Query 026296
Match_columns 240
No_of_seqs 257 out of 1918
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2220 Predicted Zn-dependent 99.9 6.9E-24 1.5E-28 185.7 15.2 143 75-234 3-157 (258)
2 PRK11709 putative L-ascorbate 99.9 1.8E-22 3.8E-27 184.5 15.7 155 75-238 34-228 (355)
3 PRK00685 metal-dependent hydro 99.9 4.2E-21 9.2E-26 164.2 15.1 132 79-234 1-140 (228)
4 KOG3798 Predicted Zn-dependent 99.8 1.4E-19 3.1E-24 155.3 10.0 150 76-234 78-236 (343)
5 PF13483 Lactamase_B_3: Beta-l 99.8 6.5E-19 1.4E-23 143.8 9.3 111 80-236 1-113 (163)
6 PRK11244 phnP carbon-phosphoru 99.3 2.1E-11 4.5E-16 106.2 12.8 121 85-237 36-162 (250)
7 PF12706 Lactamase_B_2: Beta-l 99.3 8.9E-12 1.9E-16 103.1 7.0 101 129-238 25-138 (194)
8 PRK02113 putative hydrolase; P 99.3 4.4E-11 9.5E-16 104.0 11.3 112 86-223 35-161 (252)
9 TIGR03307 PhnP phosphonate met 99.2 9.1E-11 2E-15 101.4 12.2 119 86-235 27-151 (238)
10 TIGR00649 MG423 conserved hypo 99.2 3.4E-10 7.5E-15 105.9 12.2 130 84-230 12-152 (422)
11 COG0426 FpaA Uncharacterized f 99.1 2.2E-10 4.7E-15 105.2 10.0 127 87-233 37-172 (388)
12 PRK05184 pyrroloquinoline quin 99.1 6.1E-10 1.3E-14 100.0 12.5 137 86-237 39-199 (302)
13 PRK11921 metallo-beta-lactamas 99.1 4.5E-10 9.8E-15 104.3 11.5 107 86-210 33-144 (394)
14 smart00849 Lactamase_B Metallo 99.1 6.8E-10 1.5E-14 90.1 10.7 106 82-207 2-120 (183)
15 PRK04286 hypothetical protein; 99.1 1E-09 2.2E-14 98.4 12.2 136 86-234 15-183 (298)
16 TIGR03675 arCOG00543 arCOG0054 99.1 2.1E-09 4.5E-14 105.3 13.5 120 76-210 172-324 (630)
17 TIGR02651 RNase_Z ribonuclease 99.0 1.7E-09 3.6E-14 96.2 10.7 117 85-225 17-148 (299)
18 PRK05452 anaerobic nitric oxid 99.0 2.4E-09 5.2E-14 101.9 10.6 107 87-210 36-148 (479)
19 PLN02469 hydroxyacylglutathion 99.0 3.4E-09 7.3E-14 93.3 10.6 103 83-212 8-116 (258)
20 COG0595 mRNA degradation ribon 98.9 1.5E-08 3.2E-13 97.6 12.6 140 77-232 7-163 (555)
21 TIGR02108 PQQ_syn_pqqB coenzym 98.9 2.3E-08 4.9E-13 90.0 11.5 139 86-235 38-197 (302)
22 PLN02398 hydroxyacylglutathion 98.8 1E-08 2.2E-13 93.2 8.6 110 78-212 75-191 (329)
23 TIGR03413 GSH_gloB hydroxyacyl 98.8 3.4E-08 7.3E-13 86.3 10.0 98 87-211 11-110 (248)
24 PRK10241 hydroxyacylglutathion 98.8 1.7E-08 3.7E-13 88.4 8.1 99 88-212 14-114 (251)
25 TIGR02649 true_RNase_BN ribonu 98.8 5.4E-08 1.2E-12 87.1 10.8 118 84-225 15-150 (303)
26 PLN02962 hydroxyacylglutathion 98.7 2.3E-08 5.1E-13 87.7 7.1 103 84-212 21-129 (251)
27 COG1236 YSH1 Predicted exonucl 98.7 2.4E-07 5.2E-12 87.1 13.8 125 84-232 12-160 (427)
28 PRK02126 ribonuclease Z; Provi 98.7 1.6E-07 3.4E-12 85.7 10.8 78 80-175 10-91 (334)
29 COG1782 Predicted metal-depend 98.7 1.6E-07 3.4E-12 88.2 10.4 117 78-210 180-330 (637)
30 COG1237 Metal-dependent hydrol 98.6 4E-08 8.7E-13 85.5 5.3 73 87-172 23-96 (259)
31 PF00753 Lactamase_B: Metallo- 98.6 2.8E-08 6E-13 80.2 2.9 69 83-163 3-71 (194)
32 COG2248 Predicted hydrolase (m 98.5 1.4E-06 3E-11 75.7 11.1 127 87-235 16-183 (304)
33 PRK00055 ribonuclease Z; Revie 98.5 1.3E-07 2.9E-12 82.2 4.9 83 79-175 2-99 (270)
34 KOG0813 Glyoxylase [General fu 98.4 6.3E-07 1.4E-11 78.7 7.9 71 129-212 47-121 (265)
35 COG0491 GloB Zn-dependent hydr 98.4 1.2E-06 2.5E-11 74.2 9.0 111 86-212 25-152 (252)
36 PRK11539 ComEC family competen 98.2 2E-05 4.4E-10 79.1 12.6 107 76-205 498-608 (755)
37 TIGR00361 ComEC_Rec2 DNA inter 98.1 4E-05 8.7E-10 75.9 13.8 109 78-205 439-551 (662)
38 COG1234 ElaC Metal-dependent h 98.0 2.5E-05 5.4E-10 70.0 8.8 61 79-153 2-74 (292)
39 KOG1136 Predicted cleavage and 98.0 7.3E-05 1.6E-09 67.6 11.1 108 84-206 15-154 (501)
40 KOG1135 mRNA cleavage and poly 98.0 9.1E-05 2E-09 72.0 11.8 112 85-210 14-151 (764)
41 COG2333 ComEC Predicted hydrol 97.8 0.0003 6.5E-09 63.1 12.4 109 79-205 44-159 (293)
42 KOG1137 mRNA cleavage and poly 97.8 3.8E-05 8.2E-10 73.0 6.0 120 76-211 11-162 (668)
43 KOG0814 Glyoxylase [General fu 97.7 2.8E-05 6.1E-10 64.4 3.3 91 94-211 31-124 (237)
44 COG1235 PhnP Metal-dependent h 97.5 9.2E-05 2E-09 65.3 4.5 24 132-157 61-84 (269)
45 TIGR02650 RNase_Z_T_toga ribon 97.3 0.00068 1.5E-08 60.2 7.3 94 129-225 36-147 (277)
46 PF14597 Lactamase_B_5: Metall 97.0 0.00033 7.1E-09 58.4 2.0 98 85-211 22-121 (199)
47 KOG1361 Predicted hydrolase in 94.7 0.1 2.2E-06 49.7 7.1 69 132-210 111-183 (481)
48 KOG2121 Predicted metal-depend 93.6 0.02 4.3E-07 56.6 -0.0 67 77-152 441-521 (746)
49 COG2015 Alkyl sulfatase and re 92.0 0.065 1.4E-06 51.0 1.1 67 87-167 127-200 (655)
50 PF02112 PDEase_II: cAMP phosp 79.4 1.3 2.7E-05 40.7 2.1 44 133-176 79-125 (335)
51 KOG4736 Uncharacterized conser 79.1 4.3 9.3E-05 36.5 5.3 94 87-210 96-189 (302)
52 KOG3592 Microtubule-associated 75.1 1.5 3.3E-05 43.8 1.4 48 87-148 49-96 (934)
53 COG5212 PDE1 Low-affinity cAMP 71.6 13 0.00028 33.5 6.2 149 78-234 55-228 (356)
54 KOG3798 Predicted Zn-dependent 59.7 3.8 8.2E-05 36.3 0.6 57 93-152 101-157 (343)
55 PF13691 Lactamase_B_4: tRNase 52.7 27 0.00059 24.0 3.8 49 86-148 12-62 (63)
56 PRK05096 guanosine 5'-monophos 42.5 20 0.00044 33.0 2.5 36 131-167 120-157 (346)
57 PF00478 IMPDH: IMP dehydrogen 39.0 18 0.00038 33.5 1.6 35 133-168 120-156 (352)
58 TIGR01305 GMP_reduct_1 guanosi 33.8 35 0.00076 31.4 2.6 36 131-167 119-156 (343)
59 COG0192 MetK S-adenosylmethion 27.9 1E+02 0.0022 28.7 4.5 22 133-154 184-205 (388)
60 PF10087 DUF2325: Uncharacteri 27.2 83 0.0018 22.9 3.3 45 129-174 44-89 (97)
No 1
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.91 E-value=6.9e-24 Score=185.67 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=113.7
Q ss_pred cCCcceEEEeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHH
Q 026296 75 ATDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKP 154 (240)
Q Consensus 75 ~~~~~~it~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~ 154 (240)
..+.|+|||+||||++|+.++++||||||++++.+ +..+.+ .....+++++|+|+|||+|+||+|.+++.+
T Consensus 3 ~~~~m~itwlGha~~lie~~~~~iliDP~~~~~~~-~~~~~~--------~~~~~~~~~~D~ilitH~H~DHl~~~~~~~ 73 (258)
T COG2220 3 SAEDMKITWLGHAAFLIETGGKRILIDPVLSGAPS-PSNFPG--------GLFEDLLPPIDYILITHDHYDHLDDETLIA 73 (258)
T ss_pred CCcCceEEEecceEEEEEECCEEEEECcccCCCCC-cccccC--------cCChhhcCCCCEEEEeCCCccccCHHHHHH
Confidence 35689999999999999999999999999998766 322110 122456778999999999999999999888
Q ss_pred hhhhCCCCeEEEccChHH-HHhhh---cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCC-C-------CCCcceEE
Q 026296 155 LSKMSPNLKVIATPNAKT-LLDPL---FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP-W-------QRPENGVL 222 (240)
Q Consensus 155 l~~~~p~~~v~~~p~~~~-~l~~~---~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~-~-------~~~~~G~v 222 (240)
+... ++++++++++.. .+.++ ..++.+++||+++++ ++++|+++++.|.... + ....+||+
T Consensus 74 ~~~~--~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~v 146 (258)
T COG2220 74 LRTN--KAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIEL-----GDLEITAVPAYHVSARHLPGRGIRPTGLWVGYV 146 (258)
T ss_pred HhcC--CCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEe-----cCcEEEEEEeecccccccCCCCccccCCceEEE
Confidence 7742 477888899885 55455 457999999999999 8999999999886532 1 12357999
Q ss_pred EEEeCCCEEEEc
Q 026296 223 CIMQVSRQFFTR 234 (240)
Q Consensus 223 i~~~~~~~~y~~ 234 (240)
| +..+.++|++
T Consensus 147 i-~~~g~~iyh~ 157 (258)
T COG2220 147 I-ETPGGRVYHA 157 (258)
T ss_pred E-EeCCceEEec
Confidence 9 7788999975
No 2
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.89 E-value=1.8e-22 Score=184.49 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=109.5
Q ss_pred cCCcceEEEeCCcEEEEEe-CCcEEEEcCccCCCCc--c--c--------ccccccCC----CcccC-ccCCCCCCCccE
Q 026296 75 ATDVFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLD--F--G--------IPWLFDAG----KKFLK-SFQLSDLPQVDC 136 (240)
Q Consensus 75 ~~~~~~it~lGhss~li~~-~g~~ILiDP~~~~~~~--~--p--------~~~~~~~~----~~~~~-~~~~~~lp~iD~ 136 (240)
+.++++++||||||++|++ +|.+||||+|++ +++ . | ..+.+..+ .|..+ +++.+++++||+
T Consensus 34 ~~~~~~~~wlG~a~~li~~~~g~~ILiD~~~~-~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~IDa 112 (355)
T PRK11709 34 PPGTFAMWWLGCTGIWLKTEGGTNVCVDLWCG-TGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREIDA 112 (355)
T ss_pred CCCcEEEEEecceEEEEEcCCCcEEEEeecCC-CCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCCCE
Confidence 5678999999999999998 689999998765 321 0 1 11222110 01112 455678999999
Q ss_pred EEecCCCCCCCChhhHHHhhhhC-CCCeEEEccChHH-HHhhh---cCceEEeCCCCeEEEceecCCcEEEEEEcCCCC-
Q 026296 137 LLITQSLDDHCHLKTLKPLSKMS-PNLKVIATPNAKT-LLDPL---FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL- 210 (240)
Q Consensus 137 VLISH~H~DHld~~tl~~l~~~~-p~~~v~~~p~~~~-~l~~~---~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~- 210 (240)
|||||+|+||+|..+++.+.+.. +++++ +.+.++. +++++ ..++++++|||++++ ++++|+++|+.|.
