BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026296
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 100 VDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHL 149
D +++G FG PWLF K+FL++ + DL C L+ + ++D H
Sbjct: 218 ADAVMIGRGSFGRPWLFQELKQFLETGDIIDLSIDEKCQLMLKHIEDLHHF 268
>sp|Q5RCU3|NAPEP_PONAB N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D
OS=Pongo abelii GN=NAPEPLD PE=2 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 70 EENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQL 128
EE V ++T+L + + ++D + L DPI P + K+F +S +
Sbjct: 116 EEAGVRETGLRVTWLGHATVMVEMDELIFLTDPIFSSR---ASPSQYMGPKRFRRSPCTI 172
Query: 129 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161
S+LP +D +LI+ + DH ++ L++ N
Sbjct: 173 SELPPIDAVLISHNHYDHLDYNSVIALNERFGN 205
>sp|B1ILY5|OBG_CLOBK GTPase obg OS=Clostridium botulinum (strain Okra / Type B1) GN=obg
PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVL 210
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIV 95
>sp|A5I666|OBG_CLOBH GTPase obg OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=obg PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVL 210
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIV 95
>sp|A7FXU6|OBG_CLOB1 GTPase obg OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=obg PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVL 210
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIV 95
>sp|A7GHK2|OBG_CLOBL GTPase obg OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=obg PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVL 210
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIV 95
>sp|Q6IQ20|NAPEP_HUMAN N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D OS=Homo
sapiens GN=NAPEPLD PE=1 SV=2
Length = 393
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 70 EENAVATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKS-FQL 128
EE V ++T+L + + ++D + L DPI P + K+F +S +
Sbjct: 116 EEAGVREAGLRVTWLGHATVMVEMDELIFLTDPIFSSR---ASPSQYMGPKRFRRSPCTI 172
Query: 129 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161
S+LP +D +LI+ + DH ++ L++ N
Sbjct: 173 SELPPIDAVLISHNHYDHLDYNSVIALNERFGN 205
>sp|B1KZR3|OBG_CLOBM GTPase obg OS=Clostridium botulinum (strain Loch Maree / Type A3)
GN=obg PE=3 SV=1
Length = 424
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 161 NLKVIATPNAKTLLDPLFQNVTYVEP---GQSSEIEGRNGSKLRVKATAGPVL 210
N+ ++ PN TLLD ++ EP G S+ G+NG L +K G ++
Sbjct: 43 NVVLVVDPNMTTLLDFTYKRKYKAEPGGNGAGSKCFGKNGKDLHIKVPMGTIV 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,015,226
Number of Sequences: 539616
Number of extensions: 3527969
Number of successful extensions: 7692
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7690
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)