|..+. +.++.|.+|...|+.++||| +|++|++++.|++|++||+.+ ..++..+...... .
T Consensus 562 D~~t~-------kvvR~f~gh~nritd~~FS~--DgrWlisasmD~tIr~wDlpt------~~lID~~~vd~~~-~---- 621 (910)
T KOG1539|consen 562 DVVTR-------KVVREFWGHGNRITDMTFSP--DGRWLISASMDSTIRTWDLPT------GTLIDGLLVDSPC-T---- 621 (910)
T ss_pred Echhh-------hhhHHhhccccceeeeEeCC--CCcEEEEeecCCcEEEEeccC------cceeeeEecCCcc-e----
Confidence 99877 88999999999999999999 999999999999999999988 6777666443222 2
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
+++|+|++. +|||...|- .-|++|.=
T Consensus 622 ------sls~SPngD-----~LAT~Hvd~----~gIylWsN 647 (910)
T KOG1539|consen 622 ------SLSFSPNGD-----FLATVHVDQ----NGIYLWSN 647 (910)
T ss_pred ------eeEECCCCC-----EEEEEEecC----ceEEEEEc
Confidence 799999998 999999875 68999963
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.1e-17 Score=125.59 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=126.8
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 92 (240)
.+++|+++|..|++|+.||++|||+.. ....+.....|.+.|.++.|+|+ |++|++.+.| ..+||+.+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-----s~~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g-- 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-----SMLTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTG-- 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-----cchhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccC--
Confidence 679999999999999999999999976 34556666678999999999999 9999999999 8999999876
Q ss_pred CCcccEEEEEee--eccccEEeEEEeecCCC----cEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 93 QPLQWKLCKSFE--STSTQVLDVQFGVSSTS----LKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~----~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
.+++... ........+.|+. ++ .++ +....-+.|+.|++..-......... +.......++
T Consensus 218 -----~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~-~~~~~~~siS---- 285 (398)
T KOG0771|consen 218 -----AALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR-KKIKRFKSIS---- 285 (398)
T ss_pred -----chhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchh-hhhhccCcce----
Confidence 3333322 2223345566765 43 223 33334466778777541000000111 1111122233
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++-++++. ++|.|+.| |.|-||+..+-+... . ..+.|...|+.|.|+||.+
T Consensus 286 ------sl~VS~dGk-----f~AlGT~d-----GsVai~~~~~lq~~~-~-----vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 286 ------SLAVSDDGK-----FLALGTMD-----GSVAIYDAKSLQRLQ-Y-----VKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred ------eEEEcCCCc-----EEEEeccC-----CcEEEEEeceeeeeE-e-----ehhhheeeeeeEEEcCCcC
Confidence 888999998 99999998 999999987644221 1 2235888999999999975
No 160
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=5.8e-19 Score=144.21 Aligned_cols=118 Identities=15% Similarity=0.264 Sum_probs=108.3
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.+.|.+|-++|.|+.|+..|.++++|+.|..++||... +..++....+|.+.|+.++.+.. ..++++++.|..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-----t~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-----TARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-----chhhhccCCCCccccchhccchh--hhhhhhcccCce
Confidence 35688899999999999999999999999999999987 77899999999999999999877 788999999999
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
|++|.+..+ .++..+.+|++.|++++|+| ..+.+.||++++||.+
T Consensus 256 IrvWrl~~~-------~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 256 IRVWRLPDG-------APVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR 300 (1113)
T ss_pred EEEEecCCC-------chHHHHhccccceeeeccCc------cccCCCCCceEecccc
Confidence 999999877 88999999999999999999 3477889999999987
No 161
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.74 E-value=2e-17 Score=129.52 Aligned_cols=173 Identities=15% Similarity=0.281 Sum_probs=133.3
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
++.+..|.++|.+-+|+|+|.-|++.++||.|+||...+. +..++.-...+|+|++|.|+ ++-++-+ ..+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------LRStl~Q~~~~v~c~~W~p~--S~~vl~c-~g~h 167 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------LRSTVVQNEESIRCARWAPN--SNSIVFC-QGGH 167 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------HHHHHhhcCceeEEEEECCC--CCceEEe-cCCe
Confidence 3557889999999999999999999999999999987632 33334445678999999998 5544433 2346
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
+.|--+... ..+-..+.|.+-|.++.|+| ...++++|+.|-..++||.. +.....-..|..++.
T Consensus 168 ~~IKpL~~n-------~k~i~WkAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 168 ISIKPLAAN-------SKIIRWRAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAIT 231 (737)
T ss_pred EEEeecccc-------cceeEEeccCcEEEEeecCc--cccceeecCCceeEEeeccc-------CcccccCChhcccee
Confidence 666666544 55667788999999999999 88899999999999999976 355555567777777
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+++|+|+. .++.++. ++.|+ .. ...+.|..++|||||.
T Consensus 232 ----------Sva~npd~------~~~v~S~------nt~R~---~~---------------p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 232 ----------SVAFNPEK------DYLLWSY------NTARF---SS---------------PRVGSIFNLSWSADGT 269 (737)
T ss_pred ----------eeeecccc------ceeeeee------eeeee---cC---------------CCccceEEEEEcCCCc
Confidence 99999994 6888887 56661 11 1334899999999984
No 162
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.1e-16 Score=118.04 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=138.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+++.|+..|+++.|+|..++|++|+.|..-+||.....+ ++++...+..++..++++.|+|. ++.|++|+....|
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~--~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~i 124 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG--TWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLI 124 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC--eeccceeEEEeccceeeEeecCc--CceEEeccCccEE
Confidence 4578899999999999999999999999999999984333 88888888889999999999999 9999999999999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC------c------ccccceeEE
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD------P------LILKNWQLQ 150 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~------~------~~~~~~~~~ 150 (240)
.+|-++..+ .-|.....-+..++.|.+++|+| ++-+|++|+.|+.++++..-- + ....-+++.
T Consensus 125 sVcy~E~EN---dWWVsKhikkPirStv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm 199 (361)
T KOG1523|consen 125 SVCYYEQEN---DWWVSKHIKKPIRSTVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM 199 (361)
T ss_pred EEEEEeccc---ceehhhhhCCccccceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence 999987652 22233333345678899999999 999999999999999997421 0 001112222
Q ss_pred eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.++....+ .+..+.|+|++. .|+-.+.| ..+.+=|.....
T Consensus 200 ~E~~~~gg----------wvh~v~fs~sG~-----~lawv~Hd-----s~v~~~da~~p~ 239 (361)
T KOG1523|consen 200 SEASSSGG----------WVHGVLFSPSGN-----RLAWVGHD-----STVSFVDAAGPS 239 (361)
T ss_pred HhhccCCC----------ceeeeEeCCCCC-----EeeEecCC-----CceEEeecCCCc
Confidence 22222222 344999999998 89999999 999998876653
No 163
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=123.16 Aligned_cols=204 Identities=10% Similarity=0.034 Sum_probs=144.1
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-CCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS-SSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
|.+.+|.+.|+++.|+.++++||+|+.|..+++|++...- ..+.+++.... .|...|.++.|... ...+.+|..++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCcc
Confidence 5588999999999999999999999999999999986310 00223444333 35678999999887 78899999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
+|.+.|+.+. +.+..+. ...+.|..+..+| ..+.|++.+.++.|.+||.+...+....-+. .....
T Consensus 128 ~VI~HDiEt~-------qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~~~ 195 (609)
T KOG4227|consen 128 TVIKHDIETK-------QSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANSGK 195 (609)
T ss_pred eeEeeecccc-------eeeeeecccCcccceeecccCC--CCceEEEEecCceEEEEeccCCCCCCceeee---cCCCc
Confidence 9999999876 4454443 3457899999999 7788999999999999999974333222221 11222
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
... .+.|+|... .+|++++.. +-+.+||.+.............+.......-..+-|+|+|
T Consensus 196 ~F~----------t~~F~P~~P----~Li~~~~~~-----~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 196 NFY----------TAEFHPETP----ALILVNSET-----GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred cce----------eeeecCCCc----eeEEecccc-----CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 223 788999885 389999988 9999999987554322111111111111123567888887
Q ss_pred C
Q 026295 239 G 239 (240)
Q Consensus 239 ~ 239 (240)
.
T Consensus 257 ~ 257 (609)
T KOG4227|consen 257 N 257 (609)
T ss_pred C
Confidence 4
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=5.4e-17 Score=130.26 Aligned_cols=175 Identities=14% Similarity=0.240 Sum_probs=133.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE 90 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 90 (240)
.|..++|-|||..|+.+.. ..+.|||.. .+..+.++++|...|++++|+.+ |..|++|+.|..|.+|...-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~n-----dG~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTS-----DGTLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCC-----CcccccccccccceEEEEEEccC--CceeccCCCceeEEEecccc-
Confidence 7999999999988877755 478899998 66789999999999999999999 99999999999999999743
Q ss_pred cCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295 91 DAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (240)
...++ .|...|.++.|+| -...|++++... .-+|...+ +.+. .+... +-
T Consensus 85 ---------EG~LkYSH~D~IQCMsFNP--~~h~LasCsLsd-FglWS~~q-------K~V~---K~kss--------~R 134 (1081)
T KOG1538|consen 85 ---------EGILKYSHNDAIQCMSFNP--ITHQLASCSLSD-FGLWSPEQ-------KSVS---KHKSS--------SR 134 (1081)
T ss_pred ---------cceeeeccCCeeeEeecCc--hHHHhhhcchhh-ccccChhh-------hhHH---hhhhh--------ee
Confidence 22222 4789999999999 778889888653 56887654 1111 11111 11
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+.+.+|..++. +|+.|..+ |+|.|-+-..+. ...+.-+.|-.++|++++|+|+.|
T Consensus 135 ~~~CsWtnDGq-----ylalG~~n-----GTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 135 IICCSWTNDGQ-----YLALGMFN-----GTISIRNKNGEE-----KVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred EEEeeecCCCc-----EEEEeccC-----ceEEeecCCCCc-----ceEEeCCCCCCCCceEEEecCCCC
Confidence 23788999988 99999999 999997543322 122333445667999999999875
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=2.3e-16 Score=126.65 Aligned_cols=201 Identities=14% Similarity=0.242 Sum_probs=152.6
Q ss_pred chhcccccceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCC----------------CCcEEEEeE----------ee
Q 026295 3 KAVATLDKGTTSSSWNYCGQ---RLATGSTDGTLSIFDSPDPS----------------SSSFTCNLK----------TK 53 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~---~l~~~~~d~~i~iw~~~~~~----------------~~~~~~~~~----------~~ 53 (240)
..+.+|++.|.+++|...+. +||++|.|..||||.+...+ ......... +.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 35789999999999988654 89999999999999875332 001122212 24
Q ss_pred ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE---EeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295 54 VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK---SFESTSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 54 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
+|+.-|+++.|.|. +..|++++.|.++.+|......+ -|.... .+.+.........|+| +++.+++-+.-
T Consensus 265 GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tG---iWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~ 337 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTG---IWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRT 337 (764)
T ss_pred CcccceEEEEEccc--hhhheecccCcceEEEecCCccc---eEEEEEEeecccccccceeeEEEcC--CCCEEEEeccc
Confidence 89999999999999 88899999999999998765432 344332 2333445688899999 89999999999
Q ss_pred CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|-.++|.... ...|.....+.+|...|. ++.|+|.+. +|++.+.| .+-|+|-.-..+
T Consensus 338 Gg~hlWkt~d---~~~w~~~~~iSGH~~~V~----------dv~W~psGe-----flLsvs~D-----QTTRlFa~wg~q 394 (764)
T KOG1063|consen 338 GGFHLWKTKD---KTFWTQEPVISGHVDGVK----------DVDWDPSGE-----FLLSVSLD-----QTTRLFARWGRQ 394 (764)
T ss_pred CcEEEEeccC---ccceeeccccccccccce----------eeeecCCCC-----EEEEeccc-----cceeeecccccc
Confidence 9999998433 234666667778888887 999999998 99999999 999998766555
Q ss_pred CCcceeEeeecCCCCCCceEEEEEec
Q 026295 211 NRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
..|..... +.-|+..++|++|-+
T Consensus 395 ~~wHEiaR---PQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 395 QEWHEIAR---PQIHGYDLTCLSFVN 417 (764)
T ss_pred cceeeecc---cccccccceeeehcc
Confidence 55555443 334777999999987
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=1.5e-16 Score=122.14 Aligned_cols=169 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+..|...|.++.|+|.. ..+.+.++||+|++=|++.. ..+.+..+..-.....++.|+.. ...++.+..=|.+.
T Consensus 230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~---i~e~v~s~~~d~~~fs~~d~~~e--~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN---ISEEVLSLDTDNIWFSSLDFSAE--SRSVLFGDNVGNFN 304 (498)
T ss_pred eccCCccccceEecCCChhheeeeccCceeeeeeecch---hhHHHhhcCccceeeeeccccCC--CccEEEeecccceE
Confidence 55688899999999955 68999999999999999854 33344444333445677888776 56666776667999
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+||++... .....+..|...|.+|+++|. ...+|++++.|++++|||++.-..-.. +......|...|.
T Consensus 305 ~iD~R~~~------s~~~~~~lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~-- 373 (498)
T KOG4328|consen 305 VIDLRTDG------SEYENLRLHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVN-- 373 (498)
T ss_pred EEEeecCC------ccchhhhhhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCC--cceecccccceee--
Confidence 99998764 234445567789999999995 445799999999999999986322211 1122234555554
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
+..|+|.+. .|+|-+.| ..|+|||..
T Consensus 374 --------sAyFSPs~g-----tl~TT~~D-----~~IRv~dss 399 (498)
T KOG4328|consen 374 --------SAYFSPSGG-----TLLTTCQD-----NEIRVFDSS 399 (498)
T ss_pred --------eeEEcCCCC-----ceEeeccC-----CceEEeecc
Confidence 899999997 58888888 999999985
No 167
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=9e-15 Score=113.14 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=120.0
Q ss_pred ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEEee
Q 026295 11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWEEI 88 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~ 88 (240)
.+..++|+|+++.++++ +.++.|++||+. +.+.+..+.. ...+..++|+|+ +.+++++..++ .+.+||..
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-----~~~~~~~~~~-~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIE-----TRKVLAEIPV-GVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECC-----CCeEEeEeeC-CCCcceEEECCC--CCEEEEEecCCCeEEEEeCC
Confidence 35678999999877554 568999999998 4455555543 345678999999 99998887765 46777876
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
.. +....... ......++|+| ++.+|+++ ..++.|++||+.+ .+....+..+...+.+..
T Consensus 146 ~~-------~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~~--- 206 (300)
T TIGR03866 146 TY-------EIVDNVLV-DQRPRFAEFTA--DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEIPGVHPEA--- 206 (300)
T ss_pred CC-------eEEEEEEc-CCCccEEEECC--CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeeccccccccc---
Confidence 54 44433332 23456789998 88877554 4689999999987 344433322111111000
Q ss_pred ceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 168 CISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.....++|+|++. +++++ +.+ +.|.+||..+.. ....+. +...+.+++|+|++.
T Consensus 207 ~~~~~i~~s~dg~-----~~~~~~~~~-----~~i~v~d~~~~~----~~~~~~----~~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 207 VQPVGIKLTKDGK-----TAFVALGPA-----NRVAVVDAKTYE----VLDYLL----VGQRVWQLAFTPDEK 261 (300)
T ss_pred CCccceEECCCCC-----EEEEEcCCC-----CeEEEEECCCCc----EEEEEE----eCCCcceEEECCCCC
Confidence 0112678999987 54444 344 789999986543 222222 233789999999985
No 168
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=1.4e-15 Score=112.53 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=124.6
Q ss_pred chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---eecCccEEEEEEcCCCCCCEEEEEec
Q 026295 3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---KVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
+.+.+|...|+.+.|.|+. +++++|+.|.+||+|+++ +..++..+ .+|.+.|.++.|+++ |.++++++.
T Consensus 129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-----~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGm 201 (385)
T KOG1034|consen 129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-----TDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGM 201 (385)
T ss_pred cceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-----CCeEEEEecccccccCcEEEEEEcCC--CCeeeccCC
Confidence 4578899999999999976 799999999999999999 66777766 479999999999999 999999999
Q ss_pred CCeEEEEEeeeccC------------------------------------------------------C--CcccE----
Q 026295 79 DGSLLLWEEIVEDA------------------------------------------------------Q--PLQWK---- 98 (240)
Q Consensus 79 d~~v~iwd~~~~~~------------------------------------------------------~--~~~~~---- 98 (240)
|.++++|++...+- + -.-|+
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKL 281 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchh
Confidence 99999999762100 0 00011
Q ss_pred ---------------EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 99 ---------------LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 99 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
.+..+.-....|+-+.|.-..-+..||.|...|.|.+||++...+....++.... ....|
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tV--- 356 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTV--- 356 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--cccee---
Confidence 1122222334455555543225678999999999999999875443222222211 12223
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
...+|+.++. +|+...+| +.|.-||..
T Consensus 357 -------RQ~sfS~dgs-----~lv~vcdd-----~~Vwrwdrv 383 (385)
T KOG1034|consen 357 -------RQTSFSRDGS-----ILVLVCDD-----GTVWRWDRV 383 (385)
T ss_pred -------eeeeecccCc-----EEEEEeCC-----CcEEEEEee
Confidence 3778999986 66666666 999888864
No 169
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.70 E-value=1e-14 Score=112.85 Aligned_cols=183 Identities=7% Similarity=-0.011 Sum_probs=120.1
Q ss_pred cceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCeEEEEEe
Q 026295 10 KGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGSLLLWEE 87 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd~ 87 (240)
..+.+++|+|+++.+ ++++.++.|++||.. +.+.+..+..+.. +..+.|+|+ ++.+++ +..++.+++||+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLA-----TGEVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDI 102 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECC-----CCcEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEEC
Confidence 347789999999876 567788999999998 4455555554433 567899998 886655 456899999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
... +.+..+.. ...+..++|+| ++.+++++..++ .+.+||..+ .+....+.... ..
T Consensus 103 ~~~-------~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~~~~-~~------ 159 (300)
T TIGR03866 103 ETR-------KVLAEIPV-GVEPEGMAVSP--DGKIVVNTSETTNMAHFIDTKT------YEIVDNVLVDQ-RP------ 159 (300)
T ss_pred CCC-------eEEeEeeC-CCCcceEEECC--CCCEEEEEecCCCeEEEEeCCC------CeEEEEEEcCC-Cc------
Confidence 765 55555543 23467899999 999888888765 466778765 33332221111 11
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC--CCceEEEEEecCCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR--SDEVYAVAWALNIG 239 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~ 239 (240)
..++|+|++. +|++++ .+ +.|++||+.+........ +.....+ ......++|+||+.
T Consensus 160 ----~~~~~s~dg~-----~l~~~~~~~-----~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 160 ----RFAEFTADGK-----ELWVSSEIG-----GTVSVIDVATRKVIKKIT--FEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred ----cEEEECCCCC-----EEEEEcCCC-----CEEEEEEcCcceeeeeee--ecccccccccCCccceEECCCCC
Confidence 2788999986 565554 46 999999998764322111 1110001 11235688888874
No 170
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=6.4e-15 Score=114.78 Aligned_cols=189 Identities=13% Similarity=0.146 Sum_probs=135.1
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
.+.|.+....++.+|+.++|+|++.|+.+++|+-. ++.-+.. -..++.++.|.|. | .++.|...|.-.+
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~-~~d~~~~~~fhps--g-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI-IEDPAECADFHPS--G-VVAVGTATGRWFV 432 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEccCC-------ceeEEEE-ecCceeEeeccCc--c-eEEEeeccceEEE
Confidence 56788999999999999999999999999999933 2222222 2567889999998 8 8999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.|.++. ..+..-.. ..++..+.|+| +|.+||.|+.|+.|.+|-+...... ....... +..++.
T Consensus 433 ~d~e~~-------~lv~~~~d-~~~ls~v~ysp--~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~--~gs~it--- 495 (626)
T KOG2106|consen 433 LDTETQ-------DLVTIHTD-NEQLSVVRYSP--DGAFLAVGSHDNHIYIYRVSANGRK--YSRVGKC--SGSPIT--- 495 (626)
T ss_pred Eecccc-------eeEEEEec-CCceEEEEEcC--CCCEEEEecCCCeEEEEEECCCCcE--EEEeeee--cCceeE---
Confidence 998774 44444444 78999999999 9999999999999999998754221 1111111 112333
Q ss_pred cccceeeeEEEeCCCCC-------------------------------------------------------CCCceEEE
Q 026295 165 KASCISASISWNPQKGE-------------------------------------------------------NQGSSFVL 189 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~-------------------------------------------------------~~~~~l~~ 189 (240)
.+.|++++.. ....++|+
T Consensus 496 -------hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~ 568 (626)
T KOG2106|consen 496 -------HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS 568 (626)
T ss_pred -------EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence 4444444432 34456777
Q ss_pred EecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 190 ~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
|... |+|++|...-.+.+. .. ....+|+..|++|+|.-+
T Consensus 569 gdd~-----g~v~lf~yPc~s~rA-~~---he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 569 GDDF-----GKVHLFSYPCSSPRA-PS---HEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred cccC-----ceEEEEccccCCCcc-cc---eeeccccceeEEEEEeeC
Confidence 7766 999999876544322 22 233478889999999754
No 171
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=8.9e-16 Score=112.58 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=111.9
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
.+..|.++|.|+.+++....+++|+.|++|++||.... .....+. ....|.++.. . ++.|+.|+.|..|.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----~~~~~~d-~~kkVy~~~v--~--g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----VVVGTFD-QGKKVYCMDV--S--GNRLVVGTSDRKVL 158 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----ccccccc-cCceEEEEec--c--CCEEEEeecCceEE
Confidence 36779999999999998889999999999999999832 2333333 2446777765 2 56777888888888
Q ss_pred EEEeeeccCCC----ccc-------------------------------------EEEEEeeecc---------ccEEeE
Q 026295 84 LWEEIVEDAQP----LQW-------------------------------------KLCKSFESTS---------TQVLDV 113 (240)
Q Consensus 84 iwd~~~~~~~~----~~~-------------------------------------~~~~~~~~~~---------~~v~~~ 113 (240)
+||+++.+... ..+ .....|+.|. -+|.+|
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 88877543210 000 0112233332 368899
Q ss_pred EEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEec
Q 026295 114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN 192 (240)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~ 192 (240)
+|+| -...|++|+.||.|.+||+.. .+.+.++......|. +++|+.++. .||+|++
T Consensus 239 ~Fhp--~~~tfaTgGsDG~V~~Wd~~~------rKrl~q~~~~~~SI~----------slsfs~dG~-----~LAia~s 294 (323)
T KOG1036|consen 239 AFHP--IHGTFATGGSDGIVNIWDLFN------RKRLKQLAKYETSIS----------SLSFSMDGS-----LLAIASS 294 (323)
T ss_pred Eecc--ccceEEecCCCceEEEccCcc------hhhhhhccCCCCceE----------EEEeccCCC-----eEEEEec
Confidence 9999 777899999999999999976 344445544444455 899999998 8999975
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.3e-16 Score=121.99 Aligned_cols=177 Identities=20% Similarity=0.242 Sum_probs=136.7
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-----CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS-----SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
++..|.++|.|++..+++..+.+|+-||+|+.|++..+. +........+.||++.|+.+.+++. .+.|++++.
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~ 416 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSS 416 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecC
Confidence 367899999999999999999999999999999876321 1122456678899999999999998 888999999
Q ss_pred CCeEEEEEeeeccC--C--------C-----cccEE----------------------EEEeee-------ccccEEeEE
Q 026295 79 DGSLLLWEEIVEDA--Q--------P-----LQWKL----------------------CKSFES-------TSTQVLDVQ 114 (240)
Q Consensus 79 d~~v~iwd~~~~~~--~--------~-----~~~~~----------------------~~~~~~-------~~~~v~~~~ 114 (240)
||++++|+...... . . ..+++ +..+.. ....+..+.
T Consensus 417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 99999999765432 0 0 00000 001110 113455677
Q ss_pred EeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC
Q 026295 115 FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD 194 (240)
Q Consensus 115 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd 194 (240)
++| +..+.+++..|+.|+++|..+ +.++.....|...+. ++++.|++. +|++++.|
T Consensus 497 s~~--~~~~~~~~hed~~Ir~~dn~~------~~~l~s~~a~~~svt----------slai~~ng~-----~l~s~s~d- 552 (577)
T KOG0642|consen 497 SHP--TADITFTAHEDRSIRFFDNKT------GKILHSMVAHKDSVT----------SLAIDPNGP-----YLMSGSHD- 552 (577)
T ss_pred ecC--CCCeeEecccCCceecccccc------cccchheeeccceec----------ceeecCCCc-----eEEeecCC-
Confidence 777 778899999999999999988 677777777777666 999999998 99999999
Q ss_pred CCCCCeEEEEEeecCC
Q 026295 195 TPQLNSSKVWEFDEAH 210 (240)
Q Consensus 195 ~~~~~~i~iw~~~~~~ 210 (240)
+.+++|.+....
T Consensus 553 ----~sv~l~kld~k~ 564 (577)
T KOG0642|consen 553 ----GSVRLWKLDVKT 564 (577)
T ss_pred ----ceeehhhccchh
Confidence 999999987644
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=5.8e-16 Score=124.47 Aligned_cols=186 Identities=18% Similarity=0.283 Sum_probs=129.4
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+++++|.+.|.|++|+.+|+++|+|+.|+.|.||+....+ +.. ..|+..|.++.|+|- .+.+++++.. ..
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------~Lk-YSH~D~IQCMsFNP~--~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------ILK-YSHNDAIQCMSFNPI--THQLASCSLS-DF 116 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccc------eee-eccCCeeeEeecCch--HHHhhhcchh-hc
Confidence 5688999999999999999999999999999999876321 112 258999999999999 8889888753 46
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee---cccce
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ---NAIDS 159 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~~~~~ 159 (240)
-+|..... .+...+ ....|.+.+|.. +|++++.|-.||+|.+-+-.. +....+. +...+
T Consensus 117 glWS~~qK--------~V~K~k-ss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 117 GLWSPEQK--------SVSKHK-SSSRIICCSWTN--DGQYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSP 178 (1081)
T ss_pred cccChhhh--------hHHhhh-hheeEEEeeecC--CCcEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCC
Confidence 68887543 222222 235677888877 999999999999999875432 1111222 12222
Q ss_pred eeccccccceeeeEEEeCCCCC-----------------------------------------CCCceEEEEecCCCCCC
Q 026295 160 VTMFRKASCISASISWNPQKGE-----------------------------------------NQGSSFVLGFNSDTPQL 198 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~-----------------------------------------~~~~~l~~~~~dd~~~~ 198 (240)
|. +++|+|.... .++.+++.|++|
T Consensus 179 iw----------si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd----- 243 (1081)
T KOG1538|consen 179 IW----------SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD----- 243 (1081)
T ss_pred ce----------EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCC-----
Confidence 22 4555554433 344488899988
Q ss_pred CeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 199 NSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 199 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+.+++|....- ...++. ....+|+.|+-.|+++
T Consensus 244 k~L~~fTR~Gv-----rLGTvg---~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 244 KQLSLFTRDGV-----RLGTVG---EQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred CceEEEeecCe-----EEeecc---ccceeEEEEEEccCCc
Confidence 88988875431 222222 2334999999999874
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=3.3e-16 Score=118.43 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=106.7
Q ss_pred eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 50 LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 50 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
..+.+|+++|.++.|+|. ..+.+|+|+.|.+|.||++..+.-.-.-.+++..+.+|...|.-++|+|.. .+.|++++.
T Consensus 75 P~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~ 152 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGS 152 (472)
T ss_pred CCccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccC
Confidence 345699999999999997 357899999999999999854321111225678888999999999999953 346899999
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
|.+|.+||+.+ ++...++. |...+. +++|+-++. +|++.+.| .+|||||.+++
T Consensus 153 Dn~v~iWnv~t------geali~l~-hpd~i~----------S~sfn~dGs-----~l~TtckD-----KkvRv~dpr~~ 205 (472)
T KOG0303|consen 153 DNTVSIWNVGT------GEALITLD-HPDMVY----------SMSFNRDGS-----LLCTTCKD-----KKVRVIDPRRG 205 (472)
T ss_pred CceEEEEeccC------CceeeecC-CCCeEE----------EEEeccCCc-----eeeeeccc-----ceeEEEcCCCC
Confidence 99999999998 45444554 766666 999999998 89999999 99999999886
Q ss_pred C
Q 026295 210 H 210 (240)
Q Consensus 210 ~ 210 (240)
.
T Consensus 206 ~ 206 (472)
T KOG0303|consen 206 T 206 (472)
T ss_pred c
Confidence 5
No 175
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=1.6e-15 Score=122.80 Aligned_cols=170 Identities=14% Similarity=0.219 Sum_probs=136.7
Q ss_pred cchhcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295 2 DKAVATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
.+++-+|...|+++.|...| ..+++++.|+.|.+--..+...+......+-......++++...|. ..++++++.|
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQD 617 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQD 617 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC--cceEEEEecc
Confidence 45678899999999999887 7899999998875443333221111111111112356899999998 9999999999
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeee---ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
..|+||+++.+ +..+.|++ +.+..-.+...| .|.|+++.+.|.++.++|+-+ ++++.++.+|
T Consensus 618 rnirif~i~sg-------Kq~k~FKgs~~~eG~lIKv~lDP--SgiY~atScsdktl~~~Df~s------gEcvA~m~GH 682 (1080)
T KOG1408|consen 618 RNIRIFDIESG-------KQVKSFKGSRDHEGDLIKVILDP--SGIYLATSCSDKTLCFVDFVS------GECVAQMTGH 682 (1080)
T ss_pred cceEEEecccc-------ceeeeecccccCCCceEEEEECC--CccEEEEeecCCceEEEEecc------chhhhhhcCc
Confidence 99999999888 88888875 556677788888 999999999999999999988 7999999999
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
...|. .+.|.++.. .|++.+.| |.|.||.+..
T Consensus 683 sE~VT----------G~kF~nDCk-----HlISvsgD-----gCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 SEAVT----------GVKFLNDCK-----HLISVSGD-----GCIFVWKLPL 714 (1080)
T ss_pred chhee----------eeeecccch-----hheeecCC-----ceEEEEECch
Confidence 98888 899999998 78888888 9999999853
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=9.8e-15 Score=105.45 Aligned_cols=152 Identities=20% Similarity=0.356 Sum_probs=106.4
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEE--ecC
Q 026295 13 TSSSWNYCGQRLATGST----------DGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACI--CSD 79 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~--~~d 79 (240)
..+.|+++|++|+.-.. -+...||.++... .....+. ...++|.+++|+|+ |+.|+.. ..+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCCCceEEEEECcC--CCEEEEEEccCC
Confidence 35889999987665433 1345666664322 1222332 23467999999999 8877654 456
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
..|.+||++. +.+..+. ...+..+.|+| +|++|++++. .|.|.+||.++ .+.+......
T Consensus 83 ~~v~lyd~~~--------~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~------~~~i~~~~~~ 144 (194)
T PF08662_consen 83 AKVTLYDVKG--------KKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRK------KKKISTFEHS 144 (194)
T ss_pred cccEEEcCcc--------cEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCC------CEEeeccccC
Confidence 7999999963 6666665 35678899999 9999999874 36799999986 4555443221
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC-----CCCCCCeEEEEEeecC
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS-----DTPQLNSSKVWEFDEA 209 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d-----d~~~~~~i~iw~~~~~ 209 (240)
.+. .++|+|++. +|+++... | +.++||++...
T Consensus 145 --~~t----------~~~WsPdGr-----~~~ta~t~~r~~~d----ng~~Iw~~~G~ 181 (194)
T PF08662_consen 145 --DAT----------DVEWSPDGR-----YLATATTSPRLRVD----NGFKIWSFQGR 181 (194)
T ss_pred --cEE----------EEEEcCCCC-----EEEEEEeccceecc----ccEEEEEecCe
Confidence 122 899999998 88888752 2 89999998653
No 177
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=118.70 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=129.6
Q ss_pred cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC-----------Cc-E-----------EEEeEeeecCccEEEEEEc
Q 026295 10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS-----------SS-F-----------TCNLKTKVHAGAILKVVWV 65 (240)
Q Consensus 10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~-----------~~-~-----------~~~~~~~~h~~~v~~~~~~ 65 (240)
..|+|+.|-|-+ ..++.+-.+|.+.+||...... +. . .++..+..-++.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 579999999844 5677778889999997642210 00 0 1122223335678999999
Q ss_pred CCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc
Q 026295 66 PPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK 145 (240)
Q Consensus 66 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~ 145 (240)
|+ |.+||+.+.||.+||||+... +.+..++..-+...|++|+| ||+|+++|+.|--|.||.+..
T Consensus 300 ~D--G~~LA~VSqDGfLRvF~fdt~-------eLlg~mkSYFGGLLCvcWSP--DGKyIvtGGEDDLVtVwSf~e----- 363 (636)
T KOG2394|consen 300 PD--GKYLATVSQDGFLRIFDFDTQ-------ELLGVMKSYFGGLLCVCWSP--DGKYIVTGGEDDLVTVWSFEE----- 363 (636)
T ss_pred CC--CceEEEEecCceEEEeeccHH-------HHHHHHHhhccceEEEEEcC--CccEEEecCCcceEEEEEecc-----
Confidence 99 999999999999999999876 66777777778899999999 999999999999999999987
Q ss_pred ceeEEeeeecccceeeccccccceeeeEEEeCCCCC-------------------------------------------C
Q 026295 146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE-------------------------------------------N 182 (240)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~-------------------------------------------~ 182 (240)
..++..-++|..+|. .|+|+|.... .
T Consensus 364 -rRVVARGqGHkSWVs----------~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~ 432 (636)
T KOG2394|consen 364 -RRVVARGQGHKSWVS----------VVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS 432 (636)
T ss_pred -ceEEEecccccccee----------eEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence 677777778888887 7777752211 1
Q ss_pred CCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 183 QGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 183 ~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
..+.|.+.+.| ..+.+||+...
T Consensus 433 v~YRfGSVGqD-----TqlcLWDlteD 454 (636)
T KOG2394|consen 433 VTYRFGSVGQD-----TQLCLWDLTED 454 (636)
T ss_pred eEEEeeccccc-----ceEEEEecchh
Confidence 34577888888 99999999764
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=3.4e-15 Score=108.94 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=137.2
Q ss_pred cccccceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-----eecCccEEEEEEcCCCCCCEEEE
Q 026295 6 ATLDKGTTSSSWNYCG-----QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-----KVHAGAILKVVWVPPEFGDAVAC 75 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~-----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s 75 (240)
..|.-+++.+-|.|+. ++|||.+. .+|+|.+..... ...+...+ ..+.+++++..|+.- ..+++.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~-~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igt 168 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEES-RVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGT 168 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCC-ceehhhhhccCcccccCCcccccccccC-CcceeEe
Confidence 3577789999999976 36777654 899999874211 22222222 245678999999764 3688999
Q ss_pred EecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee-
Q 026295 76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ- 154 (240)
Q Consensus 76 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~- 154 (240)
++-|.+..|||++.+ .......++-.|...|..++|.. ..-..|++++.||.|++||++. .+....+-
T Consensus 169 SSiDTTCTiWdie~~----~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~------leHSTIIYE 237 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETG----VSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRS------LEHSTIIYE 237 (364)
T ss_pred ecccCeEEEEEEeec----cccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecc------cccceEEec
Confidence 999999999999875 11245666778999999999986 1235799999999999999996 22111111
Q ss_pred cc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295 155 NA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV 232 (240)
Q Consensus 155 ~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v 232 (240)
.. ..+.- .++|++.... ++|+-.+|. ..|.|-|++... ..+.+|. +|.+.|+.+
T Consensus 238 ~p~~~~pLl----------RLswnkqDpn----ymATf~~dS----~~V~iLDiR~P~---tpva~L~---~H~a~VNgI 293 (364)
T KOG0290|consen 238 DPSPSTPLL----------RLSWNKQDPN----YMATFAMDS----NKVVILDIRVPC---TPVARLR---NHQASVNGI 293 (364)
T ss_pred CCCCCCcce----------eeccCcCCch----HHhhhhcCC----ceEEEEEecCCC---cceehhh---cCcccccce
Confidence 11 12222 6888887753 888887775 899999998754 2344444 688899999
Q ss_pred EEecCC
Q 026295 233 AWALNI 238 (240)
Q Consensus 233 ~~sp~~ 238 (240)
+|.|-.
T Consensus 294 aWaPhS 299 (364)
T KOG0290|consen 294 AWAPHS 299 (364)
T ss_pred EecCCC
Confidence 999965
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=109.73 Aligned_cols=208 Identities=14% Similarity=0.115 Sum_probs=128.6
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
|++|.+.|+++.|..+++ |.+|..-|.|++|++. +.+.+..++ .+...|+.+.-.|. ..+.+-+.|+.+.
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq-----t~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ-----TERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI 80 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEee-----cCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence 568899999999988775 8899999999999998 445566666 56677888887674 5577888999999
Q ss_pred EEEeeecc----------------------CCCcccEEEE--------------------Eee----eccccEEeEEEee
Q 026295 84 LWEEIVED----------------------AQPLQWKLCK--------------------SFE----STSTQVLDVQFGV 117 (240)
Q Consensus 84 iwd~~~~~----------------------~~~~~~~~~~--------------------~~~----~~~~~v~~~~~~~ 117 (240)
+|++.... +...+|.... ... ...+.+.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 99965410 0000000000 000 0123344444321
Q ss_pred cCCC--cEEEEEeCCCcEEEEEecCcccc----cceeEEeeeecccceeec--------cccc-----------------
Q 026295 118 SSTS--LKLVAAYSDGHVKVYELLDPLIL----KNWQLQAEFQNAIDSVTM--------FRKA----------------- 166 (240)
Q Consensus 118 ~~~~--~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~~~~~v~~--------~~~~----------------- 166 (240)
..+ .++++|..+|.|.+||+.+.... ..++.+.....|..++.. .|..
T Consensus 161 -~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 161 -ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred -cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 122 35778889999999999873110 011111111222222210 0000
Q ss_pred -----------cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 167 -----------SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 167 -----------~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
-+.++.+...|++. +||+++.| +.||||..++..... ....|++.|++|+|+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~K-----IlATAGWD-----~RiRVyswrtl~pLA-------VLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGK-----ILATAGWD-----HRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFS 302 (323)
T ss_pred cccccceEEecCCCccceEEccCCc-----EEeecccC-----CcEEEEEeccCCchh-------hhhhhhcceeEEEeC
Confidence 11334555555555 99999999 999999998855332 223588899999999
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
||.+
T Consensus 303 pd~~ 306 (323)
T KOG0322|consen 303 PDCE 306 (323)
T ss_pred CCCc
Confidence 9964
No 180
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=111.97 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=107.6
Q ss_pred EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC-------------------Cccc----------EE
Q 026295 49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-------------------PLQW----------KL 99 (240)
Q Consensus 49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-------------------~~~~----------~~ 99 (240)
+..+++|...|++++|+.+ |.+|++++.|+.|++|+++.-... .+.. ..
T Consensus 79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 4567899999999999999 999999999999999996531100 0000 00
Q ss_pred EEEee-----------------------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 100 CKSFE-----------------------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 100 ~~~~~-----------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
+..+. .|.-.+-.+-.. .++.++++++.|..|.+|+++ +++...+...
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-------Gq~L~~idtn 227 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-------GQLLQSIDTN 227 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-------Cceeeeeccc
Confidence 11110 122223333333 377899999999999999998 3555555443
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-CCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-AHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
..... ..+.+|++. ++++++.. .-|++|..-- ....++.+...-...||.+.|..++||
T Consensus 228 q~~n~----------~aavSP~GR-----Fia~~gFT-----pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 228 QSSNY----------DAAVSPDGR-----FIAVSGFT-----PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred ccccc----------ceeeCCCCc-----EEEEecCC-----CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence 33222 567899987 88888777 7899999732 222333333333345899999999999
Q ss_pred cCCCC
Q 026295 236 LNIGR 240 (240)
Q Consensus 236 p~~~~ 240 (240)
|+..|
T Consensus 288 n~S~r 292 (420)
T KOG2096|consen 288 NSSTR 292 (420)
T ss_pred CCcce
Confidence 99865
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=4.7e-14 Score=106.01 Aligned_cols=157 Identities=14% Similarity=0.217 Sum_probs=122.2
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---cCccEEEEEEcCCCCCCEEEEE--ecCCeEEE
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---HAGAILKVVWVPPEFGDAVACI--CSDGSLLL 84 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~--~~d~~v~i 84 (240)
..|.+++++ .++|+++-++ .|.|||+. ..+++.++.. +...+.+++.++. +.+++-- ...|.|.+
T Consensus 88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~-----~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEE-SIYIYDIK-----DMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEEc--cceEEEEEcc-cEEEEecc-----cceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEE
Confidence 356666665 4677777775 49999999 6677777763 3444666666555 7787753 33689999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE-EEEEecCcccccceeEEeeeecccceeecc
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
||..+. ++...+..|++.+-+++|++ +|.+||+++..|+| ||+.+.+ ++...+|.....
T Consensus 158 ~d~~nl-------~~v~~I~aH~~~lAalafs~--~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~----- 217 (391)
T KOG2110|consen 158 FDTINL-------QPVNTINAHKGPLAALAFSP--DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTY----- 217 (391)
T ss_pred EEcccc-------eeeeEEEecCCceeEEEECC--CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCce-----
Confidence 999877 88999999999999999999 99999999999985 8999977 677777765433
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
.+.+.+++|+|+.. +|++.+.. ++|+||.++..
T Consensus 218 ---~~~IySL~Fs~ds~-----~L~~sS~T-----eTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 ---PVSIYSLSFSPDSQ-----FLAASSNT-----ETVHIFKLEKV 250 (391)
T ss_pred ---eeEEEEEEECCCCC-----eEEEecCC-----CeEEEEEeccc
Confidence 23456999999997 78888877 99999999754
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=9.4e-14 Score=111.52 Aligned_cols=185 Identities=21% Similarity=0.345 Sum_probs=137.3
Q ss_pred hhcccccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCe
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGS 81 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~ 81 (240)
.+..|...|..++|+|+++.+++++. |+.+++|+.. ....+..+.+|...|.++.|+|. +. ++++++.|+.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~ 222 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-----TGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGT 222 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-----CCceEEeeccCCCceEEEEEcCC--cceEEEEecCCCc
Confidence 46678899999999999999999886 9999999998 44567777789999999999987 76 5666689999
Q ss_pred EEEEEeeeccCCCcccEEEE-EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 82 LLLWEEIVEDAQPLQWKLCK-SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
|++||...+ .... .+..|.... ...|+| ++.++++++.|+.+++|+.+.... ....+..|...+
T Consensus 223 i~~wd~~~~-------~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v 287 (466)
T COG2319 223 IRLWDLSTG-------KLLRSTLSGHSDSV-VSSFSP--DGSLLASGSSDGTIRLWDLRSSSS-----LLRTLSGHSSSV 287 (466)
T ss_pred EEEEECCCC-------cEEeeecCCCCcce-eEeECC--CCCEEEEecCCCcEEEeeecCCCc-----EEEEEecCCccE
Confidence 999987643 4555 566666664 338888 777888999999999999986322 122223344444
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
. ++.|.|... .+++++.| +.+.+|+........... ...|...|..+.|.
T Consensus 288 ~----------~~~~~~~~~-----~~~~~~~d-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 337 (466)
T COG2319 288 L----------SVAFSPDGK-----LLASGSSD-----GTVRLWDLETGKLLSSLT-----LKGHEGPVSSLSFS 337 (466)
T ss_pred E----------EEEECCCCC-----EEEEeeCC-----CcEEEEEcCCCceEEEee-----ecccCCceEEEEEC
Confidence 4 789999655 67778777 889999776544222221 12466678999883
No 183
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.2e-15 Score=119.66 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=103.2
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
++.|+.++|+|||++||+.+.||.+||||.. +.+++..++..-+...+++|+|+ |+++++|+.|-.|.||.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----t~eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----TQELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeecc-----HHHHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEec
Confidence 4578999999999999999999999999998 66677777777788999999999 9999999999999999998
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeec---------------------------------CCC-------------c
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVS---------------------------------STS-------------L 122 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~-------------~ 122 (240)
.. +.+..-++|..+|..|+|+|- .++ .
T Consensus 363 er-------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~Y 435 (636)
T KOG2394|consen 363 ER-------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTY 435 (636)
T ss_pred cc-------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEE
Confidence 77 888888999999999999831 011 2
Q ss_pred EEEEEeCCCcEEEEEecCc
Q 026295 123 KLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 123 ~l~~~~~dg~v~iw~~~~~ 141 (240)
.|.+++.|-++.+||+..+
T Consensus 436 RfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 436 RFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred EeecccccceEEEEecchh
Confidence 4778889999999999753
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=8.4e-15 Score=111.16 Aligned_cols=152 Identities=17% Similarity=0.288 Sum_probs=119.1
Q ss_pred CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC--cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295 56 AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP--LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133 (240)
Q Consensus 56 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 133 (240)
..+|.++.|.+. ....+++|+.|..|++|.+....+.+ ...+-+..+..|...|+.+.|+| +|.+|++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceE
Confidence 357999999777 23389999999999999998765543 35566777788999999999999 99999999999999
Q ss_pred EEEEec--------Cccc--ccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295 134 KVYELL--------DPLI--LKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 203 (240)
Q Consensus 134 ~iw~~~--------~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i 203 (240)
.+|... +..+ ...|.....+..|...+- .++|+|++. ++++++.| +.+++
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy----------dL~Ws~d~~-----~l~s~s~d-----ns~~l 149 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY----------DLAWSPDSN-----FLVSGSVD-----NSVRL 149 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchh----------hhhccCCCc-----eeeeeecc-----ceEEE
Confidence 999876 1111 123555556666666555 899999998 89999999 99999
Q ss_pred EEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 204 WEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 204 w~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
||+..+. +... ..+|...|.-++|.|-
T Consensus 150 ~Dv~~G~----l~~~---~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 150 WDVHAGQ----LLAI---LDDHEHYVQGVAWDPL 176 (434)
T ss_pred EEeccce----eEee---ccccccccceeecchh
Confidence 9999865 3232 3367779999999884
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.64 E-value=3.6e-15 Score=119.35 Aligned_cols=166 Identities=15% Similarity=0.268 Sum_probs=129.6
Q ss_pred ECCCCCEEEE--EeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC
Q 026295 17 WNYCGQRLAT--GSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP 94 (240)
Q Consensus 17 ~s~~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 94 (240)
|..+..++|. .+..|.|-||++..++.-.-..+..+. ....|+++.|.|- +.+.|+.++.||.|++|.+..+....
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCc
Confidence 3444555555 355689999999876421111222332 3567999999986 36789999999999999998776655
Q ss_pred cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEE
Q 026295 95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS 174 (240)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ 174 (240)
....+...+..|...|+++.|+|-. ...|++++.|-+|++||++. ......+.+|...|- .++
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~------~~~~~~l~gHtdqIf----------~~A 727 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLAN------AKLYSRLVGHTDQIF----------GIA 727 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhh------hhhhheeccCcCcee----------EEE
Confidence 5667778888899999999999842 34589999999999999997 566778889988887 999
Q ss_pred EeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 175 WNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 175 ~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
|+|++. .+|+-+-| |+|++|+.+....
T Consensus 728 WSpdGr-----~~AtVcKD-----g~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 728 WSPDGR-----RIATVCKD-----GTLRVYEPRSREQ 754 (1012)
T ss_pred ECCCCc-----ceeeeecC-----ceEEEeCCCCCCC
Confidence 999998 89999999 9999999877543
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=1.6e-14 Score=117.91 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=130.5
Q ss_pred ccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEE-EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 9 DKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFT-CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 9 ~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
...|+|+.|+| +..++|.|..+|.|.+||+......... .......|..++..+.|..+..+.-|++++.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45899999999 5678999999999999999865321011 122234689999999998773345589999999999998
Q ss_pred eeeccC-----------------------------------------CC---------------cccEEEEEeeeccccE
Q 026295 87 EIVEDA-----------------------------------------QP---------------LQWKLCKSFESTSTQV 110 (240)
Q Consensus 87 ~~~~~~-----------------------------------------~~---------------~~~~~~~~~~~~~~~v 110 (240)
++.... .+ ..++....+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 653211 00 0011122334466888
Q ss_pred EeEEEeecCCCcE-EEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEE
Q 026295 111 LDVQFGVSSTSLK-LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL 189 (240)
Q Consensus 111 ~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~ 189 (240)
.++.++| =+.. +++++ |-+|+||..... ..++..+......+. +++|+|.... +|++
T Consensus 402 ~~v~~nP--F~~k~fls~g-DW~vriWs~~~~-----~~Pl~~~~~~~~~v~----------~vaWSptrpa----vF~~ 459 (555)
T KOG1587|consen 402 YAVSRNP--FYPKNFLSVG-DWTVRIWSEDVI-----ASPLLSLDSSPDYVT----------DVAWSPTRPA----VFAT 459 (555)
T ss_pred EeeecCC--Cccceeeeec-cceeEeccccCC-----CCcchhhhhccceee----------eeEEcCcCce----EEEE
Confidence 9999988 4433 44444 889999987621 222333333333344 8999999863 7888
Q ss_pred EecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 190 ~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
+..+ |.|.|||+............+ +....+.+.|++++
T Consensus 460 ~d~~-----G~l~iWDLl~~~~~Pv~s~~~-----~~~~l~~~~~s~~g 498 (555)
T KOG1587|consen 460 VDGD-----GNLDIWDLLQDDEEPVLSQKV-----CSPALTRVRWSPNG 498 (555)
T ss_pred EcCC-----CceehhhhhccccCCcccccc-----cccccceeecCCCC
Confidence 8888 999999997765443332221 23356777777755
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=5.3e-15 Score=106.57 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=118.9
Q ss_pred cceEEEEECC-CC--CEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 10 KGTTSSSWNY-CG--QRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 10 ~~v~~~~~s~-~~--~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+.++|..+.. ++ -+|++|-++|.+.+||+..... ..++.......|..+|.++.|.+. -..=++++.+..
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dk 228 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDK 228 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCcccc
Confidence 4677777544 23 2677888999999999984210 012333444579999999999766 344457777778
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
+..|.+....+ ..+...........|..+.+-| +++++|+++.|+.|+||+.++ ..+...++-|...+
T Consensus 229 l~~~Sl~~s~g---slq~~~e~~lknpGv~gvrIRp--D~KIlATAGWD~RiRVyswrt------l~pLAVLkyHsagv- 296 (323)
T KOG0322|consen 229 LVMYSLNHSTG---SLQIRKEITLKNPGVSGVRIRP--DGKILATAGWDHRIRVYSWRT------LNPLAVLKYHSAGV- 296 (323)
T ss_pred ceeeeeccccC---cccccceEEecCCCccceEEcc--CCcEEeecccCCcEEEEEecc------CCchhhhhhhhcce-
Confidence 88998865422 1122222333446788889988 999999999999999999998 56666666665544
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
++++|+|+.. ++|.|+.| ..|.+|++
T Consensus 297 ---------n~vAfspd~~-----lmAaaskD-----~rISLWkL 322 (323)
T KOG0322|consen 297 ---------NAVAFSPDCE-----LMAAASKD-----ARISLWKL 322 (323)
T ss_pred ---------eEEEeCCCCc-----hhhhccCC-----ceEEeeec
Confidence 4999999977 89999999 99999986
No 188
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.62 E-value=7.5e-15 Score=117.20 Aligned_cols=118 Identities=17% Similarity=0.249 Sum_probs=93.6
Q ss_pred EEEECCC---CCEEEEEeCCCcEEEEeCCCCCCC-cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 14 SSSWNYC---GQRLATGSTDGTLSIFDSPDPSSS-SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 14 ~~~~s~~---~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
+..|++. ...|+.+.+||.|.++|.....-. .-..+.....|...|.++.|.|. ...|++++.|.++++||+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC--ceeEEEccCCceeeeeeecc
Confidence 3566652 358999999999999998643100 01123445579999999999997 78899999999999999987
Q ss_pred ccCCCcccEEEEE--eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 90 EDAQPLQWKLCKS--FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
. .+... +.+|...|.+++|.|. +...|++|+.||.|.|||++..
T Consensus 132 s-------~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 132 S-------RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred c-------eeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEecc
Confidence 6 55555 7899999999999985 5567999999999999999853
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.61 E-value=4.2e-15 Score=116.72 Aligned_cols=163 Identities=20% Similarity=0.303 Sum_probs=122.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295 22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK 101 (240)
Q Consensus 22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 101 (240)
..|+.++.||.+.|.+-.. +.-..+..|.+.+.+-.|+|+ |.-|++++.||.|++|.-.. ....
T Consensus 76 d~~~i~s~DGkf~il~k~~------rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG--------MLRS 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA------RVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG--------MLRS 139 (737)
T ss_pred ceEEEEcCCceEEEecccc------hhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc--------hHHH
Confidence 4788899999999887653 344567789999999999999 99999999999999999653 3444
Q ss_pred EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295 102 SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE 181 (240)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~ 181 (240)
++......|.|++|.| +...++.+.. +.+.|=.+.. -..+-..+.|.+-+- ++.|+|...
T Consensus 140 tl~Q~~~~v~c~~W~p--~S~~vl~c~g-~h~~IKpL~~------n~k~i~WkAHDGiiL----------~~~W~~~s~- 199 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAP--NSNSIVFCQG-GHISIKPLAA------NSKIIRWRAHDGLVL----------SLSWSTQSN- 199 (737)
T ss_pred HHhhcCceeEEEEECC--CCCceEEecC-CeEEEeeccc------ccceeEEeccCcEEE----------EeecCcccc-
Confidence 4555678999999999 6665555443 3455544443 122334567776666 899999988
Q ss_pred CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
++++|+.| -..+|||..... .+ ....|..+|++|+|+|+
T Consensus 200 ----lI~sgGED-----~kfKvWD~~G~~-Lf-------~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 200 ----IIASGGED-----FRFKIWDAQGAN-LF-------TSAAEEYAITSVAFNPE 238 (737)
T ss_pred ----ceeecCCc-----eeEEeecccCcc-cc-------cCChhccceeeeeeccc
Confidence 89999999 999999976532 11 12246679999999998
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=107.60 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=115.7
Q ss_pred cccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEE
Q 026295 8 LDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLW 85 (240)
Q Consensus 8 h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iw 85 (240)
..+-|.|++|+|.. +.+|.|+.-.++-||.-. ...++..+.+|.+.|+.++|.++ |+.|.+|.. |-.|.+|
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-----~~~pl~llggh~gGvThL~~~ed--Gn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-----GRRPLQLLGGHGGGVTHLQWCED--GNKLFSGARKDDKILCW 278 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecC-----CCCceeeecccCCCeeeEEeccC--cCeecccccCCCeEEEE
Confidence 35678899999955 699999999999999877 44677888899999999999999 999988875 6689999
Q ss_pred EeeeccCCCcccEEEEEeeeccc-cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTST-QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
|++.-. .++..+..|.. .-..|-|.-.+.+++|++|+.||.|++||+++..+ ....+..+..
T Consensus 279 DiR~~~------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-----~~sv~~~~sd------ 341 (406)
T KOG2919|consen 279 DIRYSR------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-----EVSVTGNYSD------ 341 (406)
T ss_pred eehhcc------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----cccccccccc------
Confidence 998642 45555555544 33455665444999999999999999999987422 2222223322
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNS 193 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~d 193 (240)
.+|.|+++|.-. ++|+++..
T Consensus 342 ----~vNgvslnP~mp-----ilatssGq 361 (406)
T KOG2919|consen 342 ----TVNGVSLNPIMP-----ILATSSGQ 361 (406)
T ss_pred ----cccceecCcccc-----eeeeccCc
Confidence 345899999976 88888763
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.9e-13 Score=101.85 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=100.4
Q ss_pred cccceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-EEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-LLL 84 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~i 84 (240)
+...+.+++++..+.+||--+ ..|.|.|||.. +.+.+..+..|++++.+++|+++ |.++|+++..|+ ||+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-----nl~~v~~I~aH~~~lAalafs~~--G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-----NLQPVNTINAHKGPLAALAFSPD--GTLLATASEKGTVIRV 200 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcc-----cceeeeEEEecCCceeEEEECCC--CCEEEEeccCceEEEE
Confidence 455677777777788988754 34889999998 77899999999999999999999 999999999996 789
Q ss_pred EEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 85 WEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
+.+.++ +.+.+|+.. ...|.+++|+| ++.+|++.+..++|++|.+.+
T Consensus 201 f~v~~G-------~kl~eFRRG~~~~~IySL~Fs~--ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEG-------QKLYEFRRGTYPVSIYSLSFSP--DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEcCCc-------cEeeeeeCCceeeEEEEEEECC--CCCeEEEecCCCeEEEEEecc
Confidence 999777 888888753 35678999999 999999999999999999875
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.4e-13 Score=96.39 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=120.9
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC-----cEEEEeEeee---cCccEEEEEEcCCCCCCEEEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS-----SFTCNLKTKV---HAGAILKVVWVPPEFGDAVACI 76 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~ 76 (240)
.+.|+++|..++|. ..+|++|+. |.|+=|.-...... .++...-.+. .--.|+++...|. .+-++.+
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~--enSi~~A 132 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS--ENSILFA 132 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC--CCcEEEe
Confidence 47899999999998 456777764 99998876532110 1111111110 1135788888887 5545555
Q ss_pred ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
+.|+.+..||++.+ +..+++++|+..+.++.--. .+++ +++|+.||++++||+++ .+.++.+...
