Query 026297
Match_columns 240
No_of_seqs 198 out of 423
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:13:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 7.6E-57 2.6E-61 383.1 17.2 150 11-160 1-167 (175)
2 3qrl_A Transcription initiatio 100.0 5.8E-38 2E-42 258.6 14.3 126 15-156 9-139 (140)
3 2l5g_B Putative uncharacterize 85.1 2.3 7.8E-05 28.0 5.4 32 200-231 8-39 (42)
4 2l5g_B Putative uncharacterize 75.4 4.3 0.00015 26.7 4.2 32 205-236 6-37 (42)
5 3trt_A Vimentin; cytoskeleton, 67.6 7.4 0.00025 27.5 4.5 34 203-236 44-77 (77)
6 1gmj_A ATPase inhibitor; coile 67.0 9.5 0.00033 28.5 5.0 36 200-235 36-71 (84)
7 1fxk_A Prefoldin; archaeal pro 65.3 9.6 0.00033 28.1 4.9 46 190-235 54-99 (107)
8 2zqm_A Prefoldin beta subunit 64.3 9 0.00031 28.6 4.6 46 190-235 59-104 (117)
9 2wuj_A Septum site-determining 62.5 7.9 0.00027 26.4 3.6 31 201-231 27-57 (57)
10 1nkp_B MAX protein, MYC proto- 62.3 14 0.00048 26.5 5.2 37 200-236 46-82 (83)
11 3efg_A Protein SLYX homolog; x 60.3 15 0.00051 26.7 5.0 38 200-237 27-64 (78)
12 1ci6_A Transcription factor AT 56.9 20 0.0007 24.8 5.0 36 200-235 22-57 (63)
13 4dzn_A Coiled-coil peptide CC- 55.3 14 0.00047 22.5 3.3 24 213-236 7-30 (33)
14 2v4h_A NF-kappa-B essential mo 54.6 14 0.00046 29.0 4.1 28 208-235 83-110 (110)
15 2yy0_A C-MYC-binding protein; 54.4 9.5 0.00032 25.9 2.8 33 201-233 19-51 (53)
16 1gd2_E Transcription factor PA 53.8 18 0.0006 26.0 4.3 35 201-235 36-70 (70)
17 2yy0_A C-MYC-binding protein; 53.2 31 0.0011 23.3 5.3 27 200-226 25-51 (53)
18 2fxo_A Myosin heavy chain, car 52.2 19 0.00066 28.1 4.8 33 200-232 96-128 (129)
19 3mq7_A Bone marrow stromal ant 51.3 21 0.00072 28.3 4.7 27 210-236 73-99 (121)
20 3m9b_A Proteasome-associated A 51.0 13 0.00044 33.0 3.8 39 200-238 60-98 (251)
21 3nmd_A CGMP dependent protein 49.8 27 0.00091 25.3 4.7 23 213-235 38-60 (72)
22 3a2a_A Voltage-gated hydrogen 49.6 30 0.001 24.0 4.7 34 201-234 11-44 (58)
23 1hwt_C Protein (heme activator 48.9 10 0.00035 26.4 2.4 25 214-238 57-81 (81)
24 1nkp_A C-MYC, MYC proto-oncoge 47.1 40 0.0014 24.7 5.5 38 200-237 51-88 (88)
25 1nlw_A MAD protein, MAX dimeri 46.8 37 0.0013 24.5 5.3 35 200-234 46-80 (80)
26 2jo8_A Serine/threonine-protei 46.3 47 0.0016 22.5 5.3 38 194-231 6-44 (51)
27 3rcz_B SUMO-conjugating enzyme 44.2 52 0.0018 26.5 6.3 48 23-70 29-76 (163)
28 2gjd_A Ubiquitin-conjugating e 43.4 55 0.0019 26.0 6.3 35 36-70 36-70 (157)
29 1jnm_A Proto-oncogene C-JUN; B 41.7 61 0.0021 22.0 5.5 36 201-236 22-57 (62)
30 2wg5_A General control protein 40.9 23 0.00079 27.0 3.5 26 204-229 10-35 (109)
31 3m91_A Proteasome-associated A 39.9 66 0.0023 21.6 5.2 35 200-234 15-49 (51)
32 2lw1_A ABC transporter ATP-bin 39.2 36 0.0012 24.7 4.2 31 196-226 17-47 (89)
33 3vmx_A Voltage-gated hydrogen 39.0 66 0.0023 21.5 5.0 35 201-235 4-38 (48)
34 2wt7_A Proto-oncogene protein 39.0 58 0.002 22.3 5.0 29 206-234 28-56 (63)
35 2grr_A Ubiquitin-conjugating e 38.1 76 0.0026 25.3 6.4 36 35-70 38-73 (161)
36 3ra3_B P2F; coiled coil domain 37.6 34 0.0012 20.1 3.0 24 205-228 4-27 (28)
37 1a93_B MAX protein, coiled coi 36.4 46 0.0016 20.8 3.7 23 212-234 11-33 (34)
38 1wt6_A Myotonin-protein kinase 36.2 63 0.0022 23.9 5.0 33 200-232 30-62 (81)
39 4gpr_A Ubiquitin-conjugating e 36.0 44 0.0015 26.4 4.6 34 36-69 31-64 (151)
40 3hnw_A Uncharacterized protein 35.9 57 0.002 25.9 5.2 13 216-228 111-123 (138)
41 2h2y_A Ubiquitin-conjugating e 35.8 47 0.0016 25.8 4.7 35 36-70 47-81 (136)
42 1t2k_D Cyclic-AMP-dependent tr 34.9 74 0.0025 21.4 5.0 27 203-229 31-57 (61)
43 1am9_A Srebp-1A, protein (ster 34.8 81 0.0028 22.6 5.5 42 198-239 40-81 (82)
44 1go4_E MAD1 (mitotic arrest de 34.7 28 0.00095 26.7 3.0 36 194-229 61-96 (100)
45 2q2f_A Selenoprotein S; anti-p 34.2 47 0.0016 24.9 4.0 36 200-235 43-78 (89)
46 1go4_E MAD1 (mitotic arrest de 34.1 1E+02 0.0034 23.5 6.1 33 201-233 12-44 (100)
47 3m91_A Proteasome-associated A 33.5 58 0.002 21.9 4.1 24 204-227 26-49 (51)
48 3nmd_A CGMP dependent protein 33.4 89 0.0031 22.5 5.4 37 200-236 32-68 (72)
49 2r0j_A Ubiquitin carrier prote 32.9 62 0.0021 25.4 5.0 35 36-70 28-62 (149)
50 1i7k_A Ubiquitin-conjugating e 32.8 52 0.0018 27.0 4.6 42 36-77 57-100 (179)
51 3viq_B Mating-type switching p 32.6 33 0.0011 25.6 3.0 19 203-221 10-28 (85)
52 3ra3_A P1C; coiled coil domain 32.5 29 0.00098 20.4 2.1 18 210-227 9-26 (28)
53 1t2k_D Cyclic-AMP-dependent tr 32.3 97 0.0033 20.8 5.3 36 200-235 21-56 (61)
54 2wt7_A Proto-oncogene protein 31.8 1E+02 0.0035 21.0 5.3 33 200-232 29-61 (63)
