BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026298
MFRITKSKPLEYLSHQFLQKCSASGTPKGKAKMKAGQQLKRSKITTKKGSSPAKGAKAHA
PDEKQRLYDQCLNAPTPVRFLTPKDKKREIEREKLGLISKDRQREIDILKKGGKQAMGIS
DEPMIMGTPGMDLISLGLVDADKIPKYELTAEDGKRLAKECSRVLMRRHRARQAAESTLL
RLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVREATRRSSGNEKMR

High Scoring Gene Products

Symbol, full name Information P value
AT4G05400 protein from Arabidopsis thaliana 5.0e-76
AT4G21140 protein from Arabidopsis thaliana 8.9e-70

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026298
        (240 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2115974 - symbol:AT4G05400 "AT4G05400" species...   766  5.0e-76   1
TAIR|locus:2127418 - symbol:AT4G21140 "AT4G21140" species...   707  8.9e-70   1


>TAIR|locus:2115974 [details] [associations]
            symbol:AT4G05400 "AT4G05400" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
            "protein ubiquitination" evidence=RCA] [GO:0016571 "histone
            methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0005739 "mitochondrion"
            evidence=IDA] GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0005507 EMBL:AL161503 UniGene:At.27619 UniGene:At.33853
            EMBL:BT010418 EMBL:AK175570 IPI:IPI00517262 PIR:H85067
            RefSeq:NP_001031586.1 RefSeq:NP_192449.1 IntAct:Q9M0V5
            STRING:Q9M0V5 PaxDb:Q9M0V5 PRIDE:Q9M0V5 EnsemblPlants:AT4G05400.1
            EnsemblPlants:AT4G05400.2 GeneID:825888 KEGG:ath:AT4G05400
            TAIR:At4g05400 eggNOG:NOG303888 HOGENOM:HOG000237908
            InParanoid:Q9M0V5 OMA:IPKYELT PhylomeDB:Q9M0V5
            ProtClustDB:CLSN2685797 Genevestigator:Q9M0V5 Uniprot:Q9M0V5
        Length = 250

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 151/250 (60%), Positives = 193/250 (77%)

Query:     1 MFRITKSKPL-EYLSHQFLQKCSASGTPKGKAKMKAGQQLKRSKITTXXXXXXXXX---- 55
             M R+TK K + E LS+  +Q+CSASGTPKGKAK+K GQ LKR+K++              
Sbjct:     1 MIRVTKPKAIIESLSYHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKKGGGGGGAPVEG 60

Query:    56 -----XXXXXXDEKQRLYDQCLNAPTPVRFLTPKDKKREIEREKLGLISKDRQREIDILK 110
                        DEKQ+LY+QCLNAP PVR+LTP++ +RE +REKLGLISK++QR+++I K
Sbjct:    61 EEAVKGKGRISDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEKQRDMEIQK 120

Query:   111 KGGKQAMGISDEPMIMGTPGMDLISLGLVDADKIPKYELTAEDGKRLAKECSRVLMRRHR 170
             KGG  +MG++DEPM +GTPG+D ISLG+ +A+++PKY+LT EDG+RLAKE S+VLMR HR
Sbjct:   121 KGGAASMGVTDEPMRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYSKVLMREHR 180

Query:   171 ARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVREAT 230
              R+AAE+ LL LKK AIEALPE+LKKAAL PDLTPFP NR MATLTPPIEGY+EKV +A 
Sbjct:   181 ERRAAETALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGYLEKVMDAA 240

Query:   231 RRSSGNEKMR 240
             ++SS  EK+R
Sbjct:   241 KKSSSKEKLR 250


>TAIR|locus:2127418 [details] [associations]
            symbol:AT4G21140 "AT4G21140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 IPI:IPI00520463 RefSeq:NP_193846.4
            UniGene:At.65011 EnsemblPlants:AT4G21140.1 GeneID:827862
            KEGG:ath:AT4G21140 OMA:MREHRAR ArrayExpress:F4JIM4 Uniprot:F4JIM4
        Length = 243

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 140/243 (57%), Positives = 180/243 (74%)

Query:     1 MFRITKSKPL-EYLSHQFLQKCSASGTPKGKAKMKAGQQLKRSKITTXXXXXXXXXXXXX 59
             M R  + KP+ + +S+  LQKC ASGTPKGK+K+K GQ LKR+K+T              
Sbjct:     1 MIRFARPKPIIDSVSYNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKKGGGNGGGRGGD 60

Query:    60 XXDE-KQRLYDQCLNAPTPVRFLTPKDKKREIEREKLGLISKDRQREIDILKKGGKQAMG 118
               D+ K R+ DQC+NAP PVR+L PK+++RE  REKLGLISK RQ+EID  KKGG   MG
Sbjct:    61 EVDKGKGRISDQCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQKKGGSFTMG 120

Query:   119 ISDEPMIMGTPGMDLISLGLVDADKIPKYELTAEDGKRLAKECSRVLMRRHRARQAAEST 178
             ++  PM +GTPG+D ISLG+   D++PKY++T EDG RLAKE SRVLMR HRAR+ AE +
Sbjct:   121 VTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRARRVAEIS 180

Query:   179 LLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVREAT-RRSSGNE 237
             L++++  A+EALPE+LKKAALV DLTPFPV+R  ATLTPPIEGY+E++  A  R+SSG E
Sbjct:   181 LMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAARKSSGKE 240

Query:   238 KMR 240
             K+R
Sbjct:   241 KLR 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       225   0.00077  113 3  11 22  0.42    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  545 (58 KB)
  Total size of DFA:  142 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.18u 0.09s 22.27t   Elapsed:  00:00:02
  Total cpu time:  22.18u 0.09s 22.27t   Elapsed:  00:00:02
  Start:  Fri May 10 06:25:58 2013   End:  Fri May 10 06:26:00 2013

Back to top