T Consensus 133 gGD~~~y~~dlE~G-------~i~r~~rGHtDYvH~vv~R~-~~~q-ilsG~EDGtvRvWd~kt------~k~v~~ie~y 197 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG-------RIQREYRGHTDYVHSVVGRN-ANGQ-ILSGAEDGTVRVWDTKT------QKHVSMIEPY 197 (325)
T ss_pred cCCeEEEEEEecCC-------EEEEEEcCCcceeeeeeecc-cCcc-eeecCCCccEEEEeccc------cceeEEeccc
Confidence 67999999999988 99999999999999998732 2555 99999999999999998 4555544422
Q ss_pred c--ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 157 I--DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 157 ~--~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
. ...+|.... -+.+++ -+.. .|++|+. ..+.+|+++..+.. .+..++ + .|..+.|
T Consensus 198 k~~~~lRp~~g~--wigala--~~ed-----WlvCGgG------p~lslwhLrsse~t--~vfpip---a---~v~~v~F 254 (325)
T KOG0649|consen 198 KNPNLLRPDWGK--WIGALA--VNED-----WLVCGGG------PKLSLWHLRSSEST--CVFPIP---A---RVHLVDF 254 (325)
T ss_pred cChhhcCcccCc--eeEEEe--ccCc-----eEEecCC------CceeEEeccCCCce--EEEecc---c---ceeEeee
Confidence 1 111211110 011232 2222 6777775 68999999876533 222222 2 5666666
Q ss_pred ecC
Q 026295 235 ALN 237 (240)
Q Consensus 235 sp~ 237 (240)
-.|
T Consensus 255 ~~d 257 (325)
T KOG0649|consen 255 VDD 257 (325)
T ss_pred ecc
Confidence 554
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.57 E-value=1.4e-12 Score=104.62 Aligned_cols=180 Identities=21% Similarity=0.346 Sum_probs=135.9
Q ss_pred ceEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEEE
Q 026295 11 GTTSSSW-NYCGQ-RLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLWE 86 (240)
Q Consensus 11 ~v~~~~~-s~~~~-~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd 86 (240)
.+..+.+ ++++. +++..+. |+.+++|+... .......+..|...|..++|+|+ +..+++++. |+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWD 184 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecC----CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEE
Confidence 5667777 78887 5555455 89999999983 14677788899999999999999 888888875 99999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEe-eeecccceeeccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFR 164 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 164 (240)
.... ..+..+..|...|.+++|+| ++. .+++++.|+.|++||... ..... .+..+.....
T Consensus 185 ~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~--- 246 (466)
T COG2319 185 LRTG-------KPLSTLAGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVV--- 246 (466)
T ss_pred cCCC-------ceEEeeccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCC------CcEEeeecCCCCccee---
Confidence 9764 67778888999999999998 776 555569999999997763 34333 3444422100
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
. .|+|++. ++++++.+ +.+++|+...... ....+ .+|...|.++.|+|++
T Consensus 247 -------~-~~~~~~~-----~~~~~~~d-----~~~~~~~~~~~~~---~~~~~---~~~~~~v~~~~~~~~~ 296 (466)
T COG2319 247 -------S-SFSPDGS-----LLASGSSD-----GTIRLWDLRSSSS---LLRTL---SGHSSSVLSVAFSPDG 296 (466)
T ss_pred -------E-eECCCCC-----EEEEecCC-----CcEEEeeecCCCc---EEEEE---ecCCccEEEEEECCCC
Confidence 1 6888885 78888888 9999999987654 12222 3577899999999954
No 194
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.8e-13 Score=97.21 Aligned_cols=111 Identities=18% Similarity=0.309 Sum_probs=87.6
Q ss_pred ccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---CeEE
Q 026295 9 DKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GSLL 83 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~ 83 (240)
.+.|.+++|+|+|+.||+. ..+..|.+||+. .+.+..+. ...++.+.|+|. |++++.++.+ |.|.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~~i~~~~--~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GKKIFSFG--TQPRNTISWSPD--GRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc------ccEeEeec--CCCceEEEECCC--CCEEEEEEccCCCcEEE
Confidence 3469999999999987655 456799999996 24455553 567889999999 9999988753 6799
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC------CCcEEEEEecC
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS------DGHVKVYELLD 140 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~iw~~~~ 140 (240)
+||.+.. +.+..+.. ..+..++|+| +|++|++++. |+.++||+...
T Consensus 129 ~wd~~~~-------~~i~~~~~--~~~t~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKK-------KKISTFEH--SDATDVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCC-------EEeecccc--CcEEEEEEcC--CCCEEEEEEeccceeccccEEEEEecC
Confidence 9999865 66666653 3578999999 9999998874 68899999863
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=4.5e-15 Score=114.51 Aligned_cols=178 Identities=12% Similarity=0.121 Sum_probs=135.7
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
..|..+.|-|..-+|++++..|.++.-|+. +++++..+..-.+.+..++-+|- .-.+-.|...|+|.+|....
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-----~GklVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVS-----TGKLVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeec-----hhhhhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCC
Confidence 357788899999999999999999999998 78888888877888999999888 78888999999999999987
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (240)
. .++..+..|.++|.+|++.+ +|.|+++.+.|..|+|||++. ....+.+.. .....
T Consensus 283 k-------ePLvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~------~~ql~t~~t-p~~a~-------- 338 (545)
T KOG1272|consen 283 K-------EPLVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRN------FYQLHTYRT-PHPAS-------- 338 (545)
T ss_pred c-------chHHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeecc------ccccceeec-CCCcc--------
Confidence 7 78888889999999999988 999999999999999999997 332323222 11122
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-C-CCcceeEeeecCCCCCCceEEEEEec
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-H-NRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~-~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
.++++..+ +||.+.. ..|.||.-.-. . ....+. -.|. ...+|.+|.|.|
T Consensus 339 --~ls~Sqkg------lLA~~~G------~~v~iw~d~~~~s~~~~~pY---m~H~-~~~~V~~l~FcP 389 (545)
T KOG1272|consen 339 --NLSLSQKG------LLALSYG------DHVQIWKDALKGSGHGETPY---MNHR-CGGPVEDLRFCP 389 (545)
T ss_pred --cccccccc------ceeeecC------CeeeeehhhhcCCCCCCcch---hhhc-cCcccccceecc
Confidence 67888777 5666655 68999953221 1 111111 0111 333788888887
No 196
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-14 Score=114.64 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=129.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
++.-.+.|.++.|+|...+|++++. ..|+|||+. ...++..+..-...|..++.+|. |..|+.++.|+.++.
T Consensus 562 F~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~-----kqelvKkL~tg~kwiS~msihp~--GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 562 FRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS-----KQELVKKLLTGSKWISSMSIHPN--GDNLILGSYDKKMCW 633 (733)
T ss_pred hhhcCCceeEEEecCCCceEEEEec-cceEEEehh-----HHHHHHHHhcCCeeeeeeeecCC--CCeEEEecCCCeeEE
Confidence 3444578999999999999999887 699999998 44455555544566889999998 999999999999999
Q ss_pred EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc---eeEEeeeecccceee
Q 026295 85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN---WQLQAEFQNAIDSVT 161 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~ 161 (240)
+|+.-.. ++.++++.|...+++|+|++ .-.++++|+.||++.|+.-.-...+.+ ..++..+.+|... .
T Consensus 634 fDldlss------kPyk~lr~H~~avr~Va~H~--ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-~ 704 (733)
T KOG0650|consen 634 FDLDLSS------KPYKTLRLHEKAVRSVAFHK--RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-N 704 (733)
T ss_pred EEcccCc------chhHHhhhhhhhhhhhhhcc--ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-c
Confidence 9997543 67888889999999999988 888899999999999987554332222 2334444555332 0
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW 204 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw 204 (240)
...+.++.|+|... .|.+++.| |+|++|
T Consensus 705 -----~~gVLd~~wHP~qp-----WLfsAGAd-----~tirlf 732 (733)
T KOG0650|consen 705 -----DLGVLDTIWHPRQP-----WLFSAGAD-----GTIRLF 732 (733)
T ss_pred -----ccceEeecccCCCc-----eEEecCCC-----ceEEee
Confidence 01233678999987 89999998 999998
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.9e-14 Score=103.34 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=119.2
Q ss_pred chhcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEec-
Q 026295 3 KAVATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICS- 78 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~- 78 (240)
+.+..++..++.++|.. ....+.+|+.||+|++||++... ......+..|. .+..++.-+-. ++++++|..
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~---e~a~~~~~~~~~~~f~~ld~nck--~~ii~~GtE~ 138 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA---ESARISWTQQSGTPFICLDLNCK--KNIIACGTEL 138 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch---hhhheeccCCCCCcceEeeccCc--CCeEEecccc
Confidence 34667888899999977 45789999999999999998431 12223333444 34445555434 677777643
Q ss_pred ---CCeEEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295 79 ---DGSLLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 79 ---d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
|-.|.+||.+... ++++.+ ..|...|+++.|+|+ +.++|++|+.||-|.+||++.+.+. -.+...+
T Consensus 139 ~~s~A~v~lwDvR~~q------q~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~vi- 208 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQ------QLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVI- 208 (376)
T ss_pred ccCceEEEEEEecccc------chhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCcch--hhHHHhh-
Confidence 5689999998753 324444 468999999999996 5678999999999999999875221 1122222
Q ss_pred cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
.+...| ..+.|.-.+-. .|.+-+.. ....+|++..+..
T Consensus 209 N~~sSI----------~~igw~~~~yk----rI~clTH~-----Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 209 NHGSSI----------HLIGWLSKKYK----RIMCLTHM-----ETFAIYELEDGSE 246 (376)
T ss_pred ccccee----------eeeeeecCCcc----eEEEEEcc-----CceeEEEccCCCh
Confidence 222223 37889887731 46666666 8999999977653
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.4e-14 Score=100.07 Aligned_cols=172 Identities=16% Similarity=0.223 Sum_probs=121.6
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC----CCcE-EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS----SSSF-TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
....|..-+++|.+++|++|..+|.|-++.+..-. .+.+ ..+...++|+++|+.++|. + .+|++++ ||.|
T Consensus 9 ~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d---~~Lls~g-dG~V 83 (325)
T KOG0649|consen 9 AYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D---DFLLSGG-DGLV 83 (325)
T ss_pred HHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h---hheeecc-CceE
Confidence 33567778999999999999999999999885321 1112 2344557999999999994 3 4566655 6999
Q ss_pred EEEEeeeccC---CCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 83 LLWEEIVEDA---QPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 83 ~iwd~~~~~~---~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
+-|.-+.... -...|+....+. ..-..|+++-..| ..+-++.++.|+.++-||+++ +....++.+|
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~------G~i~r~~rGH 155 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLED------GRIQREYRGH 155 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecC------CEEEEEEcCC
Confidence 9886543211 012222221111 1235678888888 444456666899999999998 7888999999
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
...++ ++.-..... -+++|+.| |++||||..+.+..
T Consensus 156 tDYvH----------~vv~R~~~~-----qilsG~ED-----GtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 156 TDYVH----------SVVGRNANG-----QILSGAED-----GTVRVWDTKTQKHV 191 (325)
T ss_pred cceee----------eeeecccCc-----ceeecCCC-----ccEEEEecccccee
Confidence 99988 777633333 58999999 99999999887643
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.55 E-value=3.7e-12 Score=100.23 Aligned_cols=204 Identities=10% Similarity=-0.008 Sum_probs=123.5
Q ss_pred cceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEE 87 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~ 87 (240)
+....++|+|++++|++++. ++.|.+|++...+. ..+.+..+.+ ......++++|+ ++++++++ .++.|.+||+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~-~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-PVAPIQIIEG-LEGCHSANIDPD--NRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-CCCceeeccC-CCcccEeEeCCC--CCEEEEeeCCCCEEEEEEE
Confidence 35668999999998888764 78999999964221 1122333322 234677889998 88775544 5689999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
.........-....... .......+.|+| +++++++++. +++|.+|++.... ...+.++.+........ .
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~--~~~~~~~~~~~~p~~~~----~ 226 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPH--GEIECVQTLDMMPADFS----D 226 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCC--CCEEEEEEEecCCCcCC----C
Confidence 65210000000001111 124467899999 9998888776 8999999997421 12334444432211100 0
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
......+.++|++. +|+++...+ +.|.+|+++...........+... ...+.++|+||+.
T Consensus 227 ~~~~~~i~~~pdg~-----~lyv~~~~~----~~I~v~~i~~~~~~~~~~~~~~~~----~~p~~~~~~~dg~ 286 (330)
T PRK11028 227 TRWAADIHITPDGR-----HLYACDRTA----SLISVFSVSEDGSVLSFEGHQPTE----TQPRGFNIDHSGK 286 (330)
T ss_pred CccceeEEECCCCC-----EEEEecCCC----CeEEEEEEeCCCCeEEEeEEEecc----ccCCceEECCCCC
Confidence 11122688999987 777776533 899999997654443343333221 2456789999874
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.9e-13 Score=108.61 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=115.0
Q ss_pred hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~ 80 (240)
+..|...+...+|+|+|++|+..+.+ ..|++||+... ..+.+..+.+| ...++|+|+ |+.|+.+. .++
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~~~~g~---~~~~~wSPD--G~~La~~~~~~g 270 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVASFRGH---NGAPAFSPD--GSRLAFASSKDG 270 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEecCCCc---cCceeECCC--CCEEEEEEecCC
Confidence 45566789999999999999988754 36999999732 22344444443 346899999 98887754 688
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.+.||.+.... .....+..+...+....|+| +|..|+..+ .+|...||++..... . ...+ .+..
T Consensus 271 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~~~----~-~~~l-~~~~- 335 (429)
T PRK01742 271 VLNIYVMGANG------GTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSASGG----G-ASLV-GGRG- 335 (429)
T ss_pred cEEEEEEECCC------CCeEeeccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECCCC----C-eEEe-cCCC-
Confidence 77777554221 22333444556678899999 998766555 578889998764211 1 1111 1111
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. ...|+|++. .|+..+.+ + +.+||+.++... . +.. .+ ....++|+||+.
T Consensus 336 -~----------~~~~SpDG~-----~ia~~~~~-----~-i~~~Dl~~g~~~--~---lt~--~~--~~~~~~~sPdG~ 384 (429)
T PRK01742 336 -Y----------SAQISADGK-----TLVMINGD-----N-VVKQDLTSGSTE--V---LSS--TF--LDESPSISPNGI 384 (429)
T ss_pred -C----------CccCCCCCC-----EEEEEcCC-----C-EEEEECCCCCeE--E---ecC--CC--CCCCceECCCCC
Confidence 1 567999987 77777664 4 555888765422 1 111 11 235678999874
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=97.84 Aligned_cols=191 Identities=14% Similarity=0.241 Sum_probs=124.3
Q ss_pred cceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcE---------EEEeEeeecCccEEEEEEcCCCCCCEEEEEec-
Q 026295 10 KGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSF---------TCNLKTKVHAGAILKVVWVPPEFGDAVACICS- 78 (240)
Q Consensus 10 ~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~- 78 (240)
..|+|++|-|. ++-|+.|.. +-|.||.......... ..+..-.+| .+|++++|+++ |..+++++-
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~g 216 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFG 216 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccC
Confidence 47999999995 467888887 4688998763211000 112222355 68999999999 998888765
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
|..|+|||...+ ..+.-....-..+.-+.||| ++.+|++++-|+..++|+.... |....-.. ...
T Consensus 217 sssi~iWdpdtg-------~~~pL~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsg 281 (445)
T KOG2139|consen 217 SSSIMIWDPDTG-------QKIPLIPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSG 281 (445)
T ss_pred cceEEEEcCCCC-------CcccccccCCCceeeEEEcC--CCCEEEEecccceeeeehhccc-----ceecceec-cCC
Confidence 568999999887 33333333447788999999 9999999999999999976542 43332221 122
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC-----------cceeEeee------c
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR-----------WLPVAELA------L 221 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~-----------~~~~~~~~------~ 221 (240)
.+. .-+|+|.+. .|+.+.. +.-++|.+.-..+. ..+...|. +
T Consensus 282 rvq----------tacWspcGs-----fLLf~~s------gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag 340 (445)
T KOG2139|consen 282 RVQ----------TACWSPCGS-----FLLFACS------GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG 340 (445)
T ss_pred cee----------eeeecCCCC-----EEEEEEc------CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC
Confidence 344 788999997 5555554 56677766432111 11111111 1
Q ss_pred CCCCCCceEEEEEecCCCC
Q 026295 222 PEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 222 ~~~h~~~v~~v~~sp~~~~ 240 (240)
.+-..+++.+++|.|.|-|
T Consensus 341 ~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 341 QRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred cccccCccceeeECCCCCE
Confidence 1113457899999998854
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=1.6e-11 Score=96.57 Aligned_cols=201 Identities=10% Similarity=0.053 Sum_probs=121.0
Q ss_pred ccceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEEE
Q 026295 9 DKGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLWE 86 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd 86 (240)
.+....++++|++++|++++ .++.|.+|++...+ ....+.... ..+....+.++|+ ++++++++. ++.|.+|+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSP 108 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEE
Confidence 35677899999999887664 57889999996322 333333332 2345678999999 988877664 78999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
+..... ....+..+.. ......++++| +++++++++ .++.|.+||+.+...+.. .......... +
T Consensus 109 ~~~~g~---~~~~~~~~~~-~~~~~~~~~~p--~g~~l~v~~~~~~~v~v~d~~~~g~l~~-~~~~~~~~~~------g- 174 (330)
T PRK11028 109 LDKDGI---PVAPIQIIEG-LEGCHSANIDP--DNRTLWVPCLKEDRIRLFTLSDDGHLVA-QEPAEVTTVE------G- 174 (330)
T ss_pred ECCCCC---CCCceeeccC-CCcccEeEeCC--CCCEEEEeeCCCCEEEEEEECCCCcccc-cCCCceecCC------C-
Confidence 863210 0122222222 23467788998 888775554 569999999975211100 0000011000 0
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC---CCCCceEEEEEecCCC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE---DRSDEVYAVAWALNIG 239 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~ 239 (240)
.....+.|+|++. +++++...+ +.|.+|+++...........+.... .+......+.|+||+.
T Consensus 175 --~~p~~~~~~pdg~-----~lyv~~~~~----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 175 --AGPRHMVFHPNQQ-----YAYCVNELN----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred --CCCceEEECCCCC-----EEEEEecCC----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1123789999987 777777633 9999999985332333333332211 1222345688999874
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9e-14 Score=108.03 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=144.0
Q ss_pred cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.++|..|.+.|..+.|+..|..|++|+.|..|.+||-. .......+ .+|...|...+|.|.....-+++++.||
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-----~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-----SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhh-----ccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 46799999999999999999999999999999999987 33444444 4798899999998875456789999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.|++=.+... ........+..|.+.|..++.-|. ....|.+++.|+.|.-+|++...+.....+. ..+..
T Consensus 210 qvr~s~i~~t----~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---~~~~~-- 279 (559)
T KOG1334|consen 210 QVRVSEILET----GYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---EADEK-- 279 (559)
T ss_pred ceeeeeeccc----cceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeee---ccCCc--
Confidence 9998776543 111223445568889999999884 3345899999999999999875443322211 11111
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC--------cceeEeeecCCCCCCceEEE
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR--------WLPVAELALPEDRSDEVYAV 232 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~--------~~~~~~~~~~~~h~~~v~~v 232 (240)
....-++++-+|.... .+++|++| ..+++||.+.-... +.+...+. ...-.|+++
T Consensus 280 -----~~v~L~~Ia~~P~nt~----~faVgG~d-----qf~RvYD~R~~~~e~~n~~~~~f~p~hl~~---d~~v~ITgl 342 (559)
T KOG1334|consen 280 -----ERVGLYTIAVDPRNTN----EFAVGGSD-----QFARVYDQRRIDKEENNGVLDKFCPHHLVE---DDPVNITGL 342 (559)
T ss_pred -----cceeeeeEecCCCCcc----ccccCChh-----hhhhhhcccchhhccccchhhhcCCccccc---cCcccceeE
Confidence 0011127778887753 89999999 99999998754322 11111111 122368999
Q ss_pred EEecCCC
Q 026295 233 AWALNIG 239 (240)
Q Consensus 233 ~~sp~~~ 239 (240)
+|+-+++
T Consensus 343 ~Ysh~~s 349 (559)
T KOG1334|consen 343 VYSHDGS 349 (559)
T ss_pred EecCCcc
Confidence 9997664
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-12 Score=109.87 Aligned_cols=203 Identities=17% Similarity=0.121 Sum_probs=134.6
Q ss_pred cchhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295 2 DKAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 2 ~~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
...|.+|...|..++.++.. .+|++|+.||+|++|+..+... ++.+...++..-..++..+...+. ++.+|.++.
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQFAVSTK 1118 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCeEEEEcC
Confidence 34578899999999988755 9999999999999999975321 234444555545678999999888 999999999
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
||.|++.++.............+.... ....|..-+|........++.+...+.|..||++..... |.... ...
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--w~lk~--~~~ 1194 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--WRLKN--QLR 1194 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--Hhhhc--Ccc
Confidence 999999998752111000111111111 222233334432212236888899999999999974333 22222 223
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC--CCcceeEeeecCCCCCCceEEEEE
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH--NRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
.+.++ +++-+|.+. .+++|.+. |.+-+||++-.. ..|.. ++..+++.|..
T Consensus 1195 hG~vT----------Si~idp~~~-----WlviGts~-----G~l~lWDLRF~~~i~sw~~--------P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1195 HGLVT----------SIVIDPWCN-----WLVIGTSR-----GQLVLWDLRFRVPILSWEH--------PARAPIRHVWL 1246 (1431)
T ss_pred cccee----------EEEecCCce-----EEEEecCC-----ceEEEEEeecCceeecccC--------cccCCcceEEe
Confidence 34444 888999988 89999998 999999997542 22222 34457777777
Q ss_pred ecCC
Q 026295 235 ALNI 238 (240)
Q Consensus 235 sp~~ 238 (240)
+|--
T Consensus 1247 ~~~~ 1250 (1431)
T KOG1240|consen 1247 CPTY 1250 (1431)
T ss_pred eccC
Confidence 6643
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1e-12 Score=106.73 Aligned_cols=178 Identities=20% Similarity=0.214 Sum_probs=113.9
Q ss_pred cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEE 87 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~ 87 (240)
+....++|+|+|++|+.++ .+|.+.||.++.. ... ...+..+...+....|+|+ |+.++..+ .++...||++
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~---~~~-~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN---GGT-PSQLTSGAGNNTEPSWSPD--GQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEEECC---CCC-eEeeccCCCCcCCEEECCC--CCEEEEEECCCCCceEEEE
Confidence 3445789999999888765 6887777654321 112 2334456667889999999 98766544 5788899988
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
..... . ...+ .+.. ....|+| +|.+|+..+.++ +.+||+.+. +.. .+.... ...
T Consensus 322 ~~~~~-----~-~~~l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g------~~~-~lt~~~-~~~------ 375 (429)
T PRK01742 322 SASGG-----G-ASLV-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSG------STE-VLSSTF-LDE------ 375 (429)
T ss_pred ECCCC-----C-eEEe-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCC------CeE-EecCCC-CCC------
Confidence 64321 1 1112 2222 4578999 999888887765 556898762 221 111110 111
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.+.|+|++. +|+.++.+ +.+.+|.+...... ....+. .|.+.+...+|||-.
T Consensus 376 ----~~~~sPdG~-----~i~~~s~~-----g~~~~l~~~~~~G~--~~~~l~---~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 376 ----SPSISPNGI-----MIIYSSTQ-----GLGKVLQLVSADGR--FKARLP---GSDGQVKFPAWSPYL 427 (429)
T ss_pred ----CceECCCCC-----EEEEEEcC-----CCceEEEEEECCCC--ceEEcc---CCCCCCCCcccCCCC
Confidence 678999997 88888887 88888887542221 233333 355689999999954
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.9e-12 Score=109.31 Aligned_cols=187 Identities=11% Similarity=0.141 Sum_probs=122.2
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295 15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ 93 (240)
Q Consensus 15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 93 (240)
+.|.....+|.+++.-..|+|||... .+....+. +.+..|+++.-+.. .|++++.|..||.|++||.+.....
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----E~~~~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHK-----EQVVADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEeccc-----ceeEeecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCcc
Confidence 56766555666666678999999983 34444443 34456777765544 2799999999999999999875332
Q ss_pred CcccEEEEEeeecccc--EEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295 94 PLQWKLCKSFESTSTQ--VLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 170 (240)
Q Consensus 94 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (240)
..+...+.|... |..+.+.+ .|. .|++|+.||.|++||++.+.... ...+..+.. .+...
T Consensus 1245 ----s~v~~~R~h~~~~~Iv~~slq~--~G~~elvSgs~~G~I~~~DlR~~~~e~----~~~iv~~~~-------yGs~l 1307 (1387)
T KOG1517|consen 1245 ----SLVCVYREHNDVEPIVHLSLQR--QGLGELVSGSQDGDIQLLDLRMSSKET----FLTIVAHWE-------YGSAL 1307 (1387)
T ss_pred ----ccceeecccCCcccceeEEeec--CCCcceeeeccCCeEEEEecccCcccc----cceeeeccc-------cCccc
Confidence 456667777766 88999977 444 49999999999999999742111 111112110 00011
Q ss_pred eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC-CCCCCceEEEEEecC
Q 026295 171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP-EDRSDEVYAVAWALN 237 (240)
Q Consensus 171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~ 237 (240)
+++.-++... ++|+|+. +.|+||++...+..-.... +.+ ......+.+++|+|-
T Consensus 1308 Tal~VH~hap-----iiAsGs~------q~ikIy~~~G~~l~~~k~n--~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1308 TALTVHEHAP-----IIASGSA------QLIKIYSLSGEQLNIIKYN--PGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred eeeeeccCCC-----eeeecCc------ceEEEEecChhhhcccccC--cccccCcCCCcceeeecch
Confidence 2777788776 8888887 7999999876542211111 111 113336799999984
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=4.9e-12 Score=102.71 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=114.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
+..+.+.+.+.+|+|+|+.|+..+.+ ..|.+||+... ....+ ....+.+....|+|+ |+.++ +.+.++
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l---~~~~g~~~~~~~SPD--G~~la~~~~~~g 262 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVV---ANFKGSNSAPAWSPD--GRTLAVALSRDG 262 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEe---ecCCCCccceEECCC--CCEEEEEEccCC
Confidence 44566788899999999999887643 35999999733 22222 223345668999999 98776 567788
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccce
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
...||.+.... .....+..+........|+| +|+.|+..+. +|...+|.+.... .. ...+......
T Consensus 263 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~----g~-~~~lt~~g~~ 329 (427)
T PRK02889 263 NSQIYTVNADG------SGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG----GA-AQRVTFTGSY 329 (427)
T ss_pred CceEEEEECCC------CCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC----Cc-eEEEecCCCC
Confidence 87888765322 12333433444556788999 9998776654 4677788764311 11 1111111111
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.. ...|+|++. +|+..+.+++. ..|.+||+.++... .+.. .......+|+||+.
T Consensus 330 ~~----------~~~~SpDG~-----~Ia~~s~~~g~--~~I~v~d~~~g~~~-----~lt~----~~~~~~p~~spdg~ 383 (427)
T PRK02889 330 NT----------SPRISPDGK-----LLAYISRVGGA--FKLYVQDLATGQVT-----ALTD----TTRDESPSFAPNGR 383 (427)
T ss_pred cC----------ceEECCCCC-----EEEEEEccCCc--EEEEEEECCCCCeE-----EccC----CCCccCceECCCCC
Confidence 11 578999987 67766654100 26889998765422 1111 11346789999974
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.6e-12 Score=97.87 Aligned_cols=122 Identities=10% Similarity=0.070 Sum_probs=93.7
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
|...|.|++|+...++|.+|..+++|.+.|+. +-+.+..+. ...+.|+.+..+|. .+.|++.+.++.|.+|
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-----t~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-----TKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFI 176 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecc-----cceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEE
Confidence 56789999999999999999999999999998 334444433 23358999999998 8999999999999999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
|.+...+. -.+...........++.|+|. ...+|++.+..+-+.+||.+.+
T Consensus 177 D~Rd~~~~----~~~~~~AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 177 DNRDRQNP----ISLVLPANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eccCCCCC----CceeeecCCCccceeeeecCC-CceeEEeccccCCCCceeeccc
Confidence 99865311 111222234466788899985 4456888888888999999864
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=106.92 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=105.7
Q ss_pred EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEE
Q 026295 49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAA 127 (240)
Q Consensus 49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~ 127 (240)
-..+.+|++.|+++.|+.+ |.+|++|+.|-.+.|||.-.. +++..+. +|...|.++.|-|..+..++++|
T Consensus 43 E~eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~-------KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEY-------KLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred hhhhccccceecceeecCC--CCEEeecCCcceEEeecchhc-------ceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 3567799999999999999 999999999999999998755 6777765 79999999999998888999999
Q ss_pred eCCCcEEEEEecCccc----ccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295 128 YSDGHVKVYELLDPLI----LKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV 203 (240)
Q Consensus 128 ~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i 203 (240)
..|..|+++|+..... ....+....+..|...+. .++-.|.++. .+.+++.| |+|+-
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK----------ria~~p~~Ph----tfwsasED-----GtirQ 174 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK----------RIATAPNGPH----TFWSASED-----GTIRQ 174 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhh----------heecCCCCCc----eEEEecCC-----cceee
Confidence 9999999999975211 111222233344554444 6777787743 89999999 99999
Q ss_pred EEeecC
Q 026295 204 WEFDEA 209 (240)
Q Consensus 204 w~~~~~ 209 (240)
||++..
T Consensus 175 yDiREp 180 (758)
T KOG1310|consen 175 YDIREP 180 (758)
T ss_pred ecccCC
Confidence 999874
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.9e-12 Score=104.63 Aligned_cols=188 Identities=12% Similarity=0.192 Sum_probs=133.5
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEEEEEeeeccC
Q 026295 14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~ 92 (240)
...|++|+++++.+.. ..|.||... ++.++..+.+|..++..+.+.|.... .++.+++.||.|++||...+.-
T Consensus 21 ~avfSnD~k~l~~~~~-~~V~VyS~~-----Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTG-NFVKVYSTA-----TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccccCCcEEEEeeC-CEEEEEecc-----hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 3478999998888876 589999998 88999999999999999999887322 4677999999999999432100
Q ss_pred ---------------------------------------------------------------------------CCccc
Q 026295 93 ---------------------------------------------------------------------------QPLQW 97 (240)
Q Consensus 93 ---------------------------------------------------------------------------~~~~~ 97 (240)
+..++
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 00000
Q ss_pred EEEE------Ee---------------eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 98 KLCK------SF---------------ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 98 ~~~~------~~---------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
..+. .+ ..|.-.+++.+++| ++++++++..||+|.+|.--..... -.-...+.=|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH 250 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWH 250 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEeccccccc--cccceEEEec
Confidence 0000 00 01334467899999 9999999999999999974431110 1112223333
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
... |++++|++++. +|++|+.. +.+-+|.+.++++++.+ .-+++|..+.+||
T Consensus 251 ~~~----------V~~L~fS~~G~-----~LlSGG~E-----~VLv~Wq~~T~~kqfLP--------RLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 251 HDE----------VNSLSFSSDGA-----YLLSGGRE-----GVLVLWQLETGKKQFLP--------RLGSPILHIVVSP 302 (792)
T ss_pred ccc----------cceeEEecCCc-----eEeecccc-----eEEEEEeecCCCccccc--------ccCCeeEEEEEcC
Confidence 333 34999999998 99999999 99999999998744322 2344999999999
Q ss_pred CCC
Q 026295 237 NIG 239 (240)
Q Consensus 237 ~~~ 239 (240)
|+.
T Consensus 303 ds~ 305 (792)
T KOG1963|consen 303 DSD 305 (792)
T ss_pred CCC
Confidence 974
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.9e-11 Score=98.62 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=113.1
Q ss_pred hcccccceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
+..|...+.+.+|+|+|+.|+..+. +..|.+||+... +. ..+..+.+.+....|+|+ |+.|+ +.+.++
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----~~-~~l~~~~g~~~~~~~SPD--G~~la~~~~~~g 268 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----QR-ELVGNFPGMTFAPRFSPD--GRKVVMSLSQGG 268 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----cE-EEeecCCCcccCcEECCC--CCEEEEEEecCC
Confidence 5567778999999999999888764 467999999732 22 223345567778999999 88665 555566
Q ss_pred e--EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecCcccccceeEEeeeec
Q 026295 81 S--LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 81 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
. |.+||+..+ . ...+..+........|+| +|..++..+. +| .|.++|+.. .+ ...+..
T Consensus 269 ~~~Iy~~d~~~~-------~-~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g------~~-~~~lt~ 331 (435)
T PRK05137 269 NTDIYTMDLRSG-------T-TTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADG------SN-PRRISF 331 (435)
T ss_pred CceEEEEECCCC-------c-eEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCC------CC-eEEeec
Confidence 5 555666543 2 333444445566789999 9998877663 34 466666553 11 122222
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
...... ...|+|++. .|+....+.+. ..|.+|++..+.. ..+. ....+..++|+
T Consensus 332 ~~~~~~----------~~~~SpdG~-----~ia~~~~~~~~--~~i~~~d~~~~~~-----~~lt----~~~~~~~p~~s 385 (435)
T PRK05137 332 GGGRYS----------TPVWSPRGD-----LIAFTKQGGGQ--FSIGVMKPDGSGE-----RILT----SGFLVEGPTWA 385 (435)
T ss_pred CCCccc----------CeEECCCCC-----EEEEEEcCCCc--eEEEEEECCCCce-----Eecc----CCCCCCCCeEC
Confidence 111122 678999997 67665543200 2566677644321 1111 11146778999
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
||+.
T Consensus 386 pDG~ 389 (435)
T PRK05137 386 PNGR 389 (435)
T ss_pred CCCC
Confidence 9974
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.3e-12 Score=104.00 Aligned_cols=180 Identities=13% Similarity=0.185 Sum_probs=128.0
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.|.-.++|.++||.++++|+|..||.|.+|.-..... .-.....+.=|..+|.++.|+++ |.+|++|+..+.+-+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccccc-ccccceEEEecccccceeEEecC--CceEeecccceEEEEEe
Confidence 3555689999999999999999999999997654110 11234556678899999999999 99999999999999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-ccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM-FRK 165 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 165 (240)
+.++ + .+-++.-.+.|..+.++| ++.+.+....|++|.+....+. +....+.+....... ...
T Consensus 280 ~~T~-------~-kqfLPRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl------~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 280 LETG-------K-KQFLPRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDL------EIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred ecCC-------C-cccccccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccch------hhhhhccCccCCCcccccc
Confidence 9875 3 333445568899999999 9999999999999999877542 222222211111000 000
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP 215 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~ 215 (240)
..+-...++.+|... .++..+.. +.|.+||+.+....+.+
T Consensus 344 ~~~l~t~~~idpr~~-----~~vln~~~-----g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTN-----SLVLNGHP-----GHVQFYDLYTDSTIYKL 383 (792)
T ss_pred ccccceeEEEcCCCC-----ceeecCCC-----ceEEEEeccccceeeeE
Confidence 112223778888544 56777777 99999999887665443
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.44 E-value=3.4e-14 Score=109.76 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=133.0
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
+.|..+.|-.+.+++|++-. ..+.|||-.+ ..++.++.| ..|..+.|-|. --+|++++..|.++.-|+..
T Consensus 171 Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G------tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQK-KYVYVYDNNG------TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred hhhhhhhhhcchHHHHhhhh-ceEEEecCCC------cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeech
Confidence 46888889888889998865 7899999763 456777765 57899999997 77888899999999999988
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (240)
+ +.+..+....+.+..++-+| -+..+-+|..+|+|.+|.... .++...+..|..+++
T Consensus 241 G-------klVa~~~t~~G~~~vm~qNP--~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~-------- 297 (545)
T KOG1272|consen 241 G-------KLVASIRTGAGRTDVMKQNP--YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVS-------- 297 (545)
T ss_pred h-------hhhHHHHccCCccchhhcCC--ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcc--------
Confidence 8 88888887778888888888 788899999999999999887 466667778888888
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
++++.+.+. |++|.+.| +.++|||++...
T Consensus 298 --siAv~~~G~-----YMaTtG~D-----r~~kIWDlR~~~ 326 (545)
T KOG1272|consen 298 --SIAVDRGGR-----YMATTGLD-----RKVKIWDLRNFY 326 (545)
T ss_pred --eEEECCCCc-----EEeecccc-----cceeEeeecccc
Confidence 999999998 99999999 999999999865
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=4.1e-12 Score=100.90 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=122.1
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295 14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ 93 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 93 (240)
.++++.-..-|..++....|+=+++. .++-+..+....+.++++..++. ..+|++|+.+|.|..||.+..
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLE-----qGrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~k--- 207 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLE-----QGRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDK--- 207 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcc-----ccccccccccccccceeeeecCc--cceEEecccCceEEEecchhh---
Confidence 34444433333344444567777787 55677778777789999999998 888999999999999999875
Q ss_pred CcccEEEEEee------ec-----cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 94 PLQWKLCKSFE------ST-----STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 94 ~~~~~~~~~~~------~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
..+..+. .+ ...|+++.|+. +|..+++|+.+|.|.|||+++..++ ...-.....+|.
T Consensus 208 ----srv~~l~~~~~v~s~pg~~~~~svTal~F~d--~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~e~pi~- 275 (703)
T KOG2321|consen 208 ----SRVGTLDAASSVNSHPGGDAAPSVTALKFRD--DGLHVAVGTSTGSVLIYDLRASKPL-----LVKDHGYELPIK- 275 (703)
T ss_pred ----hhheeeecccccCCCccccccCcceEEEecC--CceeEEeeccCCcEEEEEcccCCce-----eecccCCcccee-
Confidence 3333322 12 23489999987 8999999999999999999984221 111112222333
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
.+.|.+... ...+++... ..++|||-.+++..... + -+..++++++-|+.|.
T Consensus 276 ---------~l~~~~~~~---q~~v~S~Dk------~~~kiWd~~~Gk~~asi----E----pt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 276 ---------KLDWQDTDQ---QNKVVSMDK------RILKIWDECTGKPMASI----E----PTSDLNDFCFVPGSGM 327 (703)
T ss_pred ---------eecccccCC---CceEEecch------HHhhhcccccCCceeec----c----ccCCcCceeeecCCce
Confidence 788988743 225555544 89999998887633222 2 2336999999999873
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=7.3e-12 Score=94.39 Aligned_cols=185 Identities=15% Similarity=0.283 Sum_probs=121.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
.+..++|++.-.-+|++..|-.|++|+-... +...++ .....|.+++|-|. .+..|+.++.. -|++|....
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst------~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~ 171 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST------CPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSR 171 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC------CCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCc
Confidence 6778999997788999999999999998632 222332 22456999999887 34577777765 488998653
Q ss_pred ccCCCc-----ccEEEE--EeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295 90 EDAQPL-----QWKLCK--SFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 90 ~~~~~~-----~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
...... .-.+.+ ..++| ..|+++.|.+ +|..+++++ .|..|.|||..+. ..+.-.....+.++
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg------~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTG------QKIPLIPKGLGGFS 242 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCC------CcccccccCCCcee
Confidence 211000 001111 12234 7899999988 999998887 5678999999873 22211111122222
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
-+.|+|++. +|..+..| +..++|+.... |....-.. -++.|...+|+|+|-
T Consensus 243 ----------lLkwSPdgd-----~lfaAt~d-----avfrlw~e~q~---wt~erw~l----gsgrvqtacWspcGs 293 (445)
T KOG2139|consen 243 ----------LLKWSPDGD-----VLFAATCD-----AVFRLWQENQS---WTKERWIL----GSGRVQTACWSPCGS 293 (445)
T ss_pred ----------eEEEcCCCC-----EEEEeccc-----ceeeeehhccc---ceecceec----cCCceeeeeecCCCC
Confidence 788999998 88888888 99999965331 22211111 222899999999984
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.1e-11 Score=99.31 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=111.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
+..+...+.+.+|+|+|+.|+..+.+ ..|.+|++... ..+.+. ...+......|+|+ |+.++ +.+.++
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~~l~---~~~g~~~~~~~SpD--G~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---QRELVA---SFRGINGAPSFSPD--GRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---CEEEec---cCCCCccCceECCC--CCEEEEEEeCCC
Confidence 45566678899999999999988743 46999999733 223332 23344557899999 88665 445555
Q ss_pred --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEE--EecCcccccceeEEeeeec
Q 026295 81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVY--ELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw--~~~~~~~~~~~~~~~~~~~ 155 (240)
.|.+||+..+ . ...+..+.......+|+| +|..|+..+ .+|...+| ++.+ .+. ..+..
T Consensus 271 ~~~Iy~~d~~~g-------~-~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~------g~~-~~lt~ 333 (433)
T PRK04922 271 NPEIYVMDLGSR-------Q-LTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASG------GSA-ERLTF 333 (433)
T ss_pred CceEEEEECCCC-------C-eEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC------CCe-EEeec
Confidence 5888888654 2 233444444456789999 998887766 34554444 4433 111 11211
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
...... ..+|+|++. .|+....+++. ..|.+|++.++... .+. +.......+|+
T Consensus 334 ~g~~~~----------~~~~SpDG~-----~Ia~~~~~~~~--~~I~v~d~~~g~~~-----~Lt----~~~~~~~p~~s 387 (433)
T PRK04922 334 QGNYNA----------RASVSPDGK-----KIAMVHGSGGQ--YRIAVMDLSTGSVR-----TLT----PGSLDESPSFA 387 (433)
T ss_pred CCCCcc----------CEEECCCCC-----EEEEEECCCCc--eeEEEEECCCCCeE-----ECC----CCCCCCCceEC
Confidence 111111 678999997 66665543100 26888888665321 221 11134567899
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
||+.
T Consensus 388 pdG~ 391 (433)
T PRK04922 388 PNGS 391 (433)
T ss_pred CCCC
Confidence 9974
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.3e-11 Score=96.70 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=126.8
Q ss_pred ccccceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCC--------C--cEEEE-------------eEeeecCc-----
Q 026295 7 TLDKGTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSS--------S--SFTCN-------------LKTKVHAG----- 57 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~--------~--~~~~~-------------~~~~~h~~----- 57 (240)
.|...-+.|..+|||+| +|+|.+--.|++||+.+-.- . ...++ +.+.-|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 35677889999999986 66777888999999873210 0 00000 11111110
Q ss_pred ------cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295 58 ------AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG 131 (240)
Q Consensus 58 ------~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 131 (240)
.-.+++++.. ..-|+.++....|.-+++..+ .-+..+......++++..++ -..+|++|+.+|
T Consensus 129 ~~RIP~~GRDm~y~~~--scDly~~gsg~evYRlNLEqG-------rfL~P~~~~~~~lN~v~in~--~hgLla~Gt~~g 197 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKP--SCDLYLVGSGSEVYRLNLEQG-------RFLNPFETDSGELNVVSINE--EHGLLACGTEDG 197 (703)
T ss_pred eeecCcCCccccccCC--CccEEEeecCcceEEEEcccc-------ccccccccccccceeeeecC--ccceEEecccCc
Confidence 1124444433 322444444456776777766 77777777778899999988 777799999999
Q ss_pred cEEEEEecCcccccceeEEeeeecccc-eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 132 HVKVYELLDPLILKNWQLQAEFQNAID-SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.|.+||.+.- ..+..+..... .-.+.+.....++++.|+-++- .+++|.++ |.|.|||+++..
T Consensus 198 ~VEfwDpR~k------srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-----~~aVGts~-----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 VVEFWDPRDK------SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-----HVAVGTST-----GSVLIYDLRASK 261 (703)
T ss_pred eEEEecchhh------hhheeeecccccCCCccccccCcceEEEecCCce-----eEEeeccC-----CcEEEEEcccCC
Confidence 9999999973 32323222111 1123333444566999998876 79999999 999999999865
Q ss_pred CCcceeEeeecCCCCCCceEEEEEecC
Q 026295 211 NRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 211 ~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..... -| +-.-+|..+.|.+.
T Consensus 262 pl~~k-----dh-~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 262 PLLVK-----DH-GYELPIKKLDWQDT 282 (703)
T ss_pred ceeec-----cc-CCccceeeeccccc
Confidence 44222 11 23447888888665
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.3e-11 Score=94.42 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=114.1
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCC-C-EE-EEEecC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFG-D-AV-ACICSD 79 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~-~-~l-~s~~~d 79 (240)
...|...|.++.|+|||++|++-+.| ..+||+.. ++..+.... .-........|+.+..+ . ++ +....-
T Consensus 182 e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-----~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 182 EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-----TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG 255 (398)
T ss_pred hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-----cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCC
Confidence 45688899999999999999999999 99999998 333333322 12233455667665111 2 22 233334
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAID 158 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~ 158 (240)
+.|+.|++...... .+...+........|.+++.++ +|++++.|+.||.|.|++..+ .+..+-. +.|..
T Consensus 256 ~~v~~~~~~~w~~~--~~l~~~~~~~~~~siSsl~VS~--dGkf~AlGT~dGsVai~~~~~------lq~~~~vk~aH~~ 325 (398)
T KOG0771|consen 256 GGVRLCDISLWSGS--NFLRLRKKIKRFKSISSLAVSD--DGKFLALGTMDGSVAIYDAKS------LQRLQYVKEAHLG 325 (398)
T ss_pred CceeEEEeeeeccc--cccchhhhhhccCcceeEEEcC--CCcEEEEeccCCcEEEEEece------eeeeEeehhhhee
Confidence 56777777543211 0012222222346789999998 999999999999999999876 4544433 34555
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|+ .+.|+|+.. +++.-+++ ..+.|..+.-
T Consensus 326 ~VT----------~ltF~Pdsr-----~~~svSs~-----~~~~v~~l~v 355 (398)
T KOG0771|consen 326 FVT----------GLTFSPDSR-----YLASVSSD-----NEAAVTKLAV 355 (398)
T ss_pred eee----------eEEEcCCcC-----cccccccC-----CceeEEEEee
Confidence 555 999999987 78887877 8888888765
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.38 E-value=8.6e-12 Score=102.11 Aligned_cols=164 Identities=17% Similarity=0.262 Sum_probs=117.1
Q ss_pred ceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEE
Q 026295 11 GTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLW 85 (240)
Q Consensus 11 ~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iw 85 (240)
.+++++|.+. -..++.|+..|.|.-=...+.... ..+....+..|.++|+.+.++|- +. +|++++ |.+|+||
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~g-DW~vriW 425 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVG-DWTVRIW 425 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC--ccceeeeec-cceeEec
Confidence 6889999984 468999999999876333221100 11234455678999999999997 54 455554 9999999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
...... .++..+..+...+++++|||.+ ...|+++..||.+.+||+.... ..++...........
T Consensus 426 s~~~~~------~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDLl~~~----~~Pv~s~~~~~~~l~---- 490 (555)
T KOG1587|consen 426 SEDVIA------SPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDLLQDD----EEPVLSQKVCSPALT---- 490 (555)
T ss_pred cccCCC------CcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhhhccc----cCCcccccccccccc----
Confidence 986221 6777777777889999999953 3458889999999999998632 222222222222222
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.+.|++.+. +|++|... |.+++|++..
T Consensus 491 ------~~~~s~~g~-----~lavGd~~-----G~~~~~~l~~ 517 (555)
T KOG1587|consen 491 ------RVRWSPNGK-----LLAVGDAN-----GTTHILKLSE 517 (555)
T ss_pred ------eeecCCCCc-----EEEEecCC-----CcEEEEEcCc
Confidence 788999887 89999998 9999999964
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.4e-10 Score=94.34 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=110.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~ 80 (240)
+..+...+...+|+|||+.|+..+. +..|.+|++... ..+.+..+.+ .+..+.|+|+ |+.|+.. ..++
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G---~~~~l~~~~~---~~~~~~~SPD--G~~La~~~~~~g 265 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPR---HNGAPAFSPD--GSKLAFALSKTG 265 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---CeEEccCCCC---CcCCeEECCC--CCEEEEEEcCCC
Confidence 3345567889999999999887642 356889998732 2334443433 3456899999 9877754 4455
Q ss_pred --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-CcEEEEEecCcccccceeEEeeeeccc
Q 026295 81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.|.+||+..+ .. ..+......+....|+| +|+.|+..+.+ +...+|.+.... .+ ...+....
T Consensus 266 ~~~I~~~d~~tg-------~~-~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~----g~-~~~lt~~~ 330 (429)
T PRK03629 266 SLNLYVMDLASG-------QI-RQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNING----GA-PQRITWEG 330 (429)
T ss_pred CcEEEEEECCCC-------CE-EEccCCCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCC----CC-eEEeecCC
Confidence 5788888654 32 23333345677899999 99988776653 555666543210 11 11222111
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.... ...|+|++. +|+..+.+++. ..|.+||+.++.. ..+.. .+ .....+|+||
T Consensus 331 ~~~~----------~~~~SpDG~-----~Ia~~~~~~g~--~~I~~~dl~~g~~-----~~Lt~--~~--~~~~p~~SpD 384 (429)
T PRK03629 331 SQNQ----------DADVSSDGK-----FMVMVSSNGGQ--QHIAKQDLATGGV-----QVLTD--TF--LDETPSIAPN 384 (429)
T ss_pred CCcc----------CEEECCCCC-----EEEEEEccCCC--ceEEEEECCCCCe-----EEeCC--CC--CCCCceECCC
Confidence 1112 678999987 67666544211 3577778766531 12221 11 2346789999
Q ss_pred CC
Q 026295 238 IG 239 (240)
Q Consensus 238 ~~ 239 (240)
+.
T Consensus 385 G~ 386 (429)
T PRK03629 385 GT 386 (429)
T ss_pred CC
Confidence 74
No 221
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.37 E-value=2.4e-11 Score=89.21 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=130.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED 91 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 91 (240)
..++.|++.+..+++...+|.+.+-+.... ..+.++.++.|+-+++...|+.. ..+++.+|+.|+.+..||++...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~---~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM---VLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee---eeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCc
Confidence 346788899999999999999986555432 45566688999999999999765 36889999999999999998432
Q ss_pred CCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295 92 AQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA 171 (240)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (240)
. ...+..+-|...|.+|.-+|. .+.++++|+.|..|++||.|.. ++++..-.. .+.|.
T Consensus 200 ~-----~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm-----~kPl~~~~v-~GGVW---------- 257 (339)
T KOG0280|consen 200 T-----FIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNM-----GKPLFKAKV-GGGVW---------- 257 (339)
T ss_pred c-----eeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcc-----cCccccCcc-ccceE----------
Confidence 1 233335668899999988864 6778999999999999999953 233222111 12333
Q ss_pred eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
.+.++|... ..+|+++.. +-.+|-+.+....+. ...++.+..|.+-.+.-.|
T Consensus 258 Ri~~~p~~~---~~lL~~CMh------~G~ki~~~~~~~~e~--~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 258 RIKHHPEIF---HRLLAACMH------NGAKILDSSDKVLEF--QIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred EEEecchhh---hHHHHHHHh------cCceEEEecccccch--heeeeccccccceeecccc
Confidence 788888764 334555544 667887877665442 2233455567767776666
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=8.1e-11 Score=89.49 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=121.8
Q ss_pred ceEEEEECCCC-CEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEee-------ecCc--cEEEEEEcCCCCCCEEEEEec
Q 026295 11 GTTSSSWNYCG-QRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTK-------VHAG--AILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 11 ~v~~~~~s~~~-~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~-------~h~~--~v~~~~~~~~~~~~~l~s~~~ 78 (240)
.+..+.-++.. ..+|+|+.. ..++|||+... +.+..-+ +-.- -++++.|-+......|++++.
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-----~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-----KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccc-----eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec
Confidence 34445545544 456668888 78999999832 2222211 0111 245778876533468999999
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee-eeccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE-FQNAI 157 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~ 157 (240)
-+.|++||.+.+. +++..|.-.+..++++...| +++++.+|..-|.+..||++. ..+... +.+..
T Consensus 225 ~hqvR~YDt~~qR------RPV~~fd~~E~~is~~~l~p--~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t 290 (412)
T KOG3881|consen 225 YHQVRLYDTRHQR------RPVAQFDFLENPISSTGLTP--SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT 290 (412)
T ss_pred ceeEEEecCcccC------cceeEeccccCcceeeeecC--CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence 9999999998653 68888888889999999988 999999999999999999997 444433 66666
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
+.++ ++..+|... +||+++-| +.|||||..+..
T Consensus 291 Gsir----------sih~hp~~~-----~las~GLD-----RyvRIhD~ktrk 323 (412)
T KOG3881|consen 291 GSIR----------SIHCHPTHP-----VLASCGLD-----RYVRIHDIKTRK 323 (412)
T ss_pred CCcc----------eEEEcCCCc-----eEEeeccc-----eeEEEeecccch
Confidence 6676 899999987 99999999 999999998854
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.5e-11 Score=102.72 Aligned_cols=168 Identities=11% Similarity=0.170 Sum_probs=115.8
Q ss_pred cceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc--EEEEEEcCCCCCC-EEEEEecCCeEEEE
Q 026295 10 KGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA--ILKVVWVPPEFGD-AVACICSDGSLLLW 85 (240)
Q Consensus 10 ~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~-~l~s~~~d~~v~iw 85 (240)
..|+++.-+. .|+.+++|..||.|++||.+-.. ....+...+.|+.. |..+.+.+. |. .+++|+.||.|++|
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~--~ds~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP--PDSLVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCC--ccccceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEE
Confidence 3566665443 46999999999999999987543 22456677788877 999999887 43 48999999999999
Q ss_pred EeeeccCCCcccEEEEEeeec---cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 86 EEIVEDAQPLQWKLCKSFEST---STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
|++.... ....++..+ .+..+++..++ ....+|+|+. +.|+||++.. +.+..+.......
T Consensus 1285 DlR~~~~-----e~~~~iv~~~~yGs~lTal~VH~--hapiiAsGs~-q~ikIy~~~G-------~~l~~~k~n~~F~-- 1347 (1387)
T KOG1517|consen 1285 DLRMSSK-----ETFLTIVAHWEYGSALTALTVHE--HAPIIASGSA-QLIKIYSLSG-------EQLNIIKYNPGFM-- 1347 (1387)
T ss_pred ecccCcc-----cccceeeeccccCccceeeeecc--CCCeeeecCc-ceEEEEecCh-------hhhcccccCcccc--
Confidence 9987411 111122221 23588999977 7888899888 9999999874 2222222211110
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+...-.+.+++|+|... +||+|+.| .+|.||....+
T Consensus 1348 -~q~~gs~scL~FHP~~~-----llAaG~~D-----s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 -GQRIGSVSCLAFHPHRL-----LLAAGSAD-----STVSIYSCEKP 1383 (1387)
T ss_pred -cCcCCCcceeeecchhH-----hhhhccCC-----ceEEEeecCCc
Confidence 11111234899999987 78888777 99999987653
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=4.1e-10 Score=83.69 Aligned_cols=164 Identities=9% Similarity=0.154 Sum_probs=113.2
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCeEEEEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGSLLLWE 86 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd 86 (240)
....|.++.++++ +|++.-. +.|.||....+ .+.++.+.....+---.+..|.....+|+. |-.-|.|+|-|
T Consensus 93 f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n----~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDN----PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred eccceeeEEEcCC--eEEEEec-CeEEEEEcCCC----hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 3457777777654 5666655 68999998743 244444443222211223334422445554 34568999999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE-EEEEecCcccccceeEEeeeecccceeecccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
+..... .....+..|.+.|.+++.+- .|..+|+++..|++ +|||..+ ++.++++......
T Consensus 166 L~~~~~-----~~p~~I~AH~s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~------ 226 (346)
T KOG2111|consen 166 LASTKP-----NAPSIINAHDSDIACVALNL--QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDR------ 226 (346)
T ss_pred hhhcCc-----CCceEEEcccCceeEEEEcC--CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCch------
Confidence 976421 13477889999999999977 99999999999985 8999998 6777777644322
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+.+.+++|+|+.. +||+++.- |+|+||.++..
T Consensus 227 --A~iy~iaFSp~~s-----~LavsSdK-----gTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 --ADIYCIAFSPNSS-----WLAVSSDK-----GTLHIFSLRDT 258 (346)
T ss_pred --heEEEEEeCCCcc-----EEEEEcCC-----CeEEEEEeecC
Confidence 2234999999998 88888877 99999999764
No 225
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.9e-10 Score=90.67 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=123.3
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEE------cCC------------CCCCEEEEE
Q 026295 18 NYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVW------VPP------------EFGDAVACI 76 (240)
Q Consensus 18 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~------~~~------------~~~~~l~s~ 76 (240)
.|.+.++|....||.++||+...+ +....+. .-++...+..| +|. ..-..++-|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~-----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKN-----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCc-----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 355689999999999999999854 2222222 11222333333 221 012356667
Q ss_pred ecCCeEEEEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295 77 CSDGSLLLWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
...|.|.+|++..+ +....+. .|...|.++.++. +-..|.+++.|+.+..|+... ...+....
T Consensus 77 t~~g~v~~ys~~~g-------~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~------~~~~~~~~ 141 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGG-------EITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKE------KVIIRIWK 141 (541)
T ss_pred cCCccEEEEEecCC-------eEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEeccc------ceeeeeec
Confidence 77899999999776 5555554 5888999999876 777899999999999999987 56666666
Q ss_pred cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
.....+. +++.+|++. .|++|+ +.|++|+..+.+ .+.. ++||.++|++++|
T Consensus 142 ~~~~~~~----------sl~is~D~~-----~l~~as-------~~ik~~~~~~ke----vv~~---ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 142 EQKPLVS----------SLCISPDGK-----ILLTAS-------RQIKVLDIETKE----VVIT---FTGHGSPVRTLSF 192 (541)
T ss_pred cCCCccc----------eEEEcCCCC-----EEEecc-------ceEEEEEccCce----EEEE---ecCCCcceEEEEE
Confidence 6655555 899999987 899998 789999998754 3333 4478889999999
Q ss_pred ecC
Q 026295 235 ALN 237 (240)
Q Consensus 235 sp~ 237 (240)
--+
T Consensus 193 ~~~ 195 (541)
T KOG4547|consen 193 TTL 195 (541)
T ss_pred EEe
Confidence 654
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=7.5e-10 Score=82.30 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=88.1
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-EEEEEeeeccCCCccc
Q 026295 20 CGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-LLLWEEIVEDAQPLQW 97 (240)
Q Consensus 20 ~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~ 97 (240)
+..+||.- -.-|.|+|-|+.... ......+..|...|.+++.+.+ |.++|+++..|+ |||||..++
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~---~~~p~~I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g------- 214 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTK---PNAPSIINAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG------- 214 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcC---cCCceEEEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-------
Confidence 34455553 355899999997432 1123567789999999999998 999999999996 799999888
Q ss_pred EEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 98 KLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 98 ~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
.++.+++. ....|.+++|+| +..+|++++..|+|+|+.++..