55 3iv1_A Tumor susceptibility ge 31.5 84 0.0029 23.0 5.0 30 205-234 36-65 (78)
56 1l8d_A DNA double-strand break 31.0 60 0.002 24.0 4.4 30 203-232 66-95 (112)
57 3h8k_A Ubiquitin-conjugating e 31.0 92 0.0031 24.7 5.8 35 36-70 31-65 (164)
58 3iv1_A Tumor susceptibility ge 30.6 63 0.0022 23.6 4.2 31 201-231 46-76 (78)
59 2onu_A Ubiquitin-conjugating e 30.3 1E+02 0.0035 24.3 5.9 35 36-70 26-60 (152)
60 1fxk_C Protein (prefoldin); ar 30.3 84 0.0029 23.9 5.2 34 201-234 95-128 (133)
61 2zqm_A Prefoldin beta subunit 29.9 90 0.0031 22.9 5.2 35 200-234 76-110 (117)
62 2aze_B Transcription factor E2 29.9 76 0.0026 24.1 4.8 31 200-230 12-42 (106)
63 2aak_A UBC1, ubiquitin conjuga 29.7 1.1E+02 0.0037 24.0 5.9 35 36-70 31-65 (152)
64 2ayv_A Ubiquitin-conjugating e 29.6 68 0.0023 25.9 4.8 35 36-70 48-82 (166)
65 1joc_A EEA1, early endosomal a 28.9 70 0.0024 24.7 4.5 28 202-229 5-32 (125)
66 2l5g_A GPS2 protein, G protein 28.7 61 0.0021 20.7 3.3 22 212-233 12-33 (38)
67 1zdn_A Ubiquitin-conjugating e 28.6 1.1E+02 0.0036 24.3 5.7 35 36-70 40-74 (158)
68 3kin_B Kinesin heavy chain; mo 28.3 76 0.0026 24.4 4.6 26 210-235 91-116 (117)
69 1hjb_A Ccaat/enhancer binding 27.0 80 0.0027 23.4 4.3 29 203-231 45-73 (87)
70 1fxk_A Prefoldin; archaeal pro 26.8 1.2E+02 0.0041 21.9 5.4 34 200-233 71-104 (107)
71 1hjb_A Ccaat/enhancer binding 26.5 1.2E+02 0.0042 22.4 5.3 30 206-235 41-70 (87)
72 2fo3_A Ubiquitin-conjugating e 26.3 1.4E+02 0.0047 22.7 5.8 34 36-69 33-66 (125)
73 3jsv_C NF-kappa-B essential mo 26.1 55 0.0019 24.8 3.3 36 203-238 56-91 (94)
74 3rz3_A Ubiquitin-conjugating e 26.0 1.2E+02 0.0041 24.6 5.8 36 35-70 34-69 (183)
75 3lay_A Zinc resistance-associa 26.0 1.2E+02 0.0039 25.1 5.6 34 203-236 73-106 (175)
76 3hnw_A Uncharacterized protein 25.9 1.1E+02 0.0039 24.1 5.4 28 201-228 75-102 (138)
77 2cly_B ATP synthase D chain, m 25.7 67 0.0023 26.1 4.1 30 200-229 94-123 (160)
78 1zym_A Enzyme I; phosphotransf 25.6 76 0.0026 27.5 4.6 28 199-226 36-63 (258)
79 1jnm_A Proto-oncogene C-JUN; B 25.5 78 0.0027 21.4 3.8 32 200-231 28-59 (62)
80 1jat_A Ubiquitin-conjugating e 25.4 1.4E+02 0.0049 23.4 5.9 35 36-70 32-66 (155)
81 2ucz_A UBC7, ubiquitin conjuga 25.2 91 0.0031 24.8 4.7 42 36-77 32-75 (165)
82 3l4q_C Phosphatidylinositol 3- 25.1 74 0.0025 26.4 4.2 38 200-237 102-139 (170)
83 2a7l_A Hypothetical ubiquitin- 25.1 2E+02 0.0069 22.3 6.7 35 35-69 50-84 (136)
84 2xnx_M M protein, M1-BC1; cell 24.9 80 0.0027 25.7 4.3 36 200-235 72-107 (146)
85 3q8t_A Beclin-1; autophagy, AT 24.2 1.3E+02 0.0043 22.4 5.0 31 200-230 24-54 (96)
86 1avy_A Fibritin, gpwac M; bact 23.9 1.2E+02 0.004 22.0 4.5 33 203-235 10-42 (74)
87 1t6f_A Geminin; coiled-coil, c 23.8 55 0.0019 20.7 2.4 24 203-226 9-32 (37)
88 2jee_A YIIU; FTSZ, septum, coi 23.7 1.4E+02 0.0047 22.0 5.0 11 216-226 28-38 (81)
89 4b4t_K 26S protease regulatory 23.6 1.1E+02 0.0039 28.4 5.7 39 200-238 55-93 (428)
90 2wg5_A General control protein 23.3 88 0.003 23.6 4.1 29 210-238 9-37 (109)
91 1t3j_A Mitofusin 1; coiled coi 23.3 1E+02 0.0035 23.4 4.3 27 207-233 46-72 (96)
92 3rq9_A TSI2, type VI secretion 23.2 44 0.0015 24.6 2.2 24 205-228 7-30 (85)
93 1fxt_A Ubiquitin-conjugating e 23.2 1.7E+02 0.0057 22.8 5.9 33 37-69 30-62 (149)
94 1z2u_A Ubiquitin-conjugating e 22.8 1.7E+02 0.0059 22.7 5.9 34 36-69 31-64 (150)
95 2bep_A Ubiquitin-conjugating e 22.7 1.7E+02 0.0059 23.0 5.9 35 36-70 38-72 (159)
96 1ayz_A UBC2, ubiquitin-conjuga 22.7 1.7E+02 0.0057 23.6 5.9 34 36-69 31-64 (169)
97 1nkp_B MAX protein, MYC proto- 22.7 1.8E+02 0.0061 20.5 5.5 38 198-235 37-74 (83)
98 2akf_A Coronin-1A; coiled coil 22.5 1.4E+02 0.0047 18.1 4.5 22 201-222 6-27 (32)
99 3r4h_A Coiled coil helix CC-TE 22.5 95 0.0033 18.9 3.2 27 212-238 6-32 (34)
100 1l8d_A DNA double-strand break 22.4 1.6E+02 0.0053 21.6 5.3 34 200-233 70-103 (112)
101 2eqb_B RAB guanine nucleotide 22.3 1.6E+02 0.0053 22.4 5.2 26 200-225 11-36 (97)
102 1wlq_A Geminin; coiled-coil; 2 22.3 1.7E+02 0.0058 21.6 5.2 9 191-199 19-27 (83)
103 3gpv_A Transcriptional regulat 22.3 1.5E+02 0.005 23.2 5.4 33 203-235 97-129 (148)
104 2e2c_A Ubiquitin conjugating e 22.2 1.6E+02 0.0053 23.2 5.5 35 36-70 36-70 (156)
105 1gu4_A CAAT/enhancer binding p 22.0 1.2E+02 0.004 22.0 4.3 27 209-235 44-70 (78)
106 3he5_B Synzip2; heterodimeric 22.0 1.5E+02 0.005 19.6 4.3 27 205-231 21-47 (52)
107 1yf2_A Type I restriction-modi 21.8 1.1E+02 0.0039 26.3 5.0 30 201-230 169-198 (425)
108 2xdj_A Uncharacterized protein 21.7 1.3E+02 0.0043 22.0 4.5 24 212-235 31-54 (83)