T Consensus 113 VLiTH~H~DHlD~~tl~~l~~~~~~~~~~-v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~i-----g~v~It~lpa~h~~ 186 (355)
T PRK11709 113 VLATHDHSDHIDVNVAAAVLQNCADHVKF-IGPQACVDLWIGWGVPKERCIVVKPGDVVKV-----KDIKIHALDSFDRT 186 (355)
T ss_pred EEECCCcccccChHHHHHHHhhcCCCcEE-EEcHHHHHHHHhcCCCcceEEEecCCCcEEE-----CCEEEEEEeccccc
Confidence 99999999999999999887754 24554 4466554 66666 368999999999999 8999999999542
Q ss_pred ----------CC--CC--C--CCcceEEEEEeCCCEEEEccCCC
Q 026296 211 ----------GP--PW--Q--RPENGVLCIMQVSRQFFTRPTDS 238 (240)
Q Consensus 211 ----------g~--~~--~--~~~~G~vi~~~~~~~~y~~~~~~ 238 (240)
.. .+ . ....||+| +.++++||++ +|+
T Consensus 187 ~~i~~p~~h~~~~~~~~~d~~~~~~gyvi-e~~~~tvy~s-GDT 228 (355)
T PRK11709 187 ALVTLPADGKAAGGVLPDDMDRRAVNYLF-KTPGGNIYHS-GDS 228 (355)
T ss_pred cccccccccccccccccccCCcceEEEEE-EeCCeEEEEe-CCC
Confidence 10 11 1 12369999 6788899854 443
No 3
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.87 E-value=4.2e-21 Score=164.18 Aligned_cols=132 Identities=23% Similarity=0.313 Sum_probs=98.0
Q ss_pred ceEEEeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhh
Q 026296 79 FKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM 158 (240)
Q Consensus 79 ~~it~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~ 158 (240)
|+++|||||||+|+.+|.+|||||++++... . . +..++. ++|+|||||.|+||++. .. .+.++
T Consensus 1 m~i~~lG~s~~li~~~~~~iLiDP~~~~~~~--~-~-----------~~~~~~-~id~vliTH~H~DH~~~-~~-~~~~~ 63 (228)
T PRK00685 1 MKITWLGHSAFLIETGGKKILIDPFITGNPL--A-D-----------LKPEDV-KVDYILLTHGHGDHLGD-TV-EIAKR 63 (228)
T ss_pred CEEEEEcceEEEEEECCEEEEECCCCCCCCC--C-C-----------CChhcC-cccEEEeCCCCcccccc-HH-HHHHh
Confidence 7899999999999999999999999875322 1 0 112333 89999999999999972 33 33332
Q ss_pred CCCCeEEEccChHHHHhhh-cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCC-------CCCcceEEEEEeCCCE
Q 026296 159 SPNLKVIATPNAKTLLDPL-FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW-------QRPENGVLCIMQVSRQ 230 (240)
Q Consensus 159 ~p~~~v~~~p~~~~~l~~~-~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~-------~~~~~G~vi~~~~~~~ 230 (240)
+++++|+++...+.+++. +.+++++++|+++++ ++++|+++|+.|....- ....+||+| +.++++
T Consensus 64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i-~~~~~~ 136 (228)
T PRK00685 64 -TGATVIANAELANYLSEKGVEKTHPMNIGGTVEF-----DGGKVKLTPALHSSSFIDEDGITYLGNPTGFVI-TFEGKT 136 (228)
T ss_pred -CCCEEEEeHHHHHHHHhcCCCceeeccCCCcEEE-----CCEEEEEEEEEcCCCCcCCCCcccCCCceEEEE-EECCeE
Confidence 478887766555566655 557899999999999 89999999999864321 012489999 567778
Q ss_pred EEEc
Q 026296 231 FFTR 234 (240)
Q Consensus 231 ~y~~ 234 (240)
+|+.
T Consensus 137 i~~~ 140 (228)
T PRK00685 137 IYHA 140 (228)
T ss_pred EEEe
Confidence 8754
No 4
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=155.25 Aligned_cols=150 Identities=22% Similarity=0.289 Sum_probs=117.0
Q ss_pred CCcceEEEeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccC--ccCCCCCCCccEEEecCCCCCCCChhhHH
Q 026296 76 TDVFKLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (240)
Q Consensus 76 ~~~~~it~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~--~~~~~~lp~iD~VLISH~H~DHld~~tl~ 153 (240)
...+--|||||||.++..+|..+++||+|+.+++|. + ++ ++|+. +..++++|.+|.+++||+|+||+|..+++
T Consensus 78 ~~~~~~twlg~a~~~~~~~g~~~~tdpvf~d~~if~-s-~g---Pkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~ 152 (343)
T KOG3798|consen 78 ESDLFATWLGHATVLVDLEGVKFVTDPVWADRASFT-S-FG---PKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVK 152 (343)
T ss_pred cCcHHHhhhcceeEEEeccCcEEecchhhccchhhc-c-cC---cccccCCchhhccCCCCceeccccccccccchHHHH
Confidence 345678999999999999999999999999988742 2 24 34543 56689999999999999999999999999
Q ss_pred HhhhhCCCCeEEEccChHH-HHhhh-cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCC-----CcceEEEEEe
Q 026296 154 PLSKMSPNLKVIATPNAKT-LLDPL-FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQR-----PENGVLCIMQ 226 (240)
Q Consensus 154 ~l~~~~p~~~v~~~p~~~~-~l~~~-~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~-----~~~G~vi~~~ 226 (240)
.+... +.++.++|++.. ++... ...++++.||++.++- +++.-++|.|+||+|++.+... -+++|.+ ..
T Consensus 153 ~~~~~--~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~v-kn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v-~g 228 (343)
T KOG3798|consen 153 KITDR--NPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFV-KNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAV-IG 228 (343)
T ss_pred hhhcc--CccceeehhhhhheecCCCCCceeEeeccchhcee-cCCcEEEEEEcchhhhcccccccCCcceeeeeEE-ec
Confidence 98876 456678888887 55544 5679999999998873 3446799999999999764211 2468888 56
Q ss_pred CCCEEEEc
Q 026296 227 VSRQFFTR 234 (240)
Q Consensus 227 ~~~~~y~~ 234 (240)
...++|++
T Consensus 229 ~~nrfffa 236 (343)
T KOG3798|consen 229 ENNRFFFA 236 (343)
T ss_pred CCceEEec
Confidence 66666653
No 5
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.78 E-value=6.5e-19 Score=143.84 Aligned_cols=111 Identities=25% Similarity=0.417 Sum_probs=77.7
Q ss_pred eEEEeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhC
Q 026296 80 KLTYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMS 159 (240)
Q Consensus 80 ~it~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~ 159 (240)
+|||+|||||+|+.+|++||||||... .. +. ....++|+|+|||.|.||++.++++++.
T Consensus 1 ~It~lgha~~~ie~~g~~iliDP~~~~-~~----~~-------------~~~~~~D~IlisH~H~DH~~~~~l~~~~--- 59 (163)
T PF13483_consen 1 KITWLGHASFLIETGGKRILIDPWFSS-VG----YA-------------PPPPKADAILISHSHPDHFDPETLKRLD--- 59 (163)
T ss_dssp EEEEEETTEEEEEETTEEEEES--TTT-------T--------------TSS-B-SEEEESSSSTTT-CCCCCCCHH---
T ss_pred CEEEEEeeEEEEEECCEEEEECCCCCc-cC----cc-------------cccCCCCEEEECCCccccCChhHhhhcc---
Confidence 699999999999999999999998642 11 10 1125789999999999999977766552
Q ss_pred CCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCC--CCCCcceEEEEEeCCCEEEEccC
Q 026296 160 PNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP--WQRPENGVLCIMQVSRQFFTRPT 236 (240)
Q Consensus 160 p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~--~~~~~~G~vi~~~~~~~~y~~~~ 236 (240)
.++..+.+|+++++ ++++|+.+++.|.... .....+||++ +.++.++|+...
T Consensus 60 -------------------~~~~vv~~~~~~~~-----~~~~i~~v~~~~~~~~~~~~~~~~~~~i-~~~g~~i~~~Gd 113 (163)
T PF13483_consen 60 -------------------RDIHVVAPGGEYRF-----GGFKITAVPAYHDGPGGHPRGENVGYLI-EVGGVTIYHAGD 113 (163)
T ss_dssp -------------------TSSEEE-TTEEEEC-----TTEEEEEEEEEE-STGTS-TTCCEEEEE-EETTEEEEE-TT
T ss_pred -------------------cccEEEccceEEEE-----eeeEEEEEeeeccccCCCCcCCeEEEEE-EeCCCEEEEECC
Confidence 34556667889999 8999999999875322 1234579999 668889997654
No 6
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.33 E-value=2.1e-11 Score=106.22 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCC-hhhHHHhhhhCCCCe
Q 026296 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLSKMSPNLK 163 (240)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld-~~tl~~l~~~~p~~~ 163 (240)
..+|++|+.++..|||||... . +. +++ +..++|+|||||.|.||+. ...+.. .+...++
T Consensus 36 ~~~s~li~~~~~~iLiD~G~~---~-----~~----~~~------~~~~i~~i~iTH~H~DHi~gl~~l~~--~~~~~i~ 95 (250)
T PRK11244 36 RPCSALIEFNGARTLIDAGLP---D-----LA----ERF------PPGSLQQILLTHYHMDHVQGLFPLRW--GVGDPIP 95 (250)
T ss_pred ceeEEEEEECCCEEEEECCCh---H-----Hh----hcC------CcccCCEEEEccCchhhhccHHHHHh--hcCCcee
Confidence 347899999999999999421 1 10 111 2247899999999999995 333322 1113577
Q ss_pred EEEccChHH---HHhhh-cCce-EEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEEeCCCEEEEccCC
Q 026296 164 VIATPNAKT---LLDPL-FQNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIMQVSRQFFTRPTD 237 (240)
Q Consensus 164 v~~~p~~~~---~l~~~-~~~i-~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~~~~~~~y~~~~~ 237 (240)
+|+++.... +++.. ..+. .++++++++++ ++++|+++|..|..+ ..||+| +.+++++++. +|
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~I~~~~~~H~~~-----s~g~~i-~~~~~~i~ys-gD 162 (250)
T PRK11244 96 VYGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDL-----GGLQVTPLPLNHSKL-----TFGYLL-ETAHSRVAYL-TD 162 (250)
T ss_pred EEeCCchhhHHHHhcCccccccccccCCCCCeeE-----CCEEEEEEeeCCCcc-----eeEEEE-ecCCeEEEEE-cC
Confidence 777654322 22211 1122 45889999999 799999999988532 479999 5666666655 44
No 7
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.27 E-value=8.9e-12 Score=103.07 Aligned_cols=101 Identities=25% Similarity=0.441 Sum_probs=73.7
Q ss_pred CCCCCccEEEecCCCCCC-CChhhHHHhhhhCCCCeEEEccChHHHHh--hh----------cCceEEeCCCCeEEEcee
Q 026296 129 SDLPQVDCLLITQSLDDH-CHLKTLKPLSKMSPNLKVIATPNAKTLLD--PL----------FQNVTYVEPGQSSEIEGR 195 (240)
Q Consensus 129 ~~lp~iD~VLISH~H~DH-ld~~tl~~l~~~~p~~~v~~~p~~~~~l~--~~----------~~~i~~l~~ge~~~l~~~ 195 (240)
++++.+|+|+|||.|+|| ++..++.......++ ++|+++...+.++ .+ ..++.++..++.+++
T Consensus 25 ~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 100 (194)
T PF12706_consen 25 EDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDLYPEEDNFDIIEISPGDEFEI--- 100 (194)
T ss_dssp SSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTTCCTTSGEEEEEECTTEEEEE---
T ss_pred cccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccccccccceeEEEeccCceEEe---
Confidence 356799999999999999 788888776665444 7888776666666 32 135788999999999
Q ss_pred cCCcEEEEEEcCCCCCCCCCCCcceEEEEEeCCCEEEEccCCC
Q 026296 196 NGSKLRVKATAGPVLGPPWQRPENGVLCIMQVSRQFFTRPTDS 238 (240)
Q Consensus 196 ~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~~~~~~~y~~~~~~ 238 (240)
++++|+++|+.|..+....+. ||+| +.++++||+. +|+
T Consensus 101 --~~~~i~~~~~~H~~~~~~~~~-g~~i-~~~~~~i~~~-gD~ 138 (194)
T PF12706_consen 101 --GDFRITPFPANHGPPSYGGNK-GFVI-EPDGKKIFYS-GDT 138 (194)
T ss_dssp --TTEEEEEEEEESSSCCEEECC-EEEE-EETTEEEEEE-TSS
T ss_pred --ceEEEEEEeccccccccccCc-eEEE-ecCCcceEEe-ecc
Confidence 899999999999743210001 4999 6778888876 443
No 8
>PRK02113 putative hydrolase; Provisional
Probab=99.26 E-value=4.4e-11 Score=104.05 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=77.6
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCC-hhhHHHhhhhCCCCeE
Q 026296 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLSKMSPNLKV 164 (240)
Q Consensus 86 hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld-~~tl~~l~~~~p~~~v 164 (240)
.+|++|+.++..||||+ |... ..++. + .++.++|+|+|||.|+||+. ++.+..+.+. ..+++
T Consensus 35 ~~s~li~~~~~~iLiD~---G~g~-~~~l~-----~-------~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~-~~~~i 97 (252)
T PRK02113 35 RTSALVETEGARILIDC---GPDF-REQML-----R-------LPFGKIDAVLITHEHYDHVGGLDDLRPFCRF-GEVPI 97 (252)
T ss_pred eeEEEEEECCeEEEEEC---CchH-HHHHH-----h-------cCccccCEEEECCCChhhhCCHHHHHHhccC-CCceE
Confidence 58899999999999997 4222 11111 1 24568899999999999995 4555443322 36888
Q ss_pred EEccChHHHHhhh---------c-----CceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEE
Q 026296 165 IATPNAKTLLDPL---------F-----QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLC 223 (240)
Q Consensus 165 ~~~p~~~~~l~~~---------~-----~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi 223 (240)
|+++...+.+++. . .++.++++|+++++ ++++|+++|..|... +..||.+
T Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~i~~~~~~H~~~----~~~gy~i 161 (252)
T PRK02113 98 YAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLV-----NHTEVTPLRVMHGKL----PILGYRI 161 (252)
T ss_pred EECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEE-----CCeEEEEEEecCCCc----cEEEEEe
Confidence 8876555554432 0 24678899999999 799999999988521 2357777
No 9
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.24 E-value=9.1e-11 Score=101.37 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=77.8
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCC-hhhHHHhhhhCCCCeE
Q 026296 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLSKMSPNLKV 164 (240)
Q Consensus 86 hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld-~~tl~~l~~~~p~~~v 164 (240)
.+|++|+.+|..||||+.+. . +. +. .+..++|+|||||.|.||++ ...+.. ....++++
T Consensus 27 ~~s~~i~~~~~~iliD~G~~---~-----~~----~~------~~~~~id~i~iTH~H~DHi~gl~~l~~--~~~~~~~v 86 (238)
T TIGR03307 27 PCSAVIEFNGARTLIDAGLT---D-----LA----ER------FPPGSLQAILLTHYHMDHVQGLFPLRW--GVGEPIPV 86 (238)
T ss_pred ceEEEEEECCcEEEEECCCh---h-----Hh----hc------cCccCCCEEEEecCchhhhcchHHHHH--hcCCceeE
Confidence 47788999999999998422 1 10 11 12347899999999999995 333322 11135778
Q ss_pred EEccChHH---HHhhh-cCce-EEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEEeCCCEEEEcc
Q 026296 165 IATPNAKT---LLDPL-FQNV-TYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIMQVSRQFFTRP 235 (240)
Q Consensus 165 ~~~p~~~~---~l~~~-~~~i-~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~~~~~~~y~~~ 235 (240)
|+++.... .++.. ..+. .++.+++++++ ++++|+++|+.|..+ ..||+| +.+++++++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~H~~~-----~~g~~i-~~~~~~i~y~g 151 (238)
T TIGR03307 87 YGPPDEEGCDDLFKHPGILDFSKPLEAFEPFDL-----GGLRVTPLPLVHSKL-----TFGYLL-ETDGQRVAYLT 151 (238)
T ss_pred EeCchHhhHHHHhcCcccccccccccCCceEEE-----CCEEEEEEecCCCCc-----ceEEEE-ecCCcEEEEEe
Confidence 87654322 22111 1122 34788999999 899999999998532 469999 56666666544
No 10
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.15 E-value=3.4e-10 Score=105.89 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=83.4
Q ss_pred eCCcEEEEEeCCcEEEEcCccCCCCcccc-cccccCCCcccCccC-C-CCCCCccEEEecCCCCCCCChhhHHHhhhhCC
Q 026296 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGI-PWLFDAGKKFLKSFQ-L-SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP 160 (240)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~~~~~~~p~-~~~~~~~~~~~~~~~-~-~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p 160 (240)
+|.||++|+.++..||||+...- +. ...+ .....+.++ + +...++|+|+|||.|.||+. .+..|.++++
T Consensus 12 iG~n~~ll~~~~~~iliD~G~~~----~~~~~~g--~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHig--gl~~l~~~~~ 83 (422)
T TIGR00649 12 IGKNMYVVEIDDDVFIFDAGILF----PEDAMLG--VDGVIPDFSYLQENQDKVKGIFITHGHEDHIG--AVPYLFHTVG 83 (422)
T ss_pred cCCeEEEEEECCeEEEEeCCCCC----CcccccC--CccccCCHHHHHhccccCCEEEECCCChHHhC--cHHHHHHhCC
Confidence 46899999999999999985321 11 0110 000001000 1 12348999999999999996 4555555544
Q ss_pred CCeEEEccChHHHHhhh--------cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEEeCCCE
Q 026296 161 NLKVIATPNAKTLLDPL--------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIMQVSRQ 230 (240)
Q Consensus 161 ~~~v~~~p~~~~~l~~~--------~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~~~~~~ 230 (240)
.+++|+++.....++.. ..++.+++.+++++++ ++++|++.|+.|-.+ ...||.+. .++++
T Consensus 84 ~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig----~~~~v~~~~~~H~~p----~s~g~~i~-~~~~~ 152 (422)
T TIGR00649 84 FPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETG----ENHTIEFIRITHSIP----DSVGFALH-TPLGY 152 (422)
T ss_pred CCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeC----CceEEEEEECCCCCc----ceEEEEEE-eCCcE
Confidence 46889988776654431 1346789999999993 469999999988422 13578873 34443
No 11
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.14 E-value=2.2e-10 Score=105.18 Aligned_cols=127 Identities=24% Similarity=0.395 Sum_probs=94.3
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeEEE
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~~ 166 (240)
|||||+ +++++||||+ + ..|--.++ .+++ ..-++.+||||+++|.-.||.+ +|..+.+.+|++++++
T Consensus 37 NSYLI~-~~k~aLID~~--~-~~~~~~~l-----~~l~--~~id~k~iDYIi~~H~ePDhsg--~l~~ll~~~p~a~ii~ 103 (388)
T COG0426 37 NSYLIV-GDKTALIDTV--G-EKFFDEYL-----ENLS--KYIDPKEIDYIIVNHTEPDHSG--SLPELLELAPNAKIIC 103 (388)
T ss_pred eeEEEe-CCcEEEECCC--C-cchHHHHH-----HHHH--hhcChhcCeEEEECCCCcchhh--hHHHHHHhCCCCEEEe
Confidence 999999 9999999995 2 22111122 1111 1345567999999999999997 8999999889999999
Q ss_pred ccChHHHHhhh---cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCC------CCcceEEEEEeCCCEEEE
Q 026296 167 TPNAKTLLDPL---FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQ------RPENGVLCIMQVSRQFFT 233 (240)
Q Consensus 167 ~p~~~~~l~~~---~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~------~~~~G~vi~~~~~~~~y~ 233 (240)
+..+++.|+.. ...+..++.|+++.+ |+-+++++|++.. +|+ .++++.+++..-.+..+.