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEEEEEeecC
Confidence 78888874 457899999999 9999999999999999999864
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.7e-10 Score=93.78 Aligned_cols=182 Identities=14% Similarity=0.156 Sum_probs=107.7
Q ss_pred ccccceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeE
Q 026295 7 TLDKGTTSSSWNYCGQRLATG-STDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSL 82 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~-~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v 82 (240)
.+.+.+...+|+|||++|+.. +.++ .|.+||+.. .+.. .+..+...+....|+|+ |+.|+..+. ++..
T Consensus 240 ~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-----g~~~-~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~ 311 (429)
T PRK03629 240 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-----GQIR-QVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP 311 (429)
T ss_pred CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-----CCEE-EccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence 344455678999999988865 4445 488888873 2222 23333456778999999 988776654 4555
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeecccce
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.||.+....+ . ...+...........|+| +|.+++..+.+ ..|.+||+.+. +. ..+... ..
T Consensus 312 ~Iy~~d~~~g-----~-~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g------~~-~~Lt~~-~~ 375 (429)
T PRK03629 312 QVYKVNINGG-----A-PQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATG------GV-QVLTDT-FL 375 (429)
T ss_pred eEEEEECCCC-----C-eEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCC------Ce-EEeCCC-CC
Confidence 6665432211 1 222222333456788999 99988776543 34777887652 21 122211 01
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
. ....|+|++. .|+.++.+.. ...+.+++++... ...+. +|...+...+|+|-
T Consensus 376 ~----------~~p~~SpDG~-----~i~~~s~~~~--~~~l~~~~~~G~~-----~~~l~---~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 D----------ETPSIAPNGT-----MVIYSSSQGM--GSVLNLVSTDGRF-----KARLP---ATDGQVKFPAWSPY 428 (429)
T ss_pred C----------CCceECCCCC-----EEEEEEcCCC--ceEEEEEECCCCC-----eEECc---cCCCCcCCcccCCC
Confidence 1 1578999997 7877776620 0135556654322 12233 35558999999984
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=2.5e-10 Score=92.76 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=108.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
+..+...+...+|+|+|++|+.+..+ ..|++|++... +. ..+..+.+.+..+.|+|+ |+.|+ +...++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-----~~-~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~ 256 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-----QR-EKVASFPGMNGAPAFSPD--GSKLAVSLSKDG 256 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-----CE-EEeecCCCCccceEECCC--CCEEEEEECCCC
Confidence 44455568889999999999987654 47999998732 22 122334556777999999 88665 444444
Q ss_pred --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecCcccccceeEEeeeec
Q 026295 81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
.|.+|++..+ . ...+..+........|+| ++..|+..+. ++ .|.++++.+ .+. ..+..
T Consensus 257 ~~~i~~~d~~~~-------~-~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~------~~~-~~l~~ 319 (417)
T TIGR02800 257 NPDIYVMDLDGK-------Q-LTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADG------GEV-RRLTF 319 (417)
T ss_pred CccEEEEECCCC-------C-EEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEeec
Confidence 4777777653 2 222333333445678988 9988776654 34 456666553 121 12222
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
...... ...|+|++. +|+....+. ....|.+|++.++. .. .+... . .....+|+
T Consensus 320 ~~~~~~----------~~~~spdg~-----~i~~~~~~~--~~~~i~~~d~~~~~--~~---~l~~~-~---~~~~p~~s 373 (417)
T TIGR02800 320 RGGYNA----------SPSWSPDGD-----LIAFVHREG--GGFNIAVMDLDGGG--ER---VLTDT-G---LDESPSFA 373 (417)
T ss_pred CCCCcc----------CeEECCCCC-----EEEEEEccC--CceEEEEEeCCCCC--eE---EccCC-C---CCCCceEC
Confidence 222222 678999987 677776652 00166777765532 11 11111 1 23456899
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
||+.
T Consensus 374 pdg~ 377 (417)
T TIGR02800 374 PNGR 377 (417)
T ss_pred CCCC
Confidence 9874
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=2.5e-11 Score=102.26 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=117.0
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC
Q 026295 15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP 94 (240)
Q Consensus 15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 94 (240)
+-++++.-++++|+.-+.|.+|+..... .+. .+.+|++.|..+.|+.+ |.++++.+.|.++++|++.+..
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~-~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~--- 208 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDN----KPI-RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSRE--- 208 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccC----Ccc-eecccCCceEEEEEccC--CcEEEEEecCcceeeeeccccc---
Confidence 3456677799999999999999997332 222 57899999999999999 9999999999999999998762
Q ss_pred cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce-eeccccccceeeeE
Q 026295 95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS-VTMFRKASCISASI 173 (240)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~v 173 (240)
......-+|+..|+.++|.| + .+++++.|.+.++|+... .....+..|... +. .+
T Consensus 209 ---~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~-------~~l~~y~~h~g~~iw----------~~ 264 (967)
T KOG0974|consen 209 ---VLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNG-------TQLEVYDEHSGKGIW----------KI 264 (967)
T ss_pred ---ccCcccccccceeEEEEecc--c--eeEEeccceEEEEEeccc-------ceehhhhhhhhccee----------EE
Confidence 22235567999999999998 6 799999999999997653 222255555332 22 56
Q ss_pred EEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 174 SWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 174 ~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
...+... .++|++.| +.+++|++...
T Consensus 265 ~~~~~~~-----~~vT~g~D-----s~lk~~~l~~r 290 (967)
T KOG0974|consen 265 AVPIGVI-----IKVTGGND-----STLKLWDLNGR 290 (967)
T ss_pred EEcCCce-----EEEeeccC-----cchhhhhhhcc
Confidence 6666665 78888888 99999998653
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.9e-10 Score=91.69 Aligned_cols=183 Identities=14% Similarity=0.174 Sum_probs=107.6
Q ss_pred cccceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEE
Q 026295 8 LDKGTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLW 85 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iw 85 (240)
..+.+...+|+|+|+.|+ +.+.++...||.++.. .. ....+..+.+......|+|+ |+.++..+. ++...+|
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~-~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---GS-GLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIY 311 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECC---CC-CcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEE
Confidence 444566889999999887 4677888777766432 11 12334344455667889999 987775543 5677788
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecccceeec
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
.+....+ .. ..+..........+|+| +|++++..+.++ .|.+||+.+. +.. .+... ...
T Consensus 312 ~~~~~~g-----~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g------~~~-~lt~~-~~~-- 373 (427)
T PRK02889 312 RMPASGG-----AA-QRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATG------QVT-ALTDT-TRD-- 373 (427)
T ss_pred EEECCCC-----ce-EEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCC------CeE-EccCC-CCc--
Confidence 7653221 11 11111122344678999 999988777554 5889998752 211 22111 111
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
....|+|++. .|+.++.+. +.-.+|-++.... ....+.. +.+.+...+|+|-
T Consensus 374 --------~~p~~spdg~-----~l~~~~~~~----g~~~l~~~~~~g~---~~~~l~~---~~g~~~~p~wsp~ 425 (427)
T PRK02889 374 --------ESPSFAPNGR-----YILYATQQG----GRSVLAAVSSDGR---IKQRLSV---QGGDVREPSWGPF 425 (427)
T ss_pred --------cCceECCCCC-----EEEEEEecC----CCEEEEEEECCCC---ceEEeec---CCCCCCCCccCCC
Confidence 2678999997 666666553 4444444433221 1222332 3337888999985
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=9e-10 Score=81.10 Aligned_cols=183 Identities=12% Similarity=0.143 Sum_probs=122.4
Q ss_pred ceEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee------cCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 11 GTTSSSWNY---CGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV------HAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 11 ~v~~~~~s~---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
.+..+.|.. +|. .|+-+..+|.|.+|..... .....+.+ ......++.|++. +..++++..+|
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~-----~ss~~L~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G 143 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED-----ESSVHLRGLSSKKISVVEALSLDISTS--GTKIFVSDSRG 143 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccc-----eeeeeecccchhhhhheeeeEEEeecc--CceEEEEcCCC
Confidence 455666653 444 5677778899999987632 22222221 1123457889888 88899998899
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe-eeecccce
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDS 159 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~ 159 (240)
.+.+-+.... ..+..+.++.|.-.++..+|+.. +.+.+.+|+.|+.+..||+|.| .+.+. ..+.|...
T Consensus 144 ~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p-----~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 144 SISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIP-----KTFIWHNSKVHTSG 212 (339)
T ss_pred cEEEEeccee-----eeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCC-----cceeeecceeeecc
Confidence 8885444332 12455678889999999999864 4467999999999999999954 22222 13344444
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
|. ++.=+|.. +.+++||+.| ..|++||.++-.+..... .-.+.|+-+.++|-
T Consensus 213 V~----------SI~ss~~~----~~~I~TGsYD-----e~i~~~DtRnm~kPl~~~-------~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 213 VV----------SIYSSPPK----PTYIATGSYD-----ECIRVLDTRNMGKPLFKA-------KVGGGVWRIKHHPE 264 (339)
T ss_pred eE----------EEecCCCC----CceEEEeccc-----cceeeeehhcccCccccC-------ccccceEEEEecch
Confidence 43 56555554 4499999999 899999998654332221 12348999999984
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=1.2e-11 Score=92.27 Aligned_cols=142 Identities=15% Similarity=0.189 Sum_probs=99.1
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeeccC
Q 026295 14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~ 92 (240)
-.+|||+|+++|+++.- .+.|-|.. +.+..+.+. --..|.-+.|..+ ..+++ ....|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~-----tlq~~qlf~-cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qp-- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSE-----TLQLHQLFL-CLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQP-- 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccc-----hhhHHHHHH-HHHHhhheeeecc--ceeeeeeeeccceEEEEEeecc--
Confidence 46899999999999875 77788876 555443333 2456778999887 65544 4567889999999864
Q ss_pred CCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295 93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA 171 (240)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (240)
+-...+.....++..++|+| +|+ +|.+...+-.|.+|.+.+. +...+ .-....+.
T Consensus 82 -----ew~ckIdeg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~----~~~~~---~~pK~~~k---------- 137 (447)
T KOG4497|consen 82 -----EWYCKIDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQ----KGYLL---PHPKTNVK---------- 137 (447)
T ss_pred -----eeEEEeccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccc----eeEEe---cccccCce----------
Confidence 44456677778999999999 995 5566678889999999862 11111 11111112
Q ss_pred eEEEeCCCCCCCCceEEEEecCCC
Q 026295 172 SISWNPQKGENQGSSFVLGFNSDT 195 (240)
Q Consensus 172 ~v~~~p~~~~~~~~~l~~~~~dd~ 195 (240)
.++|+|++. +.+.++.-|+
T Consensus 138 g~~f~~dg~-----f~ai~sRrDC 156 (447)
T KOG4497|consen 138 GYAFHPDGQ-----FCAILSRRDC 156 (447)
T ss_pred eEEECCCCc-----eeeeeecccH
Confidence 788999987 6676665543
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=1.2e-10 Score=87.53 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=60.7
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC------------ccEEEEEEcCCCCCCEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA------------GAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~~ 77 (240)
+-|.++.|+..|.+||||..+|.|.+|.-.....+.......++.|+ ..|+.+.|.++.....++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 35889999999999999999999999987644322233344444443 457899998885456777778
Q ss_pred cCCeEEEEEeeec
Q 026295 78 SDGSLLLWEEIVE 90 (240)
Q Consensus 78 ~d~~v~iwd~~~~ 90 (240)
.|.+|++|-+...
T Consensus 106 NdktiKlWKi~er 118 (433)
T KOG1354|consen 106 NDKTIKLWKIRER 118 (433)
T ss_pred CCcceeeeeeecc
Confidence 8999999987654
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=4.4e-11 Score=100.83 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=98.7
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEE-eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCN-LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+.+|++.|..+.|+-+|+++++.|+|.++|+|+++. .+.. ....+|.++|..++|.|. .+++++.|.+.+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-----~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-----REVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-----ccccCcccccccceeEEEEeccc----eeEEeccceEEE
Confidence 678999999999999999999999999999999984 3333 356689999999999763 799999999999
Q ss_pred EEEeeeccCCCcccEEEEEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
+|+... ..+..+.+|. ..++.++..+ +....++++.|+.+++|++..
T Consensus 242 vW~~~~--------~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 242 VWGVNG--------TQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccc--------ceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhc
Confidence 997654 4444666654 5688999977 778899999999999999864
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.24 E-value=2e-12 Score=106.71 Aligned_cols=117 Identities=16% Similarity=0.286 Sum_probs=103.3
Q ss_pred eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 50 LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 50 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
..+.+|...|+|+.|... |.++++|+.|..|+||...+. .++...++|...|+.++.+. +..++++++.
T Consensus 184 krLlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~--~n~~iaaaS~ 252 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSS--NNTMIAAASN 252 (1113)
T ss_pred HHHHhhhhheeeeeeccc--cceEeecCccceeeeeeccch-------hhhccCCCCccccchhccch--hhhhhhhccc
Confidence 344589999999999888 999999999999999998776 89999999999999999977 8888999999
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
|..|++|.+.. +.++..+.+|.+.|+ +++|+|-. +.+.| |++++||.+
T Consensus 253 D~vIrvWrl~~------~~pvsvLrghtgavt----------aiafsP~~---------sss~d-----gt~~~wd~r 300 (1113)
T KOG0644|consen 253 DKVIRVWRLPD------GAPVSVLRGHTGAVT----------AIAFSPRA---------SSSDD-----GTCRIWDAR 300 (1113)
T ss_pred CceEEEEecCC------CchHHHHhcccccee----------eeccCccc---------cCCCC-----CceEecccc
Confidence 99999999988 677778889999888 99999964 33444 999999987
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.6e-09 Score=85.38 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=123.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK 98 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 98 (240)
-..++-|...|.|.+|+... ++....+ ..|.+.|.++.++.. -..|.+++.|+.+..|++... .
T Consensus 70 t~~lvlgt~~g~v~~ys~~~-----g~it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-------~ 135 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAG-----GEITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-------V 135 (541)
T ss_pred ceEEEeecCCccEEEEEecC-----CeEEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-------e
Confidence 34788899999999999984 3444444 378999999999887 778999999999999999877 7
Q ss_pred EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCC
Q 026295 99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQ 178 (240)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~ 178 (240)
.++.+......+.+++.+| ++..+++++ ++|++||+++ .+.+..|.+|..+++ +++|-..
T Consensus 136 ~~~~~~~~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~------kevv~~ftgh~s~v~----------t~~f~~~ 195 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISP--DGKILLTAS--RQIKVLDIET------KEVVITFTGHGSPVR----------TLSFTTL 195 (541)
T ss_pred eeeeeccCCCccceEEEcC--CCCEEEecc--ceEEEEEccC------ceEEEEecCCCcceE----------EEEEEEe
Confidence 8888888888999999999 999999887 4899999998 799999999999988 8888776
Q ss_pred CCC-CCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 179 KGE-NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 179 ~~~-~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
-.. ...++|.++..+ ..+.+|-.+.....
T Consensus 196 ~~g~~G~~vLssa~~~-----r~i~~w~v~~~~kk 225 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAE-----RGITVWVVEKEDKK 225 (541)
T ss_pred ccccccceeeeccccc-----cceeEEEEEccccc
Confidence 111 113355566666 88999988775443
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2e-09 Score=87.81 Aligned_cols=181 Identities=16% Similarity=0.191 Sum_probs=103.5
Q ss_pred ccccceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeE
Q 026295 7 TLDKGTTSSSWNYCGQRLA-TGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSL 82 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~-~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v 82 (240)
.+.+...+.+|+|+|+.|+ +.+.++ .|.+||+... + ...+..+........|+|+ |+.++..+ .++..
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-----~-~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~ 316 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-----Q-LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRP 316 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-----C-eEECccCCCCccceEECCC--CCEEEEEECCCCCc
Confidence 3444455789999998775 445555 5888888732 2 2334444455567899999 98877665 45554
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecccce
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.+|.+....+ +. ..+..........+|+| +|++++..+.++ .|.+||+.+ .+.. .+... ..
T Consensus 317 ~iy~~dl~~g-----~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~------g~~~-~Lt~~-~~ 380 (433)
T PRK04922 317 QIYRVAASGG-----SA-ERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLST------GSVR-TLTPG-SL 380 (433)
T ss_pred eEEEEECCCC-----Ce-EEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCC------CCeE-ECCCC-CC
Confidence 5554432211 21 11211223345689999 999888765443 588999865 2222 22211 11
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
.. ...|+|++. .|+..+.+.+ ...|.+++..... ...+.. +.+.+...+|+|
T Consensus 381 ~~----------~p~~spdG~-----~i~~~s~~~g--~~~L~~~~~~g~~-----~~~l~~---~~g~~~~p~wsp 432 (433)
T PRK04922 381 DE----------SPSFAPNGS-----MVLYATREGG--RGVLAAVSTDGRV-----RQRLVS---ADGEVREPAWSP 432 (433)
T ss_pred CC----------CceECCCCC-----EEEEEEecCC--ceEEEEEECCCCc-----eEEccc---CCCCCCCCccCC
Confidence 11 578999997 5666554320 0345555553321 222222 233788899998
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.6e-10 Score=93.34 Aligned_cols=121 Identities=18% Similarity=0.336 Sum_probs=92.6
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC----------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS----------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
....|++|+.+..++|+|+.||.++|..+.... ..+...-+++.+|.+.|.-+.|+.. .+.|.++..+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccCCC
Confidence 468899999999999999999999999875321 1123344677899999999999887 7888899999
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
|.|.+|-+-.+ +|.....-....+.|.+++|.. +|..++....||.|.+=.+.
T Consensus 93 GlIiVWmlykg-----sW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 93 GLIIVWMLYKG-----SWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred ceEEEEeeecc-----cHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeec
Confidence 99999998764 2332222223557788999977 89888888888877665543
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.3e-09 Score=87.51 Aligned_cols=184 Identities=12% Similarity=0.063 Sum_probs=105.6
Q ss_pred hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
+..+...+...+|+|+|++|+..+.+ ..|.+|++... ..+.+... .+.+....|+|+ |+.|+ +...++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~~l~~~---~g~~~~~~~SpD--G~~la~~~~~~g 265 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---RREQITNF---EGLNGAPAWSPD--GSKLAFVLSKDG 265 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---CEEEccCC---CCCcCCeEECCC--CCEEEEEEccCC
Confidence 44566678899999999999877644 35888898733 22333222 344557899999 98776 444555
Q ss_pred --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCc--EEEEEecCcccccceeEEeeeec
Q 026295 81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGH--VKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
.|.++|+..+ . ...+..+........|+| +|..++..+. +|. |.++++.+ .+. ..+..
T Consensus 266 ~~~Iy~~d~~~~-------~-~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~------g~~-~~lt~ 328 (430)
T PRK00178 266 NPEIYVMDLASR-------Q-LSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNG------GRA-ERVTF 328 (430)
T ss_pred CceEEEEECCCC-------C-eEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEeec
Confidence 5777777654 2 223333444556788999 8887766553 444 55555544 121 11111
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
..... ....|+|++. .|+.....++. ..|.+||+.++.. .. +.. .. ......|+
T Consensus 329 ~~~~~----------~~~~~Spdg~-----~i~~~~~~~~~--~~l~~~dl~tg~~--~~---lt~-~~---~~~~p~~s 382 (430)
T PRK00178 329 VGNYN----------ARPRLSADGK-----TLVMVHRQDGN--FHVAAQDLQRGSV--RI---LTD-TS---LDESPSVA 382 (430)
T ss_pred CCCCc----------cceEECCCCC-----EEEEEEccCCc--eEEEEEECCCCCE--EE---ccC-CC---CCCCceEC
Confidence 11111 1567999987 66666544200 2467777766432 11 111 11 22345899
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
||+.
T Consensus 383 pdg~ 386 (430)
T PRK00178 383 PNGT 386 (430)
T ss_pred CCCC
Confidence 9874
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.22 E-value=5.1e-10 Score=96.26 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=118.1
Q ss_pred cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295 45 SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL 124 (240)
Q Consensus 45 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 124 (240)
.+..+..+..|...+..++.+++ .+.+|++|+.||+|++|+.+...+.+...+...++......+.++...+ ++..+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQF 1113 (1431)
T ss_pred cceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeE
Confidence 46788899999999999998876 2589999999999999999876555455566666665668888999988 89999
Q ss_pred EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295 125 VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW 204 (240)
Q Consensus 125 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw 204 (240)
|+++.||.|++.++... +.....+.+.. +....+..+.+..-+|..... ...|+.+..- +.|.+|
T Consensus 1114 Av~t~DG~v~~~~id~~-~~~~~~~~~~r------i~n~~~~g~vv~m~a~~~~~~---S~~lvy~T~~-----~~iv~~ 1178 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHY-NVSKRVATQVR------IPNLKKDGVVVSMHAFTAIVQ---SHVLVYATDL-----SRIVSW 1178 (1431)
T ss_pred EEEcCCCeEEEEEcccc-ccccceeeeee------cccccCCCceEEeeccccccc---ceeEEEEEec-----cceEEe
Confidence 99999999999988752 11111111111 111111222222333333222 2366666666 899999
Q ss_pred EeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
|.+.....|.+...+ ..+.|++++.+|-+
T Consensus 1179 D~r~~~~~w~lk~~~-----~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQL-----RHGLVTSIVIDPWC 1207 (1431)
T ss_pred cchhhhhHHhhhcCc-----cccceeEEEecCCc
Confidence 999988888775443 22389999998865
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=6.9e-09 Score=84.28 Aligned_cols=192 Identities=12% Similarity=0.090 Sum_probs=106.3
Q ss_pred ccccceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC
Q 026295 7 TLDKGTTSSSWNYCGQRLATGST-----DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG 80 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~ 80 (240)
...+.....+|||||++|+..+. +..+.+|++.... ............+.....+|+|+ |+.|+..+ .++
T Consensus 228 ~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~--~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g 303 (428)
T PRK01029 228 ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA--IGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDG 303 (428)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC--CCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCC
Confidence 34445556899999998887653 2234446665321 11222222222234467899999 98777654 467
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
...+|.+...... .....+......+....|+| +|+.|+..+.+ ..|.+||+.+. +.. .+....
T Consensus 304 ~~~ly~~~~~~~g----~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g------~~~-~Lt~~~ 370 (428)
T PRK01029 304 RPRIYIMQIDPEG----QSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATG------RDY-QLTTSP 370 (428)
T ss_pred CceEEEEECcccc----cceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCC------CeE-EccCCC
Confidence 6666655321100 12233333334567889999 99988776543 36888888762 221 222111
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+. ...|+|++. .|+....+.+. ..|.++++.++... .+... .+.+...+|+|-
T Consensus 371 ~~~~----------~p~wSpDG~-----~L~f~~~~~g~--~~L~~vdl~~g~~~-----~Lt~~---~g~~~~p~Ws~~ 425 (428)
T PRK01029 371 ENKE----------SPSWAIDSL-----HLVYSAGNSNE--SELYLISLITKKTR-----KIVIG---SGEKRFPSWGAF 425 (428)
T ss_pred CCcc----------ceEECCCCC-----EEEEEECCCCC--ceEEEEECCCCCEE-----EeecC---CCcccCceecCC
Confidence 1122 688999986 55544332100 46777777654321 12212 225778899997
Q ss_pred CCC
Q 026295 238 IGR 240 (240)
Q Consensus 238 ~~~ 240 (240)
..|
T Consensus 426 ~~~ 428 (428)
T PRK01029 426 PSQ 428 (428)
T ss_pred CCC
Confidence 643
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.5e-10 Score=86.91 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=102.0
Q ss_pred ceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 11 GTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 11 ~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.++.+.|-+. ...||++..-+.+|+||... ..+++..+..-+.++.++...|. +++++++..-+.+..||++
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----qRRPV~~fd~~E~~is~~~l~p~--gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH----QRRPVAQFDFLENPISSTGLTPS--GNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcc----cCcceeEeccccCcceeeeecCC--CcEEEEecccchhheeccc
Confidence 5678889886 78999999999999999984 34678888877899999999999 9999999999999999998
Q ss_pred eccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 89 VEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 89 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
.+ +.... +++..+.|+++..+| .+.++++++.|..|+|+|+.+
T Consensus 278 ~~-------kl~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 278 GG-------KLLGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred Cc-------eeeccccCCccCCcceEEEcC--CCceEEeeccceeEEEeeccc
Confidence 87 55555 788889999999998 899999999999999999987
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=1.8e-08 Score=79.99 Aligned_cols=176 Identities=11% Similarity=0.113 Sum_probs=109.3
Q ss_pred CEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 22 QRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 22 ~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+++ ++-..++.|.|.|.. +.+.+..+......-..+.++|+ |+++++++.|+.|.++|+.+. +.+
T Consensus 6 ~l~~V~~~~~~~v~viD~~-----t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~-------~~v 71 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGA-----TNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATG-------KVV 71 (369)
T ss_dssp GEEEEEEGGGTEEEEEETT-----T-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSS-------SEE
T ss_pred cEEEEEecCCCEEEEEECC-----CCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcc-------cEE
Confidence 344 455567999999998 66778888764444456789999 999999999999999999877 778
Q ss_pred EEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295 101 KSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179 (240)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~ 179 (240)
.+++.. .....+++++ +|+++++++ ..+.+.++|.++ .+++..+........... ..+..+.-+|..
T Consensus 72 ~~i~~G-~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~t------le~v~~I~~~~~~~~~~~---~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 72 ATIKVG-GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAET------LEPVKTIPTGGMPVDGPE---SRVAAIVASPGR 139 (369)
T ss_dssp EEEE-S-SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS------EEEEEE-SSS
T ss_pred EEEecC-CCcceEEEcC--CCCEEEEEecCCCceeEecccc------ccceeecccccccccccC---CCceeEEecCCC
Confidence 888754 4467899999 999888765 689999999987 666666654322110000 111155566776
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
. .+++.-.|. +.|.+-|+...... ....+. ......+..|+|++
T Consensus 140 ~-----~fVv~lkd~----~~I~vVdy~d~~~~--~~~~i~----~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 140 P-----EFVVNLKDT----GEIWVVDYSDPKNL--KVTTIK----VGRFPHDGGFDPDG 183 (369)
T ss_dssp S-----EEEEEETTT----TEEEEEETTTSSCE--EEEEEE------TTEEEEEE-TTS
T ss_pred C-----EEEEEEccC----CeEEEEEecccccc--ceeeec----ccccccccccCccc
Confidence 5 566665543 77777676654322 222222 22367788999886
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=6.8e-09 Score=84.88 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=90.4
Q ss_pred ccccceEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCe-
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTD-G--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGS- 81 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~- 81 (240)
.+...+.+.+|+|+|++|+..+.+ + .|.+||+... ..+.+..+. +......|+|+ |+.|+. ...++.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~~lt~~~---g~~~~~~wSPD--G~~La~~~~~~g~~ 286 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---VREKVTSFP---GINGAPRFSPD--GKKLALVLSKDGQP 286 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---CeEEecCCC---CCcCCeeECCC--CCEEEEEEeCCCCe
Confidence 344567789999999988876543 3 5778887632 223333333 33447899999 887664 566675
Q ss_pred -EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEE--EEecCcccccceeEEeeeeccc
Q 026295 82 -LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKV--YELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 82 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~i--w~~~~~~~~~~~~~~~~~~~~~ 157 (240)
|.++|+..+ + ...+..+........|+| ++.+++..+. ++...+ +|+.+ .+. ..+....
T Consensus 287 ~Iy~~dl~tg-------~-~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~------g~~-~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATK-------A-LTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLAS------GKV-SRLTFEG 349 (448)
T ss_pred EEEEEECCCC-------C-eEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEEecCC
Confidence 555566543 2 233333444567789999 9987766553 444444 45543 121 1121111
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
.... ..+|+|++. +|+..+.++ +..+||-++
T Consensus 350 ~~~~----------~~~~SpDG~-----~l~~~~~~~----g~~~I~~~d 380 (448)
T PRK04792 350 EQNL----------GGSITPDGR-----SMIMVNRTN----GKFNIARQD 380 (448)
T ss_pred CCCc----------CeeECCCCC-----EEEEEEecC----CceEEEEEE
Confidence 1111 568999987 566655442 555565443
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=5.3e-07 Score=71.46 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=122.9
Q ss_pred ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeec-----------CccEEEEEEcCCCCCCEEEEEec
Q 026295 11 GTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVH-----------AGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
.-..++++|++++|+++.. +|.|.++++...+ ..........| ....+++.|+|+ ++++++...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dl 163 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDL 163 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEET
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCc--ccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEec
Confidence 4457899999999999874 7999999998642 22222111111 234789999999 998877644
Q ss_pred -CCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeec
Q 026295 79 -DGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 79 -d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
...|.+|++..... .+.....+. .....-+.+.|+| +++++.+.+ .+++|.++++.... ...+..+.+..
T Consensus 164 G~D~v~~~~~~~~~~---~l~~~~~~~~~~G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~~ 236 (345)
T PF10282_consen 164 GADRVYVYDIDDDTG---KLTPVDSIKVPPGSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTIST 236 (345)
T ss_dssp TTTEEEEEEE-TTS----TEEEEEEEECSTTSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEES
T ss_pred CCCEEEEEEEeCCCc---eEEEeeccccccCCCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccC--CceeEEEEeee
Confidence 34799999875421 122333333 2346678999999 888765554 67889999988311 12344444332
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
...... +. .....+.++|++. +|.++.... +.|.+|+++...........+... ....+.++++
T Consensus 237 ~~~~~~--~~--~~~~~i~ispdg~-----~lyvsnr~~----~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s 300 (345)
T PF10282_consen 237 LPEGFT--GE--NAPAEIAISPDGR-----FLYVSNRGS----NSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFS 300 (345)
T ss_dssp CETTSC--SS--SSEEEEEE-TTSS-----EEEEEECTT----TEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-
T ss_pred cccccc--cc--CCceeEEEecCCC-----EEEEEeccC----CEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEe
Confidence 211111 11 1223899999997 666666544 899999996554444455544432 2257999999
Q ss_pred cCCC
Q 026295 236 LNIG 239 (240)
Q Consensus 236 p~~~ 239 (240)
|++.
T Consensus 301 ~~g~ 304 (345)
T PF10282_consen 301 PDGR 304 (345)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9874
No 246
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=86.06 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=77.7
Q ss_pred cceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLLLWEE 87 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~iwd~ 87 (240)
+.|.-+.|..+..+++++ ..|+.|.+|++..+ .+ ...+..-..++..++|+|+ | .+|.+...|-.|.+|.+
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew--~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EW--YCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSL 121 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc---ee--EEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEe
Confidence 456678898888766654 67789999999854 33 3455555678999999999 8 56667777889999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
.+. ...-++-....+..++|+| +|++.+.+++
T Consensus 122 ~t~--------~~~~~~~pK~~~kg~~f~~--dg~f~ai~sR 153 (447)
T KOG4497|consen 122 NTQ--------KGYLLPHPKTNVKGYAFHP--DGQFCAILSR 153 (447)
T ss_pred ccc--------eeEEecccccCceeEEECC--CCceeeeeec
Confidence 873 4444455556778899988 9998887764
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.9e-08 Score=82.19 Aligned_cols=159 Identities=12% Similarity=0.136 Sum_probs=96.4
Q ss_pred CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---CCeEEEEEeeeccCCCcccEEEEEeeecc
Q 026295 31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---DGSLLLWEEIVEDAQPLQWKLCKSFESTS 107 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 107 (240)
..|.++|.... ....+..|...+....|+|+ |+.|+..+. +..|.+||+..+ .. ..+....
T Consensus 182 ~~l~~~d~dg~------~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g-------~~-~~l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQDGA------NVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETG-------QR-ELVGNFP 245 (435)
T ss_pred eEEEEECCCCC------CcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCC-------cE-EEeecCC
Confidence 36778887532 22344467788999999999 998877653 458999999765 22 2333344
Q ss_pred ccEEeEEEeecCCCcEEE-EEeCCCc--EEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCC
Q 026295 108 TQVLDVQFGVSSTSLKLV-AAYSDGH--VKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQG 184 (240)
Q Consensus 108 ~~v~~~~~~~~~~~~~l~-~~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~ 184 (240)
..+....|+| +|..|+ +.+.++. |.+||+.+ .+. ..+..+..... ...|+|++.
T Consensus 246 g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d~~~------~~~-~~Lt~~~~~~~----------~~~~spDG~---- 302 (435)
T PRK05137 246 GMTFAPRFSP--DGRKVVMSLSQGGNTDIYTMDLRS------GTT-TRLTDSPAIDT----------SPSYSPDGS---- 302 (435)
T ss_pred CcccCcEECC--CCCEEEEEEecCCCceEEEEECCC------Cce-EEccCCCCccC----------ceeEcCCCC----
Confidence 5667889999 998765 5555665 55567654 222 23333222222 678999987
Q ss_pred ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 185 SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 185 ~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
.|+..+..++. ..|+++++.++.. ..+.. +...+....|+||+.
T Consensus 303 -~i~f~s~~~g~--~~Iy~~d~~g~~~-----~~lt~---~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 303 -QIVFESDRSGS--PQLYVMNADGSNP-----RRISF---GGGRYSTPVWSPRGD 346 (435)
T ss_pred -EEEEEECCCCC--CeEEEEECCCCCe-----EEeec---CCCcccCeEECCCCC
Confidence 67766643200 2566666544321 11221 123567788999984
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.4e-10 Score=91.06 Aligned_cols=174 Identities=11% Similarity=0.203 Sum_probs=119.2
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
+.+|.+.|+.++--.+.+-+++++.|++|++|.+...+.+ +-.+..++..|+.+|+++.|-.+ -++++++ |+-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIASC--DGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeeec--cCcc
Confidence 5678888888876667788999999999999999754322 44577788899999999999877 6677665 8999
Q ss_pred EEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
++||.--+ .++..+.. ..+.+..+..-|+.+..++.+ ++...+|+++|.+.. +...+++....+
T Consensus 807 HlWDPFig-------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------e~~~E~kVcna~ 873 (1034)
T KOG4190|consen 807 HLWDPFIG-------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------EWTCELKVCNAP 873 (1034)
T ss_pred eeeccccc-------chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc------cceeeEEeccCC
Confidence 99997554 44433321 223444455545323444444 478889999999973 333333322111
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.+ ...+.+++..|.++ .++.|-+. |.|-+.|.+++.
T Consensus 874 ~P-----na~~R~iaVa~~GN-----~lAa~LSn-----Gci~~LDaR~G~ 909 (1034)
T KOG4190|consen 874 GP-----NALTRAIAVADKGN-----KLAAALSN-----GCIAILDARNGK 909 (1034)
T ss_pred CC-----chheeEEEeccCcc-----hhhHHhcC-----CcEEEEecCCCc
Confidence 00 01123788888887 79999888 999999998875
No 249
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.09 E-value=3e-09 Score=81.43 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=104.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC---eEEEEEe
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG---SLLLWEE 87 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~ 87 (240)
++..+..++.+++||++..+....++++..+.. ..+++.....- ..-+.+.|... ......+..-| .+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-KRPTAISFIRE--DTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-cCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence 344556788999999999988888888875532 23443333321 22233333333 33333333333 4444444
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceeeccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVTMFRKA 166 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~ 166 (240)
.. .+...+-+|-+-+..++|+| |+++++++..|..|++-..... -.+..+ -+|..-|+
T Consensus 140 ~~--------~~~~~~lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS----- 198 (390)
T KOG3914|consen 140 DS--------GRCEPILGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVS----- 198 (390)
T ss_pred cc--------cCcchhhhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcc------cchhhhccccHhhee-----
Confidence 32 23344557889999999999 9999999999999998776542 222233 25666666
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
.++.-++. .|++|+.| ++|++||+.++...
T Consensus 199 -----~isl~~~~------~LlS~sGD-----~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 -----TISLTDNY------LLLSGSGD-----KTLRLWDITSGKLL 228 (390)
T ss_pred -----eeeeccCc------eeeecCCC-----CcEEEEecccCCcc
Confidence 77776665 58999998 99999999987654
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.08 E-value=8.8e-07 Score=70.22 Aligned_cols=201 Identities=10% Similarity=0.086 Sum_probs=123.2
Q ss_pred ceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEE
Q 026295 11 GTTSSSWNYCGQRLATGST----DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLW 85 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iw 85 (240)
....++++|++++|.+..+ ++.|..|++.... +..+.+............++++|+ +.+++++. .+|.|.++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEE
Confidence 4456889999999999877 4689999887541 155666666544556678999999 99888876 48899999
Q ss_pred EeeeccCCCcccEEEEEee----------eccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeee
Q 026295 86 EEIVEDAQPLQWKLCKSFE----------STSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
++..... --.....+. .......++.|+| +++++++.. ....|.+|++...... ......+.
T Consensus 115 ~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~--l~~~~~~~ 187 (345)
T PF10282_consen 115 PLDDDGS---LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGK--LTPVDSIK 187 (345)
T ss_dssp EECTTSE---EEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-T--EEEEEEEE
T ss_pred EccCCcc---cceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCce--EEEeeccc
Confidence 9975310 001111121 1234567899999 999877764 3347999998753211 12222222
Q ss_pred cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-C--CCCceEE
Q 026295 155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE-D--RSDEVYA 231 (240)
Q Consensus 155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~--h~~~v~~ 231 (240)
.. ..+....+.|+|++. ++.+....+ +.|.+|++......+.....+.... + .......
T Consensus 188 ~~---------~G~GPRh~~f~pdg~-----~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 188 VP---------PGSGPRHLAFSPDGK-----YAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp CS---------TTSSEEEEEE-TTSS-----EEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred cc---------cCCCCcEEEEcCCcC-----EEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 21 112234899999987 565555544 9999999994443444443333221 1 1226788
Q ss_pred EEEecCCC
Q 026295 232 VAWALNIG 239 (240)
Q Consensus 232 v~~sp~~~ 239 (240)
|+++||+.
T Consensus 250 i~ispdg~ 257 (345)
T PF10282_consen 250 IAISPDGR 257 (345)
T ss_dssp EEE-TTSS
T ss_pred EEEecCCC
Confidence 99999973
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.08 E-value=5.1e-08 Score=77.49 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=98.4
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeecc
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVED 91 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~ 91 (240)
..+.|+|||+++.+++.||.|.++|+. +.+.+.+++. ......++++++ |++++++. ..+.+.++|.++.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~-----~~~~v~~i~~-G~~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tl- 110 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLA-----TGKVVATIKV-GGNPRGIAVSPD--GKYVYVANYEPGTVSVIDAETL- 110 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETT-----SSSEEEEEE--SSEEEEEEE--T--TTEEEEEEEETTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECC-----cccEEEEEec-CCCcceEEEcCC--CCEEEEEecCCCceeEeccccc-
Confidence 457899999999999999999999998 5567777775 345678999999 99888765 5889999998766
Q ss_pred CCCcccEEEEEeeec-------cccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 92 AQPLQWKLCKSFEST-------STQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 92 ~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
++++.+... ...+..+..+| ....++.. -..+.|.+-|.....+ .....+... ....
T Consensus 111 ------e~v~~I~~~~~~~~~~~~Rv~aIv~s~--~~~~fVv~lkd~~~I~vVdy~d~~~----~~~~~i~~g-~~~~-- 175 (369)
T PF02239_consen 111 ------EPVKTIPTGGMPVDGPESRVAAIVASP--GRPEFVVNLKDTGEIWVVDYSDPKN----LKVTTIKVG-RFPH-- 175 (369)
T ss_dssp -------EEEEEE--EE-TTTS---EEEEEE-S--SSSEEEEEETTTTEEEEEETTTSSC----EEEEEEE---TTEE--
T ss_pred ------cceeecccccccccccCCCceeEEecC--CCCEEEEEEccCCeEEEEEeccccc----cceeeeccc-cccc--
Confidence 677766532 34566777777 66644444 4457777777665311 111222221 1122
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
...|+|++. +++++...+ +.|-++|..+.
T Consensus 176 --------D~~~dpdgr-----y~~va~~~s----n~i~viD~~~~ 204 (369)
T PF02239_consen 176 --------DGGFDPDGR-----YFLVAANGS----NKIAVIDTKTG 204 (369)
T ss_dssp --------EEEE-TTSS-----EEEEEEGGG----TEEEEEETTTT
T ss_pred --------ccccCcccc-----eeeeccccc----ceeEEEeeccc
Confidence 788999986 666654333 88999987654
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.8e-08 Score=80.79 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=102.6
Q ss_pred ccceEEEEECCCCCEEE---EEeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC--
Q 026295 9 DKGTTSSSWNYCGQRLA---TGSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG-- 80 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~---~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~-- 80 (240)
...+.+=+|+|||+.++ +...++. |.+.++... ..+.+..+. +......|+|+ |+.|+..+. +|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~~~---g~~~~p~wSPD--G~~Laf~s~~~g~~ 255 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILALQ---GNQLMPTFSPR--KKLLAFISDRYGNP 255 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeecCC---CCccceEECCC--CCEEEEEECCCCCc
Confidence 34456679999997532 4444444 666666533 333444343 34456899999 988776542 23
Q ss_pred --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.+.+|++..+... ...+............+|+| +|..|+..+ .+|...+|.+..... ......+....
T Consensus 256 di~~~~~~~~~g~~g----~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~---g~~~~~lt~~~ 326 (428)
T PRK01029 256 DLFIQSFSLETGAIG----KPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPE---GQSPRLLTKKY 326 (428)
T ss_pred ceeEEEeecccCCCC----cceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECccc---ccceEEeccCC
Confidence 3444665432110 22222222223345789999 999777665 467666765532110 11112222221
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..+. ...|+|++. .|+..+.+++. ..|.+||+.++... .+.. ....+....|+||
T Consensus 327 ~~~~----------~p~wSPDG~-----~Laf~~~~~g~--~~I~v~dl~~g~~~-----~Lt~---~~~~~~~p~wSpD 381 (428)
T PRK01029 327 RNSS----------CPAWSPDGK-----KIAFCSVIKGV--RQICVYDLATGRDY-----QLTT---SPENKESPSWAID 381 (428)
T ss_pred CCcc----------ceeECCCCC-----EEEEEEcCCCC--cEEEEEECCCCCeE-----EccC---CCCCccceEECCC
Confidence 2222 678999997 67666543211 46888888765422 1211 1125677899999
Q ss_pred CC
Q 026295 238 IG 239 (240)
Q Consensus 238 ~~ 239 (240)
+.
T Consensus 382 G~ 383 (428)
T PRK01029 382 SL 383 (428)
T ss_pred CC
Confidence 74
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=4.3e-10 Score=84.48 Aligned_cols=89 Identities=13% Similarity=0.296 Sum_probs=73.8
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
++.+|.+.+.+++|.+..++|.+|..|..+.+||+-.. + .....+.+|...|..+++.+. -..+.+++.||.|.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~---~-g~~~el~gh~~kV~~l~~~~~--t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR---K-GTAYELQGHNDKVQALSYAQH--TRQLISCGEDGGIV 265 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC---c-ceeeeeccchhhhhhhhhhhh--heeeeeccCCCeEE
Confidence 46789999999999999999999999999999999754 2 345567789999999998877 78899999999999
Q ss_pred EEEeeeccCCCcccE
Q 026295 84 LWEEIVEDAQPLQWK 98 (240)
Q Consensus 84 iwd~~~~~~~~~~~~ 98 (240)
+|+......+.++|.
T Consensus 266 ~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 266 VWNMNVKRVETPEWL 280 (404)
T ss_pred EEeccceeecCcccc
Confidence 999876544334443
No 254
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=7.7e-10 Score=83.24 Aligned_cols=131 Identities=10% Similarity=0.098 Sum_probs=100.8
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.+.|.++.|...++++..|..+|.|..+|+....++...+...+. |...|++++.-.. .+++|++.+.+|+|++||++
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhcc-ccceEeeccCcCceeEeeeh
Confidence 357888899999999999999999999999866555555655554 8899999887552 27888899999999999998
Q ss_pred eccCCCcccEE---EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295 89 VEDAQPLQWKL---CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 89 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
.- ++ +.++.+|...-.-+-++-++....+++++.|...+||.+.. +.+..++.
T Consensus 330 ~~-------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~------ghLl~tip 385 (425)
T KOG2695|consen 330 AT-------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS------GHLLCTIP 385 (425)
T ss_pred hh-------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc------CceeeccC
Confidence 75 55 78888875554444444333666788899999999999987 55555543
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=4.6e-07 Score=68.98 Aligned_cols=198 Identities=11% Similarity=0.059 Sum_probs=124.7
Q ss_pred EEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCcc----------EEEEEEcCCCCCCEEEEEecC-C
Q 026295 13 TSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGA----------ILKVVWVPPEFGDAVACICSD-G 80 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~~~d-~ 80 (240)
.-++++++|++|+++... |.|.++-+...+ .......+..|.+. +....+.|+ ++++++...- -
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTD 167 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCC--ccccceeeeecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCc
Confidence 678999999999999765 789999987543 22223223345555 889999999 9988887542 2
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccce
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDS 159 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.|.+|++..+.- .-.....+ .....-+.|.|+| ++++..+.+ .+++|.+|..... ..+.+.++.+......
T Consensus 168 ri~~y~~~dg~L---~~~~~~~v-~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 168 RIFLYDLDDGKL---TPADPAEV-KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPED 239 (346)
T ss_pred eEEEEEcccCcc---cccccccc-CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccc
Confidence 688999874411 00111111 3456678999999 998765544 6899999998763 3334555544433222
Q ss_pred eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.. +...+ .++..+|++. +|.++.... ..|-+|.+.....+........ .+...-+++.|+|++
T Consensus 240 F~--g~~~~--aaIhis~dGr-----FLYasNRg~----dsI~~f~V~~~~g~L~~~~~~~---teg~~PR~F~i~~~g 302 (346)
T COG2706 240 FT--GTNWA--AAIHISPDGR-----FLYASNRGH----DSIAVFSVDPDGGKLELVGITP---TEGQFPRDFNINPSG 302 (346)
T ss_pred cC--CCCce--eEEEECCCCC-----EEEEecCCC----CeEEEEEEcCCCCEEEEEEEec---cCCcCCccceeCCCC
Confidence 21 11222 2788999997 666665433 6888998877654433333222 122345777777765
No 256
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.02 E-value=2.8e-09 Score=55.93 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=36.9
Q ss_pred EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 46 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
++++.++.+|.+.|.+++|+|+ +.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 4678899999999999999999 99999999999999997
No 257
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.7e-08 Score=83.70 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=111.9
Q ss_pred hcccccceEEEEECCC-------------CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC---C
Q 026295 5 VATLDKGTTSSSWNYC-------------GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP---E 68 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~-------------~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~ 68 (240)
+-+|.++|.-..+... |.++++|+.||+|.|..+. +.+...++.- ..++.+++++|+ +
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~-----~~~~~~~~df-~rpiksial~Pd~~~~ 127 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLF-----TDDEITQYDF-KRPIKSIALHPDFSRQ 127 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeecc-----CCccceeEec-CCcceeEEeccchhhh
Confidence 4457777666655544 9999999999999999887 3344444443 478999999997 3
Q ss_pred CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295 69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ 148 (240)
Q Consensus 69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~ 148 (240)
...++++|+..| +.++.-.--.. +.........+.|.++.| .|.++|=++.+| |++||+.+. +
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgn-----k~~v~l~~~eG~I~~i~W----~g~lIAWand~G-v~vyd~~~~------~ 190 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGN-----KDSVVLSEGEGPIHSIKW----RGNLIAWANDDG-VKVYDTPTR------Q 190 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcC-----ccceeeecCccceEEEEe----cCcEEEEecCCC-cEEEecccc------c
Confidence 456799999888 66665322110 111134556789999999 788888888887 899999873 3
Q ss_pred EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
.+..+......+++ ....| .+.|.+.. .|+.|..| +|+|..++
T Consensus 191 ~l~~i~~p~~~~R~-e~fpp---hl~W~~~~------~LVIGW~d------~v~i~~I~ 233 (846)
T KOG2066|consen 191 RLTNIPPPSQSVRP-ELFPP---HLHWQDED------RLVIGWGD------SVKICSIK 233 (846)
T ss_pred eeeccCCCCCCCCc-ccCCC---ceEecCCC------eEEEecCC------eEEEEEEe
Confidence 33333322222221 11233 78999988 59999884 89999887
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=8e-08 Score=76.74 Aligned_cols=153 Identities=19% Similarity=0.336 Sum_probs=100.4
Q ss_pred EEEECCCCC-EEEE--EeCCC---------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE--ecC
Q 026295 14 SSSWNYCGQ-RLAT--GSTDG---------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI--CSD 79 (240)
Q Consensus 14 ~~~~s~~~~-~l~~--~~~d~---------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~d 79 (240)
.+.|++-|. +|+. ..-|. ++++.++.. ..+.-.+. -.++|++++|+|. +..|+.+ -+-
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-----~s~~V~L~-k~GPVhdv~W~~s--~~EF~VvyGfMP 293 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-----ESVSVPLL-KEGPVHDVTWSPS--GREFAVVYGFMP 293 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-----ceEEEecC-CCCCceEEEECCC--CCEEEEEEeccc
Confidence 466777664 3333 33333 355555541 12333333 3789999999999 8766654 345
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeecc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
-.+.|+|++. .++..+. +++-.++-|+| .|++++.++.+ |.+-|||..+ .+++..+...
T Consensus 294 Akvtifnlr~--------~~v~df~--egpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n------~K~i~~~~a~ 355 (566)
T KOG2315|consen 294 AKVTIFNLRG--------KPVFDFP--EGPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPN------RKLIAKFKAA 355 (566)
T ss_pred ceEEEEcCCC--------CEeEeCC--CCCccceEECC--CCCEEEEeecCCCCCceEEEeccc------hhhccccccC
Confidence 5899999975 5666654 35667789999 99998887744 8899999987 5666555443
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC-CCCCCCeEEEEEeecC
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS-DTPQLNSSKVWEFDEA 209 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d-d~~~~~~i~iw~~~~~ 209 (240)
... -+.|+|++. +|+|+... --+-++.++||++...
T Consensus 356 ~tt------------~~eW~PdGe-----~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 356 NTT------------VFEWSPDGE-----YFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred Cce------------EEEEcCCCc-----EEEEEeccccEEecCCeEEEEecCc
Confidence 221 467999998 89888753 0000088999998753
No 259
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=3.5e-09 Score=55.53 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=37.0
Q ss_pred cEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295 97 WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137 (240)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 137 (240)
|+++..+.+|...|.+++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~--~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP--DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence 478899999999999999999 899999999999999997
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=9.6e-10 Score=90.29 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=97.8
Q ss_pred hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+-+|..+|+.+-|+|+. ..||+++.|..+..||+..+ ..++..+.........++|+-. .+..+++ +....|.
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----~~p~ys~~~w~s~asqVkwnyk-~p~vlas-shg~~i~ 183 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----HRPFYSTSSWRSAASQVKWNYK-DPNVLAS-SHGNDIF 183 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCC----CcceeeeecccccCceeeeccc-Ccchhhh-ccCCceE
Confidence 45688899999999976 68999999999999999853 3556666655667788999865 3555554 4566899
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
+||++.+. .++..+++|...|..++|.....+ .+.+++.||+|++||....
T Consensus 184 vwd~r~gs------~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 184 VWDLRKGS------TPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EEeccCCC------cceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeeccccc
Confidence 99998764 678888889999999999653233 4889999999999998764
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.93 E-value=1.8e-07 Score=76.09 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=89.1
Q ss_pred cccccceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC-
Q 026295 6 ATLDKGTTSSSWNYCGQRLAT-GSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG- 80 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~-~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~- 80 (240)
..+.+.+.+++|+|+|+.|+. .+.++ .|.+|++... . ...+..+........|+|+ |+.|+..+. ++
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-----~-~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~ 301 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-----Q-LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGS 301 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-----C-EEECCCCCCCCCCEEECCC--CCEEEEEECCCCC
Confidence 345556778999999987764 44444 4777887632 2 2223334444557789998 887766543 34
Q ss_pred -eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecc
Q 026295 81 -SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 81 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
.|.++++..+ + ...+......+....|+| ++.+++..+.++ .|.+||+.+. .. ..+...
T Consensus 302 ~~iy~~d~~~~-------~-~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~------~~-~~l~~~ 364 (417)
T TIGR02800 302 PQIYMMDADGG-------E-VRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGG------GE-RVLTDT 364 (417)
T ss_pred ceEEEEECCCC-------C-EEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCC------Ce-EEccCC
Confidence 4555665433 2 223333345567789999 999888888765 6778887651 11 111111
Q ss_pred cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295 157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS 193 (240)
Q Consensus 157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d 193 (240)
. ... ...|+|++. .|+....+
T Consensus 365 ~-~~~----------~p~~spdg~-----~l~~~~~~ 385 (417)
T TIGR02800 365 G-LDE----------SPSFAPNGR-----MILYATTR 385 (417)
T ss_pred C-CCC----------CceECCCCC-----EEEEEEeC
Confidence 1 111 567999987 67666665
No 262
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=2.3e-07 Score=67.99 Aligned_cols=186 Identities=10% Similarity=0.041 Sum_probs=114.0
Q ss_pred EEEECC-----CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 14 SSSWNY-----CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 14 ~~~~s~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.+.|-| ...+||.|+..|...+|.+..+. ........|...|.-+.=.-+. .-.+..++.|.++++.++.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~----~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~ 146 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND----GHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVS 146 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcc----cceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEe
Confidence 345555 23589999999999999987331 1222223343333222211111 1224556778899999887
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (240)
.+.. +....+.. -.+.+++++| ++.++++.+....|-.|.+... .+.+..+.... ..-
T Consensus 147 ~~s~-----~~~~h~~~--~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~-----sey~~~~~~a~--------t~D 204 (344)
T KOG4532|consen 147 GDSN-----KFAVHNQN--LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDE-----SEYIENIYEAP--------TSD 204 (344)
T ss_pred cCcc-----cceeeccc--cceeeeEEcC--CCceEEEecCCCcceEEEeCCc-----cceeeeeEecc--------cCC
Confidence 5421 21111111 2378889998 9999999999999999988753 12221111110 001
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
...+.+|+.... .+|+++.| |++.|||++.......... .....|.++++.+.|+|-+
T Consensus 205 ~gF~~S~s~~~~-----~FAv~~Qd-----g~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 205 HGFYNSFSENDL-----QFAVVFQD-----GTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred CceeeeeccCcc-----eEEEEecC-----CcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCC
Confidence 123788998877 89999999 9999999987543332211 1223478899999999854
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=2.8e-07 Score=75.37 Aligned_cols=179 Identities=14% Similarity=0.147 Sum_probs=98.0
Q ss_pred cccceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCe--
Q 026295 8 LDKGTTSSSWNYCGQRLAT-GSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGS-- 81 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~-~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~-- 81 (240)
..+.+...+|+|+|++|+. .+.++ .|.++|+... +. ..+..+........|+|+ |+.++..+ .++.
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-----~~-~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~ 312 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-----QL-SRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQ 312 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-----Ce-EEcccCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence 3344557899999998874 44555 5777788632 22 223344455667899999 88766554 3444
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-C--cEEEEEecCcccccceeEEeeeecccc
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-G--HVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
|.++++..+ +.. .+...........|+| +|.+++..+.+ + .|.++|+.+. +. ..+... .
T Consensus 313 iy~~d~~~g-------~~~-~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg------~~-~~lt~~-~ 374 (430)
T PRK00178 313 IYKVNVNGG-------RAE-RVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRG------SV-RILTDT-S 374 (430)
T ss_pred EEEEECCCC-------CEE-EeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCC------CE-EEccCC-C
Confidence 555555443 211 1111112334578999 89888776643 3 4677787652 21 112111 0
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
... ...|+|++. .++..+.++ +.-+||-++..... ...+.. +.+.+...+|+|-
T Consensus 375 ~~~----------~p~~spdg~-----~i~~~~~~~----g~~~l~~~~~~g~~---~~~l~~---~~g~~~~p~ws~~ 428 (430)
T PRK00178 375 LDE----------SPSVAPNGT-----MLIYATRQQ----GRGVLMLVSINGRV---RLPLPT---AQGEVREPSWSPY 428 (430)
T ss_pred CCC----------CceECCCCC-----EEEEEEecC----CceEEEEEECCCCc---eEECcC---CCCCcCCCccCCC
Confidence 111 467999987 565555442 44444444332211 112222 2236788899984
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=2.3e-06 Score=63.37 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=106.7
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe---Eee-ecCccEEEEEEcCCCC----CCEEEEEecCCeEE
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL---KTK-VHAGAILKVVWVPPEF----GDAVACICSDGSLL 83 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~-~h~~~v~~~~~~~~~~----~~~l~s~~~d~~v~ 83 (240)
=+.++||||+.+||.+...|+|++||+.+. ....+. .+. .-...|..+.|.+... ...|+....+|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 357999999999999999999999999743 111110 010 1234577777755421 22466667788888
Q ss_pred EEEeeeccCCCcccEEEEEeee---ccccEEeEEEeecCCCcEEEEEeC-CC----------cEEEEEecCcccccceeE
Q 026295 84 LWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQFGVSSTSLKLVAAYS-DG----------HVKVYELLDPLILKNWQL 149 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-dg----------~v~iw~~~~~~~~~~~~~ 149 (240)
-|-+..++. ..++....|.- ....|.++.++| ..+.|++|+. .. -+.-|.+-...+. +++
T Consensus 123 Sy~vs~gt~--q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py--yk~ 196 (282)
T PF15492_consen 123 SYLVSVGTN--QGYQENHSFSFSSHYPHGINSAVYHP--KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY--YKQ 196 (282)
T ss_pred eEEEEcccC--CcceeeEEEEecccCCCceeEEEEcC--CCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--EEE
Confidence 777654332 22344444432 467999999998 7666666552 21 2556665543222 111
Q ss_pred Eeeeecccc------ee---e------ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 150 QAEFQNAID------SV---T------MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 150 ~~~~~~~~~------~v---~------~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+........ .+ . -.+.....+..++.+|++. +||+...+ |.|.+|++..-
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-----~La~ih~s-----G~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-----LLACIHFS-----GSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-----EEEEEEcC-----CeEEEEecCcc
Confidence 111110000 00 0 0011122556899999998 89999988 99999999764
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.88 E-value=3.1e-09 Score=94.82 Aligned_cols=147 Identities=18% Similarity=0.332 Sum_probs=113.6
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe---cCCeEEEEE
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC---SDGSLLLWE 86 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd 86 (240)
..|+.++|+.+|+.+..+..||.+.+|.... ++....+.|.....++.|-. ..+++++ .++.+.+||
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p------k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP------KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCC------cceeccccCCccccceeeee----hhhhccccCCCCCcccchh
Confidence 5688889999999999999999999999873 45666777888888888843 4455543 367899999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
...... . ..+. ..|...++++++.| ..+.|++|+.+|.|.+||++. .++.+.++.