109 1uii_A Geminin; human, DNA rep 21.6 1.2E+02 0.0041 22.4 4.3 26 209-234 40-65 (83)
110 1gmj_A ATPase inhibitor; coile 21.5 1.2E+02 0.0042 22.4 4.4 43 193-235 32-78 (84)
111 3mov_A Lamin-B1; LMNB1, B-type 21.5 1.2E+02 0.004 22.7 4.3 27 207-233 29-55 (95)
112 1ic2_A Tropomyosin alpha chain 21.3 1.8E+02 0.0061 20.6 5.2 31 203-233 29-59 (81)
113 2y9m_A Ubiquitin-conjugating e 20.5 1.9E+02 0.0065 23.2 5.9 36 35-70 44-79 (172)
114 1yf2_A Type I restriction-modi 20.4 1.3E+02 0.0043 26.0 5.0 32 200-231 378-409 (425)
115 3rvy_A ION transport protein; 20.4 19 0.00067 30.7 -0.3 23 211-233 259-281 (285)
116 1ci6_A Transcription factor AT 20.0 2.1E+02 0.0073 19.4 5.4 33 200-232 29-61 (63)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=7.6e-57 Score=383.11 Aligned_cols=150 Identities=43% Similarity=0.839 Sum_probs=134.3
Q ss_pred eeceEEEEeEEEccceEEcCC----CCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEeee
Q 026297 11 LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG 86 (240)
Q Consensus 11 ~k~~~i~~pivyGn~a~~l~k----~~~~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~nP~Rvv~~PPFevtE~G 86 (240)
|||++|+|||||||+|++|++ ++++++||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus 1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G 80 (175)
T 3rls_A 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG 80 (175)
T ss_dssp CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence 699999999999999999986 3567899999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEEEEEeeCCCCCCEEEEEEeecCCCCCCC-------C------CcCCCCeEEEeeeEEEeeCCCHHHHHHHhc
Q 026297 87 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG-------S------MSTKKPVVVESYDEIVFPEPSDSFLARVQN 153 (240)
Q Consensus 87 WGeF~I~I~I~F~~~~~ekp~~i~H~L~l~~~~~~~-------~------~~~~~~v~~e~ydeivF~~Pse~f~~~L~~ 153 (240)
||||+|.|+|||++++++|+++|+|+|+||+++.+. . ..+++||++|+||||||+||+|+||++|++
T Consensus 81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~ 160 (175)
T 3rls_A 81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS 160 (175)
T ss_dssp SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence 999999999999988899999999999999986441 1 124789999999999999999999999999
Q ss_pred CCCccCC
Q 026297 154 HPAVTLP 160 (240)
Q Consensus 154 ~~~~~~~ 160 (240)
+|+.++|
T Consensus 161 ~p~~~lp 167 (175)
T 3rls_A 161 RPGNLLP 167 (175)
T ss_dssp STTCCSC
T ss_pred CCCccCC
Confidence 9987664
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=5.8e-38 Score=258.57 Aligned_cols=126 Identities=20% Similarity=0.481 Sum_probs=107.5
Q ss_pred EEEEeEEEccceEEcCCCC--CCCCeeeEE--EEEeCCCCCCcc-cceeeeEEEeCCCCCCCcceeecCCcEEEeeeEEe
Q 026297 15 EISIPIVYGNVAFWLGKKA--SEYQSHKWT--VYVRGATNEDLG-VVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGE 89 (240)
Q Consensus 15 ~i~~pivyGn~a~~l~k~~--~~~~tH~Wt--VyVr~~~~edls-~~IkkV~F~LH~sf~nP~Rvv~~PPFevtE~GWGe 89 (240)
.....|+.+.. .+++.. .+.++|+|+ |||||.+++|++ +||+||+|+|||||+||+|+|++|||+|+|+||||
T Consensus 9 krtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGe 86 (140)
T 3qrl_A 9 KRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGG 86 (140)
T ss_dssp EEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSC
T ss_pred EEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeee
Confidence 33444444443 565543 345789999 999999999985 89999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeCCCCCCEEEEEEeecCCCCCCCCCcCCCCeEEEeeeEEEeeCCCHHHHHHHhcCCC
Q 026297 90 FEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPA 156 (240)
Q Consensus 90 F~I~I~I~F~~~~~ekp~~i~H~L~l~~~~~~~~~~~~~~v~~e~ydeivF~~Pse~f~~~L~~~~~ 156 (240)
|+|.|+|||++++ ++++|.|+|+|+++. ++.+++|+|+||+++|+++|+.+|+
T Consensus 87 F~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 87 FPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp CCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred EEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence 9999999999764 578999999999753 5678899999999999999998875
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=85.14 E-value=2.3 Score=28.01 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
-.-++|++.-..++.+.|.+|+.+++.+|...
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45577888888888888888888888888654
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=75.39 E-value=4.3 Score=26.68 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 205 QLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 205 ~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
-|.....+|+.||++.++++.++...+.+|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999988877753