T Consensus 104 s~~~~~~L~~~~~~~~~~~ivk~Gd~ldl-----Gg~tL~Fi~ap~L--HWPd~m~TYd~~~kILFS~D~fG~h~~ 172 (388)
T COG0426 104 SKLAARFLKGFYHDPEWFKIVKTGDTLDL-----GGHTLKFIPAPFL--HWPDTMFTYDPEDKILFSCDAFGAHVC 172 (388)
T ss_pred eHHHHHHHHHhcCCccceeecCCCCEecc-----CCcEEEEEeCCCC--CCCCceeEeecCCcEEEcccccccccc
Confidence 99999888876 223788999999999 6888888888754 443 245677776555555543
No 12
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.14 E-value=6.1e-10 Score=100.03 Aligned_cols=137 Identities=19% Similarity=0.143 Sum_probs=83.0
Q ss_pred CcEEEEEeCCc-EEEEcCccCCCCcccccccccCCCcccCccCC---CCCCCccEEEecCCCCCCCChhhHHHhhhhCCC
Q 026296 86 GNSWLWDLDGV-KVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL---SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (240)
Q Consensus 86 hss~li~~~g~-~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~---~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~ 161 (240)
.+|++|+.+|. +||||. +... ..++. +...+.. .++.++|+|+|||.|+||+. .|..|... ..
T Consensus 39 ~ss~li~~~g~~~iLiD~---G~g~-~~ql~------~~~~~~~~~g~~~~~ldav~lTH~H~DHi~--Gl~~l~~~-~~ 105 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNA---SPDI-RQQIQ------ATPALQPARGLRDTPIAAVVLTDGQIDHTT--GLLTLREG-QP 105 (302)
T ss_pred ccEEEEEcCCCEEEEEEC---ChhH-HHHHH------hchhcCccccCCcccccEEEEeCCchhhhh--ChHhhccC-CC
Confidence 58899987664 699996 4322 11111 1111111 13457999999999999994 34444333 36
Q ss_pred CeEEEccChHHHHhhh---c--------CceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCC--------CCCcceEE
Q 026296 162 LKVIATPNAKTLLDPL---F--------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW--------QRPENGVL 222 (240)
Q Consensus 162 ~~v~~~p~~~~~l~~~---~--------~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~--------~~~~~G~v 222 (240)
++||.++...+.+++. + -++.++..++.++++ ..++++|+++|..|--+.| .....||.
T Consensus 106 l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~--~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyr 183 (302)
T PRK05184 106 FPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVP--GLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLR 183 (302)
T ss_pred eEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEec--CCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEE
Confidence 8888877666555442 1 134677778888881 0027999999997642211 12346999
Q ss_pred EE-EeCCCEEEEccCC
Q 026296 223 CI-MQVSRQFFTRPTD 237 (240)
Q Consensus 223 i~-~~~~~~~y~~~~~ 237 (240)
|. +.+++++.+.+.+
T Consensus 184 i~~~~~g~~~~y~tD~ 199 (302)
T PRK05184 184 IEDRATGKRLFYAPGL 199 (302)
T ss_pred EEecCCCcEEEEECCC
Confidence 95 2556666666655
No 13
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.13 E-value=4.5e-10 Score=104.28 Aligned_cols=107 Identities=23% Similarity=0.198 Sum_probs=72.2
Q ss_pred CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeEE
Q 026296 86 GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (240)
Q Consensus 86 hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (240)
-|||||+. +.++|||++... . ...++ ..+.. ..++.+||+|++||.|.||++ ++..+.+++|+++++
T Consensus 33 ~NsyLI~~-~~~vLIDtg~~~--~-~~~~~-----~~l~~--~~~~~~Id~IilTH~H~DHig--gl~~l~~~~p~a~V~ 99 (394)
T PRK11921 33 YNSYLIKD-EKTVLIDTVWQP--F-AKEFV-----ENLKK--EIDLDKIDYIVANHGEIDHSG--ALPELMKEIPDTPIY 99 (394)
T ss_pred EEEEEEeC-CCEEEEeCCCCC--c-HHHHH-----HHHHh--hcCcccCCEEEeCCCCCchhh--HHHHHHHHCCCCEEE
Confidence 38999974 678999996432 1 11111 11110 123457999999999999997 677777777889999
Q ss_pred EccChHHHHhhh---cCceEEeCCCCeEEEceecCCcEEEEEE--cCCCC
Q 026296 166 ATPNAKTLLDPL---FQNVTYVEPGQSSEIEGRNGSKLRVKAT--AGPVL 210 (240)
Q Consensus 166 ~~p~~~~~l~~~---~~~i~~l~~ge~~~l~~~~~~~~~I~~~--Pa~h~ 210 (240)
+++.+.+.++.. ..++..+.+|+++++ ++.+++++ |+.|+
T Consensus 100 ~~~~~~~~l~~~~~~~~~~~~v~~g~~l~l-----G~~~l~~i~tP~~H~ 144 (394)
T PRK11921 100 CTKNGAKSLKGHYHQDWNFVVVKTGDRLEI-----GSNELIFIEAPMLHW 144 (394)
T ss_pred ECHHHHHHHHHHhCCCCceEEeCCCCEEee-----CCeEEEEEeCCCCCC
Confidence 988776655443 125677899999999 56555554 76443
No 14
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.11 E-value=6.8e-10 Score=90.10 Aligned_cols=106 Identities=23% Similarity=0.241 Sum_probs=72.3
Q ss_pred EEeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCC
Q 026296 82 TYLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPN 161 (240)
Q Consensus 82 t~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~ 161 (240)
.+.++||++|+.++..|||||..+.. ...+ +.+.. . ...++|+|++||.|.||+. .+..+.++ ++
T Consensus 2 ~~~~~~~~li~~~~~~iliD~g~~~~----~~~~-----~~l~~--~-~~~~i~~i~iTH~H~DH~~--g~~~~~~~-~~ 66 (183)
T smart00849 2 GGVGVNSYLVEGDGGAILIDTGPGEA----EDLL-----AELKK--L-GPKDIDAIILTHGHPDHIG--GLPELLEA-PG 66 (183)
T ss_pred CccceeEEEEEeCCceEEEeCCCChh----HHHH-----HHHHH--c-CchhhcEEEecccCcchhc--cHHHHHhC-CC
Confidence 35789999999999999999953321 1111 00111 1 2458999999999999997 45555544 57
Q ss_pred CeEEEccChHHHHhh---------h----cCceEEeCCCCeEEEceecCCcEEEEEEcC
Q 026296 162 LKVIATPNAKTLLDP---------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAG 207 (240)
Q Consensus 162 ~~v~~~p~~~~~l~~---------~----~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa 207 (240)
+++|+++...+.++. . ..++..+..++++++ ++.+++.++.
T Consensus 67 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 120 (183)
T smart00849 67 APVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDL-----GGLELEVIHT 120 (183)
T ss_pred CcEEEchhhhHHHhccchhccccCcCCCCCccceecCCCCEEEe-----CCceEEEEEC
Confidence 888887766665542 1 235677899999999 5666666655
No 15
>PRK04286 hypothetical protein; Provisional
Probab=99.10 E-value=1e-09 Score=98.40 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=73.2
Q ss_pred CcEEEEEeCCcEEEEcCccCC--CC-cc-cccccccCCCcccC----ccCCCCCCCccEEEecCCCCCCCChhhHHHh--
Q 026296 86 GNSWLWDLDGVKVLVDPILVG--NL-DF-GIPWLFDAGKKFLK----SFQLSDLPQVDCLLITQSLDDHCHLKTLKPL-- 155 (240)
Q Consensus 86 hss~li~~~g~~ILiDP~~~~--~~-~~-p~~~~~~~~~~~~~----~~~~~~lp~iD~VLISH~H~DHld~~tl~~l-- 155 (240)
+||++|+.++.+|||||+.+- .. .+ |.+.. .+++. .+ .+.+.++|+|||||.|+||++.......
T Consensus 15 ~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~----~~~~~~~~~~i-~~~~~~id~IliTH~H~DHi~g~~~~~y~~ 89 (298)
T PRK04286 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIE----LERLEEVREKI-LEYAKKADVITISHYHYDHHTPFYEDPYEL 89 (298)
T ss_pred eeEEEEEECCeEEEEcCCCCcCccccCCCCcchh----HHHHHHHHHHh-hcccccCCEEEecCCccccCCCcccccccc
Confidence 599999999999999997431 00 00 11100 01111 11 3556689999999999999964322100
Q ss_pred -hh-----hCCCCeEEEccChH-----HHH------hhh--cCceEEeCCCCeEEEceecCCcEEEEEE-cCCCCCCCCC
Q 026296 156 -SK-----MSPNLKVIATPNAK-----TLL------DPL--FQNVTYVEPGQSSEIEGRNGSKLRVKAT-AGPVLGPPWQ 215 (240)
Q Consensus 156 -~~-----~~p~~~v~~~p~~~-----~~l------~~~--~~~i~~l~~ge~~~l~~~~~~~~~I~~~-Pa~h~g~~~~ 215 (240)
.+ -+...+++...... ... ... ......+..++.+++ ++++|+++ |..|...
T Consensus 90 ~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~i-----g~~~V~~~~~v~H~~~--- 161 (298)
T PRK04286 90 SDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRF-----GGTTIEFSPPVPHGAD--- 161 (298)
T ss_pred ccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEE-----CCEEEEEeccCCCCCC---
Confidence 00 01122333211111 011 111 123466788999999 79999977 6566321
Q ss_pred CCcceEEEE---EeCCCEEEEc
Q 026296 216 RPENGVLCI---MQVSRQFFTR 234 (240)
Q Consensus 216 ~~~~G~vi~---~~~~~~~y~~ 234 (240)
....||++. +.+++++++.