T Consensus 2322 tl~~~~---~-s~v~--~~H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rq------rql~h~~~~----------- 2376 (2439)
T KOG1064|consen 2322 TLLPPM---N-SLVH--TCHDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA----------- 2376 (2439)
T ss_pred cccCcc---c-ceee--eecCCCceEEEEcC--cceEEEecCCcCcEEEeehHH------HHHHHHhhh-----------
Confidence 764421 1 2233 67889999999999 999999999999999999997 455544432
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|+ . +.+|++|+.. |.|+||++....
T Consensus 2377 --------~~-~-----~~~f~~~ss~-----g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 --------LD-T-----REYFVTGSSE-----GNIKIWRLSEFG 2401 (2439)
T ss_pred --------hh-h-----hheeeccCcc-----cceEEEEccccc
Confidence 22 1 2289999999 999999998753
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=2.2e-08 Score=75.61 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=114.1
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-----CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-----AGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
.|+--|+++.++.|+..++++. |-.|.+|++....+ . -.+-.++.+ +.-|++..|+|. .-+.|+-.+..|+
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-s-FnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-S-FNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGT 237 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCC-c-eeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCc
Confidence 4777899999999999998875 57899999985432 1 122233333 345788899887 2456777788899
Q ss_pred EEEEEeeeccC---C------CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295 82 LLLWEEIVEDA---Q------PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE 152 (240)
Q Consensus 82 v~iwd~~~~~~---~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 152 (240)
|++.|++...- - ...-....-|.+-...|..+.|++ +|+++++-.. -+|++||+... ..++..
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--sGryilsRDy-ltvk~wD~nme-----~~pv~t 309 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--SGRYILSRDY-LTVKLWDLNME-----AKPVET 309 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc--CCcEEEEecc-ceeEEEecccc-----CCcceE
Confidence 99999984210 0 000000011122335788899999 9999987665 48999999643 233333
Q ss_pred eecccceee---ccccccc--eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 153 FQNAIDSVT---MFRKASC--ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 153 ~~~~~~~v~---~~~~~~~--~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
++.|..... .....-| .=+.++|+-+.. +++||+.. +.+++|++..+
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-----~v~TGsy~-----n~frvf~~~~g 361 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-----YVMTGSYN-----NVFRVFNLARG 361 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcc-----eEeccccc-----ceEEEecCCCC
Confidence 333322111 0111111 113567887766 89999998 99999996544
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=2.2e-08 Score=75.57 Aligned_cols=150 Identities=13% Similarity=0.215 Sum_probs=97.8
Q ss_pred EeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295 27 GSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST 106 (240)
Q Consensus 27 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 106 (240)
.+.+..|-+-++.. + ....|. ..+.|.+++|... ++++..|+..|.|...|++.+ .++..|....- -|
T Consensus 230 ~G~sqqv~L~nvet-----g-~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~r-nqG~~~~a~rl--yh 297 (425)
T KOG2695|consen 230 VGLSQQVLLTNVET-----G-HQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCR-NQGNGWCAQRL--YH 297 (425)
T ss_pred ccccceeEEEEeec-----c-cccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeec-ccCCCcceEEE--Ec
Confidence 33444555666652 1 122333 4577899999877 899999999999999999865 22233333222 25
Q ss_pred cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCce
Q 026295 107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSS 186 (240)
Q Consensus 107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~ 186 (240)
...|+++..-.. ++++|++.+.+|+|++||++.- ....-+....+|.. ..+..|-...++.-.
T Consensus 298 ~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~---K~~~~V~qYeGHvN-------------~~a~l~~~v~~eeg~ 360 (425)
T KOG2695|consen 298 DSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT---KCKKSVMQYEGHVN-------------LSAYLPAHVKEEEGS 360 (425)
T ss_pred Ccchhhhhhhcc-ccceEeeccCcCceeEeeehhh---hcccceeeeecccc-------------cccccccccccccce
Confidence 677777655321 6778999999999999999861 11222666667643 333444333333336
Q ss_pred EEEEecCCCCCCCeEEEEEeecCC
Q 026295 187 FVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 187 l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
+++++.| ...|||.++.+.
T Consensus 361 I~s~GdD-----cytRiWsl~~gh 379 (425)
T KOG2695|consen 361 IFSVGDD-----CYTRIWSLDSGH 379 (425)
T ss_pred EEEccCe-----eEEEEEecccCc
Confidence 7778887 999999999765
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=1.6e-08 Score=75.41 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=58.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC------------ccEEEEEEcCCCCCCEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA------------GAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~~ 77 (240)
+.|+++.|...|.+|++|...|.|.+|.-.+...-..+-...+++|+ ..|..+.|..+.....++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 46999999999999999999999999987643100122233445553 357889998763334566667
Q ss_pred cCCeEEEEEeeec
Q 026295 78 SDGSLLLWEEIVE 90 (240)
Q Consensus 78 ~d~~v~iwd~~~~ 90 (240)
.|.+|++|-+...
T Consensus 107 NdktiKlWKiyek 119 (460)
T COG5170 107 NDKTIKLWKIYEK 119 (460)
T ss_pred CCceeeeeeeecc
Confidence 8999999987654
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=1e-05 Score=61.86 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=122.4
Q ss_pred ccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSL 82 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v 82 (240)
...+..+-++|+|++++|.++-.+ |.|--|.++... +....+........+-+.++.+++ |++++++.. .|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence 345577889999999999888654 778888887431 144444444433444578999999 998888764 5689
Q ss_pred EEEEeeeccCCCcccEEEEEeeecccc----------EEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEe
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQ----------VLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQA 151 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~ 151 (240)
.++-++... .-+..+..+. |... +....+.| ++++|++... --.|.+|++... .+.... ..
T Consensus 114 ~v~p~~~dG---~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP--~~~~l~v~DLG~Dri~~y~~~dg-~L~~~~-~~ 185 (346)
T COG2706 114 SVYPLQADG---SLQPVVQVVK-HTGSGPHERQESPHVHSANFTP--DGRYLVVPDLGTDRIFLYDLDDG-KLTPAD-PA 185 (346)
T ss_pred EEEEcccCC---ccccceeeee-cCCCCCCccccCCccceeeeCC--CCCEEEEeecCCceEEEEEcccC-cccccc-cc
Confidence 999886531 1122223222 2222 78889999 9998888762 235889998741 111111 11
Q ss_pred eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeec-CCC--CCCc
Q 026295 152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELAL-PED--RSDE 228 (240)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~~--h~~~ 228 (240)
.++ -++....+.|+|++. +..+-.+-+ ++|.+|.+.....+......+.. +++ -..+
T Consensus 186 ~v~-----------~G~GPRHi~FHpn~k-----~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 186 EVK-----------PGAGPRHIVFHPNGK-----YAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ccC-----------CCCCcceEEEcCCCc-----EEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 111 223334899999997 565555544 89999999875433333222211 111 1224
Q ss_pred eEEEEEecCC
Q 026295 229 VYAVAWALNI 238 (240)
Q Consensus 229 v~~v~~sp~~ 238 (240)
..+|..+|||
T Consensus 246 ~aaIhis~dG 255 (346)
T COG2706 246 AAAIHISPDG 255 (346)
T ss_pred eeEEEECCCC
Confidence 5566666665
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=6.1e-07 Score=73.55 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=94.4
Q ss_pred cceEEEEECCCCCEEEE-EeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEE
Q 026295 10 KGTTSSSWNYCGQRLAT-GSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLW 85 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~-~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iw 85 (240)
+.....+|+|+|+.|+. .+.++. |.++|+... + ...+..+........|+|+ |+.++..+ .++...+|
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg-----~-~~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK-----A-LTRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIY 333 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC-----C-eEECccCCCCccceEECCC--CCEEEEEECCCCCceEE
Confidence 34457899999997765 566665 666676522 2 2233334455677899999 88776544 34554555
Q ss_pred --EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEE--EEecCcccccceeEEeeeeccccee
Q 026295 86 --EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKV--YELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 86 --d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~i--w~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
|+..+. ...+ ++.+ ......+|+| +|.+++..+. ++...| +|+.+ .+. ..+.... ..
T Consensus 334 ~~dl~~g~-----~~~L-t~~g--~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~------g~~-~~lt~~~-~d 395 (448)
T PRK04792 334 RVNLASGK-----VSRL-TFEG--EQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLET------GAM-QVLTSTR-LD 395 (448)
T ss_pred EEECCCCC-----EEEE-ecCC--CCCcCeeECC--CCCEEEEEEecCCceEEEEEECCC------CCe-EEccCCC-CC
Confidence 443331 1211 1222 2234568999 8988776654 444444 55544 121 1121111 00
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCe--EEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNS--SKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
....|+|++. .|+....++ +. +.+++.+... ...+.. +.+.+...+|+|-
T Consensus 396 ----------~~ps~spdG~-----~I~~~~~~~----g~~~l~~~~~~G~~-----~~~l~~---~~g~~~~p~Wsp~ 447 (448)
T PRK04792 396 ----------ESPSVAPNGT-----MVIYSTTYQ----GKQVLAAVSIDGRF-----KARLPA---GQGEVKSPAWSPF 447 (448)
T ss_pred ----------CCceECCCCC-----EEEEEEecC----CceEEEEEECCCCc-----eEECcC---CCCCcCCCccCCC
Confidence 1457999987 555555442 44 4555543211 122232 2336788899984
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=9.8e-07 Score=77.85 Aligned_cols=190 Identities=15% Similarity=0.270 Sum_probs=117.0
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------CC----------------C-cEEEE--------
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP------------SS----------------S-SFTCN-------- 49 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~------------~~----------------~-~~~~~-------- 49 (240)
..+..|.+++||||+..|+....++++-+-...=. +. + .++..
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 35678999999999999999998888876542200 00 0 00000
Q ss_pred ------eEeeecCccEEEEEEcCCCCCCEEEEEec---C---CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEee
Q 026295 50 ------LKTKVHAGAILKVVWVPPEFGDAVACICS---D---GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGV 117 (240)
Q Consensus 50 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 117 (240)
..+. +...-..|+|-.+ |.+||+.+. . ..+++|+-+. ....+-....+--..++|.|
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGD--G~yFAVss~~~~~~~~R~iRVy~ReG--------~L~stSE~v~gLe~~l~WrP 266 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGD--GEYFAVSSVEPETGSRRVIRVYSREG--------ELQSTSEPVDGLEGALSWRP 266 (928)
T ss_pred CCccccCccc-cCCCceEEEECCC--CcEEEEEEEEcCCCceeEEEEECCCc--------eEEeccccCCCccCCccCCC
Confidence 0011 2234457899888 999998765 2 4688888652 33222222222335789999
Q ss_pred cCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC
Q 026295 118 SSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD 194 (240)
Q Consensus 118 ~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd 194 (240)
.|.++|+.-. ...|.+|.-+. +..++....+......+. .+.|++++. +||+-..|
T Consensus 267 --sG~lIA~~q~~~~~~~VvFfErNG---LrhgeF~l~~~~~~~~v~----------~l~Wn~ds~-----iLAv~~~~- 325 (928)
T PF04762_consen 267 --SGNLIASSQRLPDRHDVVFFERNG---LRHGEFTLRFDPEEEKVI----------ELAWNSDSE-----ILAVWLED- 325 (928)
T ss_pred --CCCEEEEEEEcCCCcEEEEEecCC---cEeeeEecCCCCCCceee----------EEEECCCCC-----EEEEEecC-
Confidence 9998887764 34566776442 111222222212223333 899999998 89887764
Q ss_pred CCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 195 TPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 195 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.|.+|...+-. |.+..++.-.. ...+..+.|+|-
T Consensus 326 -----~vqLWt~~NYH--WYLKqei~~~~--~~~~~~~~Wdpe 359 (928)
T PF04762_consen 326 -----RVQLWTRSNYH--WYLKQEIRFSS--SESVNFVKWDPE 359 (928)
T ss_pred -----CceEEEeeCCE--EEEEEEEEccC--CCCCCceEECCC
Confidence 59999987754 77777765322 224555899985
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3.4e-07 Score=73.39 Aligned_cols=108 Identities=16% Similarity=0.260 Sum_probs=78.0
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----------C-Ce
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----------D-GS 81 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------d-~~ 81 (240)
+-+.|||.|.+|+|-...| |.+|--. .+..++.+. |. .|..+.|||. ..||++-+. + ..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~-----~f~r~~RF~-Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGE-----SFDRIQRFY-HP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCc-----cHHHHHhcc-CC-CceeeecCCc--cceEEEecCCccccCcccCCCce
Confidence 4689999999999998866 6799655 455555554 54 4889999999 899988543 1 47
Q ss_pred EEEEEeeeccCCCcccEEEEEeeec--ccc-EEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFEST--STQ-VLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~--~~~-v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
++|||+.++ ...+.|... ... -.-..||. ++.++|.-..+ .|.||+..+
T Consensus 284 l~IWDI~tG-------~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 284 LIIWDIATG-------LLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred EEEEEcccc-------chhcceeccCCCccccceEEecc--CCceeEEeccc-eEEEEecCc
Confidence 899999887 666666542 122 23468888 99988887775 578887643
No 273
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.7e-07 Score=74.95 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=87.4
Q ss_pred ccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---CeEE
Q 026295 9 DKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GSLL 83 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~ 83 (240)
+++|.++.|+++++-++++ -+=-.+.|||++. .++..+. +++-+.+-|+|. |++++.++.+ |.+-
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~--egpRN~~~fnp~--g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFP--EGPRNTAFFNPH--GNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCC--CCCccceEECCC--CCEEEEeecCCCCCceE
Confidence 4789999999999876664 3446799999973 3455553 678889999999 9998887754 6899
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe------CCCcEEEEEecC
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY------SDGHVKVYELLD 140 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~v~iw~~~~ 140 (240)
+||+.+. +++..+.. ...+-+.|+| +|++|++++ .|+.++||+...
T Consensus 340 vwDv~n~-------K~i~~~~a--~~tt~~eW~P--dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNR-------KLIAKFKA--ANTTVFEWSP--DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccch-------hhcccccc--CCceEEEEcC--CCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999875 77777765 3456689999 999999987 367799999863
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.79 E-value=4e-07 Score=68.86 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=118.9
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
..+++++.+.++..+|.+|-.+|++.-+.+...- .....++....|...|..+-|+.. ...+++.+.|..+.---.+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf-nkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF-NKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhh-hhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeec
Confidence 3578899999999999999999999988775310 022334444568888888888776 6777777777554322111
Q ss_pred eccC----------------------------------CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295 89 VEDA----------------------------------QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134 (240)
Q Consensus 89 ~~~~----------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 134 (240)
.+.. ......++..+.+|...+.+++|.| ....|.+|..|..|.
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~--~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP--GQRLLFSGASDHSVI 222 (404)
T ss_pred cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC--CCcEEEeccccCceE
Confidence 1100 0112234566778999999999988 888899999999999
Q ss_pred EEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
+||+... .....++..|...++ .++..+... .|.+++.| |.|-+|+...
T Consensus 223 ~wdigg~-----~g~~~el~gh~~kV~----------~l~~~~~t~-----~l~S~~ed-----g~i~~w~mn~ 271 (404)
T KOG1409|consen 223 MWDIGGR-----KGTAYELQGHNDKVQ----------ALSYAQHTR-----QLISCGED-----GGIVVWNMNV 271 (404)
T ss_pred EEeccCC-----cceeeeeccchhhhh----------hhhhhhhhe-----eeeeccCC-----CeEEEEeccc
Confidence 9999642 233445567777666 666555554 68888888 9999999854
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.3e-06 Score=64.06 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=97.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc--cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 23 RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG--AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
.+..++.|.++++.++.... ..+..|.. .+.++.++++ +..+++.+....|..|.+..... ..+
T Consensus 130 ~~~i~sndht~k~~~~~~~s-------~~~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~se-----y~~ 195 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDS-------NKFAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESE-----YIE 195 (344)
T ss_pred ceeeccCCcceeEEEEecCc-------ccceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccc-----eee
Confidence 45556677777777766331 11112333 3788999999 99999999889999998875421 333
Q ss_pred E-EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295 101 K-SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179 (240)
Q Consensus 101 ~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~ 179 (240)
. .....+..=.+..|+. +...+|++..||++.|||++....+ ..+....-..|.+.++ .+.|+|.+
T Consensus 196 ~~~~a~t~D~gF~~S~s~--~~~~FAv~~Qdg~~~I~DVR~~~tp-m~~~sstrp~hnGa~R----------~c~Fsl~g 262 (344)
T KOG4532|consen 196 NIYEAPTSDHGFYNSFSE--NDLQFAVVFQDGTCAIYDVRNMATP-MAEISSTRPHHNGAFR----------VCRFSLYG 262 (344)
T ss_pred eeEecccCCCceeeeecc--CcceEEEEecCCcEEEEEecccccc-hhhhcccCCCCCCceE----------EEEecCCC
Confidence 3 2223334446778876 8888999999999999999863111 1111111123555555 78899866
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.. ..+|.+-.. +.+.+-|+++..
T Consensus 263 ~l--DLLf~sEhf------s~~hv~D~R~~~ 285 (344)
T KOG4532|consen 263 LL--DLLFISEHF------SRVHVVDTRNYV 285 (344)
T ss_pred cc--eEEEEecCc------ceEEEEEcccCc
Confidence 42 323343333 789999988764
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=3.7e-08 Score=81.31 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=117.4
Q ss_pred ceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 11 GTTSSSWNYCG---QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 11 ~v~~~~~s~~~---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
.|-.+.|+|.. ..+++.+... -.+|++..+. ....-..+.+|...|+++.|.|. ....+++++.|..+..||+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss--~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSS--SNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred hhcceecccCCCCceeEEecCcch-hhhhhhhcCC--ccceEEEEecCccceeccccCCC-CCcceeeccccccceeeec
Confidence 35567788754 2456655544 4589998664 33344556799999999999886 4688999999999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
+... .++..+.........|+|+.. ++. +++.+...-|.+||++.+ ..+...++.+...+
T Consensus 145 rSp~------~p~ys~~~w~s~asqVkwnyk-~p~-vlasshg~~i~vwd~r~g-----s~pl~s~K~~vs~v------- 204 (1081)
T KOG0309|consen 145 RSPH------RPFYSTSSWRSAASQVKWNYK-DPN-VLASSHGNDIFVWDLRKG-----STPLCSLKGHVSSV------- 204 (1081)
T ss_pred cCCC------cceeeeecccccCceeeeccc-Ccc-hhhhccCCceEEEeccCC-----CcceEEecccceee-------
Confidence 8764 566666666677889999862 444 555555667999999975 34455555554333
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW 213 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~ 213 (240)
+.+.|+..... .+.+.+.| ++|+.|+.+....++
T Consensus 205 ---n~~~fnr~~~s----~~~s~~~d-----~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 205 ---NSIDFNRFKYS----EIMSSSND-----GTVKFWDYSKSTTES 238 (1081)
T ss_pred ---ehHHHhhhhhh----hhcccCCC-----Cceeeeccccccccc
Confidence 36666654421 67888888 999999997654444
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=6e-07 Score=74.77 Aligned_cols=159 Identities=14% Similarity=0.190 Sum_probs=114.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC----------CCEEEEEecCC
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF----------GDAVACICSDG 80 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~~~l~s~~~d~ 80 (240)
.-.++.|+|.| +||-|+. ..|.+-|.. +.+.++.+..|...|+.+.|.|... .-+++++...|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~-----s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSR-----SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehh-----hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 35678898877 7777766 578888888 7788999999999999999987521 23577788889
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC--cEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS--LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
.|.+||+... ..+..+..+...+..++|-|.++. .+|++-....++.+|+..++ +..-.......
T Consensus 90 rIil~d~~~~-------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG------~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 90 RIILVDFVLA-------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG------EKFWKYDYSHE 156 (1062)
T ss_pred cEEEEEehhh-------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC------ceeeccccCCc
Confidence 9999999776 566677778889999999885443 35666667789999999884 33333333223
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
... ++.++|.... .+..-+.. |.+.+-+...
T Consensus 157 iLs----------~f~~DPfd~r----h~~~l~s~-----g~vl~~~~l~ 187 (1062)
T KOG1912|consen 157 ILS----------CFRVDPFDSR----HFCVLGSK-----GFVLSCKDLG 187 (1062)
T ss_pred cee----------eeeeCCCCcc----eEEEEccC-----ceEEEEeccC
Confidence 333 6777776642 45555555 7887777644
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=6.6e-08 Score=86.72 Aligned_cols=156 Identities=16% Similarity=0.236 Sum_probs=120.9
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
..|.++.=+|...+-+||+.||.|++|.-... +.+..++ +. ..|+.+.|+.. |+.+..+..||.+.+|..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~-----~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG-----QQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCC-----CeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeeccc
Confidence 46777777888899999999999999988632 3344443 43 77899999998 999999999999999999
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe---CCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY---SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR 164 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 164 (240)
.. ++....+.|......+.|-- ..+++++ .++.+.+||...+.. ..++. ..|...++
T Consensus 2281 ~p--------k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT--- 2340 (2439)
T KOG1064|consen 2281 SP--------KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHDGGAT--- 2340 (2439)
T ss_pred CC--------cceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcc---cceee--eecCCCce---
Confidence 73 77888888888888888843 4456654 567899999875422 23333 55655555
Q ss_pred cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
++++-|... +|++|+.+ |.|.+||++..+
T Consensus 2341 -------~l~~~P~~q-----llisggr~-----G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2341 -------VLAYAPKHQ-----LLISGGRK-----GEVCLFDIRQRQ 2369 (2439)
T ss_pred -------EEEEcCcce-----EEEecCCc-----CcEEEeehHHHH
Confidence 899999987 99999999 999999997643
No 279
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.72 E-value=8.2e-06 Score=66.25 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=90.0
Q ss_pred ccEEEEEEcCCCCCCEEEEE----ecCCe----EEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEE
Q 026295 57 GAILKVVWVPPEFGDAVACI----CSDGS----LLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAA 127 (240)
Q Consensus 57 ~~v~~~~~~~~~~~~~l~s~----~~d~~----v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~ 127 (240)
....++.|+.. .+..+.+. +.+|. -++|+..... .+.+.... .....|.+.+++| +...++.|
T Consensus 206 ~dPl~~~Fs~~-~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-----lqrvsvtsipL~s~v~~ca~sp--~E~kLvlG 277 (545)
T PF11768_consen 206 NDPLDVEFSLN-QPYQIHTVEQSISVKGEPSADSCIYECSRNK-----LQRVSVTSIPLPSQVICCARSP--SEDKLVLG 277 (545)
T ss_pred CCcEEEEccCC-CCcEEEEEEEecCCCCCceeEEEEEEeecCc-----eeEEEEEEEecCCcceEEecCc--ccceEEEE
Confidence 33457777754 24444432 23443 2466664321 12222222 3457889999999 88899999
Q ss_pred eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
+.||.|.+||.... .....+. .+.++.++|+|++. ++++|+.. |.+.+||.-
T Consensus 278 C~DgSiiLyD~~~~-------~t~~~ka-----------~~~P~~iaWHp~ga-----i~~V~s~q-----GelQ~FD~A 329 (545)
T PF11768_consen 278 CEDGSIILYDTTRG-------VTLLAKA-----------EFIPTLIAWHPDGA-----IFVVGSEQ-----GELQCFDMA 329 (545)
T ss_pred ecCCeEEEEEcCCC-------eeeeeee-----------cccceEEEEcCCCc-----EEEEEcCC-----ceEEEEEee
Confidence 99999999998752 1111111 11224899999998 89999998 999999985
Q ss_pred cCCCCc---------ceeEeeecCCCCCCceEEEEEecC
Q 026295 208 EAHNRW---------LPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 208 ~~~~~~---------~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
-..... ...-.+..+-.++..+-.++|+|.
T Consensus 330 Lspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 330 LSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred cCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 432221 222333344456777888899854
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=5.2e-08 Score=74.75 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=65.6
Q ss_pred eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCC
Q 026295 52 TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 52 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
+-+|-..+++|.|+|+ +++++++..|..|++-.+... ..+..|- +|+.-|..++.-+ + ..|++++.|
T Consensus 147 ~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~-------f~IesfclGH~eFVS~isl~~--~-~~LlS~sGD 214 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPAT-------FVIESFCLGHKEFVSTISLTD--N-YLLLSGSGD 214 (390)
T ss_pred hhhhhhhhheeeecCC--CCEEEEecCCceEEEEecCcc-------cchhhhccccHhheeeeeecc--C-ceeeecCCC
Confidence 3478889999999999 999999999999998877543 3444443 6999999999976 4 448999999
Q ss_pred CcEEEEEecCccc
Q 026295 131 GHVKVYELLDPLI 143 (240)
Q Consensus 131 g~v~iw~~~~~~~ 143 (240)
++|++||++++..
T Consensus 215 ~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 215 KTLRLWDITSGKL 227 (390)
T ss_pred CcEEEEecccCCc
Confidence 9999999998533
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.70 E-value=2.7e-08 Score=72.38 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=93.1
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-----cCCeEEEEEeeec
Q 026295 16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-----SDGSLLLWEEIVE 90 (240)
Q Consensus 16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~~~ 90 (240)
+.+-.++.++++..||.+.+++.++. .+.......-...-.+.++... ++.+.++. .-+..+.|+++..
T Consensus 96 ~~s~~~t~V~~~~~dg~~~v~s~~~~----~~~~~~i~~~~~~~as~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 96 ACTMTDNRVCIGYADGSLAVFSTDKD----LALMSRIPSIHSGSASRKICRH--GNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cccccCCceEecCCCceEEEEechHH----Hhhhhhcccccccccccceeec--ccEEecCCcceEeeccceeeeccccc
Confidence 33445678999999999999998731 1111111111111223333333 44444432 1234456665432
Q ss_pred cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295 91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 170 (240)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (240)
..+..-......|.+++-+|.+ ...+++|+.||.+-+||.+.. -.+...+..|...+.
T Consensus 170 -------~t~~~~~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~--------- 227 (319)
T KOG4714|consen 170 -------KTLIPSKKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIW--------- 227 (319)
T ss_pred -------ccccccccccccchhhhCCccc-ccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhh---------
Confidence 1111111122348888888843 345788899999999999863 122334456666665
Q ss_pred eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.|.|+|..++ .|.+++.| |.+.-||..+
T Consensus 228 -eV~FHpk~p~----~Lft~sed-----Gslw~wdas~ 255 (319)
T KOG4714|consen 228 -EVHFHPKNPE----HLFTCSED-----GSLWHWDAST 255 (319)
T ss_pred -heeccCCCch----heeEecCC-----CcEEEEcCCC
Confidence 8999999864 79999999 9999999874
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.70 E-value=8.5e-06 Score=64.57 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=107.5
Q ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEEeeeccCCC
Q 026295 17 WNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWEEIVEDAQP 94 (240)
Q Consensus 17 ~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~ 94 (240)
|++ +|.+++..|. |...|.+.... ..+ . -+|.+.|.-..+.-+ ++-++.|..|| .+-|+|...+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-----~~i-q-v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~---- 392 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDG-----YSI-Q-VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGG---- 392 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCC-----eeE-E-cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCc----
Confidence 444 6888988887 67777766521 122 2 246777888888777 67788899999 8999999764
Q ss_pred cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEE
Q 026295 95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS 174 (240)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ 174 (240)
.+..+...-+.|.++..+| +|++++++.....+.++|+.++ ..+++. +..-.-|. ...
T Consensus 393 ----e~kr~e~~lg~I~av~vs~--dGK~~vvaNdr~el~vididng----nv~~id--kS~~~lIt----------df~ 450 (668)
T COG4946 393 ----EVKRIEKDLGNIEAVKVSP--DGKKVVVANDRFELWVIDIDNG----NVRLID--KSEYGLIT----------DFD 450 (668)
T ss_pred ----eEEEeeCCccceEEEEEcC--CCcEEEEEcCceEEEEEEecCC----CeeEec--ccccceeE----------EEE
Confidence 4556666668899999999 9999999999889999998872 112221 12222333 889
Q ss_pred EeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 175 WNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 175 ~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|+|++. .+|-+.-+ +-....|++||+.+++
T Consensus 451 ~~~nsr-----~iAYafP~-gy~tq~Iklydm~~~K 480 (668)
T COG4946 451 WHPNSR-----WIAYAFPE-GYYTQSIKLYDMDGGK 480 (668)
T ss_pred EcCCce-----eEEEecCc-ceeeeeEEEEecCCCe
Confidence 999987 78877654 1111579999988754
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.7e-07 Score=76.20 Aligned_cols=125 Identities=14% Similarity=0.233 Sum_probs=92.6
Q ss_pred CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295 1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
|.+++.+|.+.|.-+.|+.+.+.|-|...+|.|.||-+.+. .|-.-..-......|.+++|+.+ |..+...-.||
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg---sW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvYeDG 137 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG---SWCEEMINNRNKSVVVSMSWNLD--GTKICIVYEDG 137 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc---cHHHHHhhCcCccEEEEEEEcCC--CcEEEEEEccC
Confidence 56789999999999999999999999999999999998743 22111111234567899999999 99999999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
.|.+=.+... .+..-.........+.|++ +...++.+-.+|.+++||.+.
T Consensus 138 avIVGsvdGN--------RIwgKeLkg~~l~hv~ws~--D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 138 AVIVGSVDGN--------RIWGKELKGQLLAHVLWSE--DLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred CEEEEeeccc--------eecchhcchheccceeecc--cHHHHHhhhcCCcEEEecccc
Confidence 9988776543 1111111122344688988 888777788889999998764
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=1.1e-05 Score=65.40 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=64.7
Q ss_pred ceEEEEECCCCCE-EEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC--eEE
Q 026295 11 GTTSSSWNYCGQR-LATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG--SLL 83 (240)
Q Consensus 11 ~v~~~~~s~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~--~v~ 83 (240)
.+..-+|+|+|+. ++..+.+ ..|.++|+... ..+.+.. ..+......|+|+ |..++ +.+.++ .|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~---~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIAS---SQGMLVVSDVSKD--GSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEec---CCCcEEeeEECCC--CCEEEEEEccCCCcEEE
Confidence 5667899999985 6654443 45777887632 2233322 3455667889999 87655 444444 566
Q ss_pred EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecC
Q 026295 84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLD 140 (240)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~ 140 (240)
++++..+ . ...+...........|+| +|+.|+..+. .+ .|.+.|+.+
T Consensus 261 ~~dl~~g-------~-~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 261 LYDTNTK-------T-LTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEECCCC-------c-EEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 6666443 2 222322222234567999 9987666653 34 455555543
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.61 E-value=2.5e-06 Score=69.18 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=61.2
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
.+...|.|++++|+...|+.|..||+|.+||.... +..+....-....++|+|+ |.++++|+..|.+.+||
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-------~t~~~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-------VTLLAKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-------eeeeeeecccceEEEEcCC--CcEEEEEcCCceEEEEE
Confidence 45678999999999999999999999999998732 2222233455789999999 99999999999999999
Q ss_pred eee
Q 026295 87 EIV 89 (240)
Q Consensus 87 ~~~ 89 (240)
..-
T Consensus 328 ~AL 330 (545)
T PF11768_consen 328 MAL 330 (545)
T ss_pred eec
Confidence 753
No 286
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3.6e-07 Score=72.04 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=102.5
Q ss_pred EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEE
Q 026295 48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVA 126 (240)
Q Consensus 48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~ 126 (240)
+...|..|.+.|..|.|+.. |..+++++.|..|.+||-... .+...| .+|...|....|-|..+.+-+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~--Gd~l~SgSDD~~vv~WdW~~~-------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQR--GDVLASGSDDLQVVVWDWVSG-------SPKLSFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred hhhcccCCCCccceeeeccc--CceeeccCccceEEeehhhcc-------CcccccccccccchhhhhccCCCCCcCcee
Confidence 44567789999999999998 999999999999999998665 444444 47888999999999777788999
Q ss_pred EeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 127 AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 127 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
++.||+|++=.+... ...+....+..|..++. .++..|.... .|.+++.| +.+.=+|+
T Consensus 205 ~s~dgqvr~s~i~~t---~~~e~t~rl~~h~g~vh----------klav~p~sp~----~f~S~geD-----~~v~~~Dl 262 (559)
T KOG1334|consen 205 SSRDGQVRVSEILET---GYVENTKRLAPHEGPVH----------KLAVEPDSPK----PFLSCGED-----AVVFHIDL 262 (559)
T ss_pred ccccCceeeeeeccc---cceecceecccccCccc----------eeeecCCCCC----cccccccc-----cceeeeee
Confidence 999999998776542 11222344556666666 6777777643 68889988 99999998
Q ss_pred ecCCC
Q 026295 207 DEAHN 211 (240)
Q Consensus 207 ~~~~~ 211 (240)
+....
T Consensus 263 r~~~p 267 (559)
T KOG1334|consen 263 RQDVP 267 (559)
T ss_pred ccCCc
Confidence 77543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.55 E-value=2.2e-07 Score=67.71 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=61.8
Q ss_pred cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.+|.+++-+|.. ..+++|+.||.+.+||.+.. -.+...++.|+.+++.+-|.|. .+..|++++.||.+..||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----~~p~S~l~ahk~~i~eV~FHpk-~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----AMPVSLLKAHKAEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccc----cchHHHHHHhhhhhhheeccCC-CchheeEecCCCcEEEEcCC
Confidence 358899989955 57888899999999999843 2345667789999999999886 47788999999999999976
Q ss_pred e
Q 026295 89 V 89 (240)
Q Consensus 89 ~ 89 (240)
.
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
No 288
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.55 E-value=8.2e-07 Score=75.15 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=103.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---------CCeEEEEEeee
Q 026295 19 YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---------DGSLLLWEEIV 89 (240)
Q Consensus 19 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------d~~v~iwd~~~ 89 (240)
.++++|.+|...|+|.+-|.. +.+.++++..|++.|.++.. . |++|++++. |..|++||+++
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~-----s~~~iht~~aHs~siSDfDv--~--GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPN-----SFETIHTFDAHSGSISDFDV--Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred ecCcEEEeecccceEEeecCC-----cCceeeeeeccccceeeeec--c--CCeEEEeecccccccccccchhhhhhhhh
Confidence 467899999999999999998 78899999999999988775 3 788888765 55789999987
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI 169 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 169 (240)
- +.+..+.-+..+ .-+.|+|.- ...+++++..|+..+-|..+-.+.... +.-+......+.
T Consensus 256 m-------ral~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~--~~~v~p~~s~i~-------- 316 (1118)
T KOG1275|consen 256 M-------RALSPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAG--VKMVNPNGSGIS-------- 316 (1118)
T ss_pred h-------hccCCcccccCc-hhhhhcccc-cceEEEEecccceeeccccccCCCccc--eeEEccCCCcce--------
Confidence 5 434333332222 557788842 235888888999999884431111101 111111111122
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE 205 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~ 205 (240)
.+.+++++. .+|.|..+ |.|.+|.
T Consensus 317 --~fDiSsn~~-----alafgd~~-----g~v~~wa 340 (1118)
T KOG1275|consen 317 --AFDISSNGD-----ALAFGDHE-----GHVNLWA 340 (1118)
T ss_pred --eEEecCCCc-----eEEEeccc-----CcEeeec
Confidence 778888887 89999999 9999998
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.54 E-value=2.9e-05 Score=69.97 Aligned_cols=166 Identities=8% Similarity=0.012 Sum_probs=100.3
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---------------cCccEEEEEEcCCCCCC-EEEE
Q 026295 13 TSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---------------HAGAILKVVWVPPEFGD-AVAC 75 (240)
Q Consensus 13 ~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~-~l~s 75 (240)
..++|+| ++.++++...++.|++|+.... .. ..+.+ .-.....|+++|+ +. ++++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-----~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVA 757 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDG-----VT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIA 757 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCC-----eE-EEEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEE
Confidence 5789999 5666777778899999998632 11 11111 0123457999998 87 4455
Q ss_pred EecCCeEEEEEeeeccCCCcccEEEE-----------Eeee--------ccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 76 ICSDGSLLLWEEIVEDAQPLQWKLCK-----------SFES--------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 76 ~~~d~~v~iwd~~~~~~~~~~~~~~~-----------~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
-..++.|++||+..+.. ..+. .+-. .-.....+++++ +|..+++-+.++.|++|
T Consensus 758 Ds~n~~Irv~D~~tg~~-----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrvi 830 (1057)
T PLN02919 758 DSESSSIRALDLKTGGS-----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKL 830 (1057)
T ss_pred ECCCCeEEEEECCCCcE-----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEE
Confidence 55678999999865411 1110 0000 011235788988 88888888899999999
Q ss_pred EecCcccccceeEEeeeecccceee----ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 137 ELLDPLILKNWQLQAEFQNAIDSVT----MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
|..+ .... .+......-. ...........+++++++. ++++-..+ +.|++||+.+..
T Consensus 831 D~~t------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-----lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 831 DPAT------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-----LFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred ECCC------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-----EEEEECCC-----CEEEEEECCCCc
Confidence 9875 2222 1111100000 0001111234788999886 66666666 999999997754
No 290
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.48 E-value=2.3e-05 Score=69.42 Aligned_cols=157 Identities=18% Similarity=0.344 Sum_probs=103.5
Q ss_pred cccceEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---
Q 026295 8 LDKGTTSSSWNYCGQRLATGST---D---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--- 78 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~---d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--- 78 (240)
+++.-..++|-.||.++|+.+. . ..+|||+-++ .+..+-..-.+--..++|.|. |+++|+.-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG------~L~stSE~v~gLe~~l~WrPs--G~lIA~~q~~~~ 279 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG------ELQSTSEPVDGLEGALSWRPS--GNLIASSQRLPD 279 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc------eEEeccccCCCccCCccCCCC--CCEEEEEEEcCC
Confidence 5556678999999999999875 2 5789998763 222222222333457899999 999988754
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEee----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFE----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ 154 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 154 (240)
...|.+|.-.. ..-..|. .....|..+.|++ ++..||....|. |.+|-... +.|-+.+++.
T Consensus 280 ~~~VvFfErNG--------LrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLAv~~~~~-vqLWt~~N----YHWYLKqei~ 344 (928)
T PF04762_consen 280 RHDVVFFERNG--------LRHGEFTLRFDPEEEKVIELAWNS--DSEILAVWLEDR-VQLWTRSN----YHWYLKQEIR 344 (928)
T ss_pred CcEEEEEecCC--------cEeeeEecCCCCCCceeeEEEECC--CCCEEEEEecCC-ceEEEeeC----CEEEEEEEEE
Confidence 23455665432 2333332 3456789999988 999998887665 99998876 4577777765
Q ss_pred cccc-eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 155 NAID-SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 155 ~~~~-~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
-... .+. .+.|+|.... .|.+.... +.+..+++
T Consensus 345 ~~~~~~~~----------~~~Wdpe~p~----~L~v~t~~-----g~~~~~~~ 378 (928)
T PF04762_consen 345 FSSSESVN----------FVKWDPEKPL----RLHVLTSN-----GQYEIYDF 378 (928)
T ss_pred ccCCCCCC----------ceEECCCCCC----EEEEEecC-----CcEEEEEE
Confidence 3321 122 5889997642 56666655 56655554
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=9.8e-06 Score=68.92 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=111.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+..++.|+-...+-.+|+. +.+..+....-.+.|.-+.. + ++++.+|...|+|.+-|.++- +.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~-----~~~e~r~~~v~a~~v~imR~--N--nr~lf~G~t~G~V~LrD~~s~-------~~i 210 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLN-----TEKETRTTNVSASGVTIMRY--N--NRNLFCGDTRGTVFLRDPNSF-------ETI 210 (1118)
T ss_pred Ccceeecchhhheeeeecc-----cceeeeeeeccCCceEEEEe--c--CcEEEeecccceEEeecCCcC-------cee
Confidence 3456666666667777887 44555444433445766665 3 678899999999999999776 899
Q ss_pred EEeeeccccEEeEEEeecCCCcEEEEEeC---------CCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295 101 KSFESTSTQVLDVQFGVSSTSLKLVAAYS---------DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA 171 (240)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (240)
.++..|++.+..+.. .|+.|++|+. |..|+|||+|. ...+..+..+..+ .
T Consensus 211 ht~~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRm------mral~PI~~~~~P-----------~ 269 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRM------MRALSPIQFPYGP-----------Q 269 (1118)
T ss_pred eeeeccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhh------hhccCCcccccCc-----------h
Confidence 999999999987765 6778888874 56689999987 3333333222221 1
Q ss_pred eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
-+.|+|.-.. .+++.+.. |...+-|..+-.....-...+. ..++.+..+++|+++.
T Consensus 270 flrf~Psl~t----~~~V~S~s-----Gq~q~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 270 FLRFHPSLTT----RLAVTSQS-----GQFQFVDTATLSNPPAGVKMVN---PNGSGISAFDISSNGD 325 (1118)
T ss_pred hhhhcccccc----eEEEEecc-----cceeeccccccCCCccceeEEc---cCCCcceeEEecCCCc
Confidence 4668887753 78888877 9999988432221111111111 2334588888888763
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=4.9e-05 Score=60.41 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=91.8
Q ss_pred ccccceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDG-TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
+|.+.|.-..+.-+++-++.|..|| .+-|||.. +.+ ...+...-+.|.+++.+++ |+.++.+.....+.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-----~~e-~kr~e~~lg~I~av~vs~d--GK~~vvaNdr~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-----GGE-VKRIEKDLGNIEAVKVSPD--GKKVVVANDRFELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecC-----Cce-EEEeeCCccceEEEEEcCC--CcEEEEEcCceEEEEE
Confidence 4667788888888888999999999 89999998 333 3444555688999999999 9999998877788888
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC----cEEEEEecC
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG----HVKVYELLD 140 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~~~~ 140 (240)
|+.++ .....-+....-|+.+.|+| +++++|-+--+| .|+++|+..
T Consensus 429 didng-------nv~~idkS~~~lItdf~~~~--nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 429 DIDNG-------NVRLIDKSEYGLITDFDWHP--NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EecCC-------CeeEecccccceeEEEEEcC--CceeEEEecCcceeeeeEEEEecCC
Confidence 88876 33333334557799999999 999999876554 588999875
No 293
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.9e-06 Score=63.62 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=67.1
Q ss_pred hcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 5 VATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+..|...|..++|||..+ ++..++.+..|+|.|+. +...+..+..+ ..+++.+|..+. .+++..|...|.|.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-----t~~~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-----TSCVVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGMVL 261 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecc-----cceeeeheecc-CCceeeeeccCC-cceeEEeccCceEE
Confidence 345667899999999776 88999999999999998 55667777766 789999998773 67888999999999
Q ss_pred EEEeeecc
Q 026295 84 LWEEIVED 91 (240)
Q Consensus 84 iwd~~~~~ 91 (240)
+||++..+
T Consensus 262 vyD~R~~~ 269 (463)
T KOG1645|consen 262 VYDMRQPE 269 (463)
T ss_pred EEEccCCC
Confidence 99998764
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=3.2e-05 Score=64.91 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=91.3
Q ss_pred chhcccccceEEEEECCCC------------CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC-
Q 026295 3 KAVATLDKGTTSSSWNYCG------------QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF- 69 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~------------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 69 (240)
+.+..|...|+.++|.|.. -+||++...|.|-+||.. ....+..+..|..++.+++|-+.+.
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-----~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-----LASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-----hhhhhhhhcCCCcchhheeeeeccCc
Confidence 3466788999999998731 268888888999999998 5556677778889999999977532
Q ss_pred C-CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 70 G-DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 70 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
. ..|+.-.....+.+|+..++ ..+-..........++.+.|. +.+.+..-+..|.|.+.+..
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG-------~k~Wk~~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTG-------EKFWKYDYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred chheeEEecCCcEEEEEEccCC-------ceeeccccCCcceeeeeeCCC-CcceEEEEccCceEEEEecc
Confidence 2 46666666789999998877 555555554456677888886 44456666667877777654
No 295
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.37 E-value=4.6e-05 Score=60.87 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=111.6
Q ss_pred cceEEEEECCCCCEEEEEeCCCc---------------EEEEeCCCCCCCcEEEEeEeeecCcc--EE-EEEEcCCCCCC
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGT---------------LSIFDSPDPSSSSFTCNLKTKVHAGA--IL-KVVWVPPEFGD 71 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~---------------i~iw~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~ 71 (240)
..|..+.|+|.+++|.+-+..+. +.+||+. .+.++..+.....+ .+ -++|+-+ ..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-----sg~iv~sf~~~~q~~~~Wp~~k~s~~--D~ 144 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-----SGMIVFSFNGISQPYLGWPVLKFSID--DK 144 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-----CceeEeeccccCCcccccceeeeeec--ch
Confidence 35788999999999999876554 8899998 66788888765555 44 6788777 56
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEE-----EeCCCcEEEEEecCcccccc
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVA-----AYSDGHVKVYELLDPLILKN 146 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iw~~~~~~~~~~ 146 (240)
+++-. ....+.++++...-. -.+...++ ...|....|+|..++..|+. .+.++++++|.+.....
T Consensus 145 y~ARv-v~~sl~i~e~t~n~~----~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~--- 214 (561)
T COG5354 145 YVARV-VGSSLYIHEITDNIE----EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV--- 214 (561)
T ss_pred hhhhh-ccCeEEEEecCCccc----cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe---
Confidence 55543 234688999732210 01222222 36788899999545554444 34677888888764211
Q ss_pred eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC----CCC--CeEEEEEeecCCCCcceeEeee
Q 026295 147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT----PQL--NSSKVWEFDEAHNRWLPVAELA 220 (240)
Q Consensus 147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~----~~~--~~i~iw~~~~~~~~~~~~~~~~ 220 (240)
.....+-.- ..| .+.|++.+. +|++--..+. ..+ ..++|+++...... + ++
T Consensus 215 -l~tk~lfk~---------~~~---qLkW~~~g~-----~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~---V-~~- 271 (561)
T COG5354 215 -LVTKNLFKV---------SGV---QLKWQVLGK-----YLLVLVMTHTKSNKSYFGESNLYLLRITERSIP---V-EK- 271 (561)
T ss_pred -eeeeeeEee---------ccc---EEEEecCCc-----eEEEEEEEeeecccceeccceEEEEeecccccc---e-ec-
Confidence 111111111 122 677988887 4433221100 111 45677776633222 1 11
Q ss_pred cCCCCCCceEEEEEecCCCC
Q 026295 221 LPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 221 ~~~~h~~~v~~v~~sp~~~~ 240 (240)
+-.++|.+++|.|.+.|
T Consensus 272 ---~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 272 ---DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred ---cccccceeeeecccCCc
Confidence 23349999999998754
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=2.9e-06 Score=68.46 Aligned_cols=160 Identities=11% Similarity=0.093 Sum_probs=97.3
Q ss_pred EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295 49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 128 (240)
+..+.+|...|..+.--.+ .+-+++++.|.+|++|.++....+-..-.+..++..|+.+|..+.|-. +.+++++
T Consensus 728 L~nf~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~--~lr~i~S-- 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA--DLRSIAS-- 801 (1034)
T ss_pred eecccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee--ccceeee--
Confidence 3456688888877765455 667899999999999999754322222246777888999999999977 7776664
Q ss_pred CCCcEEEEEecCcccccceeEEeeee--cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 129 SDGHVKVYELLDPLILKNWQLQAEFQ--NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 129 ~dg~v~iw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
.||-|++||.--. .+...+. ....... .+.--|+-.. ..+++.++.. .+|+++|.
T Consensus 802 cD~giHlWDPFig------r~Laq~~dapk~~a~~----------~ikcl~nv~~--~iliAgcsae-----STVKl~Da 858 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIG------RLLAQMEDAPKEGAGG----------NIKCLENVDR--HILIAGCSAE-----STVKLFDA 858 (1034)
T ss_pred ccCcceeeccccc------chhHhhhcCcccCCCc----------eeEecccCcc--hheeeeccch-----hhheeeec
Confidence 4788999997542 2221111 1111111 2222232110 1133444555 89999998
Q ss_pred ecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
+... |+..-.+....+-...+++++-.|.|+
T Consensus 859 Rsce--~~~E~kVcna~~Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 859 RSCE--WTCELKVCNAPGPNALTRAIAVADKGN 889 (1034)
T ss_pred cccc--ceeeEEeccCCCCchheeEEEeccCcc
Confidence 7643 544333332223333688888887764
No 297
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=4.1e-07 Score=76.94 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=88.9
Q ss_pred hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-C-Ce
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-D-GS 81 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d-~~ 81 (240)
.+..|+...+|++|+...++|+.|+-.|.|++|++. ++........|..+|+.+.=+.+ |..+++.+. . ..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-----sG~~e~s~ncH~SavT~vePs~d--gs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-----SGSMEESVNCHQSAVTLVEPSVD--GSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEcc-----CccccccccccccccccccccCC--cceeeeeccccCch
Confidence 467788899999999999999999999999999998 66677788899999999886666 776655433 2 25
Q ss_pred EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
..+|+...- +.+..+|.+ -.++.|+. ..++-+.|+....+.+||+++.
T Consensus 1169 saLW~~~s~------~~~~Hsf~e----d~~vkFsn--~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1169 SALWDASST------GGPRHSFDE----DKAVKFSN--SLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred HHHhccccc------cCccccccc----cceeehhh--hHHHHHhcccccceEEEecccC
Confidence 679998542 144555543 46788987 4444445555556899999984
No 298
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=9.4e-05 Score=62.76 Aligned_cols=184 Identities=9% Similarity=0.105 Sum_probs=114.1
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc-EEEEEEcCCCCCCEEEEEecCC-----eEEEEEeee
Q 026295 16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-ILKVVWVPPEFGDAVACICSDG-----SLLLWEEIV 89 (240)
Q Consensus 16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~ 89 (240)
+|++.+..++.|+.+|.|.+.+-. .+.+..++.+... |..+.. -+ ...+|++.+.|+ .+++|++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~~-~~-~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLYI-LN-KQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhhc-cc-CceEEEEEeecCCCCceEEEEecccc
Confidence 567889999999999999888764 4556778877777 444433 33 136777777665 489999986
Q ss_pred ccCCCcccEEE---EEe--ee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295 90 EDAQPLQWKLC---KSF--ES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 90 ~~~~~~~~~~~---~~~--~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
.++... -.++ +.+ +. ...++.+++.+. +-..+|+|-.+|.|..+.=.-..+ .+....-......+|+
T Consensus 102 ~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RD--rgsr~~~~~~~~~pIT- 175 (933)
T KOG2114|consen 102 VDKNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRD--RGSRQDYSHRGKEPIT- 175 (933)
T ss_pred cCCCCC-cceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhc--cccceeeeccCCCCce-
Confidence 543321 1233 222 22 357788899987 778899999999998875211000 0111111122334444
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.+.+..++.. .+.++.. ..|.+|.+.... . ... .+..|+..++|.+|++.-
T Consensus 176 ---------gL~~~~d~~s----~lFv~Tt------~~V~~y~l~gr~-p--~~~---~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 176 ---------GLALRSDGKS----VLFVATT------EQVMLYSLSGRT-P--SLK---VLDNNGISLNCSSFSDGT 226 (933)
T ss_pred ---------eeEEecCCce----eEEEEec------ceeEEEEecCCC-c--cee---eeccCCccceeeecCCCC
Confidence 7888777751 2333333 789999998433 1 112 233577789999888753
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00055 Score=51.12 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=98.3
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC---ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295 15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA---GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED 91 (240)
Q Consensus 15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 91 (240)
++.+.+|++||.- .|..|.|-..+.+ -..++.+.+..+ -.=.-++|+|+ +.+||.+...|+|+++|+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd---f~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~- 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDD---FSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGS- 75 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCC---chheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccc-
Confidence 5667899888876 5678888776543 112222222222 23467999999 999999999999999998752
Q ss_pred CCCcccEEEEEeee-------ccccEEeEEEeecC-C---CcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 92 AQPLQWKLCKSFES-------TSTQVLDVQFGVSS-T---SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 92 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~---~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.+..+.. ....|..+.|.+.. + ...|++-+.+|.++=|-+... ....++....+.-...
T Consensus 76 -------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g-t~q~y~e~hsfsf~~~-- 145 (282)
T PF15492_consen 76 -------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG-TNQGYQENHSFSFSSH-- 145 (282)
T ss_pred -------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc-cCCcceeeEEEEeccc--
Confidence 2333322 23566677775421 1 224777778888887776321 1112333333322110
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCC------CeEEEEEeec
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQL------NSSKVWEFDE 208 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~------~~i~iw~~~~ 208 (240)
..-.++++.|+|... +|++|+....... .-+..|.+-+
T Consensus 146 -----yp~Gi~~~vy~p~h~-----LLlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 146 -----YPHGINSAVYHPKHR-----LLLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred -----CCCceeEEEEcCCCC-----EEEEeccCCCCCccccccccCceEEEEcC
Confidence 112334899999976 7777776432211 2466676643
No 300
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.30 E-value=0.00087 Score=52.87 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=50.5
Q ss_pred ECCCCCEEEEEeC----------CCcEEEEeCCCCCCCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEEe-c
Q 026295 17 WNYCGQRLATGST----------DGTLSIFDSPDPSSSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACIC-S 78 (240)
Q Consensus 17 ~s~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~-~ 78 (240)
++|+|+.|.++.. +..|.+||.. +++.+..+..- ......+.++|+ |++++... .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-----t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~ 125 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-----THLPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFS 125 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc-----cCcEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCC
Confidence 8999998877765 6899999998 66777666521 122347889999 99888766 3
Q ss_pred -CCeEEEEEeeec
Q 026295 79 -DGSLLLWEEIVE 90 (240)
Q Consensus 79 -d~~v~iwd~~~~ 90 (240)
+..|.+.|+..+
T Consensus 126 p~~~V~VvD~~~~ 138 (352)
T TIGR02658 126 PSPAVGVVDLEGK 138 (352)
T ss_pred CCCEEEEEECCCC
Confidence 678999998765
No 301
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00031 Score=57.17 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=63.2
Q ss_pred ccccceEEEEECCCCCEEEEE-eCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC--
Q 026295 7 TLDKGTTSSSWNYCGQRLATG-STD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG-- 80 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~-~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~-- 80 (240)
...+.....+|+|||+.|+.. +.+ ..|.++++... ..+. +..+........|+|+ |+.|+..+ ..+
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~---LT~~~~~d~~p~~SPD--G~~I~F~Sdr~g~~ 301 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQ---ITNYPGIDVNGNFVED--DKRIVFVSDRLGYP 301 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEE---cccCCCccCccEECCC--CCEEEEEECCCCCc
Confidence 344556678899999876654 334 45666676532 2222 2222332345689999 88666554 344
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---------CcEEEEEecC
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---------GHVKVYELLD 140 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~ 140 (240)
.|.+.|+..+ ...+..... . ....|+| +|.+++..... ..|.+.|+.+
T Consensus 302 ~Iy~~dl~~g-------~~~rlt~~g-~--~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 302 NIFMKKLNSG-------SVEQVVFHG-K--NNSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred eEEEEECCCC-------CeEeCccCC-C--cCceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 4555555443 221111111 1 1248999 99988776643 2466666654
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.25 E-value=7.2e-05 Score=65.68 Aligned_cols=176 Identities=15% Similarity=0.242 Sum_probs=101.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCC----CCC--------------CCcEEEEeEeeecC-------------
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSP----DPS--------------SSSFTCNLKTKVHA------------- 56 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~----~~~--------------~~~~~~~~~~~~h~------------- 56 (240)
.++.|.+++||||++.++..+.++++.+-... ... .+=++.-..|.+..
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 45689999999999999999888887654321 000 00001111122111
Q ss_pred --------ccEEEEEEcCCCCCCEEEEEe----cC-CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE
Q 026295 57 --------GAILKVVWVPPEFGDAVACIC----SD-GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK 123 (240)
Q Consensus 57 --------~~v~~~~~~~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 123 (240)
..=.+|.|--+ |++|++.. .+ ..|++||-.. ..-..-.....--.+++|-| .|..
T Consensus 188 ~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~~RkirV~drEg--------~Lns~se~~~~l~~~LsWkP--sgs~ 255 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRGD--GEYFAVSFVESETGTRKIRVYDREG--------ALNSTSEPVEGLQHSLSWKP--SGSL 255 (1265)
T ss_pred cccchhhccCCceEEEccC--CcEEEEEEEeccCCceeEEEecccc--------hhhcccCcccccccceeecC--CCCe
Confidence 11235899888 99998832 23 7899999762 11111111223335789988 8887
Q ss_pred EEEEe---CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEE---EecCCCCC
Q 026295 124 LVAAY---SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL---GFNSDTPQ 197 (240)
Q Consensus 124 l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~---~~~dd~~~ 197 (240)
+++-. +|+.|.+|..+. +..++....+......+ ..++|+.++. +||+ ....
T Consensus 256 iA~iq~~~sd~~IvffErNG---L~hg~f~l~~p~de~~v----------e~L~Wns~sd-----iLAv~~~~~e~---- 313 (1265)
T KOG1920|consen 256 IAAIQCKTSDSDIVFFERNG---LRHGEFVLPFPLDEKEV----------EELAWNSNSD-----ILAVVTSNLEN---- 313 (1265)
T ss_pred EeeeeecCCCCcEEEEecCC---ccccccccCCcccccch----------heeeecCCCC-----ceeeeeccccc----
Confidence 77653 566788887653 11122111111111112 3899999987 7877 4443
Q ss_pred CCeEEEEEeecCCCCcceeEeee
Q 026295 198 LNSSKVWEFDEAHNRWLPVAELA 220 (240)
Q Consensus 198 ~~~i~iw~~~~~~~~~~~~~~~~ 220 (240)
..|++|...+.. |.+..++.