No 5
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.62 E-value=7.4 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
..+=..+....+.||.+|+.++..|+.+++.+|.
T Consensus 44 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 44 ANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333445556788999999999999999988873
No 6
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=67.02 E-value=9.5 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+.|.++|.+-++++..+|+..+++|+.+|.++...|
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888889988888888888776554
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=65.28 E-value=9.6 Score=28.09 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=36.4
Q ss_pred cchhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 190 LAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 190 ~~~~f~~~~e~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+|..|-..+-.+-...|......+..+|+.|.+++..++.+++.+|
T Consensus 54 iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 54 SGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp ETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777788888888888888888888888888877765
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.28 E-value=9 Score=28.64 Aligned_cols=46 Identities=11% Similarity=0.261 Sum_probs=29.6
Q ss_pred cchhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 190 LAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 190 ~~~~f~~~~e~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+|..|-..+-.+-+..|......+..+|+.|.+++..++.+++.+|
T Consensus 59 iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 59 VGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp ETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666777777777777777666666666655544
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.47 E-value=7.9 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
+-|+++......+.++++.|++++..+++++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468888888888888888888888877653
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=62.35 E-value=14 Score=26.53 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
.+-|..|....+....+++.|+++...++.+++.|..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445666666777778888888888888888887754
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.33 E-value=15 Score=26.73 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRST 237 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~ 237 (240)
.+.++.|..+..+=+.+|++|+.++..+.++++.+.++
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56788899999999999999999999999888777654
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.87 E-value=20 Score=24.76 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.++.+.|..-.+.+..+...|+.++..++.+.+.||
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777778888888888888888877776
No 13
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=55.31 E-value=14 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccc
Q 026297 213 VQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 213 V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
+.+||+.||+++..+.=+++.||.
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666666666666666655553
No 14
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.55 E-value=14 Score=28.98 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 208 AARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 208 ~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+||.+...+++.|..+|..+..++++||
T Consensus 83 adREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 83 HAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 5677888888888888888888877765
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.44 E-value=9.5 Score=25.88 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
.+++.|..=....++.++.|++++.++..++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677777777777777777777777766654
No 16
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.85 E-value=18 Score=25.95 Aligned_cols=35 Identities=9% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
..+..|......+..++..|+.++..+..+++.+|
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556666666778888888888888888887765
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.22 E-value=31 Score=23.28 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISL 226 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~ 226 (240)
+.|.+.|.+-...+.+++++|+.+|..