T Consensus 162 ~~~~Gy~i~~ri~~gg~~~~~~ 183 (298)
T PRK04286 162 GSKLGYVIMVRISDGDESFVFA 183 (298)
T ss_pred CCccceEEEEEEEeCCEEEEEE
Confidence 123566442 4566666654
No 16
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.06 E-value=2.1e-09 Score=105.30 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCcceEEEeCC------cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCC--CCCCCccEEEecCCCCCCC
Q 026296 76 TDVFKLTYLEG------NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL--SDLPQVDCLLITQSLDDHC 147 (240)
Q Consensus 76 ~~~~~it~lGh------ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~--~~lp~iD~VLISH~H~DHl 147 (240)
.+.|+++.||. ||++|+.++.+||+|+.+..... .. +.++.+.. .++.++|+|||||.|.||+
T Consensus 172 ~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~-~~--------~~~p~l~~~~~~~~~IDaVlITHaH~DHi 242 (630)
T TIGR03675 172 DRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGAN-GD--------NAYPYLDVPEFQLDELDAVVITHAHLDHS 242 (630)
T ss_pred CCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCcccc-ch--------hhcccccccCCCHHHCcEEEECCCCHHHH
Confidence 34589999875 99999999999999986532110 00 11111111 1245899999999999999
Q ss_pred ChhhHHHhhhhCCCCeEEEccChHHHH----hhh---------------------cCceEEeCCCCeEEEceecCCcEEE
Q 026296 148 HLKTLKPLSKMSPNLKVIATPNAKTLL----DPL---------------------FQNVTYVEPGQSSEIEGRNGSKLRV 202 (240)
Q Consensus 148 d~~tl~~l~~~~p~~~v~~~p~~~~~l----~~~---------------------~~~i~~l~~ge~~~l~~~~~~~~~I 202 (240)
+ .+..|.+...+.++|+++...+++ ... ..+...++.++++++. ++++|
T Consensus 243 G--~LP~L~k~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~----~~i~v 316 (630)
T TIGR03675 243 G--LVPLLFKYGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA----PDIKL 316 (630)
T ss_pred h--hHHHHHHhCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec----CCEEE
Confidence 7 455555432357899987654421 110 1246788999999994 68999
Q ss_pred EEEcCCCC
Q 026296 203 KATAGPVL 210 (240)
Q Consensus 203 ~~~Pa~h~ 210 (240)
++.++-|.
T Consensus 317 t~~~AGHi 324 (630)
T TIGR03675 317 TFYNAGHI 324 (630)
T ss_pred EEecCccc
Confidence 99988774
No 17
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.03 E-value=1.7e-09 Score=96.20 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCC-ChhhHHHh---hhhCC
Q 026296 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC-HLKTLKPL---SKMSP 160 (240)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHl-d~~tl~~l---~~~~p 160 (240)
+++|++|+.++..||||+ |... ..... + . -.++.++|+|+|||.|.||+ ++..+... .++..
T Consensus 17 ~~~~~~v~~~~~~iLiD~---G~g~-~~~l~-----~----~-~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~ 82 (299)
T TIGR02651 17 NLPSIALKLNGELWLFDC---GEGT-QRQML-----R----S-GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKE 82 (299)
T ss_pred CCceEEEEECCeEEEEEC---CHHH-HHHHH-----H----c-CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCc
Confidence 579999999999999997 3222 11111 0 0 11344789999999999999 45554321 11112
Q ss_pred CCeEEEccChHHHHhhh-------c---CceEEeCCCC-eEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEE
Q 026296 161 NLKVIATPNAKTLLDPL-------F---QNVTYVEPGQ-SSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIM 225 (240)
Q Consensus 161 ~~~v~~~p~~~~~l~~~-------~---~~i~~l~~ge-~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~ 225 (240)
.+++|+++...+.++.. . -++.++.+++ .++. ++++|+++|..|..+ ..||.|.+
T Consensus 83 ~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~H~~~-----~~gy~i~~ 148 (299)
T TIGR02651 83 PLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFED-----DGFKVEAFPLDHSIP-----SLGYRFEE 148 (299)
T ss_pred eEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEec-----CCEEEEEEEcCCCCc-----eEEEEEEE
Confidence 45666655444454432 1 1457788888 4777 899999999998522 46888853
No 18
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.99 E-value=2.4e-09 Score=101.89 Aligned_cols=107 Identities=23% Similarity=0.286 Sum_probs=72.7
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeEEE
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~~ 166 (240)
|||||+ ++.++||||+-.+ . ...++ +++. ...++.+||+|++||.|.||++ ++..|.+++|++++++
T Consensus 36 NsYLI~-~~~~vLIDtg~~~--~-~~~~l-----~~l~--~~~~~~~Id~IilTH~H~DH~G--gl~~Ll~~~p~a~V~~ 102 (479)
T PRK05452 36 NSYLIR-EEKNVLIDTVDHK--F-SREFV-----QNLR--NEIDLADIDYIVINHAEEDHAG--ALTELMAQIPDTPIYC 102 (479)
T ss_pred EEEEEE-CCCEEEEeCCCcc--c-HHHHH-----HHHH--hcCCHhhCCEEEeCCCCcchhc--hHHHHHHHCCCCEEEE
Confidence 999998 5689999995321 1 11121 1111 0123457999999999999996 6777777778899999
Q ss_pred ccChHHHHhhh----cCceEEeCCCCeEEEceecCCc--EEEEEEcCCCC
Q 026296 167 TPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSK--LRVKATAGPVL 210 (240)
Q Consensus 167 ~p~~~~~l~~~----~~~i~~l~~ge~~~l~~~~~~~--~~I~~~Pa~h~ 210 (240)
++.+...+... ..++..+..|++++++ ++ +++..+|+-|+
T Consensus 103 s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG----~~~~l~~i~tP~~H~ 148 (479)
T PRK05452 103 TANAIDSINGHHHHPEWNFNVVKTGDTLDIG----NGKQLIFVETPMLHW 148 (479)
T ss_pred CHHHHHHHHHhhcCCcCeEEEeCCCCEEecC----CCcEEEEEECCCCCC
Confidence 88777655443 1256788999999993 33 56666776443
No 19
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.99 E-value=3.4e-09 Score=93.28 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=70.2
Q ss_pred EeCCc-EEEEEeC--CcEEEEcCccCCCCcccccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCChhhHHHhhhh
Q 026296 83 YLEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKM 158 (240)
Q Consensus 83 ~lGhs-s~li~~~--g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~~tl~~l~~~ 158 (240)
.+..| +|+|..+ +..+||||. .+. ++ + .. +++.. ++++||+||.|+||.+ .+..|.++
T Consensus 8 ~~~dNy~Yli~d~~~~~~vlIDp~---~~~-~i--l-----~~-----l~~~g~~l~~Il~TH~H~DH~g--G~~~l~~~ 69 (258)
T PLN02469 8 CLEDNYAYLIIDESTKDAAVVDPV---DPE-KV--L-----QA-----AHEHGAKIKLVLTTHHHWDHAG--GNEKIKKL 69 (258)
T ss_pred cccceEEEEEEeCCCCeEEEECCC---ChH-HH--H-----HH-----HHHcCCcccEEEecCCCCcccc--CHHHHHHH
Confidence 34567 9999764 479999995 222 11 1 00 11222 6899999999999997 67788888
Q ss_pred CCCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCC--cEEEEEEcCCCCCC
Q 026296 159 SPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGS--KLRVKATAGPVLGP 212 (240)
Q Consensus 159 ~p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~--~~~I~~~Pa~h~g~ 212 (240)
+++++||+..... +. .....+..|++++++ + .+++..+|||+.|.
T Consensus 70 ~~~~~V~~~~~~~--~~---~~~~~v~~gd~i~lg----~~~~~~vi~tPGHT~gh 116 (258)
T PLN02469 70 VPGIKVYGGSLDN--VK---GCTHPVENGDKLSLG----KDVNILALHTPCHTKGH 116 (258)
T ss_pred CCCCEEEEechhc--CC---CCCeEeCCCCEEEEC----CceEEEEEECCCCCCCC
Confidence 7789988754321 11 112457889999993 3 37888899998764
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.91 E-value=1.5e-08 Score=97.56 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=96.2
Q ss_pred CcceEEEe------CCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccC-CC-CCCCccEEEecCCCCCCCC
Q 026296 77 DVFKLTYL------EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQ-LS-DLPQVDCLLITQSLDDHCH 148 (240)
Q Consensus 77 ~~~~it~l------Ghss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~-~~-~lp~iD~VLISH~H~DHld 148 (240)
.++++.-| |.|+++++.++..+++|.... ||..-+. +.--.+|.++ +. ...++++|+|||.|.||++
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~----fp~~~~~-gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIG 81 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLK----FPEDDLL-GVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIG 81 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccc----cCccccc-cccEEecChHHhhhccccceEEEecCCchhhcc
Confidence 34555554 579999999999999997432 3321110 0000111110 22 2348999999999999998
Q ss_pred hhhHHHhhhhCCCCeEEEccChHHHHhhh---------cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcc
Q 026296 149 LKTLKPLSKMSPNLKVIATPNAKTLLDPL---------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (240)
Q Consensus 149 ~~tl~~l~~~~p~~~v~~~p~~~~~l~~~---------~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~ 219 (240)
.|..|..+.+.+|+|.++.+.++++.- ..++++++.++++++ ++++|.+.|..|-=| ...
T Consensus 82 --aip~ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~-----~~~~v~f~~vtHSIP----ds~ 150 (555)
T COG0595 82 --ALPYLLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKF-----GSFEVEFFPVTHSIP----DSL 150 (555)
T ss_pred --chHHHHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEe-----CcEEEEEEeecccCc----cce
Confidence 788888766569999999988855432 246899999999999 899999999987422 246
Q ss_pred eEEEEEeCCCEEE
Q 026296 220 GVLCIMQVSRQFF 232 (240)
Q Consensus 220 G~vi~~~~~~~~y 232 (240)
||+|+...+.-+|
T Consensus 151 g~~i~Tp~G~Iv~ 163 (555)
T COG0595 151 GIVIKTPEGNIVY 163 (555)
T ss_pred EEEEECCCccEEE
Confidence 8888544444555
No 21
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.87 E-value=2.3e-08 Score=89.99 Aligned_cols=139 Identities=16% Similarity=0.048 Sum_probs=79.8
Q ss_pred CcEEEEEe-CCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeE
Q 026296 86 GNSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (240)
Q Consensus 86 hss~li~~-~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v 164 (240)
.+|++|+. ++..||||...+ . ..+... .+++.+-.-.++.+||+|||||.|+||+. .|..|.++ ..++|
T Consensus 38 rss~ll~~~g~~~iLID~Gpd---~-r~ql~~---~~~~~~~~gl~~~~IdaI~lTH~H~DHi~--GL~~L~~~-~~lpV 107 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPD---I-RQQIQA---TPALHPQRGLRHTPIAGVVLTDGEIDHTT--GLLTLREG-QPFTL 107 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHH---H-HHHHHh---CcccccccCCCcccCCEEEEeCCCcchhh--CHHHHcCC-CCceE
Confidence 47788866 456899996222 1 111110 00000000123457999999999999994 35445444 36999
Q ss_pred EEccChHHHHhhh--cC-----c--eEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCC---------CCCcceEEEEEe
Q 026296 165 IATPNAKTLLDPL--FQ-----N--VTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPW---------QRPENGVLCIMQ 226 (240)
Q Consensus 165 ~~~p~~~~~l~~~--~~-----~--i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~---------~~~~~G~vi~~~ 226 (240)
|+++...+.|++. +. . ...+..++.+.+.....++++|+++|..|-.+.+ .....||.|. .
T Consensus 108 ya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~-~ 186 (302)
T TIGR02108 108 YATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIE-D 186 (302)
T ss_pred EECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEE-e
Confidence 9988877755431 11 1 2456677777762111135999999998431110 1234699994 4
Q ss_pred C--CCEEEEcc
Q 026296 227 V--SRQFFTRP 235 (240)
Q Consensus 227 ~--~~~~y~~~ 235 (240)
+ ++++.+.+
T Consensus 187 ~~~g~~~~y~t 197 (302)
T TIGR02108 187 GTTGKRLFYIP 197 (302)
T ss_pred CCCCcEEEEEC
Confidence 4 55555544
No 22
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.85 E-value=1e-08 Score=93.15 Aligned_cols=110 Identities=22% Similarity=0.240 Sum_probs=72.0
Q ss_pred cceEEE---eCCc-EEEEEeC--CcEEEEcCccCCCCcccccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCChh
Q 026296 78 VFKLTY---LEGN-SWLWDLD--GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLK 150 (240)
Q Consensus 78 ~~~it~---lGhs-s~li~~~--g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~~ 150 (240)
.|+|+. +..| +|+|..+ +..++|||. .+. ++ + +. +++.. ++++||+||.|+||.+
T Consensus 75 ~~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~---~a~-~v--l-----~~-----l~~~g~~L~~ILlTH~H~DH~G-- 136 (329)
T PLN02398 75 SLQIELVPCLKDNYAYLLHDEDTGTVGVVDPS---EAV-PV--I-----DA-----LSRKNRNLTYILNTHHHYDHTG-- 136 (329)
T ss_pred CcEEEEEeeeCceEEEEEEECCCCEEEEEcCC---CHH-HH--H-----HH-----HHhcCCCceEEEECCCCchhhC--
Confidence 455544 4555 9999753 578999993 222 21 1 10 12222 6899999999999997
Q ss_pred hHHHhhhhCCCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCC
Q 026296 151 TLKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 212 (240)
Q Consensus 151 tl~~l~~~~p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~ 212 (240)
.+..|.+++ +++||++......+.. ....++.|+++.++ +..+++..+|||+.|.