T Consensus 314 -~~v~lwt~~Nyh--WYLKq~l~ 333 (1265)
T KOG1920|consen 314 -SLVQLWTTGNYH--WYLKQELQ 333 (1265)
T ss_pred -ceEEEEEecCeE--EEEEEEEe
Confidence 569999876643 66655554
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.24 E-value=0.001 Score=50.22 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=100.2
Q ss_pred eEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--e-cCccEEEEEEcCCCCCCEEEEEecC--------
Q 026295 12 TTSSSWN-YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--V-HAGAILKVVWVPPEFGDAVACICSD-------- 79 (240)
Q Consensus 12 v~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~~l~s~~~d-------- 79 (240)
...+++. +++ .|+.+... .+.++|.... ..+.+.... . .....+++++.++ |.+.++....
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSG-GIAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEEEECTTS-EEEEEETT-CEEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGS
T ss_pred CceEEEEccCC-EEEEEEcC-ceEEEecCCC---cEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccc
Confidence 5677777 554 55555554 4556687633 334444442 1 3456889999999 9877765543
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCccc-ccceeEEeeeeccc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLI-LKNWQLQAEFQNAI 157 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~ 157 (240)
+.|..++.. + +..... ..-.....|+|+| +++.|. +-+..+.|..+++..... .........+....
T Consensus 115 g~v~~~~~~-~-------~~~~~~-~~~~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 115 GSVYRIDPD-G-------KVTVVA-DGLGFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP 183 (246)
T ss_dssp EEEEEEETT-S-------EEEEEE-EEESSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred cceEEECCC-C-------eEEEEe-cCcccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCC
Confidence 334444443 1 322222 2335568999999 887664 556778888888864321 11111122222111
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe-c
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA-L 236 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p 236 (240)
.... .++++.++. +.++.... +.|.+++.+ ++ ....+..... .+++++|. |
T Consensus 184 g~pD----------G~~vD~~G~-----l~va~~~~-----~~I~~~~p~-G~----~~~~i~~p~~---~~t~~~fgg~ 235 (246)
T PF08450_consen 184 GYPD----------GLAVDSDGN-----LWVADWGG-----GRIVVFDPD-GK----LLREIELPVP---RPTNCAFGGP 235 (246)
T ss_dssp CEEE----------EEEEBTTS------EEEEEETT-----TEEEEEETT-SC----EEEEEE-SSS---SEEEEEEEST
T ss_pred cCCC----------cceEcCCCC-----EEEEEcCC-----CEEEEECCC-cc----EEEEEcCCCC---CEEEEEEECC
Confidence 1122 688888886 55555555 899999876 32 2333333322 78999994 4
Q ss_pred C
Q 026295 237 N 237 (240)
Q Consensus 237 ~ 237 (240)
+
T Consensus 236 ~ 236 (246)
T PF08450_consen 236 D 236 (246)
T ss_dssp T
T ss_pred C
Confidence 4
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-05 Score=62.43 Aligned_cols=86 Identities=13% Similarity=0.202 Sum_probs=68.3
Q ss_pred EEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295 46 FTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL 124 (240)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 124 (240)
.+.+..+.+|...|.+++|+|. .+ ++..++.+..|+|.|+++. ..+..+..+ ..+++++|+-+ +..++
T Consensus 183 fkssq~lp~~g~~IrdlafSp~--~~GLl~~asl~nkiki~dlet~-------~~vssy~a~-~~~wSC~wDld-e~h~I 251 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPF--NEGLLGLASLGNKIKIMDLETS-------CVVSSYIAY-NQIWSCCWDLD-ERHVI 251 (463)
T ss_pred cchhhcccccchhhhhhccCcc--ccceeeeeccCceEEEEecccc-------eeeeheecc-CCceeeeeccC-Cccee
Confidence 3344455577788999999998 55 6778889999999999876 666777666 88999999873 35578
Q ss_pred EEEeCCCcEEEEEecCcc
Q 026295 125 VAAYSDGHVKVYELLDPL 142 (240)
Q Consensus 125 ~~~~~dg~v~iw~~~~~~ 142 (240)
.+|-.+|.|.|||++.++
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 888899999999999763
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=4.9e-07 Score=73.77 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=103.5
Q ss_pred cccccceEEEEECC-CCCEEEEEe----CCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecC
Q 026295 6 ATLDKGTTSSSWNY-CGQRLATGS----TDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 6 ~~h~~~v~~~~~s~-~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
..|....++++|++ |.+.||.|- .|..+.|||+...-. ..+....+.+ ......+++|-.+ .+++.+|...
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-vPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~s 175 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-VPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTS 175 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-CCccccccccccccCccccccccC--cchhhccccc
Confidence 34566788999998 567788773 456799999973200 0011111111 2344568899765 7888888888
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE-ecCcccccceeEEeeeecccc
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE-LLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~~~~~~~~~~~~~~~~~~ 158 (240)
..++++|++.. +.....-.+..+..+..+|- .+.++++ ..||.|.+|| .+..+ .+.+.+.....
T Consensus 176 r~~~ifdlRqs--------~~~~~svnTk~vqG~tVdp~-~~nY~cs-~~dg~iAiwD~~rnie-----npl~~i~~~~N 240 (783)
T KOG1008|consen 176 RSVHIFDLRQS--------LDSVSSVNTKYVQGITVDPF-SPNYFCS-NSDGDIAIWDTYRNIE-----NPLQIILRNEN 240 (783)
T ss_pred chhhhhhhhhh--------hhhhhhhhhhhcccceecCC-CCCceec-cccCceeeccchhhhc-----cHHHHHhhCCC
Confidence 89999999742 22222223456677777763 3444544 4599999999 43321 11111111111
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
+ ..+ ....++|+|.... ++++...|. ++|++|+...
T Consensus 241 ~---~~~---~l~~~aycPtrtg----lla~l~RdS----~tIrlydi~~ 276 (783)
T KOG1008|consen 241 K---KPK---QLFALAYCPTRTG----LLAVLSRDS----ITIRLYDICV 276 (783)
T ss_pred C---ccc---ceeeEEeccCCcc----hhhhhccCc----ceEEEecccc
Confidence 0 000 1128999998864 788888776 8999999854
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.00016 Score=57.95 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=96.8
Q ss_pred EEEECCCCCEEEEEe-----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE--ecCC
Q 026295 14 SSSWNYCGQRLATGS-----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI--CSDG 80 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~-----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~d~ 80 (240)
.+.|.+.|++|..=- ....+.|+++.+. .+.......++|.+.+|.|. ++.|++. -.+-
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------~i~V~~~~~~pVhdf~W~p~--S~~F~vi~g~~pa 298 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------SIPVEKDLKDPVHDFTWEPL--SSRFAVISGYMPA 298 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc------ccceeccccccceeeeeccc--CCceeEEeccccc
Confidence 467888887654421 1134666766532 11112245789999999999 7766654 4677
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.+.++|++. .....+. ...=..+.|+| .+++++.++.| |.+.+||.... ..+...+.+..
T Consensus 299 ~~s~~~lr~--------Nl~~~~P--e~~rNT~~fsp--~~r~il~agF~nl~gni~i~~~~~r-----f~~~~~~~~~n 361 (561)
T COG5354 299 SVSVFDLRG--------NLRFYFP--EQKRNTIFFSP--HERYILFAGFDNLQGNIEIFDPAGR-----FKVAGAFNGLN 361 (561)
T ss_pred ceeeccccc--------ceEEecC--CcccccccccC--cccEEEEecCCccccceEEeccCCc-----eEEEEEeecCC
Confidence 899999976 4333333 34445678999 89998887755 67899998652 44443443332
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC-CCCCeEEEEEeecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT-PQLNSSKVWEFDEA 209 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~-~~~~~i~iw~~~~~ 209 (240)
. .-+.|+|++. ++.++...-- ..+..|.|||+...
T Consensus 362 ~------------s~~~wspd~q-----F~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 362 T------------SYCDWSPDGQ-----FYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred c------------eEeeccCCce-----EEEecCCCcccccCcceEEEEecCc
Confidence 1 1446999987 6666643100 11188999998653
No 307
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.16 E-value=0.00054 Score=44.07 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=69.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 12 TTSSSWNY---CG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 12 v~~~~~s~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
|+++++.. +| +.|++|+.|..||||+-. ..+..+.. ...|..++-... ..|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------e~~~Ei~e-~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------EIVAEITE-TDKVTSLCSLGG---GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------cEEEEEec-ccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence 55666544 44 589999999999999876 46666665 466888877564 66888999999999986
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEee-cCCC-cEEEEEeCCCcEEE
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGV-SSTS-LKLVAAYSDGHVKV 135 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~l~~~~~dg~v~i 135 (240)
.. ..|+ .+.. ..+.++.+.. ..+| ..|++|-.+|.|-+
T Consensus 71 ~~-----RlWR----iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQ-----RLWR----IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cc-----eeee----eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 43 2222 2332 3355555543 1122 25888888998753
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.4e-05 Score=61.63 Aligned_cols=183 Identities=13% Similarity=0.101 Sum_probs=113.1
Q ss_pred hhcccccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC----CEEEEEec
Q 026295 4 AVATLDKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG----DAVACICS 78 (240)
Q Consensus 4 ~~~~h~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~~l~s~~~ 78 (240)
-+..|-..|.+++.+.+|.++.+.+. |..++++|+..- ..+..++- ...-..+.|... .| .+-++.-.
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-----DminmiKL-~~lPg~a~wv~s-kGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-----DMINMIKL-VDLPGFAEWVTS-KGDKISLIAVSLFK 120 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-----chhhhccc-ccCCCceEEecC-CCCeeeeEEeeccc
Confidence 35567778888999999999999777 999999999743 22211211 111123334322 13 23334456
Q ss_pred CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
++.+.++|-..... +....-.-|..+|..+.+.+ .+..+++....|.|.-|....+.+-....+...++ +..
T Consensus 121 sg~i~VvD~~~d~~-----q~~~fkklH~sPV~~i~y~q--a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K-~eT 192 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFC-----QDGYFKKLHFSPVKKIRYNQ--AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK-HET 192 (558)
T ss_pred CCCcEEECCcCCcC-----ccceecccccCceEEEEeec--cccceeeccccceeEeecCCCcccCcccccccccc-ccc
Confidence 78899999765421 22222335889999999988 88888888888999999887321111111111111 111
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
..-.+.+......++.|+|++. .+++-+.| .+|+++++.++..
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~-----qistl~~D-----rkVR~F~~KtGkl 235 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGA-----QISTLNPD-----RKVRGFVFKTGKL 235 (558)
T ss_pred hhhcccccccCccceEEccccC-----cccccCcc-----cEEEEEEeccchh
Confidence 1111112222334899999998 68888877 9999999988753
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.9e-05 Score=61.13 Aligned_cols=201 Identities=14% Similarity=0.047 Sum_probs=123.7
Q ss_pred CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-C
Q 026295 1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-D 79 (240)
Q Consensus 1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d 79 (240)
|..+-..|.+.|+.+... ..+++.+++.||.++.|...... -.+.+..+..|.+.|.+++.+-+ +.++.+.+. |
T Consensus 1 ~yeksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--GvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~D 75 (558)
T KOG0882|consen 1 MYEKSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--GVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPD 75 (558)
T ss_pred CcchhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--ceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcc
Confidence 344556788888776543 45799999999999999876421 23456667788899999999888 999999777 9
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC----cEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS----LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
..++++|+.+- ..+..++.. ..-..+.|... .| ..-++.-.++.+.++|-.... .+....-..
T Consensus 76 hs~KvfDvEn~-------DminmiKL~-~lPg~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~----~q~~~fkkl 142 (558)
T KOG0882|consen 76 HSVKVFDVENF-------DMINMIKLV-DLPGFAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDF----CQDGYFKKL 142 (558)
T ss_pred cceeEEEeecc-------chhhhcccc-cCCCceEEecC-CCCeeeeEEeecccCCCcEEECCcCCc----Cccceeccc
Confidence 99999999764 222222211 11122333321 23 222333467889999976531 122222234
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC------CCCccee--EeeecCCCCCC
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA------HNRWLPV--AELALPEDRSD 227 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~------~~~~~~~--~~~~~~~~h~~ 227 (240)
|..++. .+.++|.+. .+++.... |.|.-|..... ...|.+. ..+......-.
T Consensus 143 H~sPV~----------~i~y~qa~D-----s~vSiD~~-----gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt 202 (558)
T KOG0882|consen 143 HFSPVK----------KIRYNQAGD-----SAVSIDIS-----GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT 202 (558)
T ss_pred ccCceE----------EEEeecccc-----ceeecccc-----ceeEeecCCCcccCccccccccccccchhhccccccc
Confidence 555555 788888887 56666555 89999988741 1112111 11111112333
Q ss_pred ceEEEEEecCCC
Q 026295 228 EVYAVAWALNIG 239 (240)
Q Consensus 228 ~v~~v~~sp~~~ 239 (240)
...++.|+|++.
T Consensus 203 ~pts~Efsp~g~ 214 (558)
T KOG0882|consen 203 EPTSFEFSPDGA 214 (558)
T ss_pred CccceEEccccC
Confidence 678899999873
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.00072 Score=51.76 Aligned_cols=161 Identities=12% Similarity=0.147 Sum_probs=93.0
Q ss_pred EEECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-------CCe-
Q 026295 15 SSWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-------DGS- 81 (240)
Q Consensus 15 ~~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-------d~~- 81 (240)
-.||++|++|.+.-.| |.|-|||... ..+.+..+..|.-.-..+.+.|+ |..|+.+.- .|.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~----~~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR----GYRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC----CcEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCce
Confidence 5799999999987544 7899999983 56778888887777788999999 877776521 122
Q ss_pred ----------EEEEEeeeccCCCcccEEEEE--e--eeccccEEeEEEeecCCCcEEEEEeCCCc-------EEEEEecC
Q 026295 82 ----------LLLWEEIVEDAQPLQWKLCKS--F--ESTSTQVLDVQFGVSSTSLKLVAAYSDGH-------VKVYELLD 140 (240)
Q Consensus 82 ----------v~iwd~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------v~iw~~~~ 140 (240)
+.+-|..++ +.+.. + ..+...++.+++.+ +|..++..-..|. |-+++...
T Consensus 130 kLNl~tM~psL~~ld~~sG-------~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~ 200 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSG-------ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGG 200 (305)
T ss_pred ecChhhcCCceEEEecCCC-------ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCC
Confidence 222222222 33333 3 23667788888877 7764333322221 22222111
Q ss_pred cccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 141 PLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
....+.........+. -.+-+|++++++. ++++.+--- +.+.+||..++.
T Consensus 201 --------~~~~~~~p~~~~~~l~---~Y~gSIa~~~~g~-----~ia~tsPrG----g~~~~~d~~tg~ 250 (305)
T PF07433_consen 201 --------ALRLLPAPEEQWRRLN---GYIGSIAADRDGR-----LIAVTSPRG----GRVAVWDAATGR 250 (305)
T ss_pred --------cceeccCChHHHHhhC---CceEEEEEeCCCC-----EEEEECCCC----CEEEEEECCCCC
Confidence 1111111100000011 1223899999986 555554332 899999987764
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.002 Score=48.56 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=82.5
Q ss_pred cceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295 10 KGTTSSSWNYCGQRLATGSTD--------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG 80 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~ 80 (240)
...+.++++++|++.++.... |.|..++.. . . . ..+...-...+.|+|+|+ ++.|+ +-+..+
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~--~-~~~~~~~~~pNGi~~s~d--g~~lyv~ds~~~ 156 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---K--V-TVVADGLGFPNGIAFSPD--GKTLYVADSFNG 156 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---E--E-EEEEEEESSEEEEEEETT--SSEEEEEETTTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---e--E-EEEecCcccccceEECCc--chheeecccccc
Confidence 367889999999988776644 345555554 1 2 1 222222455789999999 88665 555677
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
.|..+++..........+....+.........+++.. +|++.++....+.|.+++.. ++++..+......+
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~-------G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGGGRIVVFDPD-------GKLLREIELPVPRP 227 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETTTEEEEEETT-------SCEEEEEE-SSSSE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCCCEEEEECCC-------ccEEEEEcCCCCCE
Confidence 8888888643210000012222222223477899987 99988877788999999876 35555555443333
Q ss_pred eccccccceeeeEEEe
Q 026295 161 TMFRKASCISASISWN 176 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~ 176 (240)
. +++|-
T Consensus 228 t----------~~~fg 233 (246)
T PF08450_consen 228 T----------NCAFG 233 (246)
T ss_dssp E----------EEEEE
T ss_pred E----------EEEEE
Confidence 3 77883
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.00049 Score=60.74 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=109.8
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
++.|.++.|..+...++.+..+|.|.+-|.... ..+++. .-...|.+++|+|+ .+.++..+...++.+-+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg---~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVG---NVDNGISAASWSPD--EELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc---ceeeee---eccCceEEEeecCC--CcEEEEEeCCcEEEEEecc
Confidence 358999999999999999999999999877632 223333 23567999999999 8888888777776554421
Q ss_pred e----cc---------C---CCcccEEEEEeeec---------------------cccEEeEEEeecCCCcEEEEE----
Q 026295 89 V----ED---------A---QPLQWKLCKSFEST---------------------STQVLDVQFGVSSTSLKLVAA---- 127 (240)
Q Consensus 89 ~----~~---------~---~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~l~~~---- 127 (240)
- .. + ...-.+....|.+. ...=.+|.|-- +|.++++.
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG--DGEYFAVSFVES 217 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc--CCcEEEEEEEec
Confidence 0 00 0 00000111122210 11123588855 99988873
Q ss_pred -eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295 128 -YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 128 -~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~ 206 (240)
.....|++||... .+...........+ +++|-|.+. ++++-....+. +.|.+|..
T Consensus 218 ~~~~RkirV~drEg--~Lns~se~~~~l~~---------------~LsWkPsgs-----~iA~iq~~~sd--~~IvffEr 273 (1265)
T KOG1920|consen 218 ETGTRKIRVYDREG--ALNSTSEPVEGLQH---------------SLSWKPSGS-----LIAAIQCKTSD--SDIVFFER 273 (1265)
T ss_pred cCCceeEEEecccc--hhhcccCccccccc---------------ceeecCCCC-----eEeeeeecCCC--CcEEEEec
Confidence 3337899999762 11111111111111 899999886 66665432100 67888875
Q ss_pred ecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
..-. .-......+..+ .+|..++|+.++
T Consensus 274 NGL~-hg~f~l~~p~de---~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 274 NGLR-HGEFVLPFPLDE---KEVEELAWNSNS 301 (1265)
T ss_pred CCcc-ccccccCCcccc---cchheeeecCCC
Confidence 4321 111111222222 248999999876
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-05 Score=60.29 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=85.6
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-----ccEEEEEEcCCCCCCEEEEEecCC
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-----GAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
..|.--|.++.|+.+...++++. |-.|.+|++..... . -.+..++.|. .-|++..|+|. .-..+.-.+..|
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~-s-FnIVDiKP~nmeeLteVItSaeFhp~-~cn~fmYSsSkG 244 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDG-S-FNIVDIKPHNMEELTEVITSAEFHPE-MCNVFMYSSSKG 244 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCC-c-eEEEeccCccHHHHHHHHhhcccCHh-HcceEEEecCCC
Confidence 35777889999999998888874 57899999986532 1 2233344443 34788899886 235566667789
Q ss_pred eEEEEEeeecc---CCCccc------EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 81 SLLLWEEIVED---AQPLQW------KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 81 ~v~iwd~~~~~---~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
.|++-|++... +....+ ....-+.+-...|..+.|++ +|+++++-.. -+|++||.+..
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~--ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD--NGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC--CCcEEEEecc-ceEEEEecccc
Confidence 99999998431 000000 00011122346778899999 9998887765 48999999864
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=0.00033 Score=56.90 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=60.1
Q ss_pred ccEEeEEEeecCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCC
Q 026295 108 TQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQG 184 (240)
Q Consensus 108 ~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~ 184 (240)
..|...+|.| .|..+++-+. ..++.+|.+.+ ....+.++..+.. ..| |.+.|+|.|.
T Consensus 446 e~vi~FaWEP--~gdkF~vi~g~~~k~tvsfY~~e~--~~~~~~lVk~~dk----------~~~--N~vfwsPkG~---- 505 (698)
T KOG2314|consen 446 ESVIAFAWEP--HGDKFAVISGNTVKNTVSFYAVET--NIKKPSLVKELDK----------KFA--NTVFWSPKGR---- 505 (698)
T ss_pred hheeeeeecc--CCCeEEEEEccccccceeEEEeec--CCCchhhhhhhcc----------ccc--ceEEEcCCCc----
Confidence 5567788989 7776655442 35788888874 1223444444322 223 3899999997
Q ss_pred ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 185 SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 185 ~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
.++++.--. ..|.+..||.+-....... +..|. ..+.+.|.|.|
T Consensus 506 -fvvva~l~s--~~g~l~F~D~~~a~~k~~~------~~eh~-~at~veWDPtG 549 (698)
T KOG2314|consen 506 -FVVVAALVS--RRGDLEFYDTDYADLKDTA------SPEHF-AATEVEWDPTG 549 (698)
T ss_pred -EEEEEEecc--cccceEEEecchhhhhhcc------Ccccc-ccccceECCCC
Confidence 666654220 1178999998753222111 11232 56888999876
No 315
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.02 E-value=0.00023 Score=64.34 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=77.5
Q ss_pred eEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEe-----------Eeeec--------CccEEEEEEcCCCCCC
Q 026295 12 TTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNL-----------KTKVH--------AGAILKVVWVPPEFGD 71 (240)
Q Consensus 12 v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----------~~~~h--------~~~v~~~~~~~~~~~~ 71 (240)
...++|+|+++ ++++-+.++.|++||+.... ...+. .+-.. -.....++++++ |.
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d--G~ 816 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD--GQ 816 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC--Cc
Confidence 45699999998 44555667899999987431 11110 00000 112357889888 88
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeee--------------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES--------------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 137 (240)
++++-..++.|++||..++ ... .+.+ .-.....+++++ +|+.+++-+.++.|++||
T Consensus 817 LYVADs~N~rIrviD~~tg-------~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 817 IYVADSYNHKIKKLDPATK-------RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGE--NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred EEEEECCCCEEEEEECCCC-------eEE-EEeccCCcCCCCCcccccccCCceEEEEeC--CCCEEEEECCCCEEEEEE
Confidence 8888888999999998654 222 2111 112467889988 899888888999999999
Q ss_pred ecC
Q 026295 138 LLD 140 (240)
Q Consensus 138 ~~~ 140 (240)
+.+
T Consensus 887 ~~~ 889 (1057)
T PLN02919 887 LNK 889 (1057)
T ss_pred CCC
Confidence 976
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=3.5e-06 Score=71.51 Aligned_cols=150 Identities=7% Similarity=0.039 Sum_probs=103.8
Q ss_pred EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEE
Q 026295 47 TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVA 126 (240)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 126 (240)
+....+..|+...++++|+-. .+.|+.|+..|.|+++++..+ ........|...|+.+.=+. +|..+++
T Consensus 1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG-------~~e~s~ncH~SavT~vePs~--dgs~~Lt 1160 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSG-------SMEESVNCHQSAVTLVEPSV--DGSTQLT 1160 (1516)
T ss_pred ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCc-------cccccccccccccccccccC--Ccceeee
Confidence 445667788889999999988 889999999999999999887 66777788999999886655 7776655
Q ss_pred EeCCC--cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295 127 AYSDG--HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW 204 (240)
Q Consensus 127 ~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw 204 (240)
.+.-. -..+|++... +...+.+.... ++.|+.... .-+.|... ....||
T Consensus 1161 sss~S~PlsaLW~~~s~-----~~~~Hsf~ed~--------------~vkFsn~~q-----~r~~gt~~-----d~a~~Y 1211 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASST-----GGPRHSFDEDK--------------AVKFSNSLQ-----FRALGTEA-----DDALLY 1211 (1516)
T ss_pred eccccCchHHHhccccc-----cCccccccccc--------------eeehhhhHH-----HHHhcccc-----cceEEE
Confidence 54332 4678998752 44444443321 677876643 33444444 579999
Q ss_pred EeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
|.++.....++.....+ .+-.-+.+.|||+..
T Consensus 1212 DvqT~~~l~tylt~~~~---~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1212 DVQTCSPLQTYLTDTVT---SSYSNNLAHFSPCDT 1243 (1516)
T ss_pred ecccCcHHHHhcCcchh---hhhhccccccCCCcc
Confidence 99998765553322221 122347788888753
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=3.7e-05 Score=38.95 Aligned_cols=38 Identities=29% Similarity=0.560 Sum_probs=33.4
Q ss_pred EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295 47 TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
+++..+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 456667788899999999998 89999999999999996
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00016 Score=60.91 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=98.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE 90 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 90 (240)
.+.|++++ +++|+-|.-+|.|++++...+ + .+...|... ... |.++++|+.||+|.|-.+-+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~------~-~~~~~~s~~------~~~--Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN------P-KTNFDHSSS------ILE--GEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc------c-ccccccccc------ccC--CceEEEecCCCcEEEeeccCC
Confidence 45555554 678999999999999998743 2 333345443 344 999999999999999888665
Q ss_pred cCCCcccEEEEEeeeccccEEeEEEeec---CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295 91 DAQPLQWKLCKSFESTSTQVLDVQFGVS---STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS 167 (240)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 167 (240)
+...++. ...++.+|+++|. +..+.+++|+..| +.++.-+--++ +..+ .+....++|.
T Consensus 104 -------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v-~l~~~eG~I~------ 164 (846)
T KOG2066|consen 104 -------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSV-VLSEGEGPIH------ 164 (846)
T ss_pred -------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---ccce-eeecCccceE------
Confidence 3333332 2367889999993 2245689999988 77776442111 1111 3344555666
Q ss_pred ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
+++|.-+ ++|-+.. --|++||.....
T Consensus 165 ----~i~W~g~-------lIAWand------~Gv~vyd~~~~~ 190 (846)
T KOG2066|consen 165 ----SIKWRGN-------LIAWAND------DGVKVYDTPTRQ 190 (846)
T ss_pred ----EEEecCc-------EEEEecC------CCcEEEeccccc
Confidence 8999744 6777776 469999987654
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.98 E-value=1.1e-06 Score=71.76 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=109.9
Q ss_pred ceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----CCeEEE
Q 026295 11 GTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----DGSLLL 84 (240)
Q Consensus 11 ~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~v~i 84 (240)
.+.|+++..+ ...++.|..+|.|-+-....+- ..--....+|..+.++++|++- +.+.||.|-. |..+.|
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---dSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---DSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcc---cccceecccccccccccccccc-cHHHHHhhhhhhcccCCccc
Confidence 5778887664 3589999999999998876431 1112234567888999999875 2455665532 457999
Q ss_pred EEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 85 WEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
||+..+-..+ +.-..|.. ......+++|-. +.+.+.+|.....++++|++.. +..........+.
T Consensus 134 wdi~s~ltvP---ke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs-------~~~~~svnTk~vq-- 199 (783)
T KOG1008|consen 134 WDINSLLTVP---KESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQS-------LDSVSSVNTKYVQ-- 199 (783)
T ss_pred eecccccCCC---ccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhh-------hhhhhhhhhhhcc--
Confidence 9997651100 11111111 334455788865 8888889988889999999842 2111111121222
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE-eecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE-FDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
.+..+|-... +++.-. | +.|.+|| ...-+....... ......-..+..++|+|-
T Consensus 200 --------G~tVdp~~~n----Y~cs~~-d-----g~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 200 --------GITVDPFSPN----YFCSNS-D-----GDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPT 254 (783)
T ss_pred --------cceecCCCCC----ceeccc-c-----CceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccC
Confidence 4445553321 565554 6 9999999 433222211110 000001114889999884
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00027 Score=60.30 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=61.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
.+++++|+|..-.|+.|-.-|.+.+|... +.+.......|..+|..+.|||+ |..++++..-|.|.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~-----~~e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTN-----TTETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecC-----CceeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 45679999999899999999999999887 33444444579999999999999 99999999999999998763
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.8e-05 Score=61.51 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=75.9
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
...|.-+.|+|.-.++|++..+|.|-+..+. ++.+.++..+...+. +++|.|+ |++++.|-.||+|++.|.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------~qRlwtip~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------WQRLWTIPIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec------cceeEeccCCCCccceeeeecCC--CCEEEEEecCCeEEEEEc
Confidence 3467789999999999999999999998885 567778876777777 9999999 999999999999999999
Q ss_pred eeccCCCcccEEEEEe-eeccccEEeEEEee
Q 026295 88 IVEDAQPLQWKLCKSF-ESTSTQVLDVQFGV 117 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 117 (240)
..+ ..+..+ ......|.++-|+|
T Consensus 92 e~~-------~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKG-------GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCC-------Cceeccccccccchheeeccc
Confidence 876 333332 23456777888864
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00014 Score=60.51 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=86.8
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
..|.--+++..+++++.|+.-|.+.+|+-.... ..+....+-.+.+.....++. ..++|.|+..|.|.++.+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhc
Confidence 345555677889999999999999999986321 112222234455667777777 78888889999999998876
Q ss_pred ccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 90 EDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
..+ .....+..+. .|...|++++|++ ++..+.+|...|+|..-.+..
T Consensus 108 ~~p--~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELP--RDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCC--CcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEech
Confidence 321 1112222222 3678999999999 999999999999998877765
No 323
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0069 Score=48.88 Aligned_cols=162 Identities=11% Similarity=0.131 Sum_probs=85.0
Q ss_pred cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC------------------------------------CcccEEEE
Q 026295 58 AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ------------------------------------PLQWKLCK 101 (240)
Q Consensus 58 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------------------------------------~~~~~~~~ 101 (240)
.|..+.|++. ..-|+.+...|.|-||........ ...+.+..
T Consensus 3 ~v~~vs~a~~--t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPE--TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEETT--TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecCC--CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 4677888777 666778888888887765432110 01234444
Q ss_pred EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCC---
Q 026295 102 SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQ--- 178 (240)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~--- 178 (240)
.+....+.|++++.|. -| +++.|+.+|.+.|.|+|.+ ..+..-.... ........|.+.++.|..-
T Consensus 81 l~~~~~g~vtal~~S~--iG-Fvaigy~~G~l~viD~RGP------avI~~~~i~~--~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSD--IG-FVAIGYESGSLVVIDLRGP------AVIYNENIRE--SFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp EE---S-SEEEEEE-B--TS-EEEEEETTSEEEEEETTTT------EEEEEEEGGG----T-SS----EEEEEEEEEE-T
T ss_pred heeccCCcEeEEecCC--Cc-EEEEEecCCcEEEEECCCC------eEEeeccccc--cccccccccCeeEEEEEEEecC
Confidence 4555678899999875 44 6999999999999999985 3333211111 0011123345557777642
Q ss_pred CCCCCCceEEEEecCCCCCCCeEEEEEeec-CCCCcceeEeeecCCCCCCceEEEE-EecCC
Q 026295 179 KGENQGSSFVLGFNSDTPQLNSSKVWEFDE-AHNRWLPVAELALPEDRSDEVYAVA-WALNI 238 (240)
Q Consensus 179 ~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~-~sp~~ 238 (240)
+......+|.+|... |.+.+|.+.. ....|.... ......+.++|..+. |+.+.
T Consensus 150 ~D~ySSi~L~vGTn~-----G~v~~fkIlp~~~g~f~v~~-~~~~~~~~~~i~~I~~i~~~~ 205 (395)
T PF08596_consen 150 GDGYSSICLLVGTNS-----GNVLTFKILPSSNGRFSVQF-AGATTNHDSPILSIIPINADT 205 (395)
T ss_dssp TSSSEEEEEEEEETT-----SEEEEEEEEE-GGG-EEEEE-EEEE--SS----EEEEEETTT
T ss_pred CCcccceEEEEEeCC-----CCEEEEEEecCCCCceEEEE-eeccccCCCceEEEEEEECCC
Confidence 222334688888888 9999999873 333333211 111123555776665 44443
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=6.6e-05 Score=63.84 Aligned_cols=108 Identities=15% Similarity=0.181 Sum_probs=79.9
Q ss_pred EEEECCCCCEEEEEe----CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 14 SSSWNYCGQRLATGS----TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
-..|+|...+||+++ ..|.|.||--.+ ++-..+. ..-.+.+++|.|. .-.|+.+-.-|.+.+|....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtG------EPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTG------EPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCC------CCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCC
Confidence 358999999999987 448888885432 2211111 1122457999997 66778887788999999865
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
. +.-.....|..+|..+.||| +|..++++..-|.|.+|.+.
T Consensus 91 ~-------e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 T-------ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred c-------eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 3 33333346889999999999 99999999999999999876
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=6.1e-05 Score=38.07 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=33.0
Q ss_pred EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295 98 KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137 (240)
Q Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 137 (240)
++...+..+...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP--DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC--CCCEEEEecCCCeEEEcC
Confidence 56667777888999999988 778999999999999995
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00012 Score=60.12 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=63.9
Q ss_pred ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEE-eEEEeecCCCcEEEEEeCCCcEEE
Q 026295 57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVL-DVQFGVSSTSLKLVAAYSDGHVKV 135 (240)
Q Consensus 57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~i 135 (240)
..+.-+.|+|. -+++|.+..+|.|-+..+. |+.+.+++-+...++ +++|.| +|+.+++|-.||+|++
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n--------~qRlwtip~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN--------WQRLWTIPIPGENVTASLCWRP--DGKLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec--------cceeEeccCCCCccceeeeecC--CCCEEEEEecCCeEEE
Confidence 45778999998 8999999999999998875 378888886666666 999999 9999999999999999
Q ss_pred EEecCcc
Q 026295 136 YELLDPL 142 (240)
Q Consensus 136 w~~~~~~ 142 (240)
.|..++.
T Consensus 89 ~Dve~~~ 95 (665)
T KOG4640|consen 89 HDVEKGG 95 (665)
T ss_pred EEccCCC
Confidence 9998853
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.73 E-value=0.0042 Score=50.81 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=80.5
Q ss_pred hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
+...+-....+.++|+|++++.++ ||.-.||... .++... .+.-....|.+. +. +++-.....|.|
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~-----~~r~k~-----~G~g~~~vw~~~--n~-yAv~~~~~~I~I 93 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTAL-----AWRNKA-----FGSGLSFVWSSR--NR-YAVLESSSTIKI 93 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETT-----TTEEEE-----EEE-SEEEE-TS--SE-EEEE-TTS-EEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEcc-----CCcccc-----cCceeEEEEecC--cc-EEEEECCCeEEE
Confidence 334445678999999999999965 5777788754 223222 244557889885 55 666666888999
Q ss_pred E-EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295 85 W-EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 85 w-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+ ++... ....++.. ..+..+ | .|..|...+. +.|.+||..+ ...+.++... ++.
T Consensus 94 ~kn~~~~--------~~k~i~~~-~~~~~I-f----~G~LL~~~~~-~~i~~yDw~~------~~~i~~i~v~--~vk-- 148 (443)
T PF04053_consen 94 YKNFKNE--------VVKSIKLP-FSVEKI-F----GGNLLGVKSS-DFICFYDWET------GKLIRRIDVS--AVK-- 148 (443)
T ss_dssp EETTEE---------TT-----S-S-EEEE-E-----SSSEEEEET-TEEEEE-TTT--------EEEEESS---E-E--
T ss_pred EEcCccc--------cceEEcCC-cccceE-E----cCcEEEEECC-CCEEEEEhhH------cceeeEEecC--CCc--
Confidence 5 44332 11222221 123333 2 2665666554 4899999987 6777766543 234
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
.|.|++++. +++..+. ..+.|++....
T Consensus 149 --------~V~Ws~~g~-----~val~t~------~~i~il~~~~~ 175 (443)
T PF04053_consen 149 --------YVIWSDDGE-----LVALVTK------DSIYILKYNLE 175 (443)
T ss_dssp --------EEEE-TTSS-----EEEEE-S-------SEEEEEE-HH
T ss_pred --------EEEEECCCC-----EEEEEeC------CeEEEEEecch
Confidence 899999987 7777775 57888876543
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.68 E-value=0.014 Score=44.85 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=72.9
Q ss_pred ccceEEEEECC-CCCEEEEEeCCCc-EEEEeCCCCCCCcEEEEeEeeecCccEE--EEEEcCCCCCCEEEEE-----ecC
Q 026295 9 DKGTTSSSWNY-CGQRLATGSTDGT-LSIFDSPDPSSSSFTCNLKTKVHAGAIL--KVVWVPPEFGDAVACI-----CSD 79 (240)
Q Consensus 9 ~~~v~~~~~s~-~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~l~s~-----~~d 79 (240)
..+...++.+| .+..++.+..-|+ ..+||.. +++....+....+.-. .-.|+++ |++|++. ...
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-----~g~~~~~~~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCR-----TGQLLQRLWAPPGRHFYGHGVFSPD--GRLLYTTENDYETGR 76 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcC-----CCceeeEEcCCCCCEEecCEEEcCC--CCEEEEeccccCCCc
Confidence 34566788899 5567777777665 6678987 4445544433222221 3579999 9988875 335
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 128 (240)
|.|-|||.... ++.+.++..+.-.-..+.+.| +|..|+++.
T Consensus 77 G~IgVyd~~~~------~~ri~E~~s~GIGPHel~l~p--DG~tLvVAN 117 (305)
T PF07433_consen 77 GVIGVYDAARG------YRRIGEFPSHGIGPHELLLMP--DGETLVVAN 117 (305)
T ss_pred EEEEEEECcCC------cEEEeEecCCCcChhhEEEcC--CCCEEEEEc
Confidence 78999999732 378888888777778889999 997777764
No 329
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.64 E-value=0.011 Score=50.24 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=81.3
Q ss_pred EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE
Q 026295 46 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV 125 (240)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 125 (240)
|....++..--....-+.-+.. +...+.-.....+.|||.+... .+-...+ .....|..+.|...++++.++
T Consensus 19 w~~t~~~~T~i~~~~li~gss~--~k~a~V~~~~~~LtIWD~~~~~-----lE~~~~f-~~~~~I~dLDWtst~d~qsiL 90 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSI--KKIAVVDSSRSELTIWDTRSGV-----LEYEESF-SEDDPIRDLDWTSTPDGQSIL 90 (631)
T ss_pred EEEEEEEecCCCCcceEeeccc--CcEEEEECCCCEEEEEEcCCcE-----EEEeeee-cCCCceeeceeeecCCCCEEE
Confidence 3444444433334444544444 5544443334479999997651 1222233 346889999998877999999
Q ss_pred EEeCCCcEEEEEecCc---ccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEE
Q 026295 126 AAYSDGHVKVYELLDP---LILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSK 202 (240)
Q Consensus 126 ~~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~ 202 (240)
+.+..+.|.+|.-... .....|..+.++.......++ +.+..|.+++ .|++|+. +.+.
T Consensus 91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~-------Igds~Wl~~G------~LvV~sG------Nqlf 151 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP-------IGDSIWLKDG------TLVVGSG------NQLF 151 (631)
T ss_pred EEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC-------ccceeEecCC------eEEEEeC------CEEE
Confidence 9999999999864211 122345555555432111111 1288999999 4777665 7899
Q ss_pred EEEee
Q 026295 203 VWEFD 207 (240)
Q Consensus 203 iw~~~ 207 (240)
|++-.
T Consensus 152 v~dk~ 156 (631)
T PF12234_consen 152 VFDKW 156 (631)
T ss_pred EECCC
Confidence 99753
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0027 Score=54.35 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=86.6
Q ss_pred EEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecccc-EEeEEEeecCCCcEEEEEeCCCc-----EEEE
Q 026295 63 VWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQ-VLDVQFGVSSTSLKLVAAYSDGH-----VKVY 136 (240)
Q Consensus 63 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~-----v~iw 136 (240)
+|++. +..++.|+.+|.|.+.+-.. +.++.|+.+... |..+.... ...+|++.+.|+. |+||
T Consensus 30 c~~s~--~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSS--TGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCC--CceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEe
Confidence 56677 78899999999998877543 566778776666 44443322 3357787776654 8999
Q ss_pred EecCcccccceeEE--eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295 137 ELLDPLILKNWQLQ--AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL 214 (240)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~ 214 (240)
++....+....++. ..+..+..+. ....+.+++.+.+-. .+|+|..+ |.|..+.-+-...+-.
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~-----~~~p~s~l~Vs~~l~-----~Iv~Gf~n-----G~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPT-----NPSPASSLAVSEDLK-----TIVCGFTN-----GLVICYKGDILRDRGS 162 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCC-----CCCcceEEEEEcccc-----EEEEEecC-----cEEEEEcCcchhcccc
Confidence 99864333223333 2222211111 111112677777765 79999998 9999997532111111
Q ss_pred eeEeeecCCCCCCceEEEEEecCCC
Q 026295 215 PVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 215 ~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
...+ .+. -.++|+.+++.-|+.
T Consensus 163 -r~~~-~~~-~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 163 -RQDY-SHR-GKEPITGLALRSDGK 184 (933)
T ss_pred -ceee-ecc-CCCCceeeEEecCCc
Confidence 1111 111 234899999887763
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.61 E-value=0.016 Score=43.61 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=92.5
Q ss_pred chhcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCC
Q 026295 3 KAVATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
+.+.+..+.+..++|+|+.+ ++++....+.|..++.. ++.+..+.-. .+..-.|++..+ +.++++.-.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~------G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~ 86 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD------GKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQ 86 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTT
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC------CCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCC
Confidence 44666666799999999755 66666677777667754 2445554422 345778898776 76666655688
Q ss_pred eEEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
.+.++++...... ..-.....+. .....+-.++|+| .+..|+.+-......+|.+.............. ..
T Consensus 87 ~L~~~~~~~~~~~-~~~~~~~~~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~ 162 (248)
T PF06977_consen 87 RLYIFTIDDDTTS-LDRADVQKISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QD 162 (248)
T ss_dssp EEEEEEE----TT---EEEEEEEE---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HH
T ss_pred cEEEEEEeccccc-cchhhceEEecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccc-cc
Confidence 8888888432110 0001122222 2345688999998 666666666666778888764110000111100 01
Q ss_pred ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
... .....-...+++++|.... +++..... ..|.++|..
T Consensus 163 ~~~----~~~~~~d~S~l~~~p~t~~----lliLS~es-----~~l~~~d~~ 201 (248)
T PF06977_consen 163 LDD----DKLFVRDLSGLSYDPRTGH----LLILSDES-----RLLLELDRQ 201 (248)
T ss_dssp HH-----HT--SS---EEEEETTTTE----EEEEETTT-----TEEEEE-TT
T ss_pred ccc----ccceeccccceEEcCCCCe----EEEEECCC-----CeEEEECCC
Confidence 110 0001112238889998752 55665555 888888843
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.0013 Score=54.93 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=84.6
Q ss_pred cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295 55 HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134 (240)
Q Consensus 55 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 134 (240)
+...|.--++... +++++.|+.-|.+.+|+-..+. .......+....+..+..++ +..++|+|+..|.|.
T Consensus 32 ~~~~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~------~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 32 FPARVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGE------MRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVS 101 (726)
T ss_pred CcceEEEEEeecC--CceEEEecccceEEEEecCchh------hhcccccCccceEEEEEecc--hhHhhhhhcCCceEE
Confidence 3445655666666 8999999999999999875541 11222222445566677777 788889999999999
Q ss_pred EEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
++.++...+.. ........ -.+.|.|++++|++++. .+.+|.+. |+|..-.++.
T Consensus 102 v~ql~~~~p~~-~~~~t~~d---------~~~~~rVTal~Ws~~~~-----k~ysGD~~-----Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRD-LDYVTPCD---------KSHKCRVTALEWSKNGM-----KLYSGDSQ-----GKVVLTELDS 155 (726)
T ss_pred eehhhccCCCc-ceeecccc---------ccCCceEEEEEeccccc-----EEeecCCC-----ceEEEEEech
Confidence 99887622111 11111110 11556667999999998 79999888 9999988877
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.57 E-value=0.0077 Score=38.84 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.3
Q ss_pred EEEEEEcCC-CCC-CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 59 ILKVVWVPP-EFG-DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 59 v~~~~~~~~-~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
|++|++..- ..| +.|+.|+.|..|++|+-. ..+.++... ..|..++-.. . ..++.+-.+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------e~~~Ei~e~-~~v~~L~~~~--~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------EIVAEITET-DKVTSLCSLG--G-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------cEEEEEecc-cceEEEEEcC--C-CEEEEEecCCEEEEE
Confidence 556665431 112 578999999999999863 566666654 5666666554 4 559999999999999
Q ss_pred Eec
Q 026295 137 ELL 139 (240)
Q Consensus 137 ~~~ 139 (240)
+-.
T Consensus 69 ~~~ 71 (111)
T PF14783_consen 69 DRS 71 (111)
T ss_pred eCc
Confidence 864
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.55 E-value=0.03 Score=45.28 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=50.5
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eee------cCccEEEEEEcC---CCCC---CEE
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKV------HAGAILKVVWVP---PEFG---DAV 73 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~------h~~~v~~~~~~~---~~~~---~~l 73 (240)
..+.|++++.|.-| ++|.|.++|.+.|.|++.+ ..+.. +.. ....|.++.|+- ..++ -.+
T Consensus 85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP-----avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP-----AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT-----EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC-----eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 36789999997544 9999999999999999865 23322 222 234577788762 1112 467
Q ss_pred EEEecCCeEEEEEeee
Q 026295 74 ACICSDGSLLLWEEIV 89 (240)
Q Consensus 74 ~s~~~d~~v~iwd~~~ 89 (240)
++|...|.+.+|.+.-
T Consensus 159 ~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEec
Confidence 8888899999998863
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.54 E-value=0.0085 Score=50.46 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=52.9
Q ss_pred cccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccc------eeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295 107 STQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKN------WQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179 (240)
Q Consensus 107 ~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~ 179 (240)
......+.++| +|+++++++ .+++|.|+|+.+....-. -.+..+......+ ...+|.+++
T Consensus 320 GKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-----------LHTaFDg~G 386 (635)
T PRK02888 320 PKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-----------LHTAFDGRG 386 (635)
T ss_pred CCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-----------ceEEECCCC
Confidence 35567899999 999876665 589999999986322100 1122222222222 267898887
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
. .+.+-+-| ..|-.|++..
T Consensus 387 ~-----aytslf~d-----sqv~kwn~~~ 405 (635)
T PRK02888 387 N-----AYTTLFLD-----SQIVKWNIEA 405 (635)
T ss_pred C-----EEEeEeec-----ceeEEEehHH
Confidence 6 77778888 9999999876
No 336
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.54 E-value=0.01 Score=47.84 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=65.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+..+..++.+|.+..||.. +++.+-.... ....... .. +..++.++.||.+..+|..++ +.+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~-----tG~~~W~~~~--~~~~~p~--~~--~~~vyv~~~~G~l~~~d~~tG-------~~~ 302 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLR-----SGRVLWKRDA--SSYQGPA--VD--DNRLYVTDADGVVVALDRRSG-------SEL 302 (377)
T ss_pred CCEEEEEEcCCEEEEEECC-----CCcEEEeecc--CCccCce--Ee--CCEEEEECCCCeEEEEECCCC-------cEE
Confidence 4577778888999999987 4444433331 1111111 12 566777788999999998765 333
Q ss_pred EEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 101 KSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 101 ~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
-...... ........ .+..+++++.+|.|.++|..+ ++.+..+..+
T Consensus 303 W~~~~~~~~~~ssp~i----~g~~l~~~~~~G~l~~~d~~t------G~~~~~~~~~ 349 (377)
T TIGR03300 303 WKNDELKYRQLTAPAV----VGGYLVVGDFEGYLHWLSRED------GSFVARLKTD 349 (377)
T ss_pred EccccccCCccccCEE----ECCEEEEEeCCCEEEEEECCC------CCEEEEEEcC
Confidence 3332111 11122222 355788899999999999877 5555555433
No 337
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.51 E-value=0.031 Score=44.34 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=73.2
Q ss_pred CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----------CCeEEEEEeeeccCCCcccEEE
Q 026295 31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----------DGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+.|.+.|.. +.+.+.++..-..+- .+ ++|+ ++.++.+.. +..|.+||..+. +.+
T Consensus 27 ~~v~ViD~~-----~~~v~g~i~~G~~P~-~~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-------~~~ 90 (352)
T TIGR02658 27 TQVYTIDGE-----AGRVLGMTDGGFLPN-PV-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH-------LPI 90 (352)
T ss_pred ceEEEEECC-----CCEEEEEEEccCCCc-ee-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC-------cEE
Confidence 789999998 667777776422322 34 8999 887776655 679999999887 777
Q ss_pred EEeeeccc-------cEEeEEEeecCCCcEEEEEe-C-CCcEEEEEecCcccccceeEEeeeec
Q 026295 101 KSFESTST-------QVLDVQFGVSSTSLKLVAAY-S-DGHVKVYELLDPLILKNWQLQAEFQN 155 (240)
Q Consensus 101 ~~~~~~~~-------~v~~~~~~~~~~~~~l~~~~-~-dg~v~iw~~~~~~~~~~~~~~~~~~~ 155 (240)
..+..... ....++++| +|++|++.. . +..|.+.|+.+ .+.+.++..
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~------~kvv~ei~v 146 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEG------KAFVRMMDV 146 (352)
T ss_pred eEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCC------CcEEEEEeC
Confidence 66663211 223688888 999888776 3 68999999987 566666654
No 338
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.49 E-value=0.0093 Score=48.04 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=84.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295 20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL 99 (240)
Q Consensus 20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 99 (240)
.+.++++++.++.|.-+|.. +++.+-.+............ . +..++.++.++.+..+|..++ +.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~-----tG~~~W~~~~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG-------~~ 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAE-----TGKRLWRVDLDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDG-------KE 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEcc-----CCcEeeeecCCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCC-------cE
Confidence 46688888888999999987 45555444432221112221 2 566778888999999998766 43
Q ss_pred EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295 100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179 (240)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~ 179 (240)
+-..... ..+.+ +|...+..++.++.+|.|..||.++. +.+-++........... .+ +.... ++
T Consensus 128 ~W~~~~~-~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG------~~~W~~~~~~~~~~~~~--~~---sp~~~-~~ 191 (377)
T TIGR03300 128 LWRAKLS-SEVLS---PPLVANGLVVVRTNDGRLTALDAATG------ERLWTYSRVTPALTLRG--SA---SPVIA-DG 191 (377)
T ss_pred eeeeccC-ceeec---CCEEECCEEEEECCCCeEEEEEcCCC------ceeeEEccCCCceeecC--CC---CCEEE-CC
Confidence 3333222 11211 11112345777788999999999873 33333322111100000 00 11111 11
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL 214 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~ 214 (240)
.++++..+ +.+..+|..++...|.
T Consensus 192 ------~v~~~~~~-----g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 192 ------GVLVGFAG-----GKLVALDLQTGQPLWE 215 (377)
T ss_pred ------EEEEECCC-----CEEEEEEccCCCEeee
Confidence 46667776 8898898888776664
No 339
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.36 E-value=0.00093 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=28.5
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSP 39 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~ 39 (240)
...|.+++|+|...+||.+..+|.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999985
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.34 E-value=0.01 Score=44.28 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCcEEEEeCCCCCCCcEEEEeEeee---cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295 30 DGTLSIFDSPDPSSSSFTCNLKTKV---HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST 106 (240)
Q Consensus 30 d~~i~iw~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 106 (240)
+|+|..||.. +++.+-...- ....+ .... +. +..+++++.++.+..||..++ +.+-.+...
T Consensus 2 ~g~l~~~d~~-----tG~~~W~~~~~~~~~~~~-~~~~-~~--~~~v~~~~~~~~l~~~d~~tG-------~~~W~~~~~ 65 (238)
T PF13360_consen 2 DGTLSALDPR-----TGKELWSYDLGPGIGGPV-ATAV-PD--GGRVYVASGDGNLYALDAKTG-------KVLWRFDLP 65 (238)
T ss_dssp TSEEEEEETT-----TTEEEEEEECSSSCSSEE-ETEE-EE--TTEEEEEETTSEEEEEETTTS-------EEEEEEECS
T ss_pred CCEEEEEECC-----CCCEEEEEECCCCCCCcc-ceEE-Ee--CCEEEEEcCCCEEEEEECCCC-------CEEEEeecc
Confidence 6788899987 4555555542 12222 1122 23 666777788999999998766 655555532
Q ss_pred cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCce
Q 026295 107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSS 186 (240)
Q Consensus 107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~ 186 (240)
..+...-.. .+..+++++.++.+..+|..+ ++....+......... ........+. +. .
T Consensus 66 -~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~t------G~~~W~~~~~~~~~~~----~~~~~~~~~~--~~-----~ 124 (238)
T PF13360_consen 66 -GPISGAPVV---DGGRVYVGTSDGSLYALDAKT------GKVLWSIYLTSSPPAG----VRSSSSPAVD--GD-----R 124 (238)
T ss_dssp -SCGGSGEEE---ETTEEEEEETTSEEEEEETTT------SCEEEEEEE-SSCTCS----TB--SEEEEE--TT-----E
T ss_pred -ccccceeee---cccccccccceeeeEecccCC------cceeeeeccccccccc----cccccCceEe--cC-----E
Confidence 222111122 344467777888999999877 3443332111000000 0000022222 33 5
Q ss_pred EEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295 187 FVLGFNSDTPQLNSSKVWEFDEAHNRWLP 215 (240)
Q Consensus 187 l~~~~~dd~~~~~~i~iw~~~~~~~~~~~ 215 (240)
++++..+ +.|..+|..+++..|..
T Consensus 125 ~~~~~~~-----g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 125 LYVGTSS-----GKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEETC-----SEEEEEETTTTEEEEEE
T ss_pred EEEEecc-----CcEEEEecCCCcEEEEe
Confidence 7777766 89999998888766654
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.019 Score=50.75 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=52.6
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE---EEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL---KVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
.++|++++|+.+|++++.|-.+|.|.+||.. +.+.++.+..|..+.. .+.|... +..++++..-|. +|
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-----~~k~l~~i~e~~ap~t~vi~v~~t~~--nS~llt~D~~Gs--f~ 200 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-----RAKILKVITEHGAPVTGVIFVGRTSQ--NSKLLTSDTGGS--FW 200 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEcc-----CCcceeeeeecCCccceEEEEEEeCC--CcEEEEccCCCc--eE
Confidence 4589999999999999999999999999998 4456666665555543 4444444 566777766665 56
Q ss_pred Eee
Q 026295 86 EEI 88 (240)
Q Consensus 86 d~~ 88 (240)
.+.
T Consensus 201 ~lv 203 (1206)
T KOG2079|consen 201 KLV 203 (1206)
T ss_pred EEE
Confidence 654
No 342
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.0077 Score=51.14 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=95.8
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-----EEEEEee
Q 026295 20 CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-----LLLWEEI 88 (240)
Q Consensus 20 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-----v~iwd~~ 88 (240)
.+...++|+.| .++..||...+ +|..+..+........ ++- -. |.+.+.|+.||. |-.||..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~~a~M~~~R~~~~-v~~-l~--g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTPVAPMNTKRSDFG-VAV-LD--GKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCC---ceeccCCccCccccce-eEE-EC--CEEEEEeccccccccccEEEecCC
Confidence 45788889888 34667887755 6776666654333222 222 23 788889999874 5555654
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC------cEEEEEecCcccccceeEEeeeecccceeec
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG------HVKVYELLDPLILKNWQLQAEFQNAIDSVTM 162 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (240)
. ..|..+..+.......-.+.+ +|.+.++|+.++ +|..||..+ ..|..+..+.......
T Consensus 405 ~-----~~W~~va~m~~~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~YDP~t----~~W~~~~~M~~~R~~~-- 469 (571)
T KOG4441|consen 405 T-----NKWTPVAPMLTRRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVECYDPET----NTWTLIAPMNTRRSGF-- 469 (571)
T ss_pred C-----CcccccCCCCcceeeeEEEEE----CCEEEEEcCcCCCccccceEEEEcCCC----CceeecCCcccccccc--
Confidence 4 577877766654445544555 788888888554 467788776 4476665554332221
Q ss_pred cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE
Q 026295 163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA 217 (240)
Q Consensus 163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~ 217 (240)
.++.- + +.++++|+.|+...+.+|..||..+.+ |....
T Consensus 470 ---------g~a~~-~-----~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~ 507 (571)
T KOG4441|consen 470 ---------GVAVL-N-----GKIYVVGGFDGTSALSSVERYDPETNQ--WTMVA 507 (571)
T ss_pred ---------eEEEE-C-----CEEEEECCccCCCccceEEEEcCCCCc--eeEcc
Confidence 12211 1 227888887743334567778876654 55543
No 343
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.24 E-value=0.048 Score=40.68 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=76.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecC---ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcc
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHA---GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ 96 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 96 (240)
+..++.+..++.+..+|.. +++.+... .... ........... +..++.+..++.|..+|..++
T Consensus 76 ~~~v~v~~~~~~l~~~d~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG------ 142 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAK-----TGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTG------ 142 (238)
T ss_dssp TTEEEEEETTSEEEEEETT-----TSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTT------
T ss_pred ccccccccceeeeEecccC-----CcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCC------
Confidence 3455555566667777755 33444432 2110 01111122122 566777777899999998776
Q ss_pred cEEEEEeeecccc----------E-EeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 97 WKLCKSFESTSTQ----------V-LDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 97 ~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
+.+......... + ..+.+ . ++ .+..++.++.+.-+|+.+. +..-... .....
T Consensus 143 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~v~~~~~~g~~~~~d~~tg------~~~w~~~--~~~~~---- 205 (238)
T PF13360_consen 143 -KLLWKYPVGEPRGSSPISSFSDINGSPVI-S--DG-RVYVSSGDGRVVAVDLATG------EKLWSKP--ISGIY---- 205 (238)
T ss_dssp -EEEEEEESSTT-SS--EEEETTEEEEEEC-C--TT-EEEEECCTSSEEEEETTTT------EEEEEEC--SS-EC----
T ss_pred -cEEEEeecCCCCCCcceeeecccccceEE-E--CC-EEEEEcCCCeEEEEECCCC------CEEEEec--CCCcc----
Confidence 555555432211 1 11222 1 34 5777777775333388773 3221111 11111
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL 214 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~ 214 (240)
. ...+.+. .|++++.+ +.|..||+.+++..|+
T Consensus 206 ------~-~~~~~~~-----~l~~~~~~-----~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 206 ------S-LPSVDGG-----TLYVTSSD-----GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ------E-CEECCCT-----EEEEEETT-----TEEEEEETTTTEEEEE
T ss_pred ------C-CceeeCC-----EEEEEeCC-----CEEEEEECCCCCEEeE
Confidence 1 1234444 67777777 9999999999876664
No 344
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0014 Score=35.38 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=26.8
Q ss_pred eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295 170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR 212 (240)
Q Consensus 170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~ 212 (240)
+..++|+|... +||+|..+ |.|.||.+ +.+..