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777777777777754
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.21 E-value=19 Score=28.08 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 232 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 232 (240)
.+....|.+++.++..++..|+++|..+|..++
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~ 128 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455677888888888888888888888877665
No 19
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.28 E-value=21 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 210 RQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 210 ~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
.++.+.||..|+++|..++.++++|++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677788888888888777777654
No 20
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.96 E-value=13 Score=32.98 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
+.+++.|.+=..++.+++..+++++..+.+++++|++.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666666666688888888888888888888888765
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.80 E-value=27 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 026297 213 VQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 213 V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
-++.|+.|..+|..++.+++.|+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666554
No 22
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=49.64 E-value=30 Score=24.00 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
..+.||+....++...|+.|+.+..+.|+++..|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999988765
No 23
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=48.87 E-value=10 Score=26.44 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 214 QAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 214 ~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
..+++.|.+++..||..++.|.+++
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~~~ 81 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHSSP 81 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999987653
No 24
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=47.05 E-value=40 Score=24.72 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRST 237 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~ 237 (240)
.+-|..|..-.+....+++.|+.+-..|..++++|+.+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~~ 88 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45567777777777888888888888888888888753
No 25
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=46.84 E-value=37 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
.+-|..|.....+...+++.|+.+...+..++++|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45567777777888888888888888888887764
No 26
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=46.31 E-value=47 Score=22.50 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=29.5
Q ss_pred hcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 194 FMNFSEADEL-LQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 194 f~~~~e~~el-~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
|.++...+|| .+|...-.....||++++.++..+.+-+
T Consensus 6 fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPI 44 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPI 44 (51)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhH
Confidence 4455555666 6788888889999999999999887654
No 27
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=44.18 E-value=52 Score=26.47 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=31.1
Q ss_pred ccceEEcCCCCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 23 GNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 23 Gn~a~~l~k~~~~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
|-.+.+.....+..+...|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 29 gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~ 76 (163)
T 3rcz_B 29 GFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPT 76 (163)
T ss_dssp TCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCC
Confidence 444444332222237899999999987765554555677778888863
No 28
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=43.36 E-value=55 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=25.1
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
.+...|.+-+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 70 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPS 70 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCC
Confidence 47899999999987654433345577777788763
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=41.67 E-value=61 Score=22.00 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
+.++.|..--..+..+.+.|+.++..+..+...||.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666777777766666653
No 30
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.94 E-value=23 Score=26.96 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026297 204 LQLAAARQQVQAHIAKLKRQISLIDG 229 (240)
Q Consensus 204 ~~l~~a~~~V~~~i~~lk~~l~~~e~ 229 (240)
.+|.+.++..++++.+++++++.+.+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666666666666666666666554
No 31
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=39.87 E-value=66 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
+.++..|.+=..++.+...+-+++|..+.+++.+|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665556666666666666666666666554
No 32
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.24 E-value=36 Score=24.73 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 196 NFSEADELLQLAAARQQVQAHIAKLKRQISL 226 (240)
Q Consensus 196 ~~~e~~el~~l~~a~~~V~~~i~~lk~~l~~ 226 (240)
.|.++.|++.|..-+.++.++|+.|..+|..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999988888888888888877753
No 33
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=38.98 E-value=66 Score=21.54 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.-+.+|......+...|..|..+..++|+++..|+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 45778888888888889999888888888876664
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.98 E-value=58 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 206 LAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 206 l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
|..--..+..+.+.|+.++..+..+.+.|
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 35
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=38.07 E-value=76 Score=25.26 Aligned_cols=36 Identities=6% Similarity=0.163 Sum_probs=25.0
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 35 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 35 ~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
++....|.+.+.|+.+.....=+=++...+.+.|+.
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 73 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPS 73 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCC
Confidence 457899999999987654433344667777788763
No 36
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=37.59 E-value=34 Score=20.09 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 205 QLAAARQQVQAHIAKLKRQISLID 228 (240)
Q Consensus 205 ~l~~a~~~V~~~i~~lk~~l~~~e 228 (240)
||..-...+.+||+.|.-++..+|
T Consensus 4 rlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhc
Confidence 444444455555555544444443
No 37
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.43 E-value=46 Score=20.81 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 026297 212 QVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 212 ~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
.-+++|++||+|-..||.++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34678889999888888887554
No 38
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.22 E-value=63 Score=23.88 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 232 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 232 (240)
++||.++..+....+.++.+...+...++.+++
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555554444444444444433
No 39
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=35.98 E-value=44 Score=26.37 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.6
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998776554455567777788876
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.90 E-value=57 Score=25.92 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 026297 216 HIAKLKRQISLID 228 (240)
Q Consensus 216 ~i~~lk~~l~~~e 228 (240)
++++|++++..++
T Consensus 111 e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 111 EIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 41
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=35.82 E-value=47 Score=25.83 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=24.1
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~ 81 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPL 81 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCC
Confidence 56888999999987654433344566667777763
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.95 E-value=74 Score=21.42 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDG 229 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~ 229 (240)
.+.|.........+|..|+.++..+.+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 43
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.83 E-value=81 Score=22.58 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q 026297 198 SEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 239 (240)
Q Consensus 198 ~e~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~~~ 239 (240)
+-..-|..-....+.++.+++.|+.+...++..+++.++-+|
T Consensus 40 ~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~~~ 81 (82)
T 1am9_A 40 NKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKSLKD 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345667777778888888888999988888888887665443
No 44
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.67 E-value=28 Score=26.69 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=26.0
Q ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026297 194 FMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDG 229 (240)
Q Consensus 194 f~~~~e~~el~~l~~a~~~V~~~i~~lk~~l~~~e~ 229 (240)
|+.-.-..-.+.......++++|+++||.+++.+|.
