BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026298
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53603|FTCD_PIG Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1
SV=1
Length = 541
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 154 GKRLAKECSR-VLMRRHRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTP 205
G+RLA+E V + AR A +L L+ EALPE LK+A PD P
Sbjct: 112 GQRLAEELGVPVYLYGEAARTAGRQSLPALRAGEYEALPEKLKQAEWAPDFGP 164
>sp|O88618|FTCD_RAT Formimidoyltransferase-cyclodeaminase OS=Rattus norvegicus GN=Ftcd
PE=1 SV=4
Length = 541
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 154 GKRLAKECSR-VLMRRHRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFP-VNRF 211
G+RLA+E + V + A+ + TL ++ EALPE LK+A VPD P V +
Sbjct: 112 GQRLAEELNVPVYLYGEAAQMPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSW 171
Query: 212 MATLT 216
AT+T
Sbjct: 172 GATVT 176
>sp|Q91XD4|FTCD_MOUSE Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1
SV=1
Length = 541
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 154 GKRLAKECSR-VLMRRHRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFP-VNRF 211
G+RLA+E + V + A+ + TL ++ EALPE LK+A VPD P V +
Sbjct: 112 GQRLAEELNVPVYLYGEAAQTPSRQTLPAIRAGEYEALPEKLKQAEWVPDFGPSSFVPSW 171
Query: 212 MATLT 216