T Consensus 14 v~~~~w~P~md-----LiA~~t~~-----g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 14 VSCMSWCPTMD-----LIALGTED-----GEVLVYRL-NWQRI 45 (47)
T ss_pred EEEEEECCCCC-----EEEEEECC-----CeEEEEEC-CCcCc
Confidence 34899999998 99999999 99999998 44433
No 345
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.16 E-value=0.018 Score=48.93 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCc-----EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC------eEEEEEee
Q 026295 20 CGQRLATGSTDGT-----LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG------SLLLWEEI 88 (240)
Q Consensus 20 ~~~~l~~~~~d~~-----i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~------~v~iwd~~ 88 (240)
+|...|+|+.||. |..||...+ .|..+..+...........+ . |.+.+.|+.++ ++..||..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~r~~~gv~~~--~--g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTRRSGHGVAVL--G--GKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCC---cccccCCCCcceeeeEEEEE--C--CEEEEEcCcCCCccccceEEEEcCC
Confidence 5778888988864 667777644 56655544332222222222 3 67777777654 45667765
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCc-----EEEEEecCcccccceeEEeeeecccceeecc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH-----VKVYELLDPLILKNWQLQAEFQNAIDSVTMF 163 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-----v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (240)
+ ..|..+..+...........+ ++.+.+.|+.|+. |..||.++ .+|..+..+......+.
T Consensus 453 t-----~~W~~~~~M~~~R~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~----~~W~~v~~m~~~rs~~g-- 517 (571)
T KOG4441|consen 453 T-----NTWTLIAPMNTRRSGFGVAVL----NGKIYVVGGFDGTSALSSVERYDPET----NQWTMVAPMTSPRSAVG-- 517 (571)
T ss_pred C-----CceeecCCcccccccceEEEE----CCEEEEECCccCCCccceEEEEcCCC----CceeEcccCcccccccc--
Confidence 5 578888888765555554444 7888888887763 67788776 44666644433322211
Q ss_pred ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEe
Q 026295 164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAE 218 (240)
Q Consensus 164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~ 218 (240)
.+.+ + +.+.++|+.|....+++|..||..++. |.....
T Consensus 518 --------~~~~---~----~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 518 --------VVVL---G----GKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred --------EEEE---C----CEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1222 1 227888887755555889999876654 665544
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.021 Score=46.62 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=64.1
Q ss_pred ceEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEE
Q 026295 11 GTTSSSWNYCGQRLATGS---TD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLW 85 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iw 85 (240)
.+..-+|+|+++.++--. .. ..+.++++... ....+..+.++. ..-+|+|+ |+.++ +...|+...||
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~~~g~~---~~P~fspD--G~~l~f~~~rdg~~~iy 265 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILNFNGNN---GAPAFSPD--GSKLAFSSSRDGSPDIY 265 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeeccCCcc---CCccCCCC--CCEEEEEECCCCCccEE
Confidence 455668899887655442 22 35778888744 223344444443 36789999 87655 55667765555
Q ss_pred --EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEec
Q 026295 86 --EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELL 139 (240)
Q Consensus 86 --d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~ 139 (240)
|+..+ . +..+....+.-..-.|+| +|.+++..+ ..|.-.||-..
T Consensus 266 ~~dl~~~-------~-~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 266 LMDLDGK-------N-LPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred EEcCCCC-------c-ceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEEC
Confidence 55443 2 222333323334667888 999876665 44555555443
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.09 E-value=0.029 Score=44.83 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCCCEEEEEe---------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 18 NYCGQRLATGS---------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 18 s~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
|||+++++... ..+.+.|||+.. .+....... ...+....|+|+ |+.++... ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-----~~~~~l~~~-~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-----GEITPLTPP-PPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-----TEEEESS-E-ETTBSEEEE-SS--STEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC-----CceEECcCC-ccccccceeecC--CCeeEEEe-cCceEEEECC
Confidence 57887776632 235688899983 232222222 567889999999 99888764 6789888765
Q ss_pred eccCCCcccEEEE-Eeee-------c---------cccEEeEEEeecCCCcEEEEEeCC-CcEEEEEe
Q 026295 89 VEDAQPLQWKLCK-SFES-------T---------STQVLDVQFGVSSTSLKLVAAYSD-GHVKVYEL 138 (240)
Q Consensus 89 ~~~~~~~~~~~~~-~~~~-------~---------~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~ 138 (240)
.+ ...+ +..+ . -..-..+-||| ++++|+....| ..|+.+.+
T Consensus 72 ~~-------~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 72 TG-------QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TS-------EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEE
T ss_pred CC-------CeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEe
Confidence 43 1111 1111 0 11235688999 99988876643 44555444
No 348
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.01 E-value=0.14 Score=41.74 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=94.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEc---CCCCCCEEEEEecCCeEEEEEeeeccCC---C
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWV---PPEFGDAVACICSDGSLLLWEEIVEDAQ---P 94 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~ 94 (240)
...+++|+..|.++||+....+.....++...+ -+.+|..+..- +......|+. -.-..+.+|.+...++. +
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 369999999999999999654322222333333 25788887753 2211234444 45678899998654332 1
Q ss_pred cccEEEEEeee-ccccEEeEEEeecC--C-CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295 95 LQWKLCKSFES-TSTQVLDVQFGVSS--T-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS 170 (240)
Q Consensus 95 ~~~~~~~~~~~-~~~~v~~~~~~~~~--~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (240)
..++....+.. .......+++-|.. . ..++.+-+.||++.+|+-+. ......+.. ..++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~------~~f~~~lp~--~llP--------- 177 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES------FAFSRFLPD--FLLP--------- 177 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc------EEEEEEcCC--CCCC---------
Confidence 22232222221 12333445555531 2 35789999999999999765 332333322 1111
Q ss_pred eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
..+.|+|... .|++++++ ..+..|.+.
T Consensus 178 gPl~Y~~~tD-----sfvt~sss-----~~l~~Yky~ 204 (418)
T PF14727_consen 178 GPLCYCPRTD-----SFVTASSS-----WTLECYKYQ 204 (418)
T ss_pred cCeEEeecCC-----EEEEecCc-----eeEEEecHH
Confidence 1688998887 78888887 899999874
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.99 E-value=0.08 Score=46.41 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=67.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCcEEEEe-Eee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295 23 RLATGSTDGTLSIFDSPDPSSSSFTCNL-KTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL 99 (240)
Q Consensus 23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 99 (240)
.-+.|-.+..+..||.+..+ -+++. ..+ .......+++=+.+ -+||.|+.+|.||+||-... +.
T Consensus 544 ~tflGls~n~lfriDpR~~~---~k~v~~~~k~Y~~~~~Fs~~aTt~~---G~iavgs~~G~IRLyd~~g~-------~A 610 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSG---NKLVDSQSKQYSSKNNFSCFATTED---GYIAVGSNKGDIRLYDRLGK-------RA 610 (794)
T ss_pred ceEEEECCCceEEeccCCCC---CceeeccccccccCCCceEEEecCC---ceEEEEeCCCcEEeecccch-------hh
Confidence 45667777889999987542 11221 111 22334556655443 45889999999999995432 34
Q ss_pred EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
...+++...+|..|..+. +|+++++.+. ..+.+++..
T Consensus 611 KT~lp~lG~pI~~iDvt~--DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTA--DGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecC--CCcEEEEeec-ceEEEEEEe
Confidence 445667778999999988 9998877664 578888864
No 350
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0042 Score=54.63 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295 20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL 99 (240)
Q Consensus 20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 99 (240)
.+-.++.|+..|.+-..|...+ ..+...-..-.++|.+++|+.+ |..++.|-.+|.|.+||...+ ++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~d--g~~l~~G~~~G~V~v~D~~~~-------k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQD--GSLLLAGLGDGHVTVWDMHRA-------KI 164 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc----cchhhcCCccCCcceeeEecCC--CceeccccCCCcEEEEEccCC-------cc
Confidence 4557888888899988887632 1111111223578999999998 999999999999999999877 66
Q ss_pred EEEeeeccccEEeEEEee-cCCCcEEEEEeCCCcEEEEEe
Q 026295 100 CKSFESTSTQVLDVQFGV-SSTSLKLVAAYSDGHVKVYEL 138 (240)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iw~~ 138 (240)
++.+..+..+...+-+.- ...+..++++..-|. +|.+
T Consensus 165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777766555554443321 113445677666664 6665
No 351
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.96 E-value=0.06 Score=45.87 Aligned_cols=134 Identities=13% Similarity=0.354 Sum_probs=79.2
Q ss_pred CeEEEEEeeec-cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 80 GSLLLWEEIVE-DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 80 ~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
|.|+.|..... +.....|....++......+.-+.-+. .++..++-+...++.|||.+... .+....+ ....
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss--~~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f-~~~~ 73 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSS--IKKIAVVDSSRSELTIWDTRSGV----LEYEESF-SEDD 73 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecc--cCcEEEEECCCCEEEEEEcCCcE----EEEeeee-cCCC
Confidence 45667765532 223466777777776556666666655 55533443344578999998732 2222233 2334
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe-----ecCCCCcceeEeeecCCCCC-CceEEE
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF-----DEAHNRWLPVAELALPEDRS-DEVYAV 232 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~-----~~~~~~~~~~~~~~~~~~h~-~~v~~v 232 (240)
.|. ++.|...... ..+|++|.. +.|.+|.- ......|.....+.... |+ .+|.+.
T Consensus 74 ~I~----------dLDWtst~d~--qsiLaVGf~------~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~-~T~h~Igds 134 (631)
T PF12234_consen 74 PIR----------DLDWTSTPDG--QSILAVGFP------HHVLLYTQLRYDYTNKGPSWAPIRKIDISS-HTPHPIGDS 134 (631)
T ss_pred cee----------eceeeecCCC--CEEEEEEcC------cEEEEEEccchhhhcCCcccceeEEEEeec-CCCCCccce
Confidence 454 8888765441 336667665 78888853 34444566665554332 33 589999
Q ss_pred EEecCCC
Q 026295 233 AWALNIG 239 (240)
Q Consensus 233 ~~sp~~~ 239 (240)
.|-+||.
T Consensus 135 ~Wl~~G~ 141 (631)
T PF12234_consen 135 IWLKDGT 141 (631)
T ss_pred eEecCCe
Confidence 9999983
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.86 E-value=0.14 Score=39.33 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=75.4
Q ss_pred CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295 70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL 149 (240)
Q Consensus 70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 149 (240)
++.|+.|..+| +.+++..... ....... ...|..+...| .-+.+++-+ |+.+.++++...........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~------~~~~i~~--~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPS------KPTRILK--LSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCc------cceeEee--cceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 78899998888 8888883221 2222222 12388998887 655555444 59999999876322211100
Q ss_pred Eeeeec--ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-ceeEeeecCCCCC
Q 026295 150 QAEFQN--AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-LPVAELALPEDRS 226 (240)
Q Consensus 150 ~~~~~~--~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-~~~~~~~~~~~h~ 226 (240)
...-+. ....+... .. +..|...........|+++.. ++|.||........+ ....++...
T Consensus 75 ~~~~~~~~~~~~~~~~--~~----v~~f~~~~~~~~~~~L~va~k------k~i~i~~~~~~~~~f~~~~ke~~lp---- 138 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPET--KG----VSFFAVNGGHEGSRRLCVAVK------KKILIYEWNDPRNSFSKLLKEISLP---- 138 (275)
T ss_pred cccccccccccccccc--CC----eeEEeeccccccceEEEEEEC------CEEEEEEEECCcccccceeEEEEcC----
Confidence 000000 00000000 01 223331111122335555554 899999998865555 566666644
Q ss_pred CceEEEEEecC
Q 026295 227 DEVYAVAWALN 237 (240)
Q Consensus 227 ~~v~~v~~sp~ 237 (240)
..+.+++|.++
T Consensus 139 ~~~~~i~~~~~ 149 (275)
T PF00780_consen 139 DPPSSIAFLGN 149 (275)
T ss_pred CCcEEEEEeCC
Confidence 37899999854
No 353
>PHA02713 hypothetical protein; Provisional
Probab=96.79 E-value=0.029 Score=47.68 Aligned_cols=155 Identities=10% Similarity=0.129 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--------------
Q 026295 20 CGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-------------- 80 (240)
Q Consensus 20 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-------------- 80 (240)
+|+..+.|+.++ .+..||.... +|..+..+.........+.. + +.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~~r~~~~~~~~--~--g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPIALSSYGMCVL--D--QYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCcccccccEEEE--C--CEEEEEeCCCccccccccccccccc
Confidence 566777777654 3778888744 67665554422222222222 3 66666676542
Q ss_pred ---------eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC------cEEEEEecCccccc
Q 026295 81 ---------SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG------HVKVYELLDPLILK 145 (240)
Q Consensus 81 ---------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v~iw~~~~~~~~~ 145 (240)
.+..||... ..|..+..+.........+.+ ++.+.+.|+.++ .|..||..+. .
T Consensus 424 ~~~~~~~~~~ve~YDP~t-----d~W~~v~~m~~~r~~~~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---~ 491 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVN-----NIWETLPNFWTGTIRPGVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNTY---N 491 (557)
T ss_pred ccccccccceEEEECCCC-----CeEeecCCCCcccccCcEEEE----CCEEEEEeCCCCCCccceeEEEecCCCC---C
Confidence 355666654 467766666543333323333 677777777542 3567877641 1
Q ss_pred ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEEEeecCCCCcceeE
Q 026295 146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVWEFDEAHNRWLPVA 217 (240)
Q Consensus 146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw~~~~~~~~~~~~~ 217 (240)
+|..+..+........ .+.. ++ .+.++|+.+ + .+-.||..+.+ |....
T Consensus 492 ~W~~~~~m~~~r~~~~----------~~~~--~~-----~iyv~Gg~~-----~~~~~e~yd~~~~~--W~~~~ 541 (557)
T PHA02713 492 GWELITTTESRLSALH----------TILH--DN-----TIMMLHCYE-----SYMLQDTFNVYTYE--WNHIC 541 (557)
T ss_pred CeeEccccCcccccce----------eEEE--CC-----EEEEEeeec-----ceeehhhcCccccc--ccchh
Confidence 3766555433222111 2222 22 278888887 6 67778877654 66543
No 354
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.74 E-value=0.081 Score=44.12 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=78.8
Q ss_pred ccEEEEEEcCCCCCCEEE-EEe--cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec--CCCcEEEEEeCCC
Q 026295 57 GAILKVVWVPPEFGDAVA-CIC--SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS--STSLKLVAAYSDG 131 (240)
Q Consensus 57 ~~v~~~~~~~~~~~~~l~-s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg 131 (240)
.+++.++| -+ |+.++ +.- .+|.+++=|- ..+..|. .|..+.|.|. .+..-+++.-...
T Consensus 20 HPvhGlaW-TD--GkqVvLT~L~l~~gE~kfGds----------~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAW-TD--GKQVVLTDLQLHNGEPKFGDS----------KVIGQFE----HVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEe-cC--CCEEEEEeeeeeCCccccCCc----------cEeeccc----eeeeeeecCcccCCCCceEEEeccc
Confidence 47889999 44 65543 321 2333332221 4444443 4889999983 1222355555667
Q ss_pred cEEEEEecCcc-cccceeEEeeeec-ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 132 HVKVYELLDPL-ILKNWQLQAEFQN-AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 132 ~v~iw~~~~~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
.|.||.+.... +..++-+.++-.. ..-++-+. ..-|+|... +|++-... ..--+++++..
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQ--------GCVWHPk~~-----iL~VLT~~-----dvSV~~sV~~d 144 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQ--------GCVWHPKKA-----ILTVLTAR-----DVSVLPSVHCD 144 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCC--------cccccCCCc-----eEEEEecC-----ceeEeeeeeeC
Confidence 89999987322 1122222222111 11122111 346999987 77776665 34455677665
Q ss_pred CCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295 210 HNRWLPVAELALPEDRSDEVYAVAWALNIGR 240 (240)
Q Consensus 210 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 240 (240)
..+- ...+. -++-|.|.+|-+||.|
T Consensus 145 ~srV--kaDi~----~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 145 SSRV--KADIK----TSGLIHCACWTKDGQR 169 (671)
T ss_pred CceE--EEecc----CCceEEEEEecCcCCE
Confidence 5432 22333 3348999999999987
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.0071 Score=44.02 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC-CCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP-EFGDAVACICSDGSLLLWEEIVEDAQPLQWKL 99 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 99 (240)
+..+++|+.+|.|.+|+....+ .....+..-...|- +-+ |. ..+.+..+++.|+.|+.|++... +.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g----~~~d~~~s~~e~i~-~~I-p~~~~~~~~c~~~~dg~ir~~n~~p~-------k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG----AHSDRVCSGEESID-LGI-PNGRDSSLGCVGAQDGRIRACNIKPN-------KV 136 (238)
T ss_pred CceEEeecccceEEEecCCccc----hHHHhhhcccccce-ecc-ccccccceeEEeccCCceeeeccccC-------ce
Confidence 4578999999999999876321 11111111112222 222 22 12557888999999999998654 43
Q ss_pred EEEeeecc-ccEEeEEEeecCCCcEEEEE--eCCCcEEEEEec
Q 026295 100 CKSFESTS-TQVLDVQFGVSSTSLKLVAA--YSDGHVKVYELL 139 (240)
Q Consensus 100 ~~~~~~~~-~~v~~~~~~~~~~~~~l~~~--~~dg~v~iw~~~ 139 (240)
+.....|. ..+.....+. .+.+++.+ +.|..++.|++.
T Consensus 137 ~g~~g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 137 LGYVGQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeeeccccCCCcceeEEec--CCceEEeeccccchhhhhcchh
Confidence 33333333 2222222222 34444444 455555555554
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.70 E-value=0.066 Score=45.35 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=54.0
Q ss_pred CccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeeccCC-----CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295 56 AGAILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 56 ~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
......+.++|+ |++++.++ .+.+|.+.|+...... ..+-....+..- ...-...+|.+ +|....+-..
T Consensus 320 GKsPHGV~vSPD--GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg--~G~aytslf~ 394 (635)
T PRK02888 320 PKNPHGVNTSPD--GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFL 394 (635)
T ss_pred CCCccceEECCC--CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC--CCCEEEeEee
Confidence 345678999999 98877655 4889999999764210 000012223322 23445678977 8888888889
Q ss_pred CCcEEEEEecC
Q 026295 130 DGHVKVYELLD 140 (240)
Q Consensus 130 dg~v~iw~~~~ 140 (240)
|.+|..|++.+
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 99999999875
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.089 Score=43.28 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-----EEEecCCeEEEEEeeeccCCCcccE
Q 026295 24 LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-----ACICSDGSLLLWEEIVEDAQPLQWK 98 (240)
Q Consensus 24 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~d~~v~iwd~~~~~~~~~~~~ 98 (240)
|.++.....++-.|+. .++.+..++.+.. |.-+.+.|+..+.++ +.|-.|..|.-||.+........|.
T Consensus 349 l~~~~~~~~l~klDIE-----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIE-----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred eeCCCCcCcceeeecc-----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3334444455555666 7788888887765 777888887433333 3455688899999886532111122
Q ss_pred EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
.-..+.. .....|. ....+| ++++|+.+|.|++||-.
T Consensus 423 q~kqy~~-k~nFsc~--aTT~sG-~IvvgS~~GdIRLYdri 459 (644)
T KOG2395|consen 423 QSKQYST-KNNFSCF--ATTESG-YIVVGSLKGDIRLYDRI 459 (644)
T ss_pred ecccccc-cccccee--eecCCc-eEEEeecCCcEEeehhh
Confidence 2222221 1222232 223344 59999999999999974
No 358
>PHA03098 kelch-like protein; Provisional
Probab=96.56 E-value=0.13 Score=43.63 Aligned_cols=162 Identities=9% Similarity=0.042 Sum_probs=80.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC------CeEEEEEee
Q 026295 20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD------GSLLLWEEI 88 (240)
Q Consensus 20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~ 88 (240)
+++..+.|+.+ ..+..||.... +|.....+....... +++. .+ +.+.+.|+.+ ..+..||..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~~r~~~-~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIFPRYNP-CVVN-VN--NLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCcCCccc-eEEE-EC--CEEEEECCcCCCCcccceEEEEeCC
Confidence 56677777765 34667777643 566544443211111 2222 23 5666666632 356778875
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC--------cEEEEEecCcccccceeEEeeeeccccee
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG--------HVKVYELLDPLILKNWQLQAEFQNAIDSV 160 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v 160 (240)
+ ..|..+..+.........+. . ++.+++.|+.++ .+.+||..+ .+|..+..+....
T Consensus 415 t-----~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~r--- 478 (534)
T PHA03098 415 T-----NKWSKGSPLPISHYGGCAIY--H--DGKIYVIGGISYIDNIKVYNIVESYNPVT----NKWTELSSLNFPR--- 478 (534)
T ss_pred C-----CeeeecCCCCccccCceEEE--E--CCEEEEECCccCCCCCcccceEEEecCCC----CceeeCCCCCccc---
Confidence 4 35666554443222222222 2 566667666432 377888765 3355443221110
Q ss_pred eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295 161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA 220 (240)
Q Consensus 161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~ 220 (240)
..+ ..+.+ ++. +++.|+.++....+.|.+||..+. .|.....++
T Consensus 479 -----~~~--~~~~~--~~~-----iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p 522 (534)
T PHA03098 479 -----INA--SLCIF--NNK-----IYVVGGDKYEYYINEIEVYDDKTN--TWTLFCKFP 522 (534)
T ss_pred -----ccc--eEEEE--CCE-----EEEEcCCcCCcccceeEEEeCCCC--EEEecCCCc
Confidence 000 02222 332 677777642222257788876654 476655444
No 359
>PHA02713 hypothetical protein; Provisional
Probab=96.53 E-value=0.1 Score=44.46 Aligned_cols=95 Identities=6% Similarity=-0.040 Sum_probs=53.0
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEee
Q 026295 20 CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEI 88 (240)
Q Consensus 20 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~ 88 (240)
++...+.|+.+ ..+..||...+ .|..+..+........... -+ +.+.+.|+.++ .+..||..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~~~R~~~~~~~--~~--g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMIKNRCRFSLAV--ID--DTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCcchhhceeEEE--EC--CEEEEECCcCCCCCCceEEEEECC
Confidence 55666777653 23667777643 5655544432122222222 23 66777777654 47778876
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
. ..|..+..+.........+.+ ++.+.+.|+.+
T Consensus 376 ~-----~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~ 408 (557)
T PHA02713 376 D-----DKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRT 408 (557)
T ss_pred C-----CeEEECCCCCcccccccEEEE----CCEEEEEeCCC
Confidence 5 467776666544333333333 67777778765
No 360
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.50 E-value=0.14 Score=37.89 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=74.5
Q ss_pred ceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCC
Q 026295 11 GTTSSSWNYCGQRLATGSTD---------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDG 80 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~ 80 (240)
+.+.-..+|+|++++-...| |.++.|-... .+..+...-+--+.+.|+.+ .+.+ ..-+.+-
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~~~v~IsNgl~Wd~d--~K~fY~iDsln~ 180 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------QVELIWNCVGISNGLAWDSD--AKKFYYIDSLNY 180 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCC-------CceeeehhccCCcccccccc--CcEEEEEccCce
Confidence 45556678999885544333 2233332221 11111111223357888766 4444 4445566
Q ss_pred eEEEEEeeeccCCCcccEEEEEeee----ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFES----TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
+|.-||..-..+....-+.+..++. ....-..+++.- .|.+.+++-..++|...|+.+ ++...++.-.
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~~V~~~dp~t------GK~L~eiklP 252 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGGTVQKVDPTT------GKILLEIKLP 252 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCcEEEEECCCC------CcEEEEEEcC
Confidence 8888885433332122233333332 112223455655 788778888888999999988 7888888777
Q ss_pred cceee
Q 026295 157 IDSVT 161 (240)
Q Consensus 157 ~~~v~ 161 (240)
...++
T Consensus 253 t~qit 257 (310)
T KOG4499|consen 253 TPQIT 257 (310)
T ss_pred CCceE
Confidence 76666
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.49 E-value=0.16 Score=44.62 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=80.8
Q ss_pred CCCcEEEEeCCCCCCCcEEEEeEeeecCcc-EEEEEEcCCCC-----CCEEEEEecCCeEEEEEeeeccCCCcccEEEE-
Q 026295 29 TDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-ILKVVWVPPEF-----GDAVACICSDGSLLLWEEIVEDAQPLQWKLCK- 101 (240)
Q Consensus 29 ~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~- 101 (240)
....|+-.|+. .++.+..++.|... |.. +.|+.. ....+.|-.+..+..||.+.... +++.
T Consensus 502 ~~~~ly~mDLe-----~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-----k~v~~ 569 (794)
T PF08553_consen 502 NPNKLYKMDLE-----RGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-----KLVDS 569 (794)
T ss_pred CCCceEEEecC-----CCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCC-----ceeec
Confidence 44667777777 77888888877643 444 445311 23445666788899999986421 2221
Q ss_pred Eee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295 102 SFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179 (240)
Q Consensus 102 ~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~ 179 (240)
... .......+++=.. +|. ||+|+.+|.||+||-.. ......|.+...+|. .|.-+.+|
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~--~G~-iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~----------~iDvt~DG 630 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTE--DGY-IAVGSNKGDIRLYDRLG------KRAKTALPGLGDPII----------GIDVTADG 630 (794)
T ss_pred cccccccCCCceEEEecC--Cce-EEEEeCCCcEEeecccc------hhhhhcCCCCCCCee----------EEEecCCC
Confidence 111 1223445555433 555 99999999999999432 111222333344454 78888888
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
. .+||| ++ ..+.+++..
T Consensus 631 k----wilaT--c~-----tyLlLi~t~ 647 (794)
T PF08553_consen 631 K----WILAT--CK-----TYLLLIDTL 647 (794)
T ss_pred c----EEEEe--ec-----ceEEEEEEe
Confidence 5 23333 34 678888763
No 362
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=96.44 E-value=0.043 Score=39.01 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=32.3
Q ss_pred eeeeEEEeCCCCC-CCCceEEEEecCCCCCCCeEEEEEeecC-CCCccee
Q 026295 169 ISASISWNPQKGE-NQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPV 216 (240)
Q Consensus 169 ~~~~v~~~p~~~~-~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~ 216 (240)
.+..++|+|.|.. +.+.+||+-..+ +.|.||..... ...|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~-----~~l~l~~~~~~~~~~W~~v 131 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSN-----GRLSLYGPPGNPQGEWNRV 131 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCC-----CeEEEEecCCCccccEeee
Confidence 4458899998765 447789999998 99999997754 5555543
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.16 Score=43.53 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=60.3
Q ss_pred ceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-CeEE
Q 026295 11 GTTSSSWNYCGQRLATGS------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-GSLL 83 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~ 83 (240)
.+...+++|+|+++|... .|..-.||-....+ ..+.+ +.+ .....-.|+|+ |..+++.... ..++
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~l--t~g--~~~t~PsWspD--G~~lw~v~dg~~~~~ 422 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQV--LEG--HSLTRPSWSLD--ADAVWVVVDGNTVVR 422 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceee--ecC--CCCCCceECCC--CCceEEEecCcceEE
Confidence 567889999999887765 24443444332111 11222 223 23778899998 8877766432 1222
Q ss_pred EE-----------EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 84 LW-----------EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 84 iw-----------d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
+. ++..+ .... .....|..+.|+| +|..++... +|+|.+-
T Consensus 423 v~~~~~~gql~~~~vd~g-------e~~~---~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 423 VIRDPATGQLARTPVDAS-------AVAS---RVPGPISELQLSR--DGVRAAMII-GGKVYLA 473 (591)
T ss_pred EeccCCCceEEEEeccCc-------hhhh---ccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence 22 22111 1101 2245799999999 999887766 4777663
No 364
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.31 E-value=0.15 Score=41.87 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=58.9
Q ss_pred EEEEECCCCCEEEEE-eCCCcEEEE--eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCCeEEEEEee
Q 026295 13 TSSSWNYCGQRLATG-STDGTLSIF--DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDGSLLLWEEI 88 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~-~~d~~i~iw--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~ 88 (240)
..-+|+|||++|+-+ ..||...|| |+... . ...+..-.+.-..=.|+|+ |+.++-. +..|.-.||-..
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~-----~-~~~Lt~~~gi~~~Ps~spd--G~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK-----N-LPRLTNGFGINTSPSWSPD--GSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCC-----c-ceecccCCccccCccCCCC--CCEEEEEeCCCCCcceEEEC
Confidence 345899999876655 456665555 55432 1 2222222222236678999 8877654 445554454443
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-Cc--EEEEEecC
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GH--VKVYELLD 140 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~--v~iw~~~~ 140 (240)
.... .. ..+......-..-.|+| +|.+++..+.. |. |.+.++.+
T Consensus 313 ~~g~-----~~-~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 313 LEGS-----QV-TRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCC-----ce-eEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCC
Confidence 2211 22 22221112222677888 99988877743 44 44444443
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.21 E-value=0.54 Score=38.50 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=47.1
Q ss_pred EEEECCCCCEEEEEeCC-----------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 14 SSSWNYCGQRLATGSTD-----------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.++.+|.|..+|....+ ..|+||+..+ +++.++.-..+.+.++.|+.+ ..|+....||.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG------~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v 103 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG------KLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTV 103 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC------CEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEE
Confidence 35667777777777554 1488888764 345554433378999999775 456666789999
Q ss_pred EEEEeee
Q 026295 83 LLWEEIV 89 (240)
Q Consensus 83 ~iwd~~~ 89 (240)
++||+..
T Consensus 104 ~vy~~~G 110 (410)
T PF04841_consen 104 RVYDLFG 110 (410)
T ss_pred EEEeCCC
Confidence 9999864
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.19 E-value=0.4 Score=36.75 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=85.8
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCccc
Q 026295 18 NYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQW 97 (240)
Q Consensus 18 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 97 (240)
...+++|+.|..+| +.+++.... .......+ ...|..+...+. -+.++.-+ |+.+.++++..........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~----~~~~~i~~--~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDP----SKPTRILK--LSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCC----ccceeEee--cceEEEEEEecc--cCEEEEEc-CCccEEEEchhhccccccc
Confidence 34678999999998 889988322 12222222 233999999887 55555543 6999999987653211000
Q ss_pred EEEE-------EeeeccccEEeEE-EeecCCCcEEEEEeCCCcEEEEEecCcccccce-eEEeeeecccceeeccccccc
Q 026295 98 KLCK-------SFESTSTQVLDVQ-FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNW-QLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 98 ~~~~-------~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 168 (240)
.... ........+...+ -.......+|+++. ..+|.+|....+.. .+ ....++... ..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~--~f~~~~ke~~lp-~~~~------- 142 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRN--SFSKLLKEISLP-DPPS------- 142 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcc--cccceeEEEEcC-CCcE-------
Confidence 0000 0011223344443 11222334444444 45899999875311 13 344444433 2223
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
+++|..+ .+++|.. +...+.|+.++.
T Consensus 143 ---~i~~~~~-------~i~v~~~------~~f~~idl~~~~ 168 (275)
T PF00780_consen 143 ---SIAFLGN-------KICVGTS------KGFYLIDLNTGS 168 (275)
T ss_pred ---EEEEeCC-------EEEEEeC------CceEEEecCCCC
Confidence 7888843 5777775 568888887543
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.54 Score=36.04 Aligned_cols=183 Identities=8% Similarity=-0.007 Sum_probs=100.0
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDGS 81 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~ 81 (240)
+++.+....|.++.|+|+.+.|++......--|+=-. +++.+.++.-. -...-.|.|..+ +++.++-=.+..
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-----~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~ 151 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-----EGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRA 151 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEec-----CCceEEEecccccCChhHeEEecC--CEEEEEehhcce
Confidence 3466666679999999999888777766665555433 44556555410 122335677666 666666666777
Q ss_pred EEEEEeeeccCC--Cccc-EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295 82 LLLWEEIVEDAQ--PLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID 158 (240)
Q Consensus 82 v~iwd~~~~~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
+.++.+...... .... -++..........-.++|+| ....|..+=...-+.||............... .+..
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~---~~~~ 226 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHASL---DPTA 226 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCccccccccc---Cccc
Confidence 877776543210 0000 01111112245677899998 66667777777778888876422111111000 0000
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
. . .-..-.+..+.|++.... +|+.+..+ +.+.-.|....
T Consensus 227 ~-~--~~f~~DvSgl~~~~~~~~----LLVLS~ES-----r~l~Evd~~G~ 265 (316)
T COG3204 227 D-R--DLFVLDVSGLEFNAITNS----LLVLSDES-----RRLLEVDLSGE 265 (316)
T ss_pred c-c--ceEeeccccceecCCCCc----EEEEecCC-----ceEEEEecCCC
Confidence 0 0 000112237778877652 55555555 77776666543
No 368
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.91 E-value=0.037 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=25.5
Q ss_pred cceEEEEECCCC---CEEEEEeCCCcEEEEeCC
Q 026295 10 KGTTSSSWNYCG---QRLATGSTDGTLSIFDSP 39 (240)
Q Consensus 10 ~~v~~~~~s~~~---~~l~~~~~d~~i~iw~~~ 39 (240)
++|++++|+|.. .+|+-+-..+.|.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 579999999844 588888888999999998
No 369
>PHA02790 Kelch-like protein; Provisional
Probab=95.91 E-value=0.36 Score=40.42 Aligned_cols=151 Identities=8% Similarity=-0.016 Sum_probs=78.1
Q ss_pred CCCCEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC---eEEEEEeeeccCC
Q 026295 19 YCGQRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG---SLLLWEEIVEDAQ 93 (240)
Q Consensus 19 ~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~ 93 (240)
-++...+.|+.+ ..+..|+...+ .|..+..+.........+. -+ |.+.+.|+.++ .+..||...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n---~W~~~~~l~~~r~~~~~~~--~~--g~IYviGG~~~~~~~ve~ydp~~---- 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDA---AWVNMPSLLKPRCNPAVAS--IN--NVIYVIGGHSETDTTTEYLLPNH---- 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCC---eEEECCCCCCCCcccEEEE--EC--CEEEEecCcCCCCccEEEEeCCC----
Confidence 356667777754 35777876533 5666555542121122222 23 66667776553 466777654
Q ss_pred CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeE
Q 026295 94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASI 173 (240)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v 173 (240)
..|.....+.........+.+ ++.+.+.|+ .+.+||..+ .+|.....+....... .+
T Consensus 386 -~~W~~~~~m~~~r~~~~~~~~----~~~IYv~GG---~~e~ydp~~----~~W~~~~~m~~~r~~~-----------~~ 442 (480)
T PHA02790 386 -DQWQFGPSTYYPHYKSCALVF----GRRLFLVGR---NAEFYCESS----NTWTLIDDPIYPRDNP-----------EL 442 (480)
T ss_pred -CEEEeCCCCCCccccceEEEE----CCEEEEECC---ceEEecCCC----CcEeEcCCCCCCcccc-----------EE
Confidence 457765555433333323333 667666664 577888865 3476554432211111 12
Q ss_pred EEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 174 SWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 174 ~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+- .++. +.++|+.+.......|..||..++
T Consensus 443 ~v-~~~~-----IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 443 II-VDNK-----LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EE-ECCE-----EEEECCcCCCcccceEEEEECCCC
Confidence 21 1222 777787642222246777776654
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.058 Score=48.25 Aligned_cols=119 Identities=18% Similarity=0.033 Sum_probs=74.5
Q ss_pred ceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCC---cEEEEeE---eeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295 11 GTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSS---SFTCNLK---TKVHAGAILKVVWVPPEFGDAVACICSDGSL 82 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~---~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v 82 (240)
.+..+...+|+...++- +.+-.|..||+..-... +..++.. ......-..++.|+|. .....+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccch
Confidence 45566667777655544 33347888998632111 1111111 1122234567889886 34556777789999
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
++..+.... .....+ .....+++++|+| .|..++.|-..|++.-|...
T Consensus 181 ~V~~~~~~~------~~v~s~-p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 181 RVKSTKQLA------QNVTSF-PVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhh------hhhccc-CcccceeeEEecc--ccceeeEecCCCeEEEeecc
Confidence 888775431 112222 2346789999999 99999999999999888754
No 371
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.81 E-value=0.82 Score=37.20 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=56.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+..+..++.+|.+..+|.. +++.+-.... .....+.. . +..++.++.++.+...|..++ +.+
T Consensus 256 ~~~vy~~~~~g~l~ald~~-----tG~~~W~~~~--~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-------~~~ 317 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLR-----SGQIVWKREY--GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-------VEL 317 (394)
T ss_pred CCEEEEEEcCCeEEEEECC-----CCCEEEeecC--CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-------cEE
Confidence 4566677778888888887 3333332221 11111111 2 556777778999999998765 222
Q ss_pred EEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 101 KSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 101 ~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
-...... ....+... .+.+++.++.+|.|.+.|..+
T Consensus 318 W~~~~~~~~~~~sp~v----~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL----YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EcccccCCCcccCCEE----ECCEEEEEeCCCEEEEEECCC
Confidence 2111111 11122222 234578889999999999877
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.81 E-value=0.89 Score=37.59 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=54.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec-------cCC
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE-------DAQ 93 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~~ 93 (240)
|.+|+..+.+ .|.+||.. +.+.+..+.. .+|..+.|+++ +.+++..+.+ .+.+++.... ++.
T Consensus 117 G~LL~~~~~~-~i~~yDw~-----~~~~i~~i~v--~~vk~V~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~ 185 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWE-----TGKLIRRIDV--SAVKYVIWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGV 185 (443)
T ss_dssp SSSEEEEETT-EEEEE-TT-----T--EEEEESS---E-EEEEE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-
T ss_pred CcEEEEECCC-CEEEEEhh-----HcceeeEEec--CCCcEEEEECC--CCEEEEEeCC-eEEEEEecchhcccccccCc
Confidence 7778777664 89999998 6678887764 34899999999 9999888755 6777776532 011
Q ss_pred CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295 94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135 (240)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 135 (240)
+..+..+. .-...|.+..|.- + .++-.+.. .++.
T Consensus 186 e~~f~~~~---E~~~~IkSg~W~~--d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 186 EDAFELIH---EISERIKSGCWVE--D--CFIYTTSN-HLKY 219 (443)
T ss_dssp GGGEEEEE---EE-S--SEEEEET--T--EEEEE-TT-EEEE
T ss_pred hhceEEEE---EecceeEEEEEEc--C--EEEEEcCC-eEEE
Confidence 11223333 2246788889953 3 55555555 7776
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.81 E-value=0.88 Score=39.13 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=72.5
Q ss_pred ccEEEEEEcCCCCCCEEEEEe------cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295 57 GAILKVVWVPPEFGDAVACIC------SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 57 ~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
..+.+.+.+|+ |+.++..- .|..-.||-...+. .......+ .....-.|+| +|..+.+....
T Consensus 350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg------~~~~lt~g--~~~t~PsWsp--DG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGG------VAVQVLEG--HSLTRPSWSL--DADAVWVVVDG 417 (591)
T ss_pred cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCC------cceeeecC--CCCCCceECC--CCCceEEEecC
Confidence 45778899999 88777654 24444555443221 11111222 2367789999 88877777543
Q ss_pred CcE-EEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-
Q 026295 131 GHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE- 208 (240)
Q Consensus 131 g~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~- 208 (240)
..+ ++.+.... .++. .+......... .....+..+.|+|++. .++.-. + +.|++=-+..
T Consensus 418 ~~~~~v~~~~~~-----gql~-~~~vd~ge~~~--~~~g~Issl~wSpDG~-----RiA~i~-~-----g~v~Va~Vvr~ 478 (591)
T PRK13616 418 NTVVRVIRDPAT-----GQLA-RTPVDASAVAS--RVPGPISELQLSRDGV-----RAAMII-G-----GKVYLAVVEQT 478 (591)
T ss_pred cceEEEeccCCC-----ceEE-EEeccCchhhh--ccCCCcCeEEECCCCC-----EEEEEE-C-----CEEEEEEEEeC
Confidence 232 22221110 1110 00000000000 0011233899999998 555554 3 7777743322
Q ss_pred CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295 209 AHNRWLPVAELALPEDRSDEVYAVAWALNI 238 (240)
Q Consensus 209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 238 (240)
......+........+-...+.+++|.+++
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCC
Confidence 111222211111111233346889998876
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.82 Score=37.08 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred EEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---CCeEEEEEee
Q 026295 13 TSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---DGSLLLWEEI 88 (240)
Q Consensus 13 ~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~ 88 (240)
..+++++.++ ..++...+..|.+.|.. +.+....... ......+.++++ +..+..+.. ++++.+.|..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~-----~~~~~~~~~v-G~~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTA-----TNTVLGSIPV-GLGPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCc-----ccceeeEeee-ccCCceEEECCC--CCEEEEEecccCCceEEEEeCC
Confidence 3567888887 44455556899999965 3334443332 225668999998 766666554 5677777776
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecC
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLD 140 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~ 140 (240)
.. ...........+ ..++++| +|.++.... .++.|.+.|...
T Consensus 149 t~-------~~~~~~~vG~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 149 TN-------KVTATIPVGNTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CC-------eEEEEEecCCCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence 55 555554433234 7899999 888665555 788999999765
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.75 E-value=0.81 Score=36.72 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=43.3
Q ss_pred EECCCCCEE-EEEeCCCcEEEE--eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295 16 SWNYCGQRL-ATGSTDGTLSIF--DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 16 ~~s~~~~~l-~~~~~d~~i~iw--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 92 (240)
+|.++|++| +.+..||.-.+| |+. +.+..+...+-........++++ .+.++-......|+--|+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~-----t~~i~QLTdg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~-- 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA-----TGEITQLTDGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTL-- 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT-----T-EEEE---SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT---
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc-----cCEEEECccCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcC--
Confidence 677888654 445556655554 555 44444333321122335666677 666655444567777777765
Q ss_pred CCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295 93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL 124 (240)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 124 (240)
+....+.-....+-...|..+.++..+
T Consensus 113 -----e~~~vy~~p~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 113 -----EERVVYEVPDDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp ------EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred -----cEEEEEECCcccccccceeeCCCccEE
Confidence 333333334455555677654456544
No 376
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.63 E-value=0.49 Score=38.46 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=57.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEE------EEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295 20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAIL------KVVWVPPEFGDAVACICSDGSLLLWEEIVEDA 92 (240)
Q Consensus 20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~------~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 92 (240)
.+.++.+++.++.+.-+|.. +++.+-...... .... .+.-.|...+..++.++.++.+..+|..++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~- 141 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDAD-----TGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGE- 141 (394)
T ss_pred ECCEEEEECCCCeEEEEECC-----CCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCC-
Confidence 45677778888888888887 444444332111 0000 0000111114556777788999999987662
Q ss_pred CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
..|+ .+........... .+..++.++.++.+.-+|..+.
T Consensus 142 --~~W~----~~~~~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 142 --VAWQ----TKVAGEALSRPVV----SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred --Cccc----ccCCCceecCCEE----ECCEEEEECCCCEEEEEEccCC
Confidence 2233 2221111111112 2334667778899999998873
No 377
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.59 E-value=1.2 Score=37.58 Aligned_cols=125 Identities=10% Similarity=0.143 Sum_probs=68.5
Q ss_pred CccEEEEEEcCCCC---CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-ccc--EEeEEEeecCCCcEEEEEeC
Q 026295 56 AGAILKVVWVPPEF---GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQ--VLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 56 ~~~v~~~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~~~l~~~~~ 129 (240)
-..|+.+.|.|... ..+||. -....|.+|.+.....+...|..-++..-. .-+ -....|+| ....|++-+.
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~ 132 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA 132 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence 34588999998721 134544 456789999987443333334433333211 111 24567999 7776666555
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
...-.+++.+.+. -.....+ ...+.|. |.+|.+++. +..+|+|+. =.-+|||-.
T Consensus 133 ~dvSV~~sV~~d~----srVkaDi-~~~G~Ih----------CACWT~DG~---RLVVAvGSs------LHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDS----SRVKADI-KTSGLIH----------CACWTKDGQ---RLVVAVGSS------LHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCC----ceEEEec-cCCceEE----------EEEecCcCC---EEEEEeCCe------EEEEEecCc
Confidence 4433456665421 1222233 2233444 899999987 333344443 467778753
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.49 E-value=0.94 Score=35.69 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 21 GQRLATGST----------DGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 21 ~~~l~~~~~----------d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
..+|+.|.. .|.|.+|++..... ...+.+.... ..++|++++-. . +.++++. ...|.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~--~~lv~~~--g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-N--GRLVVAV--GNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-T--TEEEEEE--TTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-C--CEEEEee--cCEEEEEEcc
Confidence 467877753 28899999985210 1233343333 47889999865 3 4544443 5799999998
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC 168 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 168 (240)
... .+.....+... ..+.++.. .+.++++|.....+.++..+.. ..+...+.. ......+.
T Consensus 116 ~~~----~l~~~~~~~~~-~~i~sl~~----~~~~I~vgD~~~sv~~~~~~~~--~~~l~~va~-d~~~~~v~------- 176 (321)
T PF03178_consen 116 NSK----TLLKKAFYDSP-FYITSLSV----FKNYILVGDAMKSVSLLRYDEE--NNKLILVAR-DYQPRWVT------- 176 (321)
T ss_dssp TTS----SEEEEEEE-BS-SSEEEEEE----ETTEEEEEESSSSEEEEEEETT--TE-EEEEEE-ESS-BEEE-------
T ss_pred Ccc----cchhhheecce-EEEEEEec----cccEEEEEEcccCEEEEEEEcc--CCEEEEEEe-cCCCccEE-------
Confidence 752 12333333332 35555554 4558999998888998876541 011122111 11122233
Q ss_pred eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
++.+-++.. .++++..+ |.+.++....
T Consensus 177 ---~~~~l~d~~-----~~i~~D~~-----gnl~~l~~~~ 203 (321)
T PF03178_consen 177 ---AAEFLVDED-----TIIVGDKD-----GNLFVLRYNP 203 (321)
T ss_dssp ---EEEEE-SSS-----EEEEEETT-----SEEEEEEE-S
T ss_pred ---EEEEecCCc-----EEEEEcCC-----CeEEEEEECC
Confidence 677776554 68888887 9999999874
No 379
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.45 E-value=1.6 Score=38.46 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc-ccccceeE-Eeeeecccceeec---cccccceeeeEEEeCCCCC
Q 026295 107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP-LILKNWQL-QAEFQNAIDSVTM---FRKASCISASISWNPQKGE 181 (240)
Q Consensus 107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~-~~~~~~~~~~v~~---~~~~~~~~~~v~~~p~~~~ 181 (240)
.-.|..|.++| +|.+++..+..| |.|-.+... ......+. ...+.....++.. ..+....+..+.|+|.+..
T Consensus 84 ~f~v~~i~~n~--~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNP--TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECC--CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 35688899988 999999888866 444444321 10000000 0011111111100 0111224458899998642
Q ss_pred CCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295 182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW 213 (240)
Q Consensus 182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~ 213 (240)
+..|++=.+| +++|+||+......+
T Consensus 161 --~~~l~vLtsd-----n~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 161 --DSHLVVLTSD-----NTLRLYDISDPQHPW 185 (717)
T ss_pred --CCeEEEEecC-----CEEEEEecCCCCCCe
Confidence 3478888888 999999997654443
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.40 E-value=0.88 Score=37.25 Aligned_cols=113 Identities=20% Similarity=0.137 Sum_probs=62.0
Q ss_pred eEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCC-----
Q 026295 12 TTSSSWNYCGQRLATG-STDG----TLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDG----- 80 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----- 80 (240)
+...+++|+|+++|-+ +..| .++++|+. +++.+.. +.. .....+.|.++ ++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~-----tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE-----TGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT-----TTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC-----CCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccc
Confidence 3367899999988866 3434 49999998 4444432 222 11223999998 77766554333
Q ss_pred ------eEEEEEeeeccCCCcccEEEEEeeeccc--cEEeEEEeecCCCcEEEEEe-CC---CcEEEEEecC
Q 026295 81 ------SLLLWEEIVEDAQPLQWKLCKSFESTST--QVLDVQFGVSSTSLKLVAAY-SD---GHVKVYELLD 140 (240)
Q Consensus 81 ------~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~-~d---g~v~iw~~~~ 140 (240)
.|..|.+-+... .-...+..... ....+..++ ++++++... .. ..+.+.++..
T Consensus 197 ~~~~~~~v~~~~~gt~~~-----~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQS-----EDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp CCGCCEEEEEEETTS-GG-----G-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cCCCCcEEEEEECCCChH-----hCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccc
Confidence 256666533211 21223333222 245677777 888766543 22 2366666654
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=95.28 E-value=1.2 Score=35.48 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=63.0
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEE-EeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSI-FDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~i-w~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
+.+..+.+.+++.+++++.. |.+.. ++-.. .+++.+.. .-...++.+.+.++ +..++.+ ..|.+.+-...
T Consensus 173 g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg---~tW~~~~~--~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQ---TAWTPHQR--NSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC-ceEEEEcCCCC---CeEEEeeC--CCcccceeeeEcCC--CCEEEEe-cCCEEEEccCC
Confidence 46888999998877766654 65432 22111 14655432 23467889999888 7766654 56766432222
Q ss_pred eccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295 89 VEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 134 (240)
. +..|+.+..- ......+..+.+.| ++. +..++.+|.|.
T Consensus 244 ~----G~sW~~~~~~~~~~~~~l~~v~~~~--~~~-~~~~G~~G~v~ 283 (334)
T PRK13684 244 D----LESWSKPIIPEITNGYGYLDLAYRT--PGE-IWAGGGNGTLL 283 (334)
T ss_pred C----CCccccccCCccccccceeeEEEcC--CCC-EEEEcCCCeEE
Confidence 2 2556643221 11234577888887 776 44555677554
No 382
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.21 E-value=0.96 Score=34.14 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295 20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK 98 (240)
Q Consensus 20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 98 (240)
-|++++.|...|.+++.+.. ++.....+..- +.|. .....++ +.++..++.|+.....|.+.. .
T Consensus 62 vgdfVV~GCy~g~lYfl~~~-----tGs~~w~f~~~-~~vk~~a~~d~~--~glIycgshd~~~yalD~~~~-------~ 126 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVK-----TGSQIWNFVIL-ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKTY-------G 126 (354)
T ss_pred ECCEEEEEEccCcEEEEEec-----chhheeeeeeh-hhhccceEEcCC--CceEEEecCCCcEEEeccccc-------c
Confidence 46688889999999988887 66556655542 2232 2334466 889999999999999998765 5
Q ss_pred EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295 99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK 134 (240)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 134 (240)
++...+.......+-+..| ....|..+...|.|.
T Consensus 127 cVykskcgG~~f~sP~i~~--g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 127 CVYKSKCGGGTFVSPVIAP--GDGSLYAAITAGAVL 160 (354)
T ss_pred eEEecccCCceeccceecC--CCceEEEEeccceEE
Confidence 6665543323223333443 222244444445443
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.1 Score=34.43 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=45.3
Q ss_pred EECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295 16 SWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 16 ~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 77 (240)
.|||||.+|...-.| |.|-|||... ..+.+..+..|.-.-..+.|.++ |..++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~----~fqrvgE~~t~GiGpHev~lm~D--Grtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE----GFQRVGEFSTHGIGPHEVTLMAD--GRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc----ccceecccccCCcCcceeEEecC--CcEEEEeC
Confidence 589999988877554 6799999974 45667788888888889999999 99888763
No 384
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.15 E-value=2.1 Score=37.74 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=52.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-C--------CCcEEEEeEe--------eecCccEEEEEEcCCC-CCCE
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-S--------SSSFTCNLKT--------KVHAGAILKVVWVPPE-FGDA 72 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~--------~~~~~~~~~~--------~~h~~~v~~~~~~~~~-~~~~ 72 (240)
.|..+.++|+|++||..|..|.+ |-.+... + ..+..| +++ ......|..+.|.|.. .+..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeE-EEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 68899999999999999986544 4444321 0 001111 111 1234578999999872 2467
Q ss_pred EEEEecCCeEEEEEeeec
Q 026295 73 VACICSDGSLLLWEEIVE 90 (240)
Q Consensus 73 l~s~~~d~~v~iwd~~~~ 90 (240)
|+.-..|+.+|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999653
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.12 E-value=0.33 Score=39.56 Aligned_cols=45 Identities=13% Similarity=-0.023 Sum_probs=35.9
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG 57 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~ 57 (240)
....+.+++.+|.+++.|+...-|.|.++|+. ....++.+++..+
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-----~~~vvrmWKGYRd 350 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVA-----RGIVVRMWKGYRD 350 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECC-----CChhhhhhccCcc
Confidence 34568899999999999998888999999998 5566666766544
No 386
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.26 Score=44.39 Aligned_cols=145 Identities=13% Similarity=0.105 Sum_probs=75.8
Q ss_pred cEEEEEEcCCCCCCEEEE--EecCCeEEEEEeeeccCCC-cccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295 58 AILKVVWVPPEFGDAVAC--ICSDGSLLLWEEIVEDAQP-LQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYSDG 131 (240)
Q Consensus 58 ~v~~~~~~~~~~~~~l~s--~~~d~~v~iwd~~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg 131 (240)
++..+...++ +...++ .+.+-.|..||++.-.... .+..++..- ........++.|.|..... .++...|+
T Consensus 102 pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n-~av~l~dl 178 (1405)
T KOG3630|consen 102 PIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN-SAVDLSDL 178 (1405)
T ss_pred cceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch-hhhhcccc
Confidence 3444555566 543333 3333478889986532110 001111111 1122344678888743333 56777889
Q ss_pred cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295 132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~ 211 (240)
.|++..+... ...+..+. ......+++|+|.+. -+++|... |++.-|...-...
T Consensus 179 sl~V~~~~~~-----~~~v~s~p-----------~t~~~Tav~WSprGK-----Ql~iG~nn-----Gt~vQy~P~leik 232 (1405)
T KOG3630|consen 179 SLRVKSTKQL-----AQNVTSFP-----------VTNSQTAVLWSPRGK-----QLFIGRNN-----GTEVQYEPSLEIK 232 (1405)
T ss_pred chhhhhhhhh-----hhhhcccC-----------cccceeeEEeccccc-----eeeEecCC-----CeEEEeeccccee
Confidence 9988876541 11111111 111223899999998 68999988 9999988654321
Q ss_pred CcceeEeeecCCCCCCceEEEEEe
Q 026295 212 RWLPVAELALPEDRSDEVYAVAWA 235 (240)
Q Consensus 212 ~~~~~~~~~~~~~h~~~v~~v~~s 235 (240)
...... +..+ ...|.+|+|-
T Consensus 233 ~~ip~P--p~~e--~yrvl~v~Wl 252 (1405)
T KOG3630|consen 233 SEIPEP--PVEE--NYRVLSVTWL 252 (1405)
T ss_pred ecccCC--CcCC--CcceeEEEEe
Confidence 111111 1111 2378888884
No 387
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.02 E-value=1.4 Score=34.80 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=71.9
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
.+++|++++-- .+ +|+.+.. +.|.+|++.... .......+..+ ..+.++.. . +++++.|.....+.++.+
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~--~l~~~~~~~~~-~~i~sl~~--~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSK--TLLKKAFYDSP-FYITSLSV--F--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTS--SEEEEEEE-BS-SSEEEEEE--E--TTEEEEEESSSSEEEEEE
T ss_pred ecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcc--cchhhheecce-EEEEEEec--c--ccEEEEEEcccCEEEEEE
Confidence 46788888644 34 4555554 799999998652 24444444332 35555554 3 678889988888888876
Q ss_pred eeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 88 IVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
+... ..+..+. .....+.++.|-+ ++..++.+..+|.+.++...
T Consensus 157 ~~~~------~~l~~va~d~~~~~v~~~~~l~--d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEEN------NKLILVARDYQPRWVTAAEFLV--DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTT------E-EEEEEEESS-BEEEEEEEE---SSSEEEEEETTSEEEEEEE-
T ss_pred EccC------CEEEEEEecCCCccEEEEEEec--CCcEEEEEcCCCeEEEEEEC
Confidence 5421 2222222 2356688888886 55689999999999999886
No 388
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.64 Score=37.95 Aligned_cols=124 Identities=6% Similarity=0.037 Sum_probs=69.6
Q ss_pred cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295 78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI 157 (240)
Q Consensus 78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 157 (240)
..|.+.-|....... . .++.--...++.|.++.|++ |.+.+|+...+.+|.+++...++.. .+..++-+...
T Consensus 41 rSggatgvvvkgpnd---D-VpiSfdm~d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~--l~~~~~ck~k~ 112 (657)
T KOG2377|consen 41 RSGGATGVVVKGPND---D-VPISFDMDDKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQ--LEYTQECKTKN 112 (657)
T ss_pred ecCCeeEEEEeCCCC---C-CCceeeecCCCceeEEEecc--CcceEEEEecCceEEEEecCCCchh--hHHHHHhccCc
Confidence 345566676654322 1 12222223457999999999 9999999999999999998542211 11111112222
Q ss_pred ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
..|. ...|..+.. +|.-.. .-+-+|......+...+++ .|...|+-..|.|+
T Consensus 113 ~~Il----------GF~W~~s~e------~A~i~~------~G~e~y~v~pekrslRlVk------s~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 113 ANIL----------GFCWTSSTE------IAFITD------QGIEFYQVLPEKRSLRLVK------SHNLNVNWYMYCPE 164 (657)
T ss_pred ceeE----------EEEEecCee------EEEEec------CCeEEEEEchhhhhhhhhh------hcccCccEEEEccc
Confidence 2233 677887754 555554 4577777765543333322 23335555555554
No 389
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.92 E-value=1.2 Score=33.69 Aligned_cols=132 Identities=8% Similarity=0.079 Sum_probs=71.5
Q ss_pred EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeC
Q 026295 51 KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 51 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
.+.+-...+..|+|.|+ .+.++++....+.|...+.+ + +.++.+.-. ....-.|++.- ++.++++--.