T Consensus 137 G~~~L~~~~-ga~V~g~~~~~~~i~~---~d~~v~dGd~i~lg---g~~l~vi~tPGHT~Gh 191 (329)
T PLN02398 137 GNLELKARY-GAKVIGSAVDKDRIPG---IDIVLKDGDKWMFA---GHEVLVMETPGHTRGH 191 (329)
T ss_pred CHHHHHHhc-CCEEEEehHHhhhccC---CcEEeCCCCEEEEC---CeEEEEEeCCCcCCCC
Confidence 677777765 6888887654433221 23457899999983 1246777889988764
No 23
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.80 E-value=3.4e-08 Score=86.31 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=62.2
Q ss_pred cEEEEEeCC-cEEEEcCccCCCCcccccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCChhhHHHhhhhCCCCeE
Q 026296 87 NSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (240)
Q Consensus 87 ss~li~~~g-~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v 164 (240)
.+|+|..++ ..+||||.. .. ++ . +. +++.. ++++|++||.|.||++ .+..+.++++ +++
T Consensus 11 ~~yli~~~~~~~ilID~g~---~~-~i--~-----~~-----l~~~g~~l~~Il~TH~H~DHig--G~~~l~~~~~-~~V 71 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGE---AE-PV--L-----DA-----LEARGLTLTAILLTHHHHDHVG--GVAELLEAFP-APV 71 (248)
T ss_pred EEEEEEcCCCCEEEEcCCC---hH-HH--H-----HH-----HHHcCCeeeEEEeCCCCccccC--CHHHHHHHCC-CeE
Confidence 357776654 899999942 11 11 1 11 11222 5899999999999997 6777777664 888
Q ss_pred EEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCC
Q 026296 165 IATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG 211 (240)
Q Consensus 165 ~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g 211 (240)
|++... ........+..|++++++ +..+++..+|||..|
T Consensus 72 ~~~~~~-----~~~~~~~~v~~g~~~~~g---~~~i~v~~tpGHT~g 110 (248)
T TIGR03413 72 YGPAEE-----RIPGITHPVKDGDTVTLG---GLEFEVLAVPGHTLG 110 (248)
T ss_pred Eecccc-----cCCCCcEEeCCCCEEEEC---CEEEEEEECCCCCcc
Confidence 876543 111224568899999993 124555667887654
No 24
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.80 E-value=1.7e-08 Score=88.39 Aligned_cols=99 Identities=23% Similarity=0.379 Sum_probs=65.5
Q ss_pred EEEEEe-CCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCChhhHHHhhhhCCCCeEE
Q 026296 88 SWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVI 165 (240)
Q Consensus 88 s~li~~-~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~ 165 (240)
+|+|.. ++..+||||.. +. ++ + .. +++.. .+++||+||.|+||++ .+..|.++++++++|
T Consensus 14 ~~li~~~~~~~ilIDpg~---~~-~v--l-----~~-----l~~~g~~l~~IllTH~H~DHig--G~~~l~~~~~~~~V~ 75 (251)
T PRK10241 14 IWVLNDEAGRCLIVDPGE---AE-PV--L-----NA-----IAENNWQPEAIFLTHHHHDHVG--GVKELVEKFPQIVVY 75 (251)
T ss_pred EEEEEcCCCcEEEECCCC---hH-HH--H-----HH-----HHHcCCccCEEEeCCCCchhhc--cHHHHHHHCCCCEEE
Confidence 366754 46899999942 22 21 1 11 12222 5689999999999997 677888888788888
Q ss_pred EccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCC
Q 026296 166 ATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 212 (240)
Q Consensus 166 ~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~ 212 (240)
++..... ......+..|++++++ +..+++..+|||+.|.
T Consensus 76 ~~~~~~~-----~~~~~~v~~g~~i~ig---~~~~~vi~tPGHT~gh 114 (251)
T PRK10241 76 GPQETQD-----KGTTQVVKDGETAFVL---GHEFSVFATPGHTLGH 114 (251)
T ss_pred ecccccc-----cCCceEeCCCCEEEeC---CcEEEEEEcCCCCccc
Confidence 7543211 1123567889999983 1347777889987764
No 25
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.77 E-value=5.4e-08 Score=87.15 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=73.8
Q ss_pred eCCcEEEEEeC----CcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCC-ChhhHHH---h
Q 026296 84 LEGNSWLWDLD----GVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC-HLKTLKP---L 155 (240)
Q Consensus 84 lGhss~li~~~----g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHl-d~~tl~~---l 155 (240)
-+.+|++|+.+ +.++|||+ |... -.... .. --++.++|+|+|||.|.||+ +...+.. +
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~---G~g~-~~~l~---------~~-~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~ 80 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDC---GEGT-QHQLL---------HT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 80 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEEC---CccH-HHHHH---------Hh-CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHh
Confidence 45789999974 37899997 4222 11111 00 11345789999999999999 4444421 1
Q ss_pred hhhCCCCeEEEccChHHHHhhh----------cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEE
Q 026296 156 SKMSPNLKVIATPNAKTLLDPL----------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIM 225 (240)
Q Consensus 156 ~~~~p~~~v~~~p~~~~~l~~~----------~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~ 225 (240)
..+...++||.++...+.++.. ..++.++..++.++. ++++|+++|..|.. +..||.|.+
T Consensus 81 ~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~v~~~~~~H~~-----~~~gy~i~~ 150 (303)
T TIGR02649 81 SGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDD-----GLRKVTAYPLEHPL-----ECYGYRIEE 150 (303)
T ss_pred cCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEec-----CCeEEEEEEccCcc-----ceEEEEEec
Confidence 1111246777765444444432 124577888887777 78999999998852 246888854
No 26
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.74 E-value=2.3e-08 Score=87.66 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=68.2
Q ss_pred eCCcEEEEEe----CCcEEEEcCccCCCCccc-ccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCChhhHHHhhh
Q 026296 84 LEGNSWLWDL----DGVKVLVDPILVGNLDFG-IPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHLKTLKPLSK 157 (240)
Q Consensus 84 lGhss~li~~----~g~~ILiDP~~~~~~~~p-~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~~tl~~l~~ 157 (240)
++++||+|-. ++..+||||.... .. . ..+ +++.. ++.+||+||.|.||+. .+..|++
T Consensus 21 ~~~~~Yll~d~~~~~~~avlIDP~~~~-~~-~~l~~-------------l~~~g~~i~~Il~TH~H~DHig--g~~~l~~ 83 (251)
T PLN02962 21 SSTYTYLLADVSHPDKPALLIDPVDKT-VD-RDLSL-------------VKELGLKLIYAMNTHVHADHVT--GTGLLKT 83 (251)
T ss_pred ceeEEEEEEeCCCCCCEEEEECCCCCc-HH-HHHHH-------------HHHCCCeeEEEEcCCCCchhHH--HHHHHHH
Confidence 4789999965 3678999994211 11 0 111 12222 5789999999999996 5677777
Q ss_pred hCCCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCC
Q 026296 158 MSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 212 (240)
Q Consensus 158 ~~p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~ 212 (240)
+++++++++.... . ...-..++.|+++.++ +..+++..+|||+.|.
T Consensus 84 ~~~~a~v~~~~~~-----~-~~~d~~l~~g~~i~~g---~~~l~vi~tPGHT~g~ 129 (251)
T PLN02962 84 KLPGVKSIISKAS-----G-SKADLFVEPGDKIYFG---DLYLEVRATPGHTAGC 129 (251)
T ss_pred HCCCCeEEecccc-----C-CCCCEEeCCCCEEEEC---CEEEEEEECCCCCcCc
Confidence 7778888875421 1 1112357899999993 1246778899998764
No 27
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.4e-07 Score=87.11 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=81.3
Q ss_pred eCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCe
Q 026296 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (240)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~ 163 (240)
.|.+|.+++.++.+||+|+.+.. .. +. +.+ |+.. ..+++|+|+|||.|-||++ .+..+....=+.+
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~-~~-~~--------~~~-p~~~-~~~~vDavllTHaHlDH~g--~lp~l~~~~~~~~ 77 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFP-GD-PS--------PER-PLLP-PFPKVDAVLLTHAHLDHIG--ALPYLVRNGFEGP 77 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCc-Cc-CC--------ccC-CCCC-CCCCcCEEEeccCchhhhc--ccHHHHHhccCCc
Confidence 46799999999999999985432 11 10 011 1111 2337999999999999997 4444433211368
Q ss_pred EEEccChHHHHh----hh---c-----------------CceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCCCCCCcc
Q 026296 164 VIATPNAKTLLD----PL---F-----------------QNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPPWQRPEN 219 (240)
Q Consensus 164 v~~~p~~~~~l~----~~---~-----------------~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~ 219 (240)
+|+++....+.+ +. . .++..++.|+++++ ++++|++.||-|.-. ..
T Consensus 78 v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v-----~~~~v~~~~AGHilG-----sa 147 (427)
T COG1236 78 VYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEV-----GGVKVTFYNAGHILG-----SA 147 (427)
T ss_pred eeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEe-----eeEEEEEecCCCccc-----ee
Confidence 899988765322 11 1 34566999999999 679999999988621 24
Q ss_pred eEEEEEeCCCEEE
Q 026296 220 GVLCIMQVSRQFF 232 (240)
Q Consensus 220 G~vi~~~~~~~~y 232 (240)
.|.++..++..+|
T Consensus 148 ~~~le~~~~~ily 160 (427)
T COG1236 148 AILLEVDGGRILY 160 (427)
T ss_pred EEEEEeCCceEEE
Confidence 6677333333355
No 28
>PRK02126 ribonuclease Z; Provisional
Probab=98.68 E-value=1.6e-07 Score=85.67 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=50.6
Q ss_pred eEEEeCCcEEEEEe--CCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCC-hhhHHHhh
Q 026296 80 KLTYLEGNSWLWDL--DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH-LKTLKPLS 156 (240)
Q Consensus 80 ~it~lGhss~li~~--~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld-~~tl~~l~ 156 (240)
...-+..||++|.. +|.++|||+ |. . .++. ..++.++|+|+|||.|+||+. .+.|....
T Consensus 10 ~~g~~~dn~~~l~~~~~~~~iLiD~---G~-~--~~l~------------~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 10 VNGPFDDPGLYVDFLFERRALLFDL---GD-L--HHLP------------PRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred ecCCCCCcEEEEEECCCCeEEEEcC---CC-H--HHHh------------hcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 34567889999986 489999998 42 1 1111 235668999999999999994 44554322
Q ss_pred -hhCCCCeEEEccChHHHHh
Q 026296 157 -KMSPNLKVIATPNAKTLLD 175 (240)
Q Consensus 157 -~~~p~~~v~~~p~~~~~l~ 175 (240)
.+.+.+++|+++...+.++
T Consensus 72 ~~r~~~l~iygp~~~~~~l~ 91 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVE 91 (334)
T ss_pred ccCCCCeEEEECHHHHHHHH
Confidence 1123577777665544443
No 29
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.66 E-value=1.6e-07 Score=88.20 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=80.4
Q ss_pred cceEEEeC------CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCC--CccEEEecCCCCCCCCh
Q 026296 78 VFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCHL 149 (240)
Q Consensus 78 ~~~it~lG------hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp--~iD~VLISH~H~DHld~ 149 (240)
-.++|.|| -||+++++...+||+|+.....+. + ...++-+..-++. .+|||+|||.|.||++
T Consensus 180 wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~-~--------~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G- 249 (637)
T COG1782 180 WVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGN-G--------EDAFPYLDVPEFQPDELDAVIITHAHLDHCG- 249 (637)
T ss_pred eEEEEeeccchhccceeEEEecCCceEEEeccccCCCC-c--------cccCcccccccccccccceEEEeeccccccc-
Confidence 36788887 499999999999999986653111 1 1233322233332 6899999999999997
Q ss_pred hhHHHhhh-hCCCCeEEEccChHH---HHhh-h---------------------cCceEEeCCCCeEEEceecCCcEEEE
Q 026296 150 KTLKPLSK-MSPNLKVIATPNAKT---LLDP-L---------------------FQNVTYVEPGQSSEIEGRNGSKLRVK 203 (240)
Q Consensus 150 ~tl~~l~~-~~p~~~v~~~p~~~~---~l~~-~---------------------~~~i~~l~~ge~~~l~~~~~~~~~I~ 203 (240)
.|.-|-+ .| +-||||++.... +|.. . ..+.+.|+.|+...+. .++++|
T Consensus 250 -~lP~LfkYgy-~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa----PDirLT 323 (637)
T COG1782 250 -FLPLLFKYGY-DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA----PDIRLT 323 (637)
T ss_pred -chhhhhhcCC-CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC----CccEEE
Confidence 4444433 23 568999987655 2221 1 1356789999999995 899999
Q ss_pred EEcCCCC
Q 026296 204 ATAGPVL 210 (240)
Q Consensus 204 ~~Pa~h~ 210 (240)
+.-|-|.
T Consensus 324 f~NAGHI 330 (637)
T COG1782 324 FYNAGHI 330 (637)
T ss_pred Eecccch
Confidence 9876653
No 30
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.63 E-value=4e-08 Score=85.50 Aligned_cols=73 Identities=26% Similarity=0.342 Sum_probs=51.4
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhh-CCCCeEE
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKM-SPNLKVI 165 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~-~p~~~v~ 165 (240)
=|+||+.++.+||+|- +.. +..++.+ ...+ -.++..+|+|+|||+||||.+ .|..+.+. .+++++|
T Consensus 23 fS~LVE~~~~riLFDt---G~~--~~~ll~N-----a~~l-gvd~~did~vvlSHgH~DH~G--GL~~~~~~~~~~i~v~ 89 (259)
T COG1237 23 FSALVEDEGTRILFDT---GTD--SDVLLHN-----ARLL-GVDLRDIDAVVLSHGHYDHTG--GLPYLLEENNPGIPVY 89 (259)
T ss_pred eEEEEEcCCeEEEEeC---CCC--cHHHHHH-----HHHc-CCCcccCcEEEEeCCCccccC--chHhHHhccCCCceEE
Confidence 4789999999999996 311 1223321 1111 235568899999999999997 67766553 3789999
Q ss_pred EccChHH
Q 026296 166 ATPNAKT 172 (240)
Q Consensus 166 ~~p~~~~ 172 (240)
++|...+
T Consensus 90 ahp~af~ 96 (259)
T COG1237 90 AHPDAFK 96 (259)
T ss_pred eChHHHh
Confidence 9998755
No 31
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.59 E-value=2.8e-08 Score=80.16 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=46.5
Q ss_pred EeCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCC
Q 026296 83 YLEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNL 162 (240)
Q Consensus 83 ~lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~ 162 (240)
+.+.|||+|+.++..|||||....... . .. . .........+|++|++||.|.||++ .+..+.++.+..
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~--~-~~-----~--~~~~~~~~~~i~~vi~TH~H~DH~g--gl~~~~~~~~~~ 70 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFA--K-EL-----E--LALLGISGEDIDAVILTHAHPDHIG--GLPELLEAGPVV 70 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHH--H-HH-----H--HHHHHHTGGGEEEEEESSSSHHHHT--THHHHHHHTTEE
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhh--H-Hh-----h--hhHhhccCCCeEEEEECcccccccc--ccccccccccee
Confidence 567899999999999999995442111 1 00 0 0000123447899999999999997 677777775434
Q ss_pred e
Q 026296 163 K 163 (240)
Q Consensus 163 ~ 163 (240)
.