T Consensus 61 ~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 61 MSLNPTSVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555566778888889999999998887765
No 45
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=34.22 E-value=47 Score=24.95 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
..-.+.|++||.+.+++....-.+++++..++++.|
T Consensus 43 v~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeK 78 (89)
T 2q2f_A 43 VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEK 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888999888888777666666666665554
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.07 E-value=1e+02 Score=23.53 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
+++..|..-......|..+|+++...+|.++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888999999999999988876
No 47
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.46 E-value=58 Score=21.91 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 204 LQLAAARQQVQAHIAKLKRQISLI 227 (240)
Q Consensus 204 ~~l~~a~~~V~~~i~~lk~~l~~~ 227 (240)
.+|.++-+.-.++|.+|++++..+
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666777777666654
No 48
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.40 E-value=89 Score=22.53 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
.+||...++-....+++|......+..|..++-++++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555556666667777777777777777766665
No 49
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=32.88 E-value=62 Score=25.39 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=25.0
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+..-..=+=++.+.+.+.|+.
T Consensus 28 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 62 (149)
T 2r0j_A 28 ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPM 62 (149)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCC
Confidence 47899999999987655443455667777788763
No 50
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=32.80 E-value=52 Score=27.03 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC--Ccceeec
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN--PTRAVES 77 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n--P~Rvv~~ 77 (240)
+....|.+-+.|+.+.....=+=++.+.+.+.|+. |...+..
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T 100 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT 100 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEec
Confidence 47889999999987654443455666777787763 4444433
No 51
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.56 E-value=33 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026297 203 LLQLAAARQQVQAHIAKLK 221 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk 221 (240)
+..|.+-+.++.++|+.++
T Consensus 10 i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444443333
No 52
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.46 E-value=29 Score=20.41 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026297 210 RQQVQAHIAKLKRQISLI 227 (240)
Q Consensus 210 ~~~V~~~i~~lk~~l~~~ 227 (240)
...+.+.|+.||+++..+
T Consensus 9 ndaleqkiaalkqkiasl 26 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 334445555555555443
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.26 E-value=97 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.+.++.|..--.....+...|+.++..+..++..||
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777888888888888888887776
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.77 E-value=1e+02 Score=20.97 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 232 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 232 (240)
+++.+.|..-...+..+|+.|++++..+...+.
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777788888888888888887776653
No 55
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.53 E-value=84 Score=22.99 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 205 QLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 205 ~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
-|..+.++++.+|.+|+++-..++..++.|
T Consensus 36 EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 36 DLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776666666555444
No 56
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.00 E-value=60 Score=23.97 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQ 232 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 232 (240)
++.+..-...+..++..+++++..++.+++
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~ 95 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELR 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 57
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=30.99 E-value=92 Score=24.70 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 31 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (164)
T 3h8k_A 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65 (164)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCC
Confidence 36789999999987765554556677888888863
No 58
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.59 E-value=63 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
+-+.+|+.=+..|+..|+.|+++.++++..+
T Consensus 46 ~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 46 EMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667777777777777777776654
No 59
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=30.28 E-value=1e+02 Score=24.29 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 60 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPF 60 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCCC
Confidence 57899999999987655443445666667777763
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.28 E-value=84 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
+-++.|.....++.+.++.+++++..++..++++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788888888888888888877664
No 61
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.92 E-value=90 Score=22.93 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
.+.++.|....+.+.+.++.+.+++..++..++++
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777777666543
No 62
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.87 E-value=76 Score=24.14 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 230 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~ 230 (240)
+.|+..|.+..+.+++.|..++++|+.+-..
T Consensus 12 k~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 12 TQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999887643
No 63
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=29.68 E-value=1.1e+02 Score=23.99 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 65 (152)
T 2aak_A 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN 65 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCC
Confidence 56889999999987654433345667777788763
No 64
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=29.59 E-value=68 Score=25.87 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=24.6
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+.....=+=++.+.+-+.|+.
T Consensus 48 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 82 (166)
T 2ayv_A 48 DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82 (166)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCC
Confidence 46788999999987655444455666777777763
No 65
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.89 E-value=70 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026297 202 ELLQLAAARQQVQAHIAKLKRQISLIDG 229 (240)
Q Consensus 202 el~~l~~a~~~V~~~i~~lk~~l~~~e~ 229 (240)
|...|-++-.+.++|++.|+.++.++..
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~ 32 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQR 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444455555555444443
No 66
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.73 E-value=61 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 026297 212 QVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 212 ~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
.++++|.+++.+|..+..+--+
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777665433
No 67
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=28.57 E-value=1.1e+02 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+.....=+=++.+.+.+.|+.
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 74 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 46889999999987654433344566667777763
No 68
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.31 E-value=76 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 210 RQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 210 ~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.++-.++++.|++++..+|.++.+.|
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677888888888888887665
No 69
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.05 E-value=80 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
...|..-...+..+|+.|+.++..+...+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 70
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.82 E-value=1.2e+02 Score=21.88 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
.+.++.|......+.+.++.++.++..++..+++
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777776654
No 71
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.52 E-value=1.2e+02 Score=22.35 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 206 LAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 206 l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+...-..+.++.+.|+.++..|+.+++.||
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667788888888888888888776
No 72
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=26.31 E-value=1.4e+02 Score=22.68 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=22.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
+....|.+-+.|+.+..-..=+=++.+.+-+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 5688899999998765443334455666667765
No 73
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=26.09 E-value=55 Score=24.82 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
+.+=-+||.+...+++.|..+|..+..++.+|+..+
T Consensus 56 F~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 56 FQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444457888889999999999999998888888653
No 74
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=26.03 E-value=1.2e+02 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.3
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 35 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 35 ~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+++...|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 69 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCC
Confidence 357889999999987665544455677777888863
No 75
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.97 E-value=1.2e+02 Score=25.15 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRS 236 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~ 236 (240)
..+|.+-+++-+.++..+++++..+..+++.|-.
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666677788888888888888776643
No 76
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.91 E-value=1.1e+02 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLID 228 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e 228 (240)
++.+.|..-......+|..||.+|..+.