T Consensus 16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G-------~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er 84 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-G-------KVLRRIPLDGFGDYEGITYLG--NGRYVLSEER 84 (248)
T ss_dssp E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEETT----------EEEEEE-SS-SSEEEEEE-S--TTEEEEEETT
T ss_pred ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcCC-C-------CEEEEEeCCCCCCceeEEEEC--CCEEEEEEcC
Confidence 34444556999999997 24566677777777766654 2 666666532 35677888865 7776666656
Q ss_pred CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
++.+.++++..............+.... .. +.-.....++|+|... .|.++-.. .-..||.+..
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~---~~--~~N~G~EGla~D~~~~-----~L~v~kE~-----~P~~l~~~~~ 148 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGF---PN--KGNKGFEGLAYDPKTN-----RLFVAKER-----KPKRLYEVNG 148 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE------S-----SS--EEEEEETTTT-----EEEEEEES-----SSEEEEEEES
T ss_pred CCcEEEEEEeccccccchhhceEEeccc---cc--CCCcceEEEEEcCCCC-----EEEEEeCC-----CChhhEEEcc
Confidence 8999999885432111111112221110 00 0011123899999887 56666665 6677887765
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.83 E-value=1 Score=35.22 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=59.7
Q ss_pred ceEEEEECCCCCEEEEEeCC-CcEEEEeCCCC-CC-CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEE
Q 026295 11 GTTSSSWNYCGQRLATGSTD-GTLSIFDSPDP-SS-SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWE 86 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~-~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd 86 (240)
.-+.++||||++.|..+... +.|.-|++... .. ........+....+..-.++...+ |.+.+++..+| .|..|+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad--G~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD--GNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC--CCEEEecccCCceEEEEC
Confidence 34579999999877777654 67777776521 00 011111111122344445666555 77775555554 899998
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEe
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFG 116 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 116 (240)
.. + +.+..+..+...+++++|-
T Consensus 242 pd-G-------~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 242 PD-G-------KLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CC-C-------cEEEEEECCCCCCccceEe
Confidence 87 4 7888888777788888884
No 391
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.74 E-value=0.29 Score=39.19 Aligned_cols=50 Identities=8% Similarity=0.181 Sum_probs=34.0
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
+.+.++|+.++ .+..+......+....|+| +|..++... ++.|.+++..+
T Consensus 23 ~~y~i~d~~~~--------~~~~l~~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 23 GDYYIYDIETG--------EITPLTPPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp EEEEEEETTTT--------EEEESS-EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTT
T ss_pred eeEEEEecCCC--------ceEECcCCccccccceeec--CCCeeEEEe-cCceEEEECCC
Confidence 46788888764 2333333356788899999 999888876 46788887655
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.70 E-value=2.7 Score=36.75 Aligned_cols=166 Identities=10% Similarity=0.041 Sum_probs=91.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCc-EEEEeEee------------e----cCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSS-FTCNLKTK------------V----HAGAILKVVWVPPEFGDAVACICSDGSLL 83 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~------------~----h~~~v~~~~~~~~~~~~~l~s~~~d~~v~ 83 (240)
+++|+++. .+.|.||+++...... .++...+. . -...|+.|....-.....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777766 4799999987432100 00010110 0 11234555443221246788899999999
Q ss_pred EEEeeecc---------CCC----cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295 84 LWEEIVED---------AQP----LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ 150 (240)
Q Consensus 84 iwd~~~~~---------~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 150 (240)
+|....-- ... ...++...+. ....+++++++.....+++|+++....|.||-..... .. ....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-~r-~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-ER-FYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc-cc-cccc
Confidence 99753210 000 0011222222 3467899999722377788888888889888765420 00 1110
Q ss_pred eeeecccceeeccccccceeeeEEEeCCCCCCCCc-eEEEEecCCCCCCCeEEEEEe
Q 026295 151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGS-SFVLGFNSDTPQLNSSKVWEF 206 (240)
Q Consensus 151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~-~l~~~~~dd~~~~~~i~iw~~ 206 (240)
... .+...|+ +|+|-++.....+. .++.++-. |.+.+|++
T Consensus 205 ~s~-~~~hNIP----------~VSFl~~~~d~~G~v~v~a~dI~-----G~v~~~~I 245 (717)
T PF08728_consen 205 PSH-QHSHNIP----------NVSFLDDDLDPNGHVKVVATDIS-----GEVWTFKI 245 (717)
T ss_pred ccc-ccccCCC----------eeEeecCCCCCccceEEEEEecc-----CcEEEEEE
Confidence 010 1223344 89998887543332 56666666 99999888
No 393
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=1.9 Score=34.95 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=93.8
Q ss_pred ceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEE
Q 026295 11 GTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWE 86 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd 86 (240)
.-..++++++++.+..+.. ++++.+.|.. +.+.+.....-..+ ..+.+.|+ |..+.... .++.|.+.|
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-----t~~~~~~~~vG~~P-~~~a~~p~--g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-----TNKVTATIPVGNTP-TGVAVDPD--GNKVYVTNSDDNTVSVID 188 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCC-----CCeEEEEEecCCCc-ceEEECCC--CCeEEEEecCCCeEEEEe
Confidence 3457899999987777665 5778787776 44555554432334 78999999 88666554 678999999
Q ss_pred eeeccCCCcccEEEEEe----eeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEee-eecccc
Q 026295 87 EIVEDAQPLQWKLCKSF----ESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAE-FQNAID 158 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~-~~~~~~ 158 (240)
.... ...+.. ......-..+.++| ++.++.+.... +.+...|..+ ...... +.....
T Consensus 189 ~~~~-------~v~~~~~~~~~~~~~~P~~i~v~~--~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~~ 253 (381)
T COG3391 189 TSGN-------SVVRGSVGSLVGVGTGPAGIAVDP--DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGSG 253 (381)
T ss_pred CCCc-------ceeccccccccccCCCCceEEECC--CCCEEEEEeccCCCceEEEEeCCC------ceEEEeccccccC
Confidence 7553 222100 11123335688888 88865554433 5788888776 222221 111110
Q ss_pred eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
.. ..+..+|.+. .+.+..... +.+.+-|..+.
T Consensus 254 ~~----------~~v~~~p~g~-----~~yv~~~~~----~~V~vid~~~~ 285 (381)
T COG3391 254 AP----------RGVAVDPAGK-----AAYVANSQG----GTVSVIDGATD 285 (381)
T ss_pred CC----------CceeECCCCC-----EEEEEecCC----CeEEEEeCCCC
Confidence 11 1577888887 455553322 67777776553
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.68 E-value=1.6 Score=34.06 Aligned_cols=111 Identities=12% Similarity=0.177 Sum_probs=57.0
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
.+.+..+.-+++|++++++..-....-|+.-.. .+++.... -...|..|.|.|+ +.+.+.+ ..|.|+.=+..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~--~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRN--SSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-T
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccC--ccceehhceecCC--CCEEEEe-CCcEEEEccCC
Confidence 356788888999999988876555556765422 46554433 3578999999998 7766544 78888876621
Q ss_pred eccCCCcccEEE-EEeeeccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295 89 VEDAQPLQWKLC-KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133 (240)
Q Consensus 89 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 133 (240)
.. ...|... ..+....-.+..++|.+ ++...++|+ .|.+
T Consensus 216 ~~---~~~w~~~~~~~~~~~~~~ld~a~~~--~~~~wa~gg-~G~l 255 (302)
T PF14870_consen 216 DD---GETWSEPIIPIKTNGYGILDLAYRP--PNEIWAVGG-SGTL 255 (302)
T ss_dssp TE---EEEE---B-TTSS--S-EEEEEESS--SS-EEEEES-TT-E
T ss_pred CC---ccccccccCCcccCceeeEEEEecC--CCCEEEEeC-CccE
Confidence 11 0222221 11112334478889987 777555544 5644
No 395
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.64 E-value=1.7 Score=34.10 Aligned_cols=131 Identities=10% Similarity=-0.042 Sum_probs=69.1
Q ss_pred ceEEEEECCCCCEEEEEeC-----C----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC
Q 026295 11 GTTSSSWNYCGQRLATGST-----D----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG 80 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~-----d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~ 80 (240)
..+.+...|+|.+-++... . ..=.||.+... ...+..+..+-..-+.|+|||+ ++.+..+.. .+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~~~~~~NGla~SpD--g~tly~aDT~~~ 185 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDDDLTIPNGLAFSPD--GKTLYVADTPAN 185 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecCcEEecCceEECCC--CCEEEEEeCCCC
Confidence 4456777888876665444 0 11134444311 1223333333445578999999 877776654 46
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecc
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNA 156 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~ 156 (240)
.|.-|++.........-.....+.......-.++... +|.+.+++..+| .|.+|+.. ++++..+..+
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa--dG~lw~~a~~~g~~v~~~~pd-------G~l~~~i~lP 253 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA--DGNLWVAAVWGGGRVVRFNPD-------GKLLGEIKLP 253 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC--CCCEEEecccCCceEEEECCC-------CcEEEEEECC
Confidence 7777776521110000011222222334555666755 777665544444 88888876 3555555544
No 396
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.62 E-value=0.45 Score=33.82 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=30.8
Q ss_pred ccEEeEEEeecC---C-CcEEEEEeCCCcEEEEEecCcccccceeEEeee
Q 026295 108 TQVLDVQFGVSS---T-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF 153 (240)
Q Consensus 108 ~~v~~~~~~~~~---~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~ 153 (240)
..+..++|||.. + +-.|++.+.++.|.||...... ..+|..+..+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-~~~W~~v~dv 134 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-QGEWNRVADV 134 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-cccEeeeeeh
Confidence 378999999931 1 2368889999999999876432 3445554443
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=1.8 Score=33.30 Aligned_cols=129 Identities=8% Similarity=0.121 Sum_probs=76.4
Q ss_pred eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeCCC
Q 026295 53 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYSDG 131 (240)
Q Consensus 53 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg 131 (240)
.+-+..+.++.|+|+ .+.|.+......-.++=...+ +.++++... -...-.|.+.- +++++++--.++
T Consensus 82 ~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~G-------dlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~ 150 (316)
T COG3204 82 LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEG-------DLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDR 150 (316)
T ss_pred ccccccccceeeCCC--cceEEEecCCCceEEEEecCC-------ceEEEecccccCChhHeEEec--CCEEEEEehhcc
Confidence 344556999999999 776666655555555544444 677776531 23345677765 788777777888
Q ss_pred cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
.+.++.+............ .+. .....+.-|.-..++|+|... .|..+-.- +=+.||....
T Consensus 151 ~l~~~~vd~~t~~~~~~~~-~i~-----L~~~~k~N~GfEGlA~d~~~~-----~l~~aKEr-----~P~~I~~~~~ 211 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQ-KIP-----LGTTNKKNKGFEGLAWDPVDH-----RLFVAKER-----NPIGIFEVTQ 211 (316)
T ss_pred eEEEEEEcCCccEEeccce-EEe-----ccccCCCCcCceeeecCCCCc-----eEEEEEcc-----CCcEEEEEec
Confidence 8888887653211111100 111 001111123334899999887 67777765 6677776653
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.33 E-value=0.15 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=24.5
Q ss_pred cEEeEEEeecCC-CcEEEEEeCCCcEEEEEecC
Q 026295 109 QVLDVQFGVSST-SLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 109 ~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~ 140 (240)
.|+++.|+|... ..+|+.+-.-|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999997322 14677777789999999995
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.30 E-value=1.8 Score=32.94 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=66.6
Q ss_pred ceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE-
Q 026295 11 GTTSSSWNYCGQRLATGS---TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE- 86 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd- 86 (240)
.+.+.+++++++.+|... ....+.++..... .... +. ...+..-.|.++ +...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~--~~--g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPV--LT--GGSLTRPSWDPD--GWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceee--cc--CCccccccccCC--CCEEEEEcCCCceEEEEe
Confidence 578899999999877765 2234555544321 1111 12 236777889888 88777766566666664
Q ss_pred eeeccCCCcccEEEE-EeeeccccEEeEEEeecCCCcEEEEEe---CCCcEEEEEec
Q 026295 87 EIVEDAQPLQWKLCK-SFESTSTQVLDVQFGVSSTSLKLVAAY---SDGHVKVYELL 139 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~ 139 (240)
...+.. .... ........|..+.++| +|..++... .++.|.+--+.
T Consensus 95 ~~~g~~-----~~~~v~~~~~~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 95 SASGTG-----EPVEVDWPGLRGRITALRVSP--DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred cCCCcc-----eeEEecccccCCceEEEEECC--CCcEEEEEEecCCCCeEEEEEEE
Confidence 222211 1111 1111112899999999 999877666 34677776554
No 400
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=2.7 Score=35.09 Aligned_cols=112 Identities=8% Similarity=0.029 Sum_probs=69.4
Q ss_pred eEEEEECCCCC-------EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC----ccEEEEEEcCCCCCCEEEEEecCC
Q 026295 12 TTSSSWNYCGQ-------RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA----GAILKVVWVPPEFGDAVACICSDG 80 (240)
Q Consensus 12 v~~~~~s~~~~-------~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~d~ 80 (240)
|+-+.+.|+.+ .-+.|-.|..|.-||.+..+ . ..+...++|. ....|.+=.. .-+++.|+.+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~--~-~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~G 451 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG--K-NKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKG 451 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccC--c-ceeeeeeccccccccccceeeecC---CceEEEeecCC
Confidence 55566666543 12345567788888876432 1 1122222221 1222333222 35688999999
Q ss_pred eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
.|++||-... ..-..+++...+|..|..+. +|.++++.+ +..+.+.++.
T Consensus 452 dIRLYdri~~-------~AKTAlPgLG~~I~hVdvta--dGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 452 DIRLYDRIGR-------RAKTALPGLGDAIKHVDVTA--DGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cEEeehhhhh-------hhhhcccccCCceeeEEeec--cCcEEEEec-ccEEEEEEEe
Confidence 9999997543 44556777888999999977 999776555 5677777764
No 401
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.17 E-value=1.9 Score=32.68 Aligned_cols=102 Identities=18% Similarity=0.087 Sum_probs=62.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
..+++.|+-.+.+.--|.. ++..+-... -..++-+-+.. - |++++.|+..|.+.+.+..++ ...
T Consensus 23 kT~v~igSHs~~~~avd~~-----sG~~~We~i-lg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tG-------s~~ 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQ-----SGNLIWEAI-LGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTG-------SQI 86 (354)
T ss_pred ceEEEEecCCceEEEecCC-----CCcEEeehh-hCceeeeeeEE-E--CCEEEEEEccCcEEEEEecch-------hhe
Confidence 3567777777777777766 222222111 11222222211 2 888999999999999998776 444
Q ss_pred EEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 101 KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
..+.....--......+ ++..+..++.|++....|.++
T Consensus 87 w~f~~~~~vk~~a~~d~--~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCDF--DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred eeeeehhhhccceEEcC--CCceEEEecCCCcEEEecccc
Confidence 44443211112233445 888899999999999999887
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.98 E-value=0.11 Score=37.98 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
+.-++.|+.+|.|.+|...... .....+......|.++ +...+++.+..+++.||.|+.|+..-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g------~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG------AHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccc------hHHHhhhcccccceec-cccccccceeEEeccCCceeeecccc
Confidence 5668899999999999875211 1111111111222222 11123566788999999999998864
No 403
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.73 E-value=1.4 Score=29.67 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEeecCCCcEEEEEeCCCcEEEEEecCccccc--ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295 114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILK--NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF 191 (240)
Q Consensus 114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~ 191 (240)
.|.. ....|++++.-|+|.|.+........ ....+..+.. ...++ ...+-.|.|... ...|++|+
T Consensus 5 kfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~it-------alaaG~l~~~~~---~D~LliGt 71 (136)
T PF14781_consen 5 KFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEIT-------ALAAGRLKPDDG---RDCLLIGT 71 (136)
T ss_pred EeCC--CceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceE-------EEEEEecCCCCC---cCEEEEec
Confidence 4543 44568888889999999876432211 1111222211 12222 001233655332 55888888
Q ss_pred cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295 192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234 (240)
Q Consensus 192 ~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 234 (240)
. ..+..||+......+.. + -.+.|+++.+
T Consensus 72 ~------t~llaYDV~~N~d~Fyk--e------~~DGvn~i~~ 100 (136)
T PF14781_consen 72 Q------TSLLAYDVENNSDLFYK--E------VPDGVNAIVI 100 (136)
T ss_pred c------ceEEEEEcccCchhhhh--h------CccceeEEEE
Confidence 7 78999999887655433 1 1225777666
No 404
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.64 E-value=3.1 Score=35.03 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=36.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc------cEE--EEEEcCCCCC-CEEEEEecCCeEEEEEeeec
Q 026295 21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG------AIL--KVVWVPPEFG-DAVACICSDGSLLLWEEIVE 90 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~ 90 (240)
+.++..++.++.|.-.|.. +++.+-.+..... .+. .+.. . + ..++.++.++.|..+|.+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~-----tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~--~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAA-----TGKVLWRYDPKLPADRGCCDVVNRGVAY--W--DPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECC-----CChhhceeCCCCCccccccccccCCcEE--c--cCCeEEEecCCCeEEEEECCCC
Confidence 4466777778888888886 4444444332111 000 0111 1 3 66777888999999998776
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.52 E-value=2 Score=34.12 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=33.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcE-EEEeEe----eecCccEEEEEEcCC
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSF-TCNLKT----KVHAGAILKVVWVPP 67 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~ 67 (240)
-+.|+|.|+|++|++ ...|.|++++... .. ..+..+ .........+++.|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g----~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDG----SLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTT----EECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCC----cCcceecccccccccccCCcccceeccc
Confidence 478999999977765 5689999999432 22 222222 123456889999884
No 406
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.46 E-value=3.7 Score=33.73 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=23.6
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPD 40 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~ 40 (240)
+.|.++.|+.+.. |++-..||.+++||+.+
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence 5788899988654 55566889999999864
No 407
>PHA03098 kelch-like protein; Provisional
Probab=93.37 E-value=4 Score=34.73 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=54.0
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEee
Q 026295 20 CGQRLATGSTDG------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEI 88 (240)
Q Consensus 20 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~ 88 (240)
++..++.|+.++ .+..||.... +|..+..+.........+.+ + +.+++.|+.++ .+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~R~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTK---SWNKVPELIYPRKNPGVTVF--N--NRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCC---eeeECCCCCcccccceEEEE--C--CEEEEEeCCCCCEecceEEEEcCC
Confidence 455666666542 4566776643 55444433311111222222 3 66677777652 45666665
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC------CcEEEEEecC
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD------GHVKVYELLD 140 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~ 140 (240)
. ..|.....+.........+.+ ++.+++.|+.+ ..+..||+.+
T Consensus 367 ~-----~~W~~~~~lp~~r~~~~~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 367 E-----SKWREEPPLIFPRYNPCVVNV----NNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred C-----CceeeCCCcCcCCccceEEEE----CCEEEEECCcCCCCcccceEEEEeCCC
Confidence 4 456665555433322222222 56767777632 3577888765
No 408
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.21 E-value=3.8 Score=33.09 Aligned_cols=109 Identities=8% Similarity=0.120 Sum_probs=55.6
Q ss_pred ceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295 11 GTTSSSWNYCGQRLATGS-----------TDG-TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS 78 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~-----------~d~-~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 78 (240)
....|+|+++|+++++-. ..+ .|.+++-.... +.......+.........+++.++ + ++++ ..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-G~~d~~~vfa~~l~~p~Gi~~~~~--G-lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-GKYDKSNVFAEELSMVTGLAVAVG--G-VYVA-TP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-CCcceeEEeecCCCCccceeEecC--C-EEEe-CC
Confidence 456799999999877753 223 66666543210 011222333332344678888787 7 4444 33
Q ss_pred CCeEEEE-EeeeccCCCc-ccEEE-EEeee----ccccEEeEEEeecCCCcEEEEEe
Q 026295 79 DGSLLLW-EEIVEDAQPL-QWKLC-KSFES----TSTQVLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 79 d~~v~iw-d~~~~~~~~~-~~~~~-~~~~~----~~~~v~~~~~~~~~~~~~l~~~~ 128 (240)
. .|..+ |.. ++.... ..+.+ ..+.. +......+.|.| +|.+.++.+
T Consensus 90 ~-~i~~~~d~~-gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp--DG~LYv~~G 142 (367)
T TIGR02604 90 P-DILFLRDKD-GDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP--DGWLYFNHG 142 (367)
T ss_pred C-eEEEEeCCC-CCCCCCCccEEEEEccCCCCCcccccccCceECC--CCCEEEecc
Confidence 3 34333 332 211111 11222 22322 134577899988 887655544
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.21 E-value=3.4 Score=33.86 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCcEEEEeCCCCCCCcEEEEeEeee-cC-ccEEEEEEcCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295 30 DGTLSIFDSPDPSSSSFTCNLKTKV-HA-GAILKVVWVPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST 106 (240)
Q Consensus 30 d~~i~iw~~~~~~~~~~~~~~~~~~-h~-~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 106 (240)
-.++.+||+. +.+.++++.- .+ .....|.|.++.... -|+.+....+|..|--... ..|.....+.-.
T Consensus 221 G~~l~vWD~~-----~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~----g~W~a~kVi~ip 291 (461)
T PF05694_consen 221 GHSLHVWDWS-----TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD----GEWAAEKVIDIP 291 (461)
T ss_dssp --EEEEEETT-----TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET----TEEEEEEEEEE-
T ss_pred cCeEEEEECC-----CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC----CCeeeeEEEECC
Confidence 4579999999 5577777762 22 346788887662233 3444444445554443222 335544333211
Q ss_pred -------------------cccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCccc
Q 026295 107 -------------------STQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLI 143 (240)
Q Consensus 107 -------------------~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~ 143 (240)
..-|+.|.+|. +.++|...+ ..|.|+.||+..+.+
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred CcccCcccccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCCC
Confidence 23468888988 888776555 789999999988644
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.19 E-value=2.4 Score=34.71 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=51.5
Q ss_pred EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccE-EeEEE-eec----------
Q 026295 51 KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQV-LDVQF-GVS---------- 118 (240)
Q Consensus 51 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~-~~~---------- 118 (240)
.+......+.+++.+|. +.+.++...-|.|.++|+..+ ..++.+++.+..= .-+.. .+.
T Consensus 302 ~l~D~~R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~-------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~ 372 (415)
T PF14655_consen 302 GLPDSKREGESICLSPS--GRLAAVTDSLGRVLLIDVARG-------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP 372 (415)
T ss_pred eeccCCceEEEEEECCC--CCEEEEEcCCCcEEEEECCCC-------hhhhhhccCccceEEEEEeeccccccccccccc
Confidence 34444566889999999 998888877889999999876 5666666533221 00000 000
Q ss_pred ----CCCcE-EEEEeCCCcEEEEEecC
Q 026295 119 ----STSLK-LVAAYSDGHVKVYELLD 140 (240)
Q Consensus 119 ----~~~~~-l~~~~~dg~v~iw~~~~ 140 (240)
+...+ ++-+-.-|.|.||.++.
T Consensus 373 ~~~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 373 KSSSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred CCCCcceEEEEEEeccCCeEEEEecCC
Confidence 01122 34456778999999987
No 411
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.06 E-value=0.82 Score=37.36 Aligned_cols=166 Identities=9% Similarity=0.095 Sum_probs=92.2
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEE-EEEEcCCCCCCEEEEEecCCeEEEE-E
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAIL-KVVWVPPEFGDAVACICSDGSLLLW-E 86 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iw-d 86 (240)
..|..+-..|+|+.|..-+. ..+.|+++.+......+.+..-.+ ....|. .+..-.. |.-+..++.||.|.-| |
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G--g~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG--GFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC--ceeEEEEcCCCceeeeee
Confidence 45666778999998777665 678899987542111111111011 001121 1121223 5567788889988766 5
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA 166 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 166 (240)
.+..+ ++.+..++.++-....+..+. |..+-+-+++-+.+|++.++..... ..+.. +..-....
T Consensus 298 vr~~~--~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~-----~~lL~--~~~~~~~~----- 361 (733)
T COG4590 298 VRRDG--QPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSE-----KLLLF--ERAYQAPQ----- 361 (733)
T ss_pred eecCC--CCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccC-----cceeh--hhhhcCcc-----
Confidence 54332 245555555554444444432 3224455777788888887765431 11111 11111112
Q ss_pred cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
.+.++|... +|++-.. |+|+++.+++..
T Consensus 362 -----~~~~Sp~~~-----~Ll~e~~------gki~~~~l~Nr~ 389 (733)
T COG4590 362 -----LVAMSPNQA-----YLLSEDQ------GKIRLAQLENRN 389 (733)
T ss_pred -----eeeeCcccc-----hheeecC------CceEEEEecCCC
Confidence 678999987 6766554 899999998764
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.63 E-value=3.3 Score=30.92 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=59.4
Q ss_pred EEEEECCCCCEEE-EEeCCCcEEEEeCCCC--CCCcEEEEeEeeec---Cc-cEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 13 TSSSWNYCGQRLA-TGSTDGTLSIFDSPDP--SSSSFTCNLKTKVH---AG-AILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 13 ~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~h---~~-~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
+.++|+.+.+.+. +-+.+-.|.-||.+-+ .....+.+..++.. +. .--.++.... |.+.++.-.-++|...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEEE
Confidence 3578887776444 4455566766884422 11122233333320 11 1112333344 7877777777899999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEe
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFG 116 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 116 (240)
|..++ +.+.+++-....|++++|-
T Consensus 239 dp~tG-------K~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTG-------KILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCC-------cEEEEEEcCCCceEEEEec
Confidence 99888 9999999999999999995
No 413
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=5.6 Score=33.38 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=53.7
Q ss_pred ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc-----ccceeE-EeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295 108 TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI-----LKNWQL-QAEFQNAIDSVTMFRKASCISASISWNPQKGE 181 (240)
Q Consensus 108 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~ 181 (240)
-.|..+..++ .|..++..+.+|.+.++=.+.-+. .++... ..++.....-... . ..-...-++|+|+...
T Consensus 104 feV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-S-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-C-CceeeeeccccCCccC
Confidence 4567788888 898899999999776654322110 010001 1111111000000 0 0112346779998832
Q ss_pred CCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295 182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP 215 (240)
Q Consensus 182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~ 215 (240)
+..|..-.+| +.||||++......|..
T Consensus 180 --D~hL~iL~sd-----nviRiy~lS~~telylq 206 (741)
T KOG4460|consen 180 --DPHLVLLTSD-----NVIRIYSLSEPTELYLQ 206 (741)
T ss_pred --CceEEEEecC-----cEEEEEecCCcchhhcc
Confidence 2367777777 99999999876655543
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.50 E-value=3.7 Score=31.20 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=78.0
Q ss_pred cEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 58 AILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 58 ~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
.+.+.+++++ +..++... .++.-.+|-...+. ....... ...+..-.|++ ++...+....+...+++
T Consensus 25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~~------~~~~~~~--g~~l~~PS~d~--~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAGG------PVRPVLT--GGSLTRPSWDP--DGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCC--CCeEEEEEEcCCCCEEEEEcCCC------cceeecc--CCccccccccC--CCCEEEEEcCCCceEEE
Confidence 6788999999 88776655 23333444433331 1111112 23677788988 77766666656666666
Q ss_pred Ee-cCcccccceeEEeeeecc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC-
Q 026295 137 EL-LDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR- 212 (240)
Q Consensus 137 ~~-~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~- 212 (240)
.. ... ..... .+... ...|. ++.++|++. .+|.-..+... +.|.|--+......
T Consensus 93 ~~~~~g----~~~~~-~v~~~~~~~~I~----------~l~vSpDG~-----RvA~v~~~~~~--~~v~va~V~r~~~g~ 150 (253)
T PF10647_consen 93 RDSASG----TGEPV-EVDWPGLRGRIT----------ALRVSPDGT-----RVAVVVEDGGG--GRVYVAGVVRDGDGV 150 (253)
T ss_pred EecCCC----cceeE-EecccccCCceE----------EEEECCCCc-----EEEEEEecCCC--CeEEEEEEEeCCCCC
Confidence 42 221 01111 11111 11344 899999998 45544421100 67777766433222
Q ss_pred -cceeEeeecCCCCCCceEEEEEecCCC
Q 026295 213 -WLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 213 -~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
..+...+.........+++++|.++..
T Consensus 151 ~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 151 PRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeccceEecccccCcceeeeecCCCE
Confidence 223222222222345899999999863
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=5.3 Score=32.93 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=68.8
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295 14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ 93 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 93 (240)
.+=|+...+.|++.. .|-+.=|...+++.. .++.--...+++|.+++|+++ .+.++.--.+.+|.+++......
T Consensus 27 gvFfDDaNkqlfavr-SggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~- 100 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVR-SGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNS- 100 (657)
T ss_pred ceeeccCcceEEEEe-cCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCch-
Confidence 344554444444433 355666766654321 112111234679999999999 89999999999999998853311
Q ss_pred CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
......+.+.....|....|+. + .-+|..+..| +-+|...
T Consensus 101 --~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 101 --QLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred --hhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-eEEEEEc
Confidence 0112223334456688999976 4 3366666555 6777664
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.23 E-value=3.5 Score=30.28 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=64.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---C---eEEEEE---eeeccC
Q 026295 22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---G---SLLLWE---EIVEDA 92 (240)
Q Consensus 22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~---~v~iwd---~~~~~~ 92 (240)
+.|..+.....|.+|++..+ ..+.+..|.. -+.|..+.++.. |+++++-=.+ . .+|+|- ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~---~~~~~~~F~T-v~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE---ECPLLCTFST-VGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC---CCceeEEEcc-hhheeEEEeccc--cceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 34434345578999999843 4466777775 478999999998 9999985221 2 566653 110000
Q ss_pred C----------------Cccc--EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 93 Q----------------PLQW--KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 93 ~----------------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
. ...- ..+-+++ ....+.+++.+|. .|+ |+.|+. +++.+|.+..
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~-tG~-LlVg~~-~~l~lf~l~~ 164 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPV-TGN-LLVGCG-NKLVLFTLKY 164 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCC-CCC-EEEEcC-CEEEEEEEEE
Confidence 0 0000 0111111 2346678888874 566 555554 5789998874
No 417
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.81 E-value=5.2 Score=31.34 Aligned_cols=152 Identities=11% Similarity=0.213 Sum_probs=71.2
Q ss_pred cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295 45 SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL 124 (240)
Q Consensus 45 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 124 (240)
+|+.+. ..-.+.+..+.-+++ |.+++++..-....-||.-. ..|.+.... ....|..|.|.| ++.+.
T Consensus 135 tW~~~~--~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~-----~~w~~~~r~--~~~riq~~gf~~--~~~lw 201 (302)
T PF14870_consen 135 TWQAVV--SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPGQ-----TTWQPHNRN--SSRRIQSMGFSP--DGNLW 201 (302)
T ss_dssp SEEEEE---S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT------SS-EEEE----SSS-EEEEEE-T--TS-EE
T ss_pred CeeEcc--cCCcceeEeEEECCC--CcEEEEECcccEEEEecCCC-----ccceEEccC--ccceehhceecC--CCCEE
Confidence 666543 233567888888888 99888876544555666422 345554433 347899999998 87754
Q ss_pred EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295 125 VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW 204 (240)
Q Consensus 125 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw 204 (240)
+ ....|.|++=+.... ...|.. +..++ ....-.+..++|.++.. +.|+|+. | .+|
T Consensus 202 ~-~~~Gg~~~~s~~~~~--~~~w~~------~~~~~---~~~~~~~ld~a~~~~~~-----~wa~gg~------G--~l~ 256 (302)
T PF14870_consen 202 M-LARGGQIQFSDDPDD--GETWSE------PIIPI---KTNGYGILDLAYRPPNE-----IWAVGGS------G--TLL 256 (302)
T ss_dssp E-EETTTEEEEEE-TTE--EEEE---------B-TT---SS--S-EEEEEESSSS------EEEEEST------T---EE
T ss_pred E-EeCCcEEEEccCCCC--cccccc------ccCCc---ccCceeeEEEEecCCCC-----EEEEeCC------c--cEE
Confidence 4 447888887662221 111221 11111 01111233889998876 7777765 4 333
Q ss_pred EeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295 205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALN 237 (240)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 237 (240)
....+-+.|+...... .-...++.|.|.++
T Consensus 257 ~S~DgGktW~~~~~~~---~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 257 VSTDGGKTWQKDRVGE---NVPSNLYRIVFVNP 286 (302)
T ss_dssp EESSTTSS-EE-GGGT---TSSS---EEEEEET
T ss_pred EeCCCCccceECcccc---CCCCceEEEEEcCC
Confidence 3444445565543222 12236788888654
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=91.65 E-value=3.5 Score=34.68 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=58.4
Q ss_pred CCCCEEEEEeCCC---cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295 19 YCGQRLATGSTDG---TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL 95 (240)
Q Consensus 19 ~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 95 (240)
-+|+..+.|+.++ .+..||.... .|..+..+.........+.+ + +.+.+.| |.+.+||... .
T Consensus 361 ~~g~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~-----~ 425 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYLLPNHD---QWQFGPSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESS-----N 425 (480)
T ss_pred ECCEEEEecCcCCCCccEEEEeCCCC---EEEeCCCCCCccccceEEEE--C--CEEEEEC---CceEEecCCC-----C
Confidence 3566777777553 4667887643 66655444322222222222 3 5555555 3567788754 5
Q ss_pred ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecC
Q 026295 96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLD 140 (240)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~ 140 (240)
.|..+..+.........+.+ ++.+.+.|+.+ ..|..||..+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cEeEcCCCCCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCC
Confidence 78877766544444444443 67778888754 3466777664
No 419
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.37 E-value=6.1 Score=31.33 Aligned_cols=155 Identities=11% Similarity=0.098 Sum_probs=77.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295 22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+.|.+-+.||.+.-..+...+....+....|..-..++. .-.+... +..++-.+..|.|+--|+..... +..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~-----~~~ 220 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSA-----KFG 220 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSE-----EEE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcc-----ccc
Confidence 457777889999888887654322221122222222222 2234344 55555567889888888765422 222
Q ss_pred EEeeec----------cccEEeEEEeecCCCcEEEEEe--CC-----C--cEEEEEecCcccccceeEEeeeecccceee
Q 026295 101 KSFEST----------STQVLDVQFGVSSTSLKLVAAY--SD-----G--HVKVYELLDPLILKNWQLQAEFQNAIDSVT 161 (240)
Q Consensus 101 ~~~~~~----------~~~v~~~~~~~~~~~~~l~~~~--~d-----g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~ 161 (240)
..+... .+.-.-+++++. .+++++.-. .+ + .|-++|+.+ .+.+.++.... .+.
T Consensus 221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~-~~rlyvLMh~g~~gsHKdpgteVWv~D~~t------~krv~Ri~l~~-~~~ 292 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWRPGGWQLIAYHAA-SGRLYVLMHQGGEGSHKDPGTEVWVYDLKT------HKRVARIPLEH-PID 292 (342)
T ss_dssp EEEESS-HHHHHTTEEE-SSS-EEEETT-TTEEEEEEEE--TT-TTS-EEEEEEEETTT------TEEEEEEEEEE-EES
T ss_pred CcccccCccccccCcCCcceeeeeeccc-cCeEEEEecCCCCCCccCCceEEEEEECCC------CeEEEEEeCCC-ccc
Confidence 222211 122334666652 222222211 11 1 256666665 55555554321 222
Q ss_pred ccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCC
Q 026295 162 MFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~ 210 (240)
++..+.+.. ++|.+. ..+ +.+.+||..+++
T Consensus 293 ----------Si~Vsqd~~----P~L~~~~~~~-----~~l~v~D~~tGk 323 (342)
T PF06433_consen 293 ----------SIAVSQDDK----PLLYALSAGD-----GTLDVYDAATGK 323 (342)
T ss_dssp ----------EEEEESSSS-----EEEEEETTT-----TEEEEEETTT--
T ss_pred ----------eEEEccCCC----cEEEEEcCCC-----CeEEEEeCcCCc
Confidence 677777664 255544 445 899999998875
No 420
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.25 E-value=0.16 Score=44.69 Aligned_cols=135 Identities=11% Similarity=0.105 Sum_probs=72.0
Q ss_pred eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CCcEEEEEeCCC
Q 026295 53 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TSLKLVAAYSDG 131 (240)
Q Consensus 53 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg 131 (240)
++-.+.|..+.|.+.+..+ +. -.-|.+.+|++....++-..-..+.........+.-|.|+|.. +.-++..+-.++
T Consensus 129 kgf~G~v~dl~fah~~~pk-~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPK-GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred hcCCCCcccccccccCChH-HH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4556778888885542222 22 3346788999865433211111222223333455677777632 334566666778
Q ss_pred cEEEEEecCcccccceeEEeeeecccceeeccccccceeee-EEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295 132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISAS-ISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD 207 (240)
Q Consensus 132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~ 207 (240)
.|++.+..... ..-+..|...+.......-.+-- -..+|+|. .|+.+.+| |.++.|...
T Consensus 206 ~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-----v~a~a~~d-----G~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-----VFAWAISD-----GSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-----EEEEeecC-----Cccceeeee
Confidence 88887765421 11222333322211000000001 12789988 89999999 999999864
No 421
>PLN02153 epithiospecifier protein
Probab=91.22 E-value=6.5 Score=31.31 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=17.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEe
Q 026295 20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKT 52 (240)
Q Consensus 20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~ 52 (240)
++++++.|+.+ ..+.+||.... +|..+..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~---~W~~~~~~ 119 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKN---EWTFLTKL 119 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCC---EEEEeccC
Confidence 45566666653 24677887643 56655443
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=6.6 Score=33.00 Aligned_cols=83 Identities=24% Similarity=0.280 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCCCEEEEEecCCeEEEEEee--eccCCCcccEEE---EEee--------eccccEEeEEEeecC-CCcE
Q 026295 58 AILKVVWVPPEFGDAVACICSDGSLLLWEEI--VEDAQPLQWKLC---KSFE--------STSTQVLDVQFGVSS-TSLK 123 (240)
Q Consensus 58 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~---~~~~--------~~~~~v~~~~~~~~~-~~~~ 123 (240)
.|..+..++. |..++-.+.+|.+.++=.+ ..++.....++. +++. ...-.+..++|+|+. ....
T Consensus 105 eV~~vl~s~~--GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPT--GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCC--CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3567777888 9988888888865443211 000000000111 1111 122346678999953 1245
Q ss_pred EEEEeCCCcEEEEEecCcc
Q 026295 124 LVAAYSDGHVKVYELLDPL 142 (240)
Q Consensus 124 l~~~~~dg~v~iw~~~~~~ 142 (240)
|..-+.|+.+++||+..+.
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 7777889999999997653
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.12 E-value=1.9 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCcEEEEEecCc
Q 026295 120 TSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 120 ~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
++.+|++.+.+|.+++||+.+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~ 42 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKG 42 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCC
Confidence 7888999999999999999873
No 424
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.19 E-value=13 Score=31.49 Aligned_cols=26 Identities=8% Similarity=-0.185 Sum_probs=20.8
Q ss_pred eEEEEecCCCCCCCeEEEEEeecCCCCccee
Q 026295 186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV 216 (240)
Q Consensus 186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~ 216 (240)
++++++.+ |.+...|..+++..|...
T Consensus 303 ~V~~g~~~-----G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 303 AIVHAPKN-----GFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEECCC-----ceEEEEECCCCcEeeEeE
Confidence 56677777 999999999998888653
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.03 E-value=7.4 Score=28.65 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---C---cEEEE-EecCccc
Q 026295 71 DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---G---HVKVY-ELLDPLI 143 (240)
Q Consensus 71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g---~v~iw-~~~~~~~ 143 (240)
+.|..+...+.|.+|++..... .++..|..- +.|..+.++. .|.++++-=.+ . .+|+| |.+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~-----~~~~~F~Tv-~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC-----PLLCTFSTV-GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC-----ceeEEEcch-hheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4443435567899999984322 566777654 7888999988 89999885422 2 56665 2221100
Q ss_pred ccceeEEeeeecccceee---cccc--------ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 144 LKNWQLQAEFQNAIDSVT---MFRK--------ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~---~~~~--------~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
.. ......+.+|...-+ +... ..-.+.+++-+|..+ -|++|+. +++.||.+...
T Consensus 101 ~~-~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-----~LlVg~~------~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 EN-SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-----NLLVGCG------NKLVLFTLKYQ 165 (215)
T ss_pred cC-CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-----CEEEEcC------CEEEEEEEEEE
Confidence 00 011112222110000 0000 011334788888776 4777776 79999988643
No 426
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.77 E-value=1.8 Score=21.88 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=19.4
Q ss_pred cccccceEEEEECCCCCEEEEEeC-C--CcEEEE
Q 026295 6 ATLDKGTTSSSWNYCGQRLATGST-D--GTLSIF 36 (240)
Q Consensus 6 ~~h~~~v~~~~~s~~~~~l~~~~~-d--~~i~iw 36 (240)
......-....|||||++|+-.+. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456778899999987776554 3 555555
No 427
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.34 E-value=19 Score=32.45 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=68.9
Q ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCC---CCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEEecC
Q 026295 11 GTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPS---SSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 11 ~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
+...++|+| +.+.||.....|...||++.... ...+.......++ ...-..+.|.++ ...|+.++.
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~--~~~lLv~~r- 223 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD--SNRLLVCNR- 223 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC--CCEEEEEcC-
Confidence 677899998 55799999999999999992111 0122211111111 122336788776 666666653
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
..+.++|+..... ...-........|..+.-+|...+..|+..+ ..|.+.++..
T Consensus 224 ~~l~~~d~~~~~~-----~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQ-----TEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCc-----cchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 5688889876421 1111122344678888777731233333322 3577777765
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.20 E-value=6.6 Score=32.41 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCEEEEEeCCCcEEEE-eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295 21 GQRLATGSTDGTLSIF-DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL 99 (240)
Q Consensus 21 ~~~l~~~~~d~~i~iw-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 99 (240)
|.-|..++.||-|.-| |....++.....++.++-...++..+. |++..+.+++-...|++.++..... +
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~--------~ 349 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSE--------K 349 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccC--------c
Confidence 4567788889888776 555443334444444443334444443 4433567888888888887765442 2
Q ss_pred EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
..-++..-..+.-+++|| ++.++++-. .|.++++.+...
T Consensus 350 ~lL~~~~~~~~~~~~~Sp--~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 350 LLLFERAYQAPQLVAMSP--NQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred ceehhhhhcCcceeeeCc--ccchheeec-CCceEEEEecCC
Confidence 222222223566789999 888777654 467999988764
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.97 E-value=12 Score=29.77 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=20.2
Q ss_pred EEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295 110 VLDVQFGVSSTSLKLVAAYSDGHVKVYE 137 (240)
Q Consensus 110 v~~~~~~~~~~~~~l~~~~~dg~v~iw~ 137 (240)
.+.|+|.| +|.+ +++...|.|++++
T Consensus 4 P~~~a~~p--dG~l-~v~e~~G~i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLP--DGRL-LVAERSGRIWVVD 28 (331)
T ss_dssp EEEEEEET--TSCE-EEEETTTEEEEEE
T ss_pred ceEEEEeC--CCcE-EEEeCCceEEEEe
Confidence 47899999 8875 4556699999998
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.75 E-value=0.33 Score=42.78 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=62.9
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc-c-EEEEEEcCC-------CCCCEEEEEec-CCeEEEEE
Q 026295 17 WNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG-A-ILKVVWVPP-------EFGDAVACICS-DGSLLLWE 86 (240)
Q Consensus 17 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~-------~~~~~l~s~~~-d~~v~iwd 86 (240)
.||||+.||.+..||.++.|.+.-.+....+++...+.|++ + |+.+ +... .+-.++++++. ...+++|.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence 68999999999999999999886444334566677777763 2 3333 2211 01123444433 44677887
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc------------EEEEEeCCCcEEEEEecC
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL------------KLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~l~~~~~dg~v~iw~~~~ 140 (240)
.. .|+|+ +......|..+. |+ ++. .++.-+.++.|++|.-+.
T Consensus 322 ~a-------~w~Cl--l~~~~d~v~iV~--p~-~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 322 EA-------PWQCL--LDKLIDGVQIVG--PH-DGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cc-------chhhh--hhhcccceEeec--CC-CccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 63 35665 222223344443 31 222 133456778888886543
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.72 E-value=3 Score=30.92 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=41.6
Q ss_pred CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
++++++.+.+|.+++||+...............+. .....|..+.++. +|.-+++-+ +|....|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEeccc
Confidence 78888999999999999987621100000000011 2345677777765 787665544 5778888765
No 432
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.22 E-value=15 Score=30.25 Aligned_cols=172 Identities=12% Similarity=0.146 Sum_probs=78.9
Q ss_pred EEEECCCCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecC---ccEEEEEEcCCCCCCEEEEEec------
Q 026295 14 SSSWNYCGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHA---GAILKVVWVPPEFGDAVACICS------ 78 (240)
Q Consensus 14 ~~~~s~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~------ 78 (240)
.+..-|+|+.++++-.| |-+-++|-+ +++......... ..-+++-|.|. .+.++|...
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-----tf~v~g~We~~~~~~~~gYDfw~qpr--~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE-----TFEVKGRWEKDRGPQPFGYDFWYQPR--HNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TT-----T--EEEE--SB-TT------EEEETT--TTEEEE-B---HHHH
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCc-----cccccceeccCCCCCCCCCCeEEcCC--CCEEEEeccCChhhc
Confidence 44455788888886432 335566665 556665554322 23456777776 666666532
Q ss_pred --------------CCeEEEEEeeeccCCCcccEEEEEeeecc--ccEEeEEEeecCCCcE-EEEEeCCCcEEEEEecCc
Q 026295 79 --------------DGSLLLWEEIVEDAQPLQWKLCKSFESTS--TQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 79 --------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~ 141 (240)
-.++.+||+... +.++++.... .....|.|...++..+ ++.+-...+|-.|--..
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r-------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~- 278 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTR-------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD- 278 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTT-------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-
T ss_pred ccCCChhHhhcccccCeEEEEECCCC-------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-
Confidence 258999999887 8888887532 3456778865434443 23233344444443211
Q ss_pred ccccceeEEeeeeccccee---------eccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCC
Q 026295 142 LILKNWQLQAEFQNAIDSV---------TMFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHN 211 (240)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~ 211 (240)
...|+....+......+ .+++....-+..+..+.+.. +|.+. ... |.||.||+.....
T Consensus 279 --~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr-----fLYvs~W~~-----GdvrqYDISDP~~ 346 (461)
T PF05694_consen 279 --DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR-----FLYVSNWLH-----GDVRQYDISDPFN 346 (461)
T ss_dssp --TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS------EEEEEETTT-----TEEEEEE-SSTTS
T ss_pred --CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC-----EEEEEcccC-----CcEEEEecCCCCC
Confidence 13355554444333221 11222233445888888875 55554 455 9999999987654
Q ss_pred C
Q 026295 212 R 212 (240)
Q Consensus 212 ~ 212 (240)
.
T Consensus 347 P 347 (461)
T PF05694_consen 347 P 347 (461)
T ss_dssp -
T ss_pred C
Confidence 3
No 433
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=87.02 E-value=15 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=16.2
Q ss_pred CCCEEEEEeCCC-----------cEEEEeCCCCCCCcEEEEe
Q 026295 20 CGQRLATGSTDG-----------TLSIFDSPDPSSSSFTCNL 50 (240)
Q Consensus 20 ~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~ 50 (240)
++.+.+.|+.+. .+..||.... +|..+.
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n---~W~~~~ 122 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN---SWQKLD 122 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC---EEEeCC
Confidence 466666666432 3666777643 565544
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.96 E-value=24 Score=32.20 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=76.3
Q ss_pred ceEEEEECCC-CCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295 11 GTTSSSWNYC-GQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 11 ~v~~~~~s~~-~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
.|.++.|..| +.++++|. ..|.|.||.....+ ..+.+..... ++.+.++.-- + |+++|.- .
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~--~L~~v~e~~v-~Gav~aL~~f-n--gkllA~I--n 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN--SLELVAETVV-KGAVYALVEF-N--GKLLAGI--N 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC--ceeeeeeeee-ccceeehhhh-C--CeEEEec--C
Confidence 3445567776 67888775 23677777776411 4445544443 4566666542 2 6666655 4
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
..|++|+...+ +.++.-..+...+..+...- .+..+++|..-+.+.+...+.
T Consensus 848 ~~vrLye~t~~-------~eLr~e~~~~~~~~aL~l~v--~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 848 QSVRLYEWTTE-------RELRIECNISNPIIALDLQV--KGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred cEEEEEEcccc-------ceehhhhcccCCeEEEEEEe--cCcEEEEeeccceEEEEEEec
Confidence 58999999765 56666666777788888876 899999999888888877764
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.82 E-value=13 Score=32.74 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=74.5
Q ss_pred ceEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----CC----CcEEEEeEeeecCccEEEEEEc--CCCCCC
Q 026295 11 GTTSSSWNY--CGQRLATGSTDGTLSIFDSPD-------P----SS----SSFTCNLKTKVHAGAILKVVWV--PPEFGD 71 (240)
Q Consensus 11 ~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~-------~----~~----~~~~~~~~~~~h~~~v~~~~~~--~~~~~~ 71 (240)
.|+-+.... ....|+.|..||.|.+|..+. . .. ...++...+. -...++.+++. .. .+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~--~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK--SR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc--ce
Confidence 455555544 446899999999999997621 0 00 0011222223 23568889986 44 67
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC---C-cEEEEEeCCCcEEEEEe
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST---S-LKLVAAYSDGHVKVYEL 138 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~-~~l~~~~~dg~v~iw~~ 138 (240)
++|.++....|.||-+...+.. +..... ..+...|.+|+|-+... | ..+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r---~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDER---FYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccc---cccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7777777778888876542110 011111 12557889999987431 2 26888899999999888
No 436
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.73 E-value=13 Score=28.84 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=55.1
Q ss_pred CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe------cCCeEEEEEeeeccCCCcccEEEEE-e
Q 026295 31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC------SDGSLLLWEEIVEDAQPLQWKLCKS-F 103 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~-~ 103 (240)
..|++||.... .|.... .+-.+.|.+|.|... .++++.|. ....+..||.... .|..+.. .
T Consensus 16 ~~lC~yd~~~~---qW~~~g--~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~-----~w~~~~~~~ 83 (281)
T PF12768_consen 16 PGLCLYDTDNS---QWSSPG--NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQ-----TWSSLGGGS 83 (281)
T ss_pred CEEEEEECCCC---EeecCC--CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCC-----eeeecCCcc
Confidence 46899998744 443322 224578999999755 56666653 3446778888653 3443333 1
Q ss_pred -eeccccEEeEEEeecCCCcEEEEEe-CC--CcEEEEEec
Q 026295 104 -ESTSTQVLDVQFGVSSTSLKLVAAY-SD--GHVKVYELL 139 (240)
Q Consensus 104 -~~~~~~v~~~~~~~~~~~~~l~~~~-~d--g~v~iw~~~ 139 (240)
..-..+|..+.+......++.++|. .+ ..|..||=.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 1223667777775432344454444 23 345666544
No 437
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.57 E-value=13 Score=28.52 Aligned_cols=108 Identities=8% Similarity=0.025 Sum_probs=60.6
Q ss_pred eEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccE--EEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 12 TTSSSWNYCGQRLATGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAI--LKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
...+.|..+|.++-+.+.-| .|+.+|+. +++......-. ... -.++... ..+..-.=.++...+||.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~-----tg~~~~~~~l~-~~~FgEGit~~~---d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLE-----TGKVLQSVPLP-PRYFGEGITILG---DKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETT-----TSSEEEEEE-T-TT--EEEEEEET---TEEEEEESSSSEEEEEET
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECC-----CCcEEEEEECC-ccccceeEEEEC---CEEEEEEecCCeEEEEcc
Confidence 45678877888888887776 67888887 33333322211 111 1222212 222223345677888888
Q ss_pred eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
.+. +.+.++.-. ..=+.++. ++..|+.......+.++|..+
T Consensus 118 ~tl-------~~~~~~~y~-~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 118 NTL-------KKIGTFPYP-GEGWGLTS----DGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp TTT-------EEEEEEE-S-SS--EEEE----CSSCEEEE-SSSEEEEE-TTT
T ss_pred ccc-------eEEEEEecC-CcceEEEc----CCCEEEEECCccceEEECCcc
Confidence 654 777777543 33356653 666677666677899999876
No 438
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.49 E-value=18 Score=30.23 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=36.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-----ecCccEEEEEEcCC
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-----VHAGAILKVVWVPP 67 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~ 67 (240)
..-+.|+|.|+|++|++-...|.|++++.... ....+..+. .-.+....|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCCceeccCCCCceeeEEECCC
Confidence 34678999999988877665699999875422 111221111 12566889999887
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.46 E-value=5.3 Score=34.15 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=38.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCC--CCcEEEEeEeee--------------------cCccEEEEEEcC----CCCCCE
Q 026295 19 YCGQRLATGSTDGTLSIFDSPDPS--SSSFTCNLKTKV--------------------HAGAILKVVWVP----PEFGDA 72 (240)
Q Consensus 19 ~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~--------------------h~~~v~~~~~~~----~~~~~~ 72 (240)
++...|+.+..||.+-........ ...+.... +.. -...+..+.... . ..+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 232 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEEL-FNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEIND--DTF 232 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ET--TTE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEE-eCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCC--CCE
Confidence 466788888899988877765311 00111110 000 113345555555 4 678
Q ss_pred EEEEecCCeEEEEEeeec
Q 026295 73 VACICSDGSLLLWEEIVE 90 (240)
Q Consensus 73 l~s~~~d~~v~iwd~~~~ 90 (240)
+++.+.|+.+|+||+.++
T Consensus 233 l~tl~~D~~LRiW~l~t~ 250 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETG 250 (547)
T ss_dssp EEEEETTSEEEEEETTTT
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999999999876
No 440
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.90 E-value=15 Score=28.91 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=33.9
Q ss_pred CCEEEEEecC-----CeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCc----EEEEEec
Q 026295 70 GDAVACICSD-----GSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGH----VKVYELL 139 (240)
Q Consensus 70 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~----v~iw~~~ 139 (240)
+.+.+.|+.. ..+..||+.. ..|..+..+.. ..... ..... ++.+.+.|+.++. +.+||+.
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~~p~~~r~~~--~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLET-----QEWFELPDFPGEPRVQP--VCVKL--QNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCC-----CCeeECCCCCCCCCCcc--eEEEE--CCEEEEEcCCCCccccceEEEecC
Confidence 5556666542 3566777654 46777655432 11211 22223 6677777776542 4577776
Q ss_pred C
Q 026295 140 D 140 (240)
Q Consensus 140 ~ 140 (240)
+
T Consensus 195 ~ 195 (323)
T TIGR03548 195 K 195 (323)
T ss_pred C
Confidence 5
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.81 E-value=18 Score=29.66 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=57.4
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED 91 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 91 (240)
...+..+++|.+++.+..-..++-||--. ..|+.+.. .....+..+.|.++ +.+++.+ .+|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~---~~W~~~~~--~~~~~l~~v~~~~d--g~l~l~g-~~G~l~~-S~d~G- 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ---PYWQPHNR--ASARRIQNMGWRAD--GGLWLLT-RGGGLYV-SKGTG- 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC---cceEEecC--CCccceeeeeEcCC--CCEEEEe-CCceEEE-ecCCC-
Confidence 44456677887777765532222333321 12343331 22456889999887 7776654 5666543 22222
Q ss_pred CCCcccE--EEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 92 AQPLQWK--LCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 92 ~~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
..|. ....... ....+..+.|.+ ++. ++.++..|.+...
T Consensus 311 ---~~~~~~~f~~~~~~~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s 353 (398)
T PLN00033 311 ---LTEEDFDFEEADIKSRGFGILDVGYRS--KKE-AWAAGGSGILLRS 353 (398)
T ss_pred ---CcccccceeecccCCCCcceEEEEEcC--CCc-EEEEECCCcEEEe
Confidence 1121 1122211 224578888876 666 5566667866543
No 442
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.64 E-value=16 Score=29.03 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=22.0
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCC
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d 130 (240)
..+.+||..+ ..|..+..+.. ..... +++ .. ++++++.|+.+
T Consensus 168 ~~v~~YDp~t-----~~W~~~~~~p~~~r~~~-~~~-~~--~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPST-----NQWRNLGENPFLGTAGS-AIV-HK--GNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCC-----CceeECccCCCCcCCCc-eEE-EE--CCEEEEEeeee
Confidence 3567777754 46777655542 11222 222 22 66777777643
No 443
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.29 E-value=14 Score=33.00 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=25.6
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 026295 7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDS 38 (240)
Q Consensus 7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~ 38 (240)
..++.|...+||.|.+.++....+..|-+++.
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 34568899999999997777777788888764
No 444
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.14 E-value=16 Score=28.38 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCCCEEEEEecCCe-EEEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeC-----C
Q 026295 59 ILKVVWVPPEFGDAVACICSDGS-LLLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYS-----D 130 (240)
Q Consensus 59 v~~~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-----d 130 (240)
-..|.++|. ...-++.+-.-|+ ..++|.... +.+.++.. .....-.-.||| +|.+|.+.-. .
T Consensus 70 ~Hgi~~~p~-~~ravafARrPGtf~~vfD~~~~-------~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~r 139 (366)
T COG3490 70 GHGIAFHPA-LPRAVAFARRPGTFAMVFDPNGA-------QEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNR 139 (366)
T ss_pred cCCeecCCC-CcceEEEEecCCceEEEECCCCC-------cCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCC
Confidence 345677766 2334445544454 467888665 33333322 122223356888 9997665433 3
Q ss_pred CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF 191 (240)
Q Consensus 131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~ 191 (240)
|.|-|||.+.. ++.+-++..+....+ .+.|.+++. .++++.