T Consensus 71 ~ 71 (194)
T PF00753_consen 71 I 71 (194)
T ss_dssp E
T ss_pred e
Confidence 3
No 32
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.50 E-value=1.4e-06 Score=75.67 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=72.4
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccC--c--cC----------CCC-CCCccEEEecCCCCCCCCh--
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--S--FQ----------LSD-LPQVDCLLITQSLDDHCHL-- 149 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~--~--~~----------~~~-lp~iD~VLISH~H~DHld~-- 149 (240)
-+.+|++.+..|||||..+- . | +|+. | .. +.+ ..+.|.|.|||-||||.+.
T Consensus 16 mAt~vet~dv~ILiDpGVsL--a-P---------kRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~ 83 (304)
T COG2248 16 MATFVETKDVGILIDPGVSL--A-P---------KRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFF 83 (304)
T ss_pred hhheeecCCeeEEECCcccc--C-c---------cccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccc
Confidence 35678999999999994331 1 2 3332 1 11 112 2478999999999999985
Q ss_pred -----h---hHHHhhhhCCCCeEEE-ccC-hHH---------HHhhh--cCceEEeCCCCeEEEceecCCcEEEEEEcCC
Q 026296 150 -----K---TLKPLSKMSPNLKVIA-TPN-AKT---------LLDPL--FQNVTYVEPGQSSEIEGRNGSKLRVKATAGP 208 (240)
Q Consensus 150 -----~---tl~~l~~~~p~~~v~~-~p~-~~~---------~l~~~--~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~ 208 (240)
. +-+.|-+ +-.+++ .|. ..+ .|++. ..+-++...|.++++ ++.+|.+-|.-
T Consensus 84 ~~~y~~s~e~~~eiY~---gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~f-----G~t~IefS~pv 155 (304)
T COG2248 84 DGIYEASGETAKEIYK---GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEF-----GGTVIEFSPPV 155 (304)
T ss_pred cchhhhcccchHHHhc---CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEe-----CCEEEEecCCC
Confidence 2 2233332 322222 231 111 22222 234577889999999 89999987765
Q ss_pred CCCCCCCCCcceEEEE---EeCCCEEEEcc
Q 026296 209 VLGPPWQRPENGVLCI---MQVSRQFFTRP 235 (240)
Q Consensus 209 h~g~~~~~~~~G~vi~---~~~~~~~y~~~ 235 (240)
.-|. .+...|||+. +.++.++-+++
T Consensus 156 pHG~--eGskLGyVl~v~V~dg~~~i~faS 183 (304)
T COG2248 156 PHGR--EGSKLGYVLMVAVTDGKSSIVFAS 183 (304)
T ss_pred CCCC--cccccceEEEEEEecCCeEEEEcc
Confidence 3333 1234577764 23344444443
No 33
>PRK00055 ribonuclease Z; Reviewed
Probab=98.49 E-value=1.3e-07 Score=82.24 Aligned_cols=83 Identities=24% Similarity=0.253 Sum_probs=50.4
Q ss_pred ceEEEeC-----------CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCC
Q 026296 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (240)
Q Consensus 79 ~~it~lG-----------hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHl 147 (240)
|+|+.|| .+|++|+.++.+||||+ |... ..+... . -.++.++|+|+|||.|.||+
T Consensus 2 m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~---G~g~-~~~l~~----~------~~~~~~i~~i~lTH~H~DHi 67 (270)
T PRK00055 2 MELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDC---GEGT-QRQLLK----T------GIKPRKIDKIFITHLHGDHI 67 (270)
T ss_pred eEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEEC---CHHH-HHHHHH----c------CCCHHHCCEEEEeCCCchhh
Confidence 5666666 79999999999999997 3221 111110 0 11344789999999999999
Q ss_pred C-hhhHHHhh---hhCCCCeEEEccChHHHHh
Q 026296 148 H-LKTLKPLS---KMSPNLKVIATPNAKTLLD 175 (240)
Q Consensus 148 d-~~tl~~l~---~~~p~~~v~~~p~~~~~l~ 175 (240)
. +..+.... ++...+++|+++...+.++
T Consensus 68 ~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~ 99 (270)
T PRK00055 68 FGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVE 99 (270)
T ss_pred CcHHHHHHHhhhcCCCceEEEECCccHHHHHH
Confidence 5 44443211 1112456776554444443
No 34
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.45 E-value=6.3e-07 Score=78.71 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=49.2
Q ss_pred CCCCCccEEEecCCCCCCCChhhHHHhhhhCC-CCeEEEcc-ChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEE--
Q 026296 129 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSP-NLKVIATP-NAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKA-- 204 (240)
Q Consensus 129 ~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p-~~~v~~~p-~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~-- 204 (240)
++...+++||.||-|+||.+ .+..|.+.++ ++++|... .... .+ -..++.+|++.+ ++++|++
T Consensus 47 ~~~~~l~~Il~THhH~DHsG--Gn~~i~~~~~~~~~v~g~~~~r~~---~i---~~~~~~~e~~~~-----~g~~v~~l~ 113 (265)
T KOG0813|consen 47 DENRRLTAILTTHHHYDHSG--GNEDIKREIPYDIKVIGGADDRIP---GI---TRGLKDGETVTV-----GGLEVRCLH 113 (265)
T ss_pred hccCceeEEEeccccccccC--cHHHHHhhccCCcEEecCChhcCc---cc---cccCCCCcEEEE-----CCEEEEEEe
Confidence 35568999999999999997 6777777644 67776653 1111 11 122789999999 5655554
Q ss_pred EcCCCCCC
Q 026296 205 TAGPVLGP 212 (240)
Q Consensus 205 ~Pa~h~g~ 212 (240)
|||++.|.
T Consensus 114 TPgHT~~h 121 (265)
T KOG0813|consen 114 TPGHTAGH 121 (265)
T ss_pred CCCccCCc
Confidence 68887653
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.43 E-value=1.2e-06 Score=74.23 Aligned_cols=111 Identities=25% Similarity=0.234 Sum_probs=62.8
Q ss_pred CcEEEEEeCC-cEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeE
Q 026296 86 GNSWLWDLDG-VKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKV 164 (240)
Q Consensus 86 hss~li~~~g-~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v 164 (240)
.+++++..++ ..+|||+.+..... ..+. .... .... +|++|++||.|+||+. .+..+.+..+.+++
T Consensus 25 ~~~~~~~~~~~~~~liD~G~~~~~~---~~~~----~~l~---~~~~-~i~~vilTH~H~DH~g--g~~~~~~~~~~~~~ 91 (252)
T COG0491 25 NSVYLLVDGEGGAVLIDTGLGDADA---EALL----EALA---ALGL-DVDAILLTHGHFDHIG--GAAVLKEAFGAAPV 91 (252)
T ss_pred ccEEEEEcCCCceEEEeCCCCchHH---HHHH----HHHH---HcCC-ChheeeecCCchhhhc--cHHHHHhhcCCceE
Confidence 3445554444 89999986543101 0110 0000 1111 7999999999999997 56566654333666
Q ss_pred EEccChHHHHhh------------h----cCceEEeCCCCeEEEceecCCcEEEEEEcCCCCCC
Q 026296 165 IATPNAKTLLDP------------L----FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGP 212 (240)
Q Consensus 165 ~~~p~~~~~l~~------------~----~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~ 212 (240)
+..+........ . ......+..++.+.++ +.++++..+|||+.|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~tpGHT~g~ 152 (252)
T COG0491 92 IAPAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLG---GLELEVLHTPGHTPGH 152 (252)
T ss_pred EccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEec---CeEEEEEECCCCCCCe
Confidence 333322222111 1 1223445578888883 1248999999998864
No 36
>PRK11539 ComEC family competence protein; Provisional
Probab=98.18 E-value=2e-05 Score=79.09 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=66.3
Q ss_pred CCcceEEEe--CC-cEEEEEeCCcEEEEcCccCCCCcccccccccCCCccc-CccCCCCCCCccEEEecCCCCCCCChhh
Q 026296 76 TDVFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKT 151 (240)
Q Consensus 76 ~~~~~it~l--Gh-ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~-~~~~~~~lp~iD~VLISH~H~DHld~~t 151 (240)
+.+.+++.+ || .+.+|+.+|+++|+|+. ... +..-.+ .+.+ +-+....+ ++|+|+|||.|.||.+ .
T Consensus 498 ~~~~~v~~lDVGqG~a~li~~~~~~lLiDtG---~~~-~~~~~~---~~~i~P~L~~~Gi-~lD~lilSH~d~DH~G--G 567 (755)
T PRK11539 498 EYEWRVDMLDVGHGLAVVIERNGKAILYDTG---NAW-PTGDSA---QQVIIPWLRWHGL-TPEGIILSHEHLDHRG--G 567 (755)
T ss_pred CCcEEEEEEEccCceEEEEEECCEEEEEeCC---CCC-CCCcch---HHHHHHHHHHcCC-CcCEEEeCCCCcccCC--C
Confidence 355677775 65 67889999999999983 111 100000 0111 11223344 5999999999999997 6
Q ss_pred HHHhhhhCCCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEE
Q 026296 152 LKPLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT 205 (240)
Q Consensus 152 l~~l~~~~p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~ 205 (240)
+..+.+++|..+++.+ .+.. +......|+++++ +++++.++
T Consensus 568 l~~Ll~~~~~~~i~~~-~~~~-------~~~~~~~g~~~~~-----~~~~~~vL 608 (755)
T PRK11539 568 LASLLHAWPMAWIRSP-LNWA-------NHLPCVRGEQWQW-----QGLTFSVH 608 (755)
T ss_pred HHHHHHhCCcceeecc-Cccc-------CcccccCCCeEeE-----CCEEEEEE
Confidence 6777777666665543 2111 1223456888888 67777776
No 37
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.15 E-value=4e-05 Score=75.90 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=68.8
Q ss_pred cceEEEe--CC-cEEEEEeCCcEEEEcCccCCCCcccccccccCCCccc-CccCCCCCCCccEEEecCCCCCCCChhhHH
Q 026296 78 VFKLTYL--EG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFL-KSFQLSDLPQVDCLLITQSLDDHCHLKTLK 153 (240)
Q Consensus 78 ~~~it~l--Gh-ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~-~~~~~~~lp~iD~VLISH~H~DHld~~tl~ 153 (240)
+.+++++ |+ .|.+|+.+++++|||.. ... +..-.+ .+.+ +-+.-..+. +|+|++||.|.||.+ .+.
T Consensus 439 ~~~v~~lDVGqGdaili~~~~~~iLIDtG---~~~-~~~~~~---~~~l~p~L~~~Gi~-ID~lilTH~d~DHiG--Gl~ 508 (662)
T TIGR00361 439 SWQVDMLDVGQGLAMFIGANGKGILYDTG---EPW-REGSLG---EKVIIPFLTAKGIK-LEALILSHADQDHIG--GAE 508 (662)
T ss_pred CEEEEEEecCCceEEEEEECCeEEEEeCC---CCC-CCCCcc---HHHHHHHHHHcCCC-cCEEEECCCchhhhC--cHH
Confidence 5677776 44 78889999999999973 211 110000 0111 112233454 999999999999997 567
Q ss_pred HhhhhCCCCeEEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEE
Q 026296 154 PLSKMSPNLKVIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT 205 (240)
Q Consensus 154 ~l~~~~p~~~v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~ 205 (240)
.+.++++-..++. +.+... ....+.++..|+++++ +++++.++
T Consensus 509 ~ll~~~~v~~i~~-~~~~~~---~~~~~~~~~~G~~~~~-----~~~~~~vL 551 (662)
T TIGR00361 509 IILKHHPVKRLVI-PKGFVE---EGVAIEECKRGDVWQW-----QGLQFHVL 551 (662)
T ss_pred HHHHhCCccEEEe-ccchhh---CCCceEecCCCCEEeE-----CCEEEEEE
Confidence 7777665445544 433211 0123566788999999 78888887
No 38
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.02 E-value=2.5e-05 Score=70.02 Aligned_cols=61 Identities=30% Similarity=0.317 Sum_probs=40.7
Q ss_pred ceEEEeC-----------CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCC
Q 026296 79 FKLTYLE-----------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHC 147 (240)
Q Consensus 79 ~~it~lG-----------hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHl 147 (240)
|++++|| .++++|+.+|..+|+|+ |... -.++.. .-....++|+|+|||.|.||+
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~Dc---GeGt-~~~l~~----------~~~~~~~i~~IfITH~H~DHi 67 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDC---GEGT-QHQLLR----------AGLPPRKIDAIFITHLHGDHI 67 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEEC---CHhH-HHHHHH----------hcCChhhccEEEeeccccchh
Confidence 5666666 47889999999999997 4332 111110 011223789999999999998
Q ss_pred -ChhhHH
Q 026296 148 -HLKTLK 153 (240)
Q Consensus 148 -d~~tl~ 153 (240)
|+..+.
T Consensus 68 ~gL~~ll 74 (292)
T COG1234 68 AGLPGLL 74 (292)
T ss_pred cCcHHHH
Confidence 555543
No 39
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.00 E-value=7.3e-05 Score=67.58 Aligned_cols=108 Identities=19% Similarity=0.353 Sum_probs=67.3
Q ss_pred eCCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCC----CCCC-CccEEEecCCCCCCCC-hhhHHHhhh
Q 026296 84 LEGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQL----SDLP-QVDCLLITQSLDDHCH-LKTLKPLSK 157 (240)
Q Consensus 84 lGhss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~----~~lp-~iD~VLISH~H~DHld-~~tl~~l~~ 157 (240)
+|-||.|+.++|++|++|....- . + +..+||+.++. ..+. .||+|+|||-|.||++ ++-..++..