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555554444
No 77
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=25.71 E-value=67 Score=26.15 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDG 229 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~ 229 (240)
.+-+..+.+..+.++++|++|+++|..++.
T Consensus 94 ~~~~~~a~~~~~~s~~ri~~lekeL~~i~~ 123 (160)
T 2cly_B 94 KEDVKSCAEFLTQSKTRIQEYEKELEKMRN 123 (160)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444566667777778888888777777654
No 78
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=25.61 E-value=76 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 199 EADELLQLAAARQQVQAHIAKLKRQISL 226 (240)
Q Consensus 199 e~~el~~l~~a~~~V~~~i~~lk~~l~~ 226 (240)
-..|+.||..|..++.++++.++++...
T Consensus 36 ~~~E~~rl~~Al~~~~~eL~~l~~~~~~ 63 (258)
T 1zym_A 36 VDQEVERFLSGRAKASAQLETIKTKAGE 63 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999998887643
No 79
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.54 E-value=78 Score=21.43 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
.+++..|......+..+|..|+.++..|.+.+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888877766554
No 80
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=25.35 E-value=1.4e+02 Score=23.40 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 66 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPM 66 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCC
Confidence 47889999999987654433345566667777763
No 81
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=25.17 E-value=91 Score=24.78 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC--Ccceeec
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN--PTRAVES 77 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n--P~Rvv~~ 77 (240)
+....|.+.+.|+.+..-..=+=++.+.+-+.|+. |...+..
T Consensus 32 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t 75 (165)
T 2ucz_A 32 NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 75 (165)
T ss_dssp SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC
Confidence 46789999999987654433344566667777763 4444443
No 82
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=25.12 E-value=74 Score=26.44 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRST 237 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~ 237 (240)
..-|+.|..++.++.+.+.........+|+++..|||.
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPe 139 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPD 139 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 55577888899999999999999999999999998874
No 83
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=25.06 E-value=2e+02 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=23.8
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 35 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 35 ~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
++....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 84 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTT
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCC
Confidence 45789999999998765443334455666667775
No 84
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.94 E-value=80 Score=25.75 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
...++...+++..+..++++++.++..++.++++|+
T Consensus 72 ~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 72 TREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777778888888888887777777777766654
No 85
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=24.24 E-value=1.3e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQ 230 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~ 230 (240)
..||..|..-+..|..+|+.++.++..++.+
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 4455666666666666666666666665543
No 86
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.92 E-value=1.2e+02 Score=21.99 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
++.++.....|..++..++..|..+|+..|.|+
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 456666777888999999999999999988887
No 87
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.78 E-value=55 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISL 226 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~ 226 (240)
-++|-.-...-+++|+.||.+-++
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344544455556666666654443
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.74 E-value=1.4e+02 Score=21.96 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026297 216 HIAKLKRQISL 226 (240)
Q Consensus 216 ~i~~lk~~l~~ 226 (240)
+|++||.+-..
T Consensus 28 EieELKekN~~ 38 (81)
T 2jee_A 28 EIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 89
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.56 E-value=1.1e+02 Score=28.35 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
+.+++.|..-+..++.++..+++++..++.+++.++..+
T Consensus 55 e~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~ 93 (428)
T 4b4t_K 55 EKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVP 93 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455666666677888888888888888888887777643
No 90
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.35 E-value=88 Score=23.64 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 210 RQQVQAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 210 ~~~V~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
.+++++++..+++++..++.+++.|+..+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35788899999999999999999988765
No 91
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.31 E-value=1e+02 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 207 AAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 207 ~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
+.+.+....||+.|.+++..+|.....
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666554433
No 92
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=23.22 E-value=44 Score=24.55 Aligned_cols=24 Identities=33% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 205 QLAAARQQVQAHIAKLKRQISLID 228 (240)
Q Consensus 205 ~l~~a~~~V~~~i~~lk~~l~~~e 228 (240)
.|..|++-|.++|.+|+.++...+
T Consensus 7 TLmvAIQcVaAei~~Lda~l~e~~ 30 (85)
T 3rq9_A 7 TLMVAIQCVAARTRELDAQLQNDD 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred eehhhHHHHHHHHHHHHhcccccc
Confidence 578899999999999998876543
No 93
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=23.19 E-value=1.7e+02 Score=22.79 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=23.3
Q ss_pred CeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 37 QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 37 ~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 30 ~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 62 (149)
T 1fxt_A 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62 (149)
T ss_dssp CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTT
T ss_pred CceEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 688999999998765443334456666777776
No 94
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=22.78 E-value=1.7e+02 Score=22.73 Aligned_cols=34 Identities=6% Similarity=0.147 Sum_probs=24.1
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (150)
T 1z2u_A 31 DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64 (150)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998765543334456666777776
No 95
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=22.73 E-value=1.7e+02 Score=23.01 Aligned_cols=35 Identities=3% Similarity=-0.058 Sum_probs=24.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+.+.|+.+.....=+=++.+.+-+.|+.
T Consensus 38 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 72 (159)
T 2bep_A 38 ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPF 72 (159)
T ss_dssp SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCC
Confidence 46889999999987654433344577777777763
No 96
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=22.71 E-value=1.7e+02 Score=23.56 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 69 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~ 69 (240)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP 64 (169)
T 1ayz_A 31 DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64 (169)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccccceEEEECCCCCCcCCCEEEEEEECcccCC
Confidence 4688999999998765443334456666677776
No 97
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.70 E-value=1.8e+02 Score=20.47 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 198 SEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 198 ~e~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
+-.+.|..-.......+.+++.|+.++..+..+.+.|+
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777888888888888888777766554
No 98
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.54 E-value=1.4e+02 Score=18.12 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026297 201 DELLQLAAARQQVQAHIAKLKR 222 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~ 222 (240)
+++.+|.+.-+++++.+..|.+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555555555543
No 99
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.49 E-value=95 Score=18.89 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCC
Q 026297 212 QVQAHIAKLKRQISLIDGQQQQLRSTS 238 (240)
Q Consensus 212 ~V~~~i~~lk~~l~~~e~~~~~~k~~~ 238 (240)
.+.+|++..|++|..+.=+++.+|...