T Consensus 140 GViGvYd~r~~-----fqrvgE~~t~GiGpH----------ev~lm~DGr-----tlvvan 180 (366)
T COG3490 140 GVIGVYDAREG-----FQRVGEFSTHGIGPH----------EVTLMADGR-----TLVVAN 180 (366)
T ss_pred ceEEEEecccc-----cceecccccCCcCcc----------eeEEecCCc-----EEEEeC
Confidence 67899999853 555556655543333 889999987 666665
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=84.52 E-value=23 Score=29.82 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=26.3
Q ss_pred EEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecccc---EEeEEEeecCCCcEEEEEe
Q 026295 62 VVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQ---VLDVQFGVSSTSLKLVAAY 128 (240)
Q Consensus 62 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~~~~ 128 (240)
+...++ |.+++... ..+..+|... +.+......... -..+...| +|++|+.+.
T Consensus 153 ~~~l~n--G~ll~~~~--~~~~e~D~~G--------~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLPN--GNLLIGSG--NRLYEIDLLG--------KVIWEYDLPGGYYDFHHDIDELP--NGNLLILAS 208 (477)
T ss_dssp EEE-TT--S-EEEEEB--TEEEEE-TT----------EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEE
T ss_pred eeEcCC--CCEEEecC--CceEEEcCCC--------CEEEeeecCCcccccccccEECC--CCCEEEEEe
Confidence 555677 88776554 6788888754 444444332211 24556666 888887777
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=38 Score=32.00 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=51.5
Q ss_pred eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC------CEEEEEecCCeEEEEEeeeccCC--CcccEE
Q 026295 28 STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG------DAVACICSDGSLLLWEEIVEDAQ--PLQWKL 99 (240)
Q Consensus 28 ~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~ 99 (240)
+-|..+.+|+.... .....+.+-...|..|....++.| ++++....--.|.++-+.-.+.. ...+.-
T Consensus 96 TiDn~L~lWny~~~-----~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD-----NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EeCCeEEEEEcCCC-----CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 35788999999853 233444454556666665433212 23333333455666665433211 011111
Q ss_pred EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
...+......|.++.... +|+.++ ++.|| .+|.+.
T Consensus 171 ~~~i~~dg~~V~~I~~t~--nGRIF~-~G~dg--~lyEl~ 205 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTE--NGRIFF-AGRDG--NLYELV 205 (1311)
T ss_pred ceeeecCCceEEEEEecc--CCcEEE-eecCC--CEEEEE
Confidence 122223345677777544 888555 45566 456553
No 447
>PLN02193 nitrile-specifier protein
Probab=83.50 E-value=26 Score=29.50 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEe
Q 026295 20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEE 87 (240)
Q Consensus 20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~ 87 (240)
++++.+.|+.+ ..+.+||+... +|+.+..+.. ....-.++.. .. +.+.+.|+.++ .+..||+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~~~P~~R~~h~~~~-~~--~~iYv~GG~~~~~~~~~~~~yd~ 301 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTN---EWKLLTPVEEGPTPRSFHSMAA-DE--ENVYVFGGVSATARLKTLDSYNI 301 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCC---EEEEcCcCCCCCCCccceEEEE-EC--CEEEEECCCCCCCCcceEEEEEC
Confidence 45566666654 34777887644 6665544310 0011112222 23 55666666543 3556665
Q ss_pred eeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecC
Q 026295 88 IVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLD 140 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~ 140 (240)
.. ..|..+.... ..+.....+.+ ++.+++.++.+ ..+.+||+.+
T Consensus 302 ~t-----~~W~~~~~~~~~~~~R~~~~~~~~----~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 302 VD-----KKWFHCSTPGDSFSIRGGAGLEVV----QGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred CC-----CEEEeCCCCCCCCCCCCCcEEEEE----CCcEEEEECCCCCccCceEEEECCC
Confidence 44 3455443211 11111112222 56666666654 4578888876
No 448
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.14 E-value=6.9 Score=34.66 Aligned_cols=96 Identities=22% Similarity=0.404 Sum_probs=54.8
Q ss_pred CccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEE
Q 026295 56 AGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAA 127 (240)
Q Consensus 56 ~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~ 127 (240)
++.-..++|-|. |..+++-+.|| .|..+.-... .-..+ .+....+..++|+- ....++.+
T Consensus 246 ~g~e~~LSWkpq--gS~~ati~td~~~~S~~ViFfErNGL--------rHGef~lr~~~dEk~~~~~wn~--~s~vlav~ 313 (1243)
T COG5290 246 TGMEHQLSWKPQ--GSKYATIGTDGCSTSESVIFFERNGL--------RHGEFDLRVGCDEKAFLENWNL--LSTVLAVA 313 (1243)
T ss_pred ccchhccccccC--CceeeeeccCCCCCcceEEEEccCCc--------ccCCccccCCchhhhhhhhhhH--HHHHHHHh
Confidence 344456899998 99999887665 3444443221 11111 11234456677855 44434433
Q ss_pred eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCC
Q 026295 128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180 (240)
Q Consensus 128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~ 180 (240)
..+.|++|-... ..|-+..++.... +. -+.|+|...
T Consensus 314 -~~n~~~lwttkN----yhWYLK~e~~ip~--~s----------~vkwhpe~~ 349 (1243)
T COG5290 314 -EGNLLKLWTTKN----YHWYLKVERQIPG--IS----------YVKWHPEEK 349 (1243)
T ss_pred -hcceEEEEEccc----eEEEEEEeecCCC--cc----------eeeeccccC
Confidence 345799998765 3355555554332 22 678999775
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.08 E-value=12 Score=25.34 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=68.6
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEE---EcCCCCCCEEEEEecCCeEEEEE
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVV---WVPPEFGDAVACICSDGSLLLWE 86 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d~~v~iwd 86 (240)
..-+|+....-|+++..-|.|.|++....... ....+..+.- ...|.+|+ |.|....+.|+.|+ ...+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 44578888888999999999999987643210 1112333332 34566664 43333356666665 56789999
Q ss_pred eeeccCCCcccEEEEEeeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecC
Q 026295 87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~ 140 (240)
+... .-+. ++.-...|.++.+-.-.+ ..-++..+.+..|.-||...
T Consensus 80 V~~N-------~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 80 VENN-------SDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cccC-------chhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 9765 2221 223346677777743111 22355555566777777653
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.02 E-value=4.5 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=20.7
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeee
Q 026295 19 YCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKV 54 (240)
Q Consensus 19 ~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~ 54 (240)
|++++|.++. .++.|.++|.. +.+.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~-----~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA-----TNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC-----CCeEEEEEEC
Confidence 5676555544 57899999986 5556665554
No 451
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.34 E-value=27 Score=28.88 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEee---cCCCcEEEEEeCCCcEEEEEecCcccc--
Q 026295 70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGV---SSTSLKLVAAYSDGHVKVYELLDPLIL-- 144 (240)
Q Consensus 70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iw~~~~~~~~-- 144 (240)
.+.++.|+..|.++||+.....-+.. ..+.+.+ -..+|..+.... ......||+ =.-..+.||.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--cEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 56899999999999999854321111 1222222 335676666543 122233444 44567888887432211
Q ss_pred --cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 145 --KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 145 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
..+++.. +-.|.-.. .. ..+++-|-+......++.+-+.| |.+.+|+-+.
T Consensus 113 ~g~~~~L~~-~yeh~l~~-----~a---~nm~~G~Fgg~~~~~~IcVQS~D-----G~L~~feqe~ 164 (418)
T PF14727_consen 113 HGNQYQLEL-IYEHSLQR-----TA---YNMCCGPFGGVKGRDFICVQSMD-----GSLSFFEQES 164 (418)
T ss_pred cCcEEEEEE-EEEEeccc-----ce---eEEEEEECCCCCCceEEEEEecC-----ceEEEEeCCc
Confidence 0112111 11221110 11 15566666654445689999999 9999998654
No 452
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=82.33 E-value=3.8 Score=19.06 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=17.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEE
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIF 36 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw 36 (240)
-..++++++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3567777777777776666666654
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.27 E-value=23 Score=28.16 Aligned_cols=89 Identities=9% Similarity=-0.022 Sum_probs=41.3
Q ss_pred CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC------eEEEEEeeeccCCCcccEEEEEee
Q 026295 31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG------SLLLWEEIVEDAQPLQWKLCKSFE 104 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~ 104 (240)
..+.+||.... +|..+..+......-..+.. .+ +.+.+.|+.+. .+.++++... ...|..+..+.
T Consensus 168 ~~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~y~~~~~---~~~W~~~~~m~ 238 (346)
T TIGR03547 168 KNVLSYDPSTN---QWRNLGENPFLGTAGSAIVH-KG--NKLLLINGEIKPGLRTAEVKQYLFTGG---KLEWNKLPPLP 238 (346)
T ss_pred ceEEEEECCCC---ceeECccCCCCcCCCceEEE-EC--CEEEEEeeeeCCCccchheEEEEecCC---CceeeecCCCC
Confidence 35778887644 67666544311111122222 33 56666666431 2334554221 14577666553
Q ss_pred eccc----c-EEeEEEeecCCCcEEEEEeCC
Q 026295 105 STST----Q-VLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 105 ~~~~----~-v~~~~~~~~~~~~~l~~~~~d 130 (240)
.... . ....+... ++++++.|+.+
T Consensus 239 ~~r~~~~~~~~~~~a~~~--~~~Iyv~GG~~ 267 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGIS--NGVLLVAGGAN 267 (346)
T ss_pred CCCCCccccccEEeeeEE--CCEEEEeecCC
Confidence 3211 1 11112223 67777777753
No 454
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=81.34 E-value=9.1 Score=26.03 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=26.7
Q ss_pred EEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295 173 ISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL 236 (240)
Q Consensus 173 v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 236 (240)
--|+++.. +|..++..| +.|+.|.+...........+.. +..+...++|-|
T Consensus 16 P~yD~dt~-----llyl~gKGD----~~ir~yEv~~~~p~l~~l~~~~----s~~~~~G~~~lP 66 (136)
T PF08954_consen 16 PFYDEDTN-----LLYLAGKGD----GNIRYYEVSDESPYLHYLSEYR----SPEPQKGFAFLP 66 (136)
T ss_dssp EEE-TTT------EEEEEETT-----S-EEEEEE-SSTTSEEEEEEE------SS--SEEEE--
T ss_pred eeEcCCCC-----EEEEEeccC----cEEEEEEEcCCCCceEEccccc----cCCCeEeeEecC
Confidence 34777776 666666555 9999999987754444444443 444677788776
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=81.09 E-value=28 Score=28.18 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=33.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC--cEE-EEeEeee----cCccEEEEEEcCCCCCCEEEEEe
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS--SFT-CNLKTKV----HAGAILKVVWVPPEFGDAVACIC 77 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~-~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~ 77 (240)
..+.+++.++| ++++ ......++.+....... ..+ .+..+.. +......+.|.|+ |.+.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD--G~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD--GWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC--CCEEEecc
Confidence 34678888888 5544 44433334454332111 112 2222322 1344778999998 88666544
No 456
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.01 E-value=29 Score=28.41 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=42.0
Q ss_pred EEEEEcCCCCCCEEEEE-ecCC----eEEEEEeeeccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCC--
Q 026295 60 LKVVWVPPEFGDAVACI-CSDG----SLLLWEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDG-- 131 (240)
Q Consensus 60 ~~~~~~~~~~~~~l~s~-~~d~----~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-- 131 (240)
....++|+ +++++.+ +..| .++++|+.++ +.+.. +... ....+.|.+ ++..|+....+.
T Consensus 127 ~~~~~Spd--g~~la~~~s~~G~e~~~l~v~Dl~tg-------~~l~d~i~~~--~~~~~~W~~--d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 127 GGFSVSPD--GKRLAYSLSDGGSEWYTLRVFDLETG-------KFLPDGIENP--KFSSVSWSD--DGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEETTT--SSEEEEEEEETTSSEEEEEEEETTTT-------EEEEEEEEEE--ESEEEEECT--TSSEEEEEECSTTT
T ss_pred eeeeECCC--CCEEEEEecCCCCceEEEEEEECCCC-------cCcCCccccc--ccceEEEeC--CCCEEEEEEeCccc
Confidence 35788899 9887754 3344 5899999776 44432 2321 122389988 877665555333
Q ss_pred ---------cEEEEEecCc
Q 026295 132 ---------HVKVYELLDP 141 (240)
Q Consensus 132 ---------~v~iw~~~~~ 141 (240)
.|..|.+.++
T Consensus 194 ~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-
T ss_pred ccccCCCCcEEEEEECCCC
Confidence 3666776653
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.32 E-value=0.11 Score=42.33 Aligned_cols=110 Identities=20% Similarity=0.361 Sum_probs=71.6
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeecc
Q 026295 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVED 91 (240)
Q Consensus 13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~ 91 (240)
....|-+.+.-++.++.+..+..||-.+ +...... .++...+++|... ++.++ .+-..+.+.+||+...-
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag------q~~le~n-~tg~aldm~wDke--gdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG------QVILELN-PTGKALDMAWDKE--GDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc------ceecccC-CchhHhhhhhccc--cchhhhhhhcCCCeeechhhhhh
Confidence 3456778776688888888999998763 2222222 2455667888776 66544 44557789999997632
Q ss_pred CCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 92 AQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 92 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
.+++.. ....-.-+.|++ ....++.+...|.+.|++..+.
T Consensus 109 --------tqqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgts 149 (615)
T KOG2247|consen 109 --------TQQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTS 149 (615)
T ss_pred --------HHHHhccCcchHHHHhhcc--CCccccccccccceEEEeccch
Confidence 222221 111122277887 7778888888999999998763
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.01 E-value=27 Score=27.49 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=47.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----eEEEEEeeec
Q 026295 20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG----SLLLWEEIVE 90 (240)
Q Consensus 20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~ 90 (240)
+++..+.|+.. ..+..||+... +|+.+..+.... .......... +.+.+.|+.++ .+.+||...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~-r~~~~~~~~~--~~iYv~GG~~~~~~~~~~~yd~~~- 195 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ---EWFELPDFPGEP-RVQPVCVKLQ--NELYVFGGGSNIAYTDGYKYSPKK- 195 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC---CeeECCCCCCCC-CCcceEEEEC--CEEEEEcCCCCccccceEEEecCC-
Confidence 45666666642 35777887644 676665443211 1111222234 66777776654 245677654
Q ss_pred cCCCcccEEEEEeeeccc-----cEEeEEEeecCCCcEEEEEeCC
Q 026295 91 DAQPLQWKLCKSFESTST-----QVLDVQFGVSSTSLKLVAAYSD 130 (240)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d 130 (240)
..|..+..+..... ....+.. . ++.+++.|+.+
T Consensus 196 ----~~W~~~~~~~~~~~p~~~~~~~~~~~-~--~~~iyv~GG~~ 233 (323)
T TIGR03548 196 ----NQWQKVADPTTDSEPISLLGAASIKI-N--ESLLLCIGGFN 233 (323)
T ss_pred ----CeeEECCCCCCCCCceeccceeEEEE-C--CCEEEEECCcC
Confidence 35665544321001 1111222 1 46677777765
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.43 E-value=28 Score=27.23 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=69.8
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED 91 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 91 (240)
+..+.++ +++...+..+.-++|.|+..+..+ .++..+.. .+..+++.. . |++...+..|.-+.+.|+....
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP--~~~~~lnt-~gyaygv~v--s--Gn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSP--TLIGFLNT-DGYAYGVYV--S--GNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCc--ceeccccC-CceEEEEEe--c--CCEEEEeeccCcEEEEECCCCC
Confidence 3344554 455666667777999999876533 33333332 233444444 3 7788787766667778887653
Q ss_pred CCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 92 AQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
.. .............+.++. .|++-..+..|+-+.+-|+..+
T Consensus 160 sP----~lagrya~~~~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 160 SP----QLAGRYALPGGDTHDVAI----SGNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred Cc----eeeeeeccCCCCceeEEE----ecCeEEEEEeCCCeEEEEccCC
Confidence 21 333344444455566766 5667777778888999999875
No 460
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.29 E-value=4.7 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.070 Sum_probs=22.7
Q ss_pred ceEEEEECC----CCCEEEEEeCCCcEEEEeCCC
Q 026295 11 GTTSSSWNY----CGQRLATGSTDGTLSIFDSPD 40 (240)
Q Consensus 11 ~v~~~~~s~----~~~~l~~~~~d~~i~iw~~~~ 40 (240)
.+..++++. +..+|++-+.|+++|+||+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t 249 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET 249 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCC
Confidence 455566666 668999999999999999983
No 461
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.27 E-value=44 Score=29.41 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSP 39 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~ 39 (240)
.++.|..+.|..+++.+++.-.+|.|.+||..
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 45689999999999999999999999999994
No 462
>PRK13684 Ycf48-like protein; Provisional
Probab=79.03 E-value=31 Score=27.52 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=64.3
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
..++++.+.++++.++.+ ..|.+++=..+... +++.+..- ......+.++.+.++ +..++. +.+|.+. ....
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~--~~~~~~-G~~G~v~-~S~d 287 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTP--GEIWAG-GGNGTLL-VSKD 287 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC--ccccccCCccccccceeeEEEcCC--CCEEEE-cCCCeEE-EeCC
Confidence 357888899988877765 45766432222211 44432211 011234778889887 775554 4567654 2332
Q ss_pred eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEe
Q 026295 89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYEL 138 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~ 138 (240)
.+ ..|+.+............+.|.. ++. ....+..|.|.-|+-
T Consensus 288 ~G----~tW~~~~~~~~~~~~~~~~~~~~--~~~-~~~~G~~G~il~~~~ 330 (334)
T PRK13684 288 GG----KTWEKDPVGEEVPSNFYKIVFLD--PEK-GFVLGQRGVLLRYVG 330 (334)
T ss_pred CC----CCCeECCcCCCCCcceEEEEEeC--CCc-eEEECCCceEEEecC
Confidence 22 56666543222334677777765 555 455666788876653
No 463
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.47 E-value=32 Score=27.45 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=71.0
Q ss_pred CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe----------cCCeEEEEEeeeccCCCcccEEE
Q 026295 31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC----------SDGSLLLWEEIVEDAQPLQWKLC 100 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~ 100 (240)
+.+.|+|.+ +.+.+..+.. +-.-.+..+|+ ++.++++. ..-.|.+||..+. .+.
T Consensus 17 ~rv~viD~d-----~~k~lGmi~~--g~~~~~~~spd--gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-------~~~ 80 (342)
T PF06433_consen 17 SRVYVIDAD-----SGKLLGMIDT--GFLGNVALSPD--GKTIYVAETFYSRGTRGERTDVVEIWDTQTL-------SPT 80 (342)
T ss_dssp EEEEEEETT-----TTEEEEEEEE--ESSEEEEE-TT--SSEEEEEEEEEEETTEEEEEEEEEEEETTTT-------EEE
T ss_pred ceEEEEECC-----CCcEEEEeec--ccCCceeECCC--CCEEEEEEEEEeccccccceeEEEEEecCcC-------ccc
Confidence 468888887 4466665553 33445677898 88777642 2336889998776 666
Q ss_pred EEeeeccc-cE------EeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295 101 KSFESTST-QV------LDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA 171 (240)
Q Consensus 101 ~~~~~~~~-~v------~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 171 (240)
..+.-... .. ..++++. ++++++... -...|.|-|+.. .+...++....
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~------~kvv~ei~~PG-------------- 138 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAA------KKVVGEIDTPG-------------- 138 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTT------TEEEEEEEGTS--------------
T ss_pred ceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCC------CceeeeecCCC--------------
Confidence 65543322 11 2344554 666555443 223466666654 44454443321
Q ss_pred eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
|..--|.+.. -|.+-+.| |++.-..++.
T Consensus 139 C~~iyP~~~~----~F~~lC~D-----Gsl~~v~Ld~ 166 (342)
T PF06433_consen 139 CWLIYPSGNR----GFSMLCGD-----GSLLTVTLDA 166 (342)
T ss_dssp EEEEEEEETT----EEEEEETT-----SCEEEEEETS
T ss_pred EEEEEecCCC----ceEEEecC-----CceEEEEECC
Confidence 2333343321 35555556 7777777653
No 464
>PRK10115 protease 2; Provisional
Probab=77.64 E-value=52 Score=29.34 Aligned_cols=69 Identities=4% Similarity=-0.183 Sum_probs=39.6
Q ss_pred ceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEE-eEeeecCccEEEEEEcCCCCCCEEEEEecC-----
Q 026295 11 GTTSSSWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCN-LKTKVHAGAILKVVWVPPEFGDAVACICSD----- 79 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----- 79 (240)
.+..+.++|+|++|+.+... ..|++.|+. ++..+ ..+.. .-..++|.++ ++.|+-...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-----tg~~l~~~i~~---~~~~~~w~~D--~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-----TGNWYPELLDN---VEPSFVWAND--SWTFYYVRKHPVTLL 197 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-----CCCCCCccccC---cceEEEEeeC--CCEEEEEEecCCCCC
Confidence 46678899999988876433 247777776 22211 11111 1146999988 7755544332
Q ss_pred -CeEEEEEeee
Q 026295 80 -GSLLLWEEIV 89 (240)
Q Consensus 80 -~~v~iwd~~~ 89 (240)
..|..+++.+
T Consensus 198 ~~~v~~h~lgt 208 (686)
T PRK10115 198 PYQVWRHTIGT 208 (686)
T ss_pred CCEEEEEECCC
Confidence 2455555543
No 465
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=76.90 E-value=38 Score=27.45 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=15.7
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEe
Q 026295 20 CGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKT 52 (240)
Q Consensus 20 ~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~ 52 (240)
+++..+.++. +..+.++|+... ...|..+..+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~-~~~W~~l~~~ 70 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAP-SKGWTKIAAF 70 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCC-CCCeEECCcC
Confidence 4555554443 445667777521 1145554444
No 466
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=76.62 E-value=6.4 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=19.3
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEe
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFD 37 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~ 37 (240)
+.|.+++.. ..+++.+...+.+|||.
T Consensus 2 E~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 457777755 35888888889999984
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.28 E-value=31 Score=26.13 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=58.3
Q ss_pred EECCCCCEEEEEeCC---CcEEEEeCCC-CCCCcEEEEe-EeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEEeee
Q 026295 16 SWNYCGQRLATGSTD---GTLSIFDSPD-PSSSSFTCNL-KTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWEEIV 89 (240)
Q Consensus 16 ~~s~~~~~l~~~~~d---~~i~iw~~~~-~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~ 89 (240)
.|-++|++|.+|+.. ..+++++... .....+.... .+....- --.+.--++ |+.|+.|+... +..+|....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW-YpT~~~L~D--G~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW-YPTATTLPD--GRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc-cccceECCC--CCEEEEeCcCCCcccccCCcc
Confidence 466899999998742 4588887653 1111222211 1221111 222333477 99888887764 333444321
Q ss_pred ccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295 90 EDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD 140 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 140 (240)
.......+..+.... ....---.+...| +|++|+.+..+. .|||..+
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llP--dG~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLP--DGNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred CCCCceeeecchhhhccCccccCceEEEcC--CCCEEEEEcCCc--EEEeCCC
Confidence 111111111111111 1112223456677 999888777654 5678876
No 468
>PLN02193 nitrile-specifier protein
Probab=74.56 E-value=51 Score=27.75 Aligned_cols=62 Identities=6% Similarity=0.082 Sum_probs=33.9
Q ss_pred CCEEEEEecC----CeEEEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCC------------
Q 026295 70 GDAVACICSD----GSLLLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSD------------ 130 (240)
Q Consensus 70 ~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d------------ 130 (240)
+++++.++.+ ..+.+||+.+ ..|..+.... ........+.+ ++.+++.|+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t-----~~W~~~~~~g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQ-----DKWTQVETFGVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCC-----CEEEEeccCCCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccc
Confidence 5666666654 3577888765 3576665431 11122222322 56667777743
Q ss_pred --CcEEEEEecC
Q 026295 131 --GHVKVYELLD 140 (240)
Q Consensus 131 --g~v~iw~~~~ 140 (240)
..+.+||+.+
T Consensus 400 ~~ndv~~~D~~t 411 (470)
T PLN02193 400 LTDGTFALDTET 411 (470)
T ss_pred eeccEEEEEcCc
Confidence 2467777765
No 469
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=73.83 E-value=75 Score=29.34 Aligned_cols=123 Identities=16% Similarity=0.059 Sum_probs=67.0
Q ss_pred cccceEEEEECCCC---C---EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecC
Q 026295 8 LDKGTTSSSWNYCG---Q---RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSD 79 (240)
Q Consensus 8 h~~~v~~~~~s~~~---~---~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d 79 (240)
.+..|.|+.++|-| + +++.|..+..+.+--..... ...+...+.+ -...|.-..+-.+ ..+|.++..|
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~--~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgd 604 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL--ILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGD 604 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc--ceeeeeccCCCccchheeeEEeecc--ceEEEEEcCC
Confidence 44589999999842 2 79999888777665443221 1111111221 1123444455444 7899999999
Q ss_pred CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
|.+..|.+....+.. ...+...-...++.--.|+. .+..-+.+..|.-..+|-.+
T Consensus 605 G~l~~fv~d~~tg~l---sd~Kk~~lGt~P~~Lr~f~s--k~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 605 GALLYFVLDINTGQL---SDRKKVTLGTQPISLRTFSS--KSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ceEEEEEEEcccceE---ccccccccCCCCcEEEEEee--CCceEEEEeCCCCEEEEecC
Confidence 999888776553210 01111111234555556655 44333344445556667655
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.79 E-value=52 Score=27.07 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=63.0
Q ss_pred cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEE--EEeEeee--cCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFT--CNLKTKV--HAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
..+..+.|.+++..++++ .+|.+.. ...... +++ ....... -...+.++.|.++ +..+++ +..|.+...
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~--~~~~~~f~~~~~~~~~~~l~~v~~~~d--~~~~a~-G~~G~v~~s 353 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGL--TEEDFDFEEADIKSRGFGILDVGYRSK--KEAWAA-GGSGILLRS 353 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEEE-ecCCCC--cccccceeecccCCCCcceEEEEEcCC--CcEEEE-ECCCcEEEe
Confidence 357788999888877766 5566543 222111 111 1122211 1234888999876 665555 567766544
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
.- .+ ..|+....-..-......+.|.+ +++ ....+.+|.|.-|
T Consensus 354 ~D-~G----~tW~~~~~~~~~~~~ly~v~f~~--~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 354 TD-GG----KSWKRDKGADNIAANLYSVKFFD--DKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CC-CC----cceeEccccCCCCcceeEEEEcC--CCc-eEEEeCCcEEEEe
Confidence 32 22 45666543333345677899866 555 5555667876544
No 471
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.71 E-value=70 Score=28.53 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=43.0
Q ss_pred EEECCCCCEEEEEeCC----------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295 15 SSWNYCGQRLATGSTD----------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL 84 (240)
Q Consensus 15 ~~~s~~~~~l~~~~~d----------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i 84 (240)
++..|.|.-+|..-.+ -.|+||++. ++++..+.-..+.+-.+.|+.+ .-|++...+|++++
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s------G~lL~~~~w~~~~lI~mgWs~~---eeLI~v~k~g~v~V 108 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS------GQLLGRILWKHGELIGMGWSDD---EELICVQKDGTVHV 108 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc------ccchHHHHhcCCCeeeecccCC---ceEEEEeccceEEE
Confidence 4445656555555444 247777775 3444443323347779999775 55777789999999
Q ss_pred EEeee
Q 026295 85 WEEIV 89 (240)
Q Consensus 85 wd~~~ 89 (240)
|++-.
T Consensus 109 y~~~g 113 (829)
T KOG2280|consen 109 YGLLG 113 (829)
T ss_pred eecch
Confidence 99865
No 472
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=71.75 E-value=40 Score=25.27 Aligned_cols=182 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred EEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE-EEEEe
Q 026295 26 TGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK-LCKSF 103 (240)
Q Consensus 26 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~ 103 (240)
+-..|+++++........+.+......-+. -.....|.++|+ +.+.+.- .+ .++.-.........|. .-..+
T Consensus 2 ~~~~d~~~~~~~~p~~~~~n~~~~a~~iG~gw~~~~~i~~~P~--g~lY~I~-~~---~lY~~~~~~~~~~~~~~~~~~I 75 (229)
T PF14517_consen 2 AVDEDGTLRKGPPPQDGGDNWSDRAITIGSGWNNFRDIAAGPN--GRLYAIR-ND---GLYRGSPSSSGGNTWDSGSKQI 75 (229)
T ss_dssp EEETT-EEEEES---STT--HHHHSEEEESS-TT-SEEEE-TT--S-EEEEE-TT---EEEEES---STT--HHHH-EEE
T ss_pred cccccccEEecCCCCCCCCCccchhhhcCccccccceEEEcCC--ceEEEEE-CC---ceEEecCCccCcccccccCccc
Confidence 456789999888765432222111111122 133567788888 7766654 33 3343311101111111 11122
Q ss_pred eec-cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE--Eeeeecccceeeccccccce-eeeEEEeCCC
Q 026295 104 EST-STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL--QAEFQNAIDSVTMFRKASCI-SASISWNPQK 179 (240)
Q Consensus 104 ~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~~v~~~p~~ 179 (240)
... =.....|.++| +|. |.+...+|++.-+..-.. ....|.. -..+ +...+. ...+-+.|++
T Consensus 76 g~g~W~~F~~i~~d~--~G~-LYaV~~~G~lyR~~~~~~-~~~~W~~~~~~~i----------G~~GW~~f~~vfa~~~G 141 (229)
T PF14517_consen 76 GDGGWNSFKFIFFDP--TGV-LYAVTPDGKLYRHPRPTN-GSDNWIGGSGKKI----------GGTGWNDFDAVFAGPNG 141 (229)
T ss_dssp E-S-GGG-SEEEE-T--TS--EEEEETT-EEEEES---S-TT--HHH-HSEEE----------E-SSGGGEEEEEE-TTS
T ss_pred ccCcccceeEEEecC--Ccc-EEEeccccceeeccCCCc-cCcchhhccceec----------ccCCCccceEEEeCCCc
Confidence 111 12445788887 777 666677888844433221 1112211 1111 001111 1267788888
Q ss_pred CCCCCceEEEEecCCCCCCCeEEEE-EeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295 180 GENQGSSFVLGFNSDTPQLNSSKVW-EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239 (240)
Q Consensus 180 ~~~~~~~l~~~~~dd~~~~~~i~iw-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 239 (240)
. +.++. .| +.+.-+ ........|.....+....+- ..-.-|.|+|++.
T Consensus 142 v-----LY~i~-~d-----g~~~~~~~p~~~~~~W~~~s~~v~~~gw-~~~~~i~~~~~g~ 190 (229)
T PF14517_consen 142 V-----LYAIT-PD-----GRLYRRYRPDGGSDRWLSGSGLVGGGGW-DSFHFIFFSPDGN 190 (229)
T ss_dssp ------EEEEE-TT-----E-EEEE---SSTT--HHHH-EEEESSSG-GGEEEEEE-TTS-
T ss_pred c-----EEEEc-CC-----CceEEeCCCCCCCCccccccceeccCCc-ccceEEeeCCCCc
Confidence 5 44444 55 633333 444555566554333332222 1356678888753
No 473
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.98 E-value=39 Score=30.41 Aligned_cols=73 Identities=7% Similarity=0.107 Sum_probs=45.2
Q ss_pred CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295 56 AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135 (240)
Q Consensus 56 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i 135 (240)
..+|..+.+..+ ++.++.+|.|.++...+.- .+|+ ......+...|+.+.... ++-+++..+.| .+++
T Consensus 626 ~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~---~~~~-leahqee~~~Vthm~~~~--~gVwvafasG~-~~rl 693 (925)
T KOG3522|consen 626 SLPVRSLAFQED-----FVWASEGGCVHVIPSTTFI---RSWD-LEAHQEEAHSVTHMLYLD--NGVWVAFASGD-EERL 693 (925)
T ss_pred Cccccchhhhhc-----eeeeecCCceEEEechhcc---ccch-hHHHHhhcceEEEEEeeC--CceEEEEcCCC-EEEE
Confidence 456777777554 6677789999999876531 1111 122234557788888866 66666666554 4555
Q ss_pred EEecC
Q 026295 136 YELLD 140 (240)
Q Consensus 136 w~~~~ 140 (240)
++..+
T Consensus 694 fhtet 698 (925)
T KOG3522|consen 694 FHTET 698 (925)
T ss_pred ecccc
Confidence 55554
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.80 E-value=48 Score=25.80 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=57.6
Q ss_pred cccceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCCCCcEEEEeE-e-eecCccEEEEEEcCCCCCCEEEEEe-c
Q 026295 8 LDKGTTSSSWNYCGQRLATGS------TDGTLSIFDSPDPSSSSFTCNLK-T-KVHAGAILKVVWVPPEFGDAVACIC-S 78 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~-~-~~h~~~v~~~~~~~~~~~~~l~s~~-~ 78 (240)
..+.|+.+.|..+.++++.|. ....+-.||.... +|..+.. . ..-.++|..+.+......++.+.|. .
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~---~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~ 111 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ---TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA 111 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC---eeeecCCcccccCCCcEEEEEeeccCCceEEEeceec
Confidence 457899999987777777775 3456778888744 4443332 1 1123678888875442234444443 3
Q ss_pred CC--eEEEEEeeeccCCCcccEEEEE-eeeccccEEeEEEee
Q 026295 79 DG--SLLLWEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGV 117 (240)
Q Consensus 79 d~--~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 117 (240)
++ .|.-||= ..|..+.. .......|..+.+-|
T Consensus 112 ~g~~~l~~~dG-------s~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 112 NGSTFLMKYDG-------SSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CCCceEEEEcC-------CceEeccccccCCCCEEEEEEEEe
Confidence 34 4555542 34565555 333345666666655
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.36 E-value=7 Score=18.55 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=18.9
Q ss_pred eEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295 186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWL 214 (240)
Q Consensus 186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~ 214 (240)
.+.++..+ +.+..+|..+++..|.
T Consensus 8 ~v~~~~~~-----g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTD-----GTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCC-----CEEEEEEcccCcEEEE
Confidence 56677777 9999999988876664
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.86 E-value=11 Score=33.26 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=44.4
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI 88 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 88 (240)
+..++++.-+|-|+.++.++.||.|++|+.....+ ..+... ..+-..+.|... | +++...|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q---ski~~~---~~p~~nlv~tnh--g--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ---SKICEE---AKPKENLVFTNH--G--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch---hhhhhh---cCCccceeeecc--c--eEEEeccchhheeecc
Confidence 34677888889999999999999999999873311 111111 223334555443 4 4555567777667543
No 477
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.25 E-value=1e+02 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=25.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSP 39 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~ 39 (240)
....++|+|...++|.+...|.|++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 45578999999999999999999999876
No 478
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=68.53 E-value=34 Score=26.87 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=45.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc-----EEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-----ILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
-|++|....+|.+|++...-.+|.+.+.. +++.+-.+.+.... -...+|-++ .+++-....++.|.++
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~-----tG~I~W~lgG~~~~df~~~~~~f~~QHd--ar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPS-----TGKIIWRLGGKRNSDFTLPATNFSWQHD--ARFLNESNDDGTISLF 217 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECC-----CCcEEEEeCCCCCCcccccCCcEeeccC--CEEeccCCCCCEEEEE
Confidence 47788888899999999888888888766 55666666543111 112344344 4444445567788888
Q ss_pred Ee
Q 026295 86 EE 87 (240)
Q Consensus 86 d~ 87 (240)
|-
T Consensus 218 DN 219 (299)
T PF14269_consen 218 DN 219 (299)
T ss_pred cC
Confidence 86
No 479
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=68.44 E-value=16 Score=30.75 Aligned_cols=58 Identities=9% Similarity=0.219 Sum_probs=0.0
Q ss_pred EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
+++.++.-|-|++||--.. ..-..+++....|..+.... +|.++++.+.. .+.+-|++
T Consensus 575 yIa~as~kGDirLyDRig~-------rAKtalP~lG~aIk~idvta--~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGK-------RAKTALPGLGDAIKHIDVTA--NGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhcc-------hhhhcCcccccceeeeEeec--CCcEEEEeecc-eEEEEecc
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.29 E-value=57 Score=25.73 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=71.0
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeee-----cCccEEEEEEcCCC----------CCCEEE
Q 026295 12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKV-----HAGAILKVVWVPPE----------FGDAVA 74 (240)
Q Consensus 12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~-----h~~~v~~~~~~~~~----------~~~~l~ 74 (240)
-+.|+|+|.+.+-++....+...+||.....+. ...++-++.. -....+.+.|+... ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 357999999988888888899999998622100 1122333321 12346677776430 012367
Q ss_pred EEecCCeEEEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEec
Q 026295 75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELL 139 (240)
Q Consensus 75 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~ 139 (240)
.++.||+|.-|....... ..-.....+.. .......+++.....+.+|..+. ..++|.+||-.
T Consensus 105 f~tEdGTisaW~p~v~~t--~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTT--RMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcc--cccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 788999999998543210 00001122221 12333567776533355555444 67899999854
No 481
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=68.25 E-value=1.1e+02 Score=29.05 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=76.9
Q ss_pred CEEEEEe-----C----CCcEEEEeCCC----CCCC-cEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295 22 QRLATGS-----T----DGTLSIFDSPD----PSSS-SFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDGSLLLW 85 (240)
Q Consensus 22 ~~l~~~~-----~----d~~i~iw~~~~----~~~~-~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw 85 (240)
.+|+.|. + .|.+.|||+-. ++.+ +...+..+ +..+++|..++=.. |.++.+. .-.|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~---G~l~~~~--GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVR---GHLLSSQ--GQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEec---cEEEEcc--CcEEEEE
Confidence 4777774 2 37899999742 1111 11111111 24567887777522 6655443 3479999
Q ss_pred EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295 86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK 165 (240)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 165 (240)
+++..+. -.--.|....--+.++.. -.++++.|..-..|.+.-.... . ..+. -+..... .
T Consensus 1122 ~l~r~~~-----ligVaFiD~~~yv~s~~~----vknlIl~gDV~ksisfl~fqee--p--~rls-L~srd~~------~ 1181 (1366)
T KOG1896|consen 1122 KLDRDSE-----LIGVAFIDLPLYVHSMKV----VKNLILAGDVMKSISFLGFQEE--P--YRLS-LLSRDFE------P 1181 (1366)
T ss_pred EeccCCc-----ceeeEEeccceeEEehhh----hhhheehhhhhhceEEEEEccC--c--eEEE-EeecCCc------h
Confidence 9954321 111122221122222211 2345566655555655544320 0 1111 1111111 0
Q ss_pred ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295 166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH 210 (240)
Q Consensus 166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~ 210 (240)
. .+.++.|--++. ...++++..+ +.|++|-+....
T Consensus 1182 l--~v~s~EFLVdg~---~L~flvsDa~-----rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1182 L--NVYSTEFLVDGS---NLSFLVSDAD-----RNIHVYMYAPEN 1216 (1366)
T ss_pred h--hceeeeeEEcCC---eeEEEEEcCC-----CcEEEEEeCCCC
Confidence 1 123677877776 5578888888 999999886543
No 482
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=67.94 E-value=15 Score=32.64 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=41.9
Q ss_pred ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295 57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136 (240)
Q Consensus 57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 136 (240)
..+.++.-.|. ++-++.++.||+|++|+...... ..+.+ ...+-..+.|.. .| |+++++|..+.-|
T Consensus 15 e~~~aiqshp~--~~s~v~~~~d~si~lfn~~~r~q-----ski~~---~~~p~~nlv~tn--hg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 15 EFTTAIQSHPG--GQSFVLAHQDGSIILFNFIPRRQ-----SKICE---EAKPKENLVFTN--HG--LVTATSDRRALAW 80 (1636)
T ss_pred ceeeeeeecCC--CceEEEEecCCcEEEEeecccch-----hhhhh---hcCCccceeeec--cc--eEEEeccchhhee
Confidence 34566777787 89999999999999999865311 11111 112233455643 33 5666667766666
Q ss_pred Ee
Q 026295 137 EL 138 (240)
Q Consensus 137 ~~ 138 (240)
.-
T Consensus 81 ~~ 82 (1636)
T KOG3616|consen 81 KE 82 (1636)
T ss_pred ec
Confidence 54
No 483
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=67.58 E-value=67 Score=26.25 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=31.0
Q ss_pred EEcCCCCCCEEE-EEecCCeEEEE--EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 63 VWVPPEFGDAVA-CICSDGSLLLW--EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 63 ~~~~~~~~~~l~-s~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
+|.++ |+.|+ .+..|+.-.+| |+.++ +..+-..+.........++| +...++-.-....|.-.|+.
T Consensus 42 ~ft~d--G~kllF~s~~dg~~nly~lDL~t~-------~i~QLTdg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDD--GRKLLFASDFDGNRNLYLLDLATG-------EITQLTDGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TT--S-EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETT
T ss_pred CcCCC--CCEEEEEeccCCCcceEEEEcccC-------EEEECccCCCCCccceEEec--CCCeEEEEECCCeEEEEECC
Confidence 56666 75544 45556654444 55443 33333232223333566677 66766655555678777887
Q ss_pred C
Q 026295 140 D 140 (240)
Q Consensus 140 ~ 140 (240)
+
T Consensus 111 T 111 (386)
T PF14583_consen 111 T 111 (386)
T ss_dssp T
T ss_pred c
Confidence 6
No 484
>PLN02153 epithiospecifier protein
Probab=67.18 E-value=62 Score=25.74 Aligned_cols=40 Identities=5% Similarity=0.116 Sum_probs=20.3
Q ss_pred eEEEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeC
Q 026295 81 SLLLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYS 129 (240)
Q Consensus 81 ~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~ 129 (240)
.+.+||+.. ..|..+... .........+.+ ++.+++.|+.
T Consensus 218 ~v~~yd~~~-----~~W~~~~~~g~~P~~r~~~~~~~~----~~~iyv~GG~ 260 (341)
T PLN02153 218 AVQFFDPAS-----GKWTEVETTGAKPSARSVFAHAVV----GKYIIIFGGE 260 (341)
T ss_pred ceEEEEcCC-----CcEEeccccCCCCCCcceeeeEEE----CCEEEEECcc
Confidence 577777754 456765432 111122222222 5666777774
No 485
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=65.80 E-value=59 Score=24.99 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=70.1
Q ss_pred eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee--
Q 026295 28 STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES-- 105 (240)
Q Consensus 28 ~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-- 105 (240)
=.++...+||.. +.+.+.++.- .+.=+.++. + ++.|+.+.....+..+|..+- +....+.-
T Consensus 107 Wk~~~~f~yd~~-----tl~~~~~~~y-~~EGWGLt~--d--g~~Li~SDGS~~L~~~dP~~f-------~~~~~i~V~~ 169 (264)
T PF05096_consen 107 WKEGTGFVYDPN-----TLKKIGTFPY-PGEGWGLTS--D--GKRLIMSDGSSRLYFLDPETF-------KEVRTIQVTD 169 (264)
T ss_dssp SSSSEEEEEETT-----TTEEEEEEE--SSS--EEEE--C--SSCEEEE-SSSEEEEE-TTT--------SEEEEEE-EE
T ss_pred ecCCeEEEEccc-----cceEEEEEec-CCcceEEEc--C--CCEEEEECCccceEEECCccc-------ceEEEEEEEE
Confidence 355788889987 7777777753 456667773 4 555666544557777775432 34443331
Q ss_pred ---ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc--cceeeccccc---cceeeeEEEeC
Q 026295 106 ---TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA--IDSVTMFRKA---SCISASISWNP 177 (240)
Q Consensus 106 ---~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~---~~~~~~v~~~p 177 (240)
.-..++.+.|. +|...|=.-....|...|..+ ++....+... ...+...... ..--|.++|+|
T Consensus 170 ~g~pv~~LNELE~i---~G~IyANVW~td~I~~Idp~t------G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 170 NGRPVSNLNELEYI---NGKIYANVWQTDRIVRIDPET------GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp TTEE---EEEEEEE---TTEEEEEETTSSEEEEEETTT-------BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred CCEECCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCC------CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence 22345567774 576666565666777778776 4444433211 0000000000 11225899999
Q ss_pred CCCCCCCceEEEEe
Q 026295 178 QKGENQGSSFVLGF 191 (240)
Q Consensus 178 ~~~~~~~~~l~~~~ 191 (240)
... .+++||=
T Consensus 241 ~~~----~l~vTGK 250 (264)
T PF05096_consen 241 ETD----RLFVTGK 250 (264)
T ss_dssp TTT----EEEEEET
T ss_pred CCC----EEEEEeC
Confidence 885 2667763
No 486
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.64 E-value=1.2e+02 Score=27.62 Aligned_cols=18 Identities=6% Similarity=0.163 Sum_probs=15.6
Q ss_pred CeEEEEEeecCCCCccee
Q 026295 199 NSSKVWEFDEAHNRWLPV 216 (240)
Q Consensus 199 ~~i~iw~~~~~~~~~~~~ 216 (240)
|.|+-||..+++..|...
T Consensus 336 G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cEEEEEECCCCcEeeEEe
Confidence 899999999999888653
No 487
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=61.56 E-value=1.2e+02 Score=28.85 Aligned_cols=116 Identities=10% Similarity=0.014 Sum_probs=60.9
Q ss_pred cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295 8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE 87 (240)
Q Consensus 8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~ 87 (240)
..++|..++ .-+| +|+++.. ..|.||+++... ....+.-+ .-+++-....-- +++++.|.--..|.+...
T Consensus 1096 ~KGtVsavc-eV~G-~l~~~~G-qKI~v~~l~r~~--~ligVaFi---D~~~yv~s~~~v--knlIl~gDV~ksisfl~f 1165 (1366)
T KOG1896|consen 1096 QKGTVSAVC-EVRG-HLLSSQG-QKIIVRKLDRDS--ELIGVAFI---DLPLYVHSMKVV--KNLILAGDVMKSISFLGF 1165 (1366)
T ss_pred cccceEEEE-Eecc-EEEEccC-cEEEEEEeccCC--cceeeEEe---ccceeEEehhhh--hhheehhhhhhceEEEEE
Confidence 445666554 3345 4555544 478899985321 11111111 122222222222 566666655555666555
Q ss_pred eeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295 88 IVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~ 139 (240)
+... ..+.-+. ...-.+.++.|--......++++..++.|++|-..
T Consensus 1166 qeep------~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1166 QEEP------YRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred ccCc------eEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 4321 1111121 23456788888774345578899999999887654
No 488
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=60.20 E-value=1.3e+02 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=25.1
Q ss_pred ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295 108 TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP 141 (240)
Q Consensus 108 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~ 141 (240)
..|.+++-.. -+.+++....||+|.++|..+-
T Consensus 260 ~~V~si~~~~--~~~~v~~~~~DGsI~~~dr~t~ 291 (753)
T PF11635_consen 260 KRVVSITSPE--LDIVVAFAFSDGSIEFRDRNTM 291 (753)
T ss_pred CeEEEEEecc--cCcEEEEEEcCCeEEEEecCcc
Confidence 4566666544 7778999999999999998873
No 489
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.12 E-value=0.91 Score=37.40 Aligned_cols=104 Identities=7% Similarity=0.140 Sum_probs=63.7
Q ss_pred ceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295 11 GTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV 89 (240)
Q Consensus 11 ~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 89 (240)
....++|+.++.. ++.+-..+.+.+|++...- + +.+..-..|.. .-+.|++. ...++.+...+.+.|++...
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n~ey--t-qqLE~gg~~s~--sll~wsKg--~~el~ig~~~gn~viynhgt 148 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--T-QQLESGGTSSK--SLLAWSKG--TPELVIGNNAGNIVIYNHGT 148 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhhhhh--H-HHHhccCcchH--HHHhhccC--CccccccccccceEEEeccc
Confidence 4456788888864 4445667899999997431 1 11111111222 23778887 77788887888999998754
Q ss_pred ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295 90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG 131 (240)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 131 (240)
. +.+...-.|...+.++++.+ .+. .+.++.|.
T Consensus 149 s-------R~iiv~Gkh~RRgtq~av~l--Ed~-vil~dcd~ 180 (615)
T KOG2247|consen 149 S-------RRIIVMGKHQRRGTQIAVTL--EDY-VILCDCDN 180 (615)
T ss_pred h-------hhhhhhcccccceeEEEecc--cce-eeecCcHH
Confidence 3 33333333677888889977 555 44554443
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=58.96 E-value=1e+02 Score=25.30 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=79.7
Q ss_pred CcEEEEeCCCCCCCcEEEEeE----eeecCccEEEEEE--cCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEe
Q 026295 31 GTLSIFDSPDPSSSSFTCNLK----TKVHAGAILKVVW--VPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSF 103 (240)
Q Consensus 31 ~~i~iw~~~~~~~~~~~~~~~----~~~h~~~v~~~~~--~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 103 (240)
..|++|.+.... +..+.+.. +..--..++.+|. ++. .|. +++....+|.+..|.+..........+.++.|
T Consensus 127 n~l~~f~id~~~-g~L~~v~~~~~p~~~~~~e~yGlcly~~~~-~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 127 NSLRLFRIDPDT-GELTDVTDPAAPIATDLSEPYGLCLYRSPS-TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp -EEEEEEEETTT-TEEEE-CBTTC-EE-SSSSEEEEEEEE-TT-T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CeEEEEEecCCC-CcceEcCCCCcccccccccceeeEEeecCC-CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 469999886421 12222211 1111234677776 333 244 56667889999999987432222344677888
Q ss_pred eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEe--CCCCC
Q 026295 104 ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWN--PQKGE 181 (240)
Q Consensus 104 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~--p~~~~ 181 (240)
... ..+..+.... ...+|..+-.+.-|.-|+... .......++...... . ...-+..++.- +++.
T Consensus 205 ~~~-sQ~EGCVVDD--e~g~LYvgEE~~GIW~y~Aep-~~~~~~~~v~~~~g~--~------l~aDvEGlaly~~~~g~- 271 (381)
T PF02333_consen 205 KVG-SQPEGCVVDD--ETGRLYVGEEDVGIWRYDAEP-EGGNDRTLVASADGD--G------LVADVEGLALYYGSDGK- 271 (381)
T ss_dssp E-S-S-EEEEEEET--TTTEEEEEETTTEEEEEESSC-CC-S--EEEEEBSSS--S------B-S-EEEEEEEE-CCC--
T ss_pred cCC-CcceEEEEec--ccCCEEEecCccEEEEEecCC-CCCCcceeeeccccc--c------cccCccceEEEecCCCC-
Confidence 754 4778888876 556688888776555555442 111222333222111 0 11112245533 3332
Q ss_pred CCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295 182 NQGSSFVLGFNSDTPQLNSSKVWEFDEA 209 (240)
Q Consensus 182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~ 209 (240)
+ ||++++..+ ++..||+....
T Consensus 272 --g-YLivSsQG~----~sf~Vy~r~~~ 292 (381)
T PF02333_consen 272 --G-YLIVSSQGD----NSFAVYDREGP 292 (381)
T ss_dssp --E-EEEEEEGGG----TEEEEEESSTT
T ss_pred --e-EEEEEcCCC----CeEEEEecCCC
Confidence 3 566666544 89999998754
No 491
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=55.10 E-value=24 Score=17.75 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=15.3
Q ss_pred CCcEEEEEeCCCcEEEEEec
Q 026295 120 TSLKLVAAYSDGHVKVYELL 139 (240)
Q Consensus 120 ~~~~l~~~~~dg~v~iw~~~ 139 (240)
.+..+..++.||.+..+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 45568889999999988865
No 492
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=53.57 E-value=42 Score=19.27 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEecCCCCCCCeEEEEEeecCCCCcceeEee
Q 026295 186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL 219 (240)
Q Consensus 186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~ 219 (240)
.|+.-+.+ +.|+||.+........+.+++
T Consensus 31 ~Fav~~e~-----~~iKIfkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 31 HFAVVDED-----GQIKIFKYDEDTNEITLKKEF 59 (63)
T ss_dssp EEEEE-ET-----TEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecC-----CeEEEEEeCCCCCeEEEEEee
Confidence 57777777 999999999877666665544
No 493
>PRK13613 lipoprotein LpqB; Provisional
Probab=53.28 E-value=1.6e+02 Score=25.91 Aligned_cols=77 Identities=12% Similarity=-0.028 Sum_probs=45.0
Q ss_pred ceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEE--EEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEE
Q 026295 11 GTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFT--CNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLL 84 (240)
Q Consensus 11 ~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~i 84 (240)
.|..++.|+||-++|.-.. .+.|.|--+.....+... ....+..-...+.++.|..+ +.+++.+. .++...+
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~--~sL~Vlg~~~~~~~~v 533 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGD--SQLVVLGREEGGVQQA 533 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCC--CEEEEEeccCCCCcce
Confidence 7999999999988777544 356666555432221211 11222222345899999887 77666443 3334556
Q ss_pred EEeee
Q 026295 85 WEEIV 89 (240)
Q Consensus 85 wd~~~ 89 (240)
|.+..
T Consensus 534 ~~v~v 538 (599)
T PRK13613 534 RYVQV 538 (599)
T ss_pred EEEec
Confidence 66543
No 494
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=52.26 E-value=7.1 Score=33.70 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=45.7
Q ss_pred chhcccccceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCCCCcEEEEeEeeec-----CccEEEEEEcCCCCCCEEEEE
Q 026295 3 KAVATLDKGTTSSSWNYCGQRLATGSTDG-TLSIFDSPDPSSSSFTCNLKTKVH-----AGAILKVVWVPPEFGDAVACI 76 (240)
Q Consensus 3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~ 76 (240)
..++.|..++..++|.+.+..|++++-.| .|.++.+.............+..| ...+..++|+.. ...+..+
T Consensus 309 ~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~--s~~r~~g 386 (788)
T KOG2109|consen 309 RQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEV--STIRTAG 386 (788)
T ss_pred hheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhh--cceEeec
Confidence 34778999999999999999999998664 466776653211000111111111 122445677666 6666666
Q ss_pred ecCC
Q 026295 77 CSDG 80 (240)
Q Consensus 77 ~~d~ 80 (240)
+.+|
T Consensus 387 sc~G 390 (788)
T KOG2109|consen 387 SCEG 390 (788)
T ss_pred ccCC
Confidence 6555
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=51.50 E-value=76 Score=28.71 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=48.0
Q ss_pred ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-------------e------ecCccEEEEEEcCCCC
Q 026295 9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-------------K------VHAGAILKVVWVPPEF 69 (240)
Q Consensus 9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-------------~------~h~~~v~~~~~~~~~~ 69 (240)
.+.|.++.-...+..++.+-.||+|.++|.. +++.+... . .....+..++|||.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~-----t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-- 331 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRN-----TMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-- 331 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecC-----cchhhcccccccCCccccccccccccccccCCCCceEEECcc--
Confidence 3568888887888899999999999999976 33222221 0 11123445889998
Q ss_pred CCEEEEEecCCeEE
Q 026295 70 GDAVACICSDGSLL 83 (240)
Q Consensus 70 ~~~l~s~~~d~~v~ 83 (240)
+..++.-..++.+.
T Consensus 332 ~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 332 MCSLVQIDEDGKTK 345 (753)
T ss_pred cceEEEEecCCCce
Confidence 88888888888866
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=50.91 E-value=1.5e+02 Score=24.98 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=36.1
Q ss_pred CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeec
Q 026295 56 AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVS 118 (240)
Q Consensus 56 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~ 118 (240)
-.....|.|.|+ |.+|++--..|.|++++...... ..+..+. ........|+++|.
T Consensus 29 L~~Pw~maflPD--G~llVtER~~G~I~~v~~~~~~~-----~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPD--NQLWVTERATGKILRVNPETGEV-----KVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCC--CeEEEEEecCCEEEEEeCCCCce-----eeeecCCceeccCCCCceeeEEECCC
Confidence 455779999999 88777765468998887543311 1221111 13577889999983
No 497
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=50.58 E-value=1.1e+02 Score=23.42 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred ccceEEEEECC------CC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC-CCCEEEEEecCC
Q 026295 9 DKGTTSSSWNY------CG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE-FGDAVACICSDG 80 (240)
Q Consensus 9 ~~~v~~~~~s~------~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~d~ 80 (240)
...|+|++--. +. ..|+.|.++|.|.|.|.. ....+..+.--.-++.-.+.-.-. ..-.++.++.||
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~-----af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg 250 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQ-----AFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDG 250 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECch-----hheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCC
Confidence 34677775422 12 479999999999999988 455555555433333222211000 134566777888
Q ss_pred eEEE
Q 026295 81 SLLL 84 (240)
Q Consensus 81 ~v~i 84 (240)
.|.+
T Consensus 251 ~iy~ 254 (257)
T PF14779_consen 251 KIYT 254 (257)
T ss_pred EEEE
Confidence 7764
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=50.31 E-value=62 Score=24.57 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=27.5
Q ss_pred EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-C--CcEEEEEecC
Q 026295 83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-D--GHVKVYELLD 140 (240)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~v~iw~~~~ 140 (240)
.+||+.+.. ++++.. .....+.+-.+-+ +|.++.+|+. + ..+++++...
T Consensus 49 ~~yD~~tn~-----~rpl~v--~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 49 VEYDPNTNT-----FRPLTV--QTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEecCCCc-----EEeccC--CCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCC
Confidence 478887641 122221 1223444455667 9998888764 2 3477777644
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=49.92 E-value=56 Score=20.19 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295 171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE 208 (240)
Q Consensus 171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~ 208 (240)
+.+..+|++. +|.+++.-. +.|++|+.+.
T Consensus 57 NGI~~s~~~k-----~lyVa~~~~----~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKK-----YLYVASSLA----HSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCC-----EEEEEeccC----CeEEEEEecC
Confidence 4788999886 566665443 8999998754
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.84 E-value=18 Score=18.09 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295 187 FVLGFNSDTPQLNSSKVWEFDEAHNRWLP 215 (240)
Q Consensus 187 l~~~~~dd~~~~~~i~iw~~~~~~~~~~~ 215 (240)
+.++..+ |.|+-.|..+++..|..
T Consensus 3 v~~~~~~-----g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 3 VYVGTPD-----GYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEETTT-----SEEEEEETTTTSEEEEE
T ss_pred EEEeCCC-----CEEEEEECCCCCEEEee
Confidence 4455666 99999999999888866
Done!