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHM----G--~---nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G 85 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHM----G--F---NDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG 85 (501)
T ss_pred cCceEEEEEECCcEEEEeccccc----c--c---CccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhC
Confidence 46799999999999999974321 1 1 11356653221 2333 6899999999999997 233333332
Q ss_pred hCCCCeEEEccChHH----HHhhh----------------------cCceEEeCCCCeEEEceecCCcEEEEEEc
Q 026296 158 MSPNLKVIATPNAKT----LLDPL----------------------FQNVTYVEPGQSSEIEGRNGSKLRVKATA 206 (240)
Q Consensus 158 ~~p~~~v~~~p~~~~----~l~~~----------------------~~~i~~l~~ge~~~l~~~~~~~~~I~~~P 206 (240)
| +-|+|.+-...+ +|+.. .++++.++-.|++++. .++.|++.=
T Consensus 86 -Y-~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD----~dl~IrayY 154 (501)
T KOG1136|consen 86 -Y-DGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD----EDLQIRAYY 154 (501)
T ss_pred -C-CCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec----ccceeeeee
Confidence 2 456676544332 33321 1357778888888884 677777643
No 40
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.96 E-value=9.1e-05 Score=71.97 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=77.7
Q ss_pred CCcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhh-hCCCCe
Q 026296 85 EGNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSK-MSPNLK 163 (240)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~-~~p~~~ 163 (240)
|.-|+++|++|.+|||||.|.... ..+.+. ++ ...++.||+|||||--.=|++ .|-.... ..-+++
T Consensus 14 ~~~cyllqiD~~~iLiDcGwd~~f--~~~~i~--------~l-~~~i~~iDaILLShpd~~hlG--aLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 14 GPLCYLLQIDGVRILIDCGWDESF--DMSMIK--------EL-KPVIPTIDAILLSHPDILHLG--ALPYAVGKLGLNAP 80 (764)
T ss_pred CcceEEEEEcCeEEEEeCCCcchh--ccchhh--------hh-hcccccccEEEecCCChHHhc--cchhhHhhCCccce
Confidence 456899999999999999887643 344431 11 345778999999999888987 4544333 223578
Q ss_pred EEEccChHH--------HHhh------h-----------cCceEEeCCCCeEEEceecCCcEEEEEEcCCCC
Q 026296 164 VIATPNAKT--------LLDP------L-----------FQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL 210 (240)
Q Consensus 164 v~~~p~~~~--------~l~~------~-----------~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~ 210 (240)
||++-...+ .++. . |++|++|.-.|.+.+.++. .|++|++.+|-|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~-~Gl~itaynAGhm 151 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKG-SGLTITAYNAGHM 151 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEecccc-CceEEeeecCCCc
Confidence 888744321 1111 0 5689999999999985332 5899999998764
No 41
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.84 E-value=0.0003 Score=63.11 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=66.2
Q ss_pred ceEEE--eCC-cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHh
Q 026296 79 FKLTY--LEG-NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPL 155 (240)
Q Consensus 79 ~~it~--lGh-ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l 155 (240)
.++.+ .|+ .+++++.++.++|+|..-. .+ .. .-++-+.-..+.+||.+++||.|.||.+ .+..+
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dtg~~--~~--~~-------~iip~Lk~~GV~~iD~lIlTH~d~DHiG--g~~~v 110 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDTGNS--MG--QD-------VIIPYLKSLGVRKLDQLILTHPDADHIG--GLDEV 110 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeecCcc--cC--ce-------eehhhHhHcCCccccEEEeccCCccccC--CHHHH
Confidence 34544 455 4899999999999998431 11 00 1112223456668999999999999997 55556
Q ss_pred hhhCCCCeEEEc-cChHH---HHhhhcCceEEeCCCCeEEEceecCCcEEEEEE
Q 026296 156 SKMSPNLKVIAT-PNAKT---LLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKAT 205 (240)
Q Consensus 156 ~~~~p~~~v~~~-p~~~~---~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~ 205 (240)
.+.++=-.+++. +.... .+++....+....-|+.+++ +++.++++
T Consensus 111 l~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-----~~~~f~vl 159 (293)
T COG2333 111 LKTIKVPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQW-----GGVVFQVL 159 (293)
T ss_pred HhhCCCCcEEEeCCCCccchhhhhhcCCceeccccCceEEE-----CCeEEEEE
Confidence 653211122332 22211 12222345677888999999 78888776
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.79 E-value=3.8e-05 Score=73.01 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCcceEEEeC------CcEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCCh
Q 026296 76 TDVFKLTYLE------GNSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHL 149 (240)
Q Consensus 76 ~~~~~it~lG------hss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~ 149 (240)
.+.+.++-|| -||.+++..|++|+.||.... +. + + ...++-++.-|++.+|.++|||-|.||+.
T Consensus 11 ~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhp-ay---s--g---~aslpf~d~vd~s~id~llIthFhldh~a- 80 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHP-AY---S--G---MASLPFYDEVDLSAIDPLLITHFHLDHAA- 80 (668)
T ss_pred CCcEEEEECCCCcccCceEEEEEecCeEEEeccccCc-cc---c--c---cccccchhhcccccccHHHHhhhhhhhcc-
Confidence 4556677665 699999999999999984331 11 1 1 12223344667889999999999999996
Q ss_pred hhHHHhhhhC-CCCeEEEccChHH---H-Hhhh---------------------cCceEEeCCCCeEEEceecCCcEEEE
Q 026296 150 KTLKPLSKMS-PNLKVIATPNAKT---L-LDPL---------------------FQNVTYVEPGQSSEIEGRNGSKLRVK 203 (240)
Q Consensus 150 ~tl~~l~~~~-p~~~v~~~p~~~~---~-l~~~---------------------~~~i~~l~~ge~~~l~~~~~~~~~I~ 203 (240)
++..+.++. =.-++|.+....+ + |... +.++...+-.|+.++ .++++.
T Consensus 81 -slp~~~qkTsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev-----~gIkf~ 154 (668)
T KOG1137|consen 81 -SLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEV-----NGIKFW 154 (668)
T ss_pred -cccceeeeccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeecccccc-----CCeEEE
Confidence 444333221 0234555544433 2 2211 134566777788888 899999
Q ss_pred EEcCCCCC
Q 026296 204 ATAGPVLG 211 (240)
Q Consensus 204 ~~Pa~h~g 211 (240)
+.-+-|++
T Consensus 155 p~~aGhVl 162 (668)
T KOG1137|consen 155 PYHAGHVL 162 (668)
T ss_pred eeccchhh
Confidence 98777764
No 43
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.71 E-value=2.8e-05 Score=64.37 Aligned_cols=91 Identities=31% Similarity=0.379 Sum_probs=56.1
Q ss_pred CCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCC-CccEEEecCCCCCCCCh-hhHHHhhhhCCCCeEEEcc-Ch
Q 026296 94 DGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLP-QVDCLLITQSLDDHCHL-KTLKPLSKMSPNLKVIATP-NA 170 (240)
Q Consensus 94 ~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp-~iD~VLISH~H~DHld~-~tl~~l~~~~p~~~v~~~p-~~ 170 (240)
+|..+|||||+.. ++--.+. +.||. ++-|-+-||.|.||+-. ..|+.+. |.++-+++. .|
T Consensus 31 ~~~AviIDPV~et-~~RD~ql-------------ikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~---pg~kSVis~~SG 93 (237)
T KOG0814|consen 31 TGKAVIIDPVLET-VSRDAQL-------------IKDLGLDLIYALNTHVHADHITGTGLLKTLL---PGCKSVISSASG 93 (237)
T ss_pred CCceEEecchhhc-ccchHHH-------------HHhcCceeeeeecceeecccccccchHHHhc---ccHHHHhhhccc
Confidence 6899999999863 2201111 45666 77888999999999942 2333332 454433321 11
Q ss_pred HHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCCC
Q 026296 171 KTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVLG 211 (240)
Q Consensus 171 ~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g 211 (240)
.+.-.-+..|+.++++ +--+++.++||++.|
T Consensus 94 -------akAD~~l~~Gd~i~~G---~~~le~ratPGHT~G 124 (237)
T KOG0814|consen 94 -------AKADLHLEDGDIIEIG---GLKLEVRATPGHTNG 124 (237)
T ss_pred -------cccccccCCCCEEEEc---cEEEEEecCCCCCCc
Confidence 1223446799999993 123667789999765
No 44
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.54 E-value=9.2e-05 Score=65.30 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.8
Q ss_pred CCccEEEecCCCCCCCChhhHHHhhh
Q 026296 132 PQVDCLLITQSLDDHCHLKTLKPLSK 157 (240)
Q Consensus 132 p~iD~VLISH~H~DHld~~tl~~l~~ 157 (240)
+.+|+||+||.|+||+. .+..|++
T Consensus 61 ~~idai~~TH~H~DHi~--Gl~~l~~ 84 (269)
T COG1235 61 SDLDAILLTHEHSDHIQ--GLDDLRR 84 (269)
T ss_pred cccCeEEEecccHHhhc--ChHHHHH
Confidence 47999999999999995 4444444
No 45
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.34 E-value=0.00068 Score=60.25 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=48.8
Q ss_pred CCCCCccEEEecCCCCCCCC-hhhHHH----hhhhCCCCeEEEccChHHHHhh---h---------c-CceEEeCCCCeE
Q 026296 129 SDLPQVDCLLITQSLDDHCH-LKTLKP----LSKMSPNLKVIATPNAKTLLDP---L---------F-QNVTYVEPGQSS 190 (240)
Q Consensus 129 ~~lp~iD~VLISH~H~DHld-~~tl~~----l~~~~p~~~v~~~p~~~~~l~~---~---------~-~~i~~l~~ge~~ 190 (240)
..+..++.|+|||.|.||+. +..+-. +..+-+...||+++...+..++ + + .++..+..++.+
T Consensus 36 ~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 115 (277)
T TIGR02650 36 KKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERF 115 (277)
T ss_pred hhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEE
Confidence 34557899999999999995 333222 2112123446655443444442 1 1 122223344444
Q ss_pred EEceecCCcEEEEEEcCCCCCCCCCCCcceEEEEE
Q 026296 191 EIEGRNGSKLRVKATAGPVLGPPWQRPENGVLCIM 225 (240)
Q Consensus 191 ~l~~~~~~~~~I~~~Pa~h~g~~~~~~~~G~vi~~ 225 (240)
.+. ..+..+.|.+.+..|.- ...+..||+|.+
T Consensus 116 ~~r-~~~~~~~V~~f~t~H~v--~~~~s~GY~~~~ 147 (277)
T TIGR02650 116 FLD-AAGFFKRVQPFFRKHHA--SEESFFGHHFEE 147 (277)
T ss_pred Eee-cCCccEEEecCcccccc--CccCccCeEEEE
Confidence 441 01124778888877752 122346888853
No 46
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.03 E-value=0.00033 Score=58.37 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=50.7
Q ss_pred CCcEEEEEeCCcEEEEcCccCCCCcc-cccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCe
Q 026296 85 EGNSWLWDLDGVKVLVDPILVGNLDF-GIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLK 163 (240)
Q Consensus 85 Ghss~li~~~g~~ILiDP~~~~~~~~-p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~ 163 (240)
+-||+++...+.+|||||+ +.+- -..+ +..+..+++|+|||. ||.- .-+.+++++ .++
T Consensus 22 dfng~~~~~p~GnilIDP~---~ls~~~~~~-------------l~a~ggv~~IvLTn~--dHvR--~A~~ya~~~-~a~ 80 (199)
T PF14597_consen 22 DFNGHAWRRPEGNILIDPP---PLSAHDWKH-------------LDALGGVAWIVLTNR--DHVR--AAEDYAEQT-GAK 80 (199)
T ss_dssp EEEEEEE--TT--EEES--------HHHHHH-------------HHHTT--SEEE-SSG--GG-T--THHHHHHHS---E
T ss_pred CceeEEEEcCCCCEEecCc---cccHHHHHH-------------HHhcCCceEEEEeCC--hhHh--HHHHHHHHh-CCe
Confidence 4477888788889999994 2220 0112 345668899999975 8983 444566665 789
Q ss_pred EEEccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCC-CCC
Q 026296 164 VIATPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGP-VLG 211 (240)
Q Consensus 164 v~~~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~-h~g 211 (240)
|+++....+.+. ..--..++.||++ + +++++.-+||+ +.|
T Consensus 81 i~~p~~d~~~~p--~~~D~~l~dge~i-~-----~g~~vi~l~G~ktpG 121 (199)
T PF14597_consen 81 IYGPAADAAQFP--LACDRWLADGEEI-V-----PGLWVIHLPGSKTPG 121 (199)
T ss_dssp EEEEGGGCCC-S--S--SEEE-TT-BS-S-----TTEEEEEE-SSSSTT
T ss_pred eeccHHHHhhCC--CCCccccccCCCc-c-----CceEEEEcCCCCCCc
Confidence 988765543211 2233567888844 3 79999999996 444
No 47
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=94.69 E-value=0.1 Score=49.74 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=51.5
Q ss_pred CCccEEEecCCCCCCCChhhHHHhhhhCCCCeEEEccChHHHHhhh----cCceEEeCCCCeEEEceecCCcEEEEEEcC
Q 026296 132 PQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATPNAKTLLDPL----FQNVTYVEPGQSSEIEGRNGSKLRVKATAG 207 (240)
Q Consensus 132 p~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~~~p~~~~~l~~~----~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa 207 (240)
+..-+=++||-|.||.- .| .+.+..-++||.+.+++++... ...+..++-++.+.+ .++.+++++|
T Consensus 111 ~~~s~yFLsHFHSDHy~--GL---~~sW~~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i-----~~~~vt~ldA 180 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYI--GL---TKSWSHPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEI-----PGIQVTLLDA 180 (481)
T ss_pred cccceeeeecccccccc--cc---cccccCCcccccccchhhhhhhcccChhhceeecCCCceee-----cceEEEEecc
Confidence 35567799999999953 33 2333233489999988844432 456888999999999 7899999999
Q ss_pred CCC
Q 026296 208 PVL 210 (240)
Q Consensus 208 ~h~ 210 (240)
.|.
T Consensus 181 nHC 183 (481)
T KOG1361|consen 181 NHC 183 (481)
T ss_pred ccC
Confidence 987
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=93.58 E-value=0.02 Score=56.60 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=44.2
Q ss_pred CcceEEEeCC-----------cEEEEEeCCc-EEEEcCccCCCCcccccccccCCCcccC-ccCCCCCCCccEEEecCCC
Q 026296 77 DVFKLTYLEG-----------NSWLWDLDGV-KVLVDPILVGNLDFGIPWLFDAGKKFLK-SFQLSDLPQVDCLLITQSL 143 (240)
Q Consensus 77 ~~~~it~lGh-----------ss~li~~~g~-~ILiDP~~~~~~~~p~~~~~~~~~~~~~-~~~~~~lp~iD~VLISH~H 143 (240)
+.++|..||. ++++++++.. +||.|. |...+ .+ + .|++- ......+.++.+|+|||.|
T Consensus 441 ~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDC---GEgTl-gq-l----~R~YG~~~~~~~lr~LraI~ISHlH 511 (746)
T KOG2121|consen 441 KDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDC---GEGTL-GQ-L----VRHYGVENVDTALRKLRAIFISHLH 511 (746)
T ss_pred CCcEEEEecCCccCCCcccceEEEEEeccCCccEEeec---CCchH-HH-H----HHHhhhcchHHHHHhHHHHHHHhhc
Confidence 5788999995 7889998654 599997 44442 11 2 13333 1112344578999999999
Q ss_pred CCCCC-hhhH
Q 026296 144 DDHCH-LKTL 152 (240)
Q Consensus 144 ~DHld-~~tl 152 (240)
.||-. +.++
T Consensus 512 ADHh~Gl~~v 521 (746)
T KOG2121|consen 512 ADHHLGLISV 521 (746)
T ss_pred ccccccHHHH
Confidence 99974 4443
No 49
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.02 E-value=0.065 Score=51.00 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=39.2
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcc-cccccccCCCcccCccCCCCCC--CccEEEecCCCCCCCChhhHHHhhh----hC
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDF-GIPWLFDAGKKFLKSFQLSDLP--QVDCLLITQSLDDHCHLKTLKPLSK----MS 159 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~-p~~~~~~~~~~~~~~~~~~~lp--~iD~VLISH~H~DHld~~tl~~l~~----~~ 159 (240)
|--+|+.+..-|+|||.......- ...+. -.+++ +|.+|+-||.|.||++ .++-+.+ ..