T Consensus 6 aikqelaaikkelaaikfelaaikqga 32 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIKQGA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345666677777777777777766543
No 100
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.42 E-value=1.6e+02 Score=21.60 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
..++..|......+..+++.++.++..++.++..
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777778888887777777776653
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.34 E-value=1.6e+02 Score=22.38 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQIS 225 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~ 225 (240)
.+++.+|..-...+..++.+|+.+|.
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56777777777778888887774443
No 102
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.32 E-value=1.7e+02 Score=21.65 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=3.6
Q ss_pred chhhcCccH
Q 026297 191 AQWFMNFSE 199 (240)
Q Consensus 191 ~~~f~~~~e 199 (240)
.+++..-.|
T Consensus 19 e~YWk~lAE 27 (83)
T 1wlq_A 19 SQYWKEVAE 27 (83)
T ss_dssp CTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444343
No 103
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.27 E-value=1.5e+02 Score=23.18 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
...|..-++.++++|++|++.+..++..++.++
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777788888777777776665443
No 104
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=22.19 E-value=1.6e+02 Score=23.20 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=24.3
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 36 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 36 ~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
+....|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 36 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~ 70 (156)
T 2e2c_A 36 DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70 (156)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCC
Confidence 46788999999987654433344667777777763
No 105
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.05 E-value=1.2e+02 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 209 ARQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 209 a~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.-..+.++...|+.++..|+.++..||
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666655
No 106
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.95 E-value=1.5e+02 Score=19.59 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 205 QLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 205 ~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
+|+.-.+.+.+-|+.|++++..+|.+.
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 344445666777788888887777664
No 107
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.80 E-value=1.1e+02 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026297 201 DELLQLAAARQQVQAHIAKLKRQISLIDGQ 230 (240)
Q Consensus 201 ~el~~l~~a~~~V~~~i~~lk~~l~~~e~~ 230 (240)
+|.++|.+...++++.|+.+++++..+++.
T Consensus 169 ~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~ 198 (425)
T 1yf2_A 169 EEQKQIAKILTKIDEGIEIIEKSINKLERI 198 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666666666555544
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.71 E-value=1.3e+02 Score=22.01 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 212 QVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 212 ~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
..+.||+.||.++..+.-++++++
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 109
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.63 E-value=1.2e+02 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026297 209 ARQQVQAHIAKLKRQISLIDGQQQQL 234 (240)
Q Consensus 209 a~~~V~~~i~~lk~~l~~~e~~~~~~ 234 (240)
|-..+.+|..+|.+++..++.+++.|
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 110
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.51 E-value=1.2e+02 Score=22.42 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=23.8
Q ss_pred hhcCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026297 193 WFMNFSEADELLQLAAA----RQQVQAHIAKLKRQISLIDGQQQQLR 235 (240)
Q Consensus 193 ~f~~~~e~~el~~l~~a----~~~V~~~i~~lk~~l~~~e~~~~~~k 235 (240)
.|-+.-+.+.|.+|..- ...=.++|++|.+++....+.+..||
T Consensus 32 ~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 32 RYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666666666633 34445555555555555555555554
No 111
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.45 E-value=1.2e+02 Score=22.67 Aligned_cols=27 Identities=4% Similarity=0.060 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 207 AAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 207 ~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
.++......+++.+...+..+|.++++
T Consensus 29 ~e~E~~~~~e~~~~q~~i~~lE~eL~~ 55 (95)
T 3mov_A 29 QELEDLLAKEKDNSRRMLTDKEREMAE 55 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333
No 112
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.34 E-value=1.8e+02 Score=20.59 Aligned_cols=31 Identities=6% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026297 203 LLQLAAARQQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 203 l~~l~~a~~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
+........+...+|..|..++..+|.++..
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556677777777777777776643
No 113
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=20.53 E-value=1.9e+02 Score=23.18 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 026297 35 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 70 (240)
Q Consensus 35 ~~~tH~WtVyVr~~~~edls~~IkkV~F~LH~sf~n 70 (240)
++....|.+-+.|+.+.....=+=++.+.+.+.|+.
T Consensus 44 ~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 79 (172)
T 2y9m_A 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPM 79 (172)
T ss_dssp TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCC
Confidence 456888999999987655444455566677777763
No 114
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=20.42 E-value=1.3e+02 Score=25.98 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 231 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~ 231 (240)
.+|.++|......+++.|+.+++++..+++.-
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k 409 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMK 409 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777888888887777766543
No 115
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.41 E-value=19 Score=30.68 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 026297 211 QQVQAHIAKLKRQISLIDGQQQQ 233 (240)
Q Consensus 211 ~~V~~~i~~lk~~l~~~e~~~~~ 233 (240)
+.+.++++++++++.++++++++
T Consensus 259 ~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 259 DNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666667777776666655543
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.04 E-value=2.1e+02 Score=19.39 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026297 200 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQQ 232 (240)
Q Consensus 200 ~~el~~l~~a~~~V~~~i~~lk~~l~~~e~~~~ 232 (240)
..+.+.|..-...+..+|+.|+.++..+.+.+.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666777777777777766655543
Done!