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~aAldl~------------~~~~g~rPV~aVIYtHsH~DHfG--GVkGiv~eadV~s 192 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAKAALDLY------------NQHRGQRPVVAVIYTHSHSDHFG--GVKGIVSEADVKS 192 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHHHHHHHH------------HHhcCCCCeEEEEeecccccccC--CeeeccCHHHccc
Confidence 445567777789999976532110 01111 12222 6899999999999997 3332222 12
Q ss_pred CCCeEEEc
Q 026296 160 PNLKVIAT 167 (240)
Q Consensus 160 p~~~v~~~ 167 (240)
.+++|+++
T Consensus 193 GkV~iiAP 200 (655)
T COG2015 193 GKVQIIAP 200 (655)
T ss_pred CceeEecc
Confidence 46776664
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=79.42 E-value=1.3 Score=40.71 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=27.7
Q ss_pred CccEEEecCCCCCCCChhhHHH--hhhh-CCCCeEEEccChHHHHhh
Q 026296 133 QVDCLLITQSLDDHCHLKTLKP--LSKM-SPNLKVIATPNAKTLLDP 176 (240)
Q Consensus 133 ~iD~VLISH~H~DHld~~tl~~--l~~~-~p~~~v~~~p~~~~~l~~ 176 (240)
.|...||||.|-||+..-.+.. +... ...-++|..+...+.|+.
T Consensus 79 ~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~ 125 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKN 125 (335)
T ss_pred hhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHH
Confidence 6889999999999996211111 1110 013457788888876665
No 51
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=4.3 Score=36.46 Aligned_cols=94 Identities=20% Similarity=0.159 Sum_probs=53.5
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeEEE
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIA 166 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~~ 166 (240)
+.-++..++..+++|-.++. +. ++ -.-+..||.|++||.|.+|++ .+..+ +..++++
T Consensus 96 ~~tl~~d~~~v~v~~~gls~--------la---k~------~vt~d~i~~vv~t~~~~~hlg--n~~~f----~~sp~l~ 152 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLSV--------LA---KE------GVTLDQIDSVVITHKSPGHLG--NNNLF----PQSPILY 152 (302)
T ss_pred ccceeecCCceEEEecCCch--------hh---hc------CcChhhcceeEEeccCccccc--ccccc----cCCHHHh
Confidence 33455567788999964431 10 11 112336899999999999997 22111 2233221
Q ss_pred ccChHHHHhhhcCceEEeCCCCeEEEceecCCcEEEEEEcCCCC
Q 026296 167 TPNAKTLLDPLFQNVTYVEPGQSSEIEGRNGSKLRVKATAGPVL 210 (240)
Q Consensus 167 ~p~~~~~l~~~~~~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~ 210 (240)
.. .....+ .-.-++++....++++ .+++|..+||+..
T Consensus 153 ~s--~e~~gr-~~~pt~l~e~~~~~l~----~~~~V~~TpGht~ 189 (302)
T KOG4736|consen 153 HS--MEYIGR-HVTPTELDERPYLKLS----PNVEVWKTPGHTQ 189 (302)
T ss_pred hh--hhhcCC-ccChhhhccCCccccC----CceeEeeCCCCCC
Confidence 11 000000 0112457777888885 7899999999864
No 52
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=75.05 E-value=1.5 Score=43.79 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=34.6
Q ss_pred cEEEEEeCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCC
Q 026296 87 NSWLWDLDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCH 148 (240)
Q Consensus 87 ss~li~~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld 148 (240)
-+-|+-.+|.+||++= +++|-+ ++ |-. +..+.+||+|||||.-.|.|.
T Consensus 49 daALFavnGf~iLv~G-gserKS-~f-wkl-----------VrHldrVdaVLLthpg~dNLp 96 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNG-GSERKS-CF-WKL-----------VRHLDRVDAVLLTHPGADNLP 96 (934)
T ss_pred cceeEeecceEEeecC-Cccccc-ch-HHH-----------HHHHhhhhhhhhcccccCccc
Confidence 4566778999999994 344444 32 211 446678999999999999995
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=71.57 E-value=13 Score=33.45 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=75.0
Q ss_pred cceEEEeCCcEEEEEe-CCcEEEEcCccCCCCcccccccccCCCcccC--cc---CCCCCCCccEEEecCCCCCCCChhh
Q 026296 78 VFKLTYLEGNSWLWDL-DGVKVLVDPILVGNLDFGIPWLFDAGKKFLK--SF---QLSDLPQVDCLLITQSLDDHCHLKT 151 (240)
Q Consensus 78 ~~~it~lGhss~li~~-~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~--~~---~~~~lp~iD~VLISH~H~DHld~~t 151 (240)
.+....+.|-+-.|+. -+..+=||||.+.... -..+..+ ..+. +. ..+=...|.--+|||.|-||+....
T Consensus 55 ~l~~~~~~hds~p~el~~d~~Lsv~~g~s~~l~--~~~~~~~--e~~~~A~~~~~~y~~~Q~I~~y~ITH~HLDHIsGlV 130 (356)
T COG5212 55 NLTSYLIRHDSQPLELGLDAGLSVLPGISRALE--KGHFAAI--EDAMAAPLTRQGYIFRQSINSYFITHAHLDHISGLV 130 (356)
T ss_pred ccchhhhhccchhhhhhhccCcccccchHHHHH--hhhhhhh--hhhhhcchhhhhhhhhhhhhheEeccccccchhcee
Confidence 3344455677777765 3456677887763111 0010000 0000 00 0111235666799999999996333
Q ss_pred HH--HhhhhCCCCeEEEccChHHHHhhh-cC---------------ceEEeCCCCeEEEceecCCcEEEEEEcCCCCCCC
Q 026296 152 LK--PLSKMSPNLKVIATPNAKTLLDPL-FQ---------------NVTYVEPGQSSEIEGRNGSKLRVKATAGPVLGPP 213 (240)
Q Consensus 152 l~--~l~~~~p~~~v~~~p~~~~~l~~~-~~---------------~i~~l~~ge~~~l~~~~~~~~~I~~~Pa~h~g~~ 213 (240)
+. ...++. +-+++..+...+.|++. |. +...+.+-|...+.. -.+++...|-+|-...
T Consensus 131 inSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~---t~l~~~pfpv~Hg~kt 206 (356)
T COG5212 131 INSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL---TRLTGEPFPVSHGKKT 206 (356)
T ss_pred ecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee---eeecceeeeccCCccc
Confidence 32 122222 34577778777777763 21 334555655544410 2466677777774311
Q ss_pred C-CCCcceEEEEEeCCCEEEEc
Q 026296 214 W-QRPENGVLCIMQVSRQFFTR 234 (240)
Q Consensus 214 ~-~~~~~G~vi~~~~~~~~y~~ 234 (240)
. +....-|+|....++.+|..
T Consensus 207 G~p~ySs~~lfr~nkS~~~f~~ 228 (356)
T COG5212 207 GSPSYSSMLLFRSNKSNEFFAY 228 (356)
T ss_pred CCcccceEEEEecCCCcceEEE
Confidence 1 11124577766656666644
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=59.73 E-value=3.8 Score=36.34 Aligned_cols=57 Identities=5% Similarity=-0.224 Sum_probs=41.4
Q ss_pred eCCcEEEEcCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCCCCCCChhhH
Q 026296 93 LDGVKVLVDPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSLDDHCHLKTL 152 (240)
Q Consensus 93 ~~g~~ILiDP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H~DHld~~tl 152 (240)
..+-..+.||.|+.+ + |.++.++.++ +-.+.+++.++.++.++++|+|+||.+..++
T Consensus 101 ~tdpvf~d~~if~s~-g-Pkry~~pp~~-~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~ 157 (343)
T KOG3798|consen 101 VTDPVWADRASFTSF-G-PKRYRPPPMK-LEDLPDLDFAVVSHDHYDHLDADAVKKITDR 157 (343)
T ss_pred ecchhhccchhhccc-C-cccccCCchh-hccCCCCceeccccccccccchHHHHhhhcc
Confidence 466788899999865 5 7666543221 1125567888899999999999999986554
No 55
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=52.69 E-value=27 Score=24.03 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.6
Q ss_pred CcEEEEEeCCcEEEE-cCccCCCCcccccccccCCCcccCccCCCCCCCccEEEecCCC-CCCCC
Q 026296 86 GNSWLWDLDGVKVLV-DPILVGNLDFGIPWLFDAGKKFLKSFQLSDLPQVDCLLITQSL-DDHCH 148 (240)
Q Consensus 86 hss~li~~~g~~ILi-DP~~~~~~~~p~~~~~~~~~~~~~~~~~~~lp~iD~VLISH~H-~DHld 148 (240)
|.|++|..+..+.|+ +. +... +.+ +.. .--.+.+++.|++|+.. +|+++
T Consensus 12 ~p~l~l~~d~~rYlFGn~---gEGt---QR~-------~~e-~~ikl~kl~~IFlT~~~~w~~~G 62 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNC---GEGT---QRA-------CNE-HKIKLSKLNDIFLTGLSSWENIG 62 (63)
T ss_pred CCEEEEEeCCceEEeccC---CcHH---HHH-------HHH-cCCCccccceEEECCCCcccccC
Confidence 378899999999999 75 2222 111 111 12345688999999999 88864
No 56
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.47 E-value=20 Score=32.97 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCCccEEEe--cCCCCCCCChhhHHHhhhhCCCCeEEEc
Q 026296 131 LPQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT 167 (240)
Q Consensus 131 lp~iD~VLI--SH~H~DHld~~tl~~l~~~~p~~~v~~~ 167 (240)
.+.+|+|+| +|.|.++. .+.++.+++.+|++.+++-
T Consensus 120 ~~g~D~iviD~AhGhs~~~-i~~ik~ik~~~P~~~vIaG 157 (346)
T PRK05096 120 SPALNFICIDVANGYSEHF-VQFVAKAREAWPDKTICAG 157 (346)
T ss_pred CCCCCEEEEECCCCcHHHH-HHHHHHHHHhCCCCcEEEe
Confidence 356888886 89999987 4689999999999887764
No 57
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=39.02 E-value=18 Score=33.50 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.8
Q ss_pred CccEEEe--cCCCCCCCChhhHHHhhhhCCCCeEEEcc
Q 026296 133 QVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIATP 168 (240)
Q Consensus 133 ~iD~VLI--SH~H~DHld~~tl~~l~~~~p~~~v~~~p 168 (240)
.+|+|+| +|.|..|.- +.++.+++.+|++++++-.
T Consensus 120 gvD~ivID~a~g~s~~~~-~~ik~ik~~~~~~~viaGN 156 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVI-DMIKKIKKKFPDVPVIAGN 156 (352)
T ss_dssp T-SEEEEE-SSTTSHHHH-HHHHHHHHHSTTSEEEEEE
T ss_pred CCCEEEccccCccHHHHH-HHHHHHHHhCCCceEEecc
Confidence 6799888 899999984 6899999999999987643
No 58
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=33.78 E-value=35 Score=31.43 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCCccEEEe--cCCCCCCCChhhHHHhhhhCCCCeEEEc
Q 026296 131 LPQVDCLLI--TQSLDDHCHLKTLKPLSKMSPNLKVIAT 167 (240)
Q Consensus 131 lp~iD~VLI--SH~H~DHld~~tl~~l~~~~p~~~v~~~ 167 (240)
-+.+|+|+| +|.|.++. .+.++.+++.+|+..++.-
T Consensus 119 ~~~~d~iviD~AhGhs~~~-i~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 119 VPQLKFICLDVANGYSEHF-VEFVKLVREAFPEHTIMAG 156 (343)
T ss_pred CCCCCEEEEECCCCcHHHH-HHHHHHHHhhCCCCeEEEe
Confidence 346788886 89999987 4689999999988776654
No 59
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=27.86 E-value=1e+02 Score=28.69 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=19.0
Q ss_pred CccEEEecCCCCCCCChhhHHH
Q 026296 133 QVDCLLITQSLDDHCHLKTLKP 154 (240)
Q Consensus 133 ~iD~VLISH~H~DHld~~tl~~ 154 (240)
.||.|++|+-|.+....+.|++
T Consensus 184 ~idtIvvStQH~~~i~~~~l~~ 205 (388)
T COG0192 184 RIDTIVVSTQHDPDISQEQLRE 205 (388)
T ss_pred eEEEEEEEeccCcccCHHHHHH
Confidence 7999999999999998666654
No 60
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.23 E-value=83 Score=22.91 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCCCCccEEEecCCCCCCCChhhHHHhhhhCCCCeEEEcc-ChHHHH
Q 026296 129 SDLPQVDCLLITQSLDDHCHLKTLKPLSKMSPNLKVIATP-NAKTLL 174 (240)
Q Consensus 129 ~~lp~iD~VLISH~H~DHld~~tl~~l~~~~p~~~v~~~p-~~~~~l 174 (240)
..+.+.|+|++-=+.-.|-....+++..+++ +.|++++. .++..|
T Consensus 44 ~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 44 SKIKKADLVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSRSRGVSSL 89 (97)
T ss_pred HhcCCCCEEEEEeCCcChHHHHHHHHHHHHc-CCcEEEECCCCHHHH
Confidence 3455779999988888887777788888775 67877766 555533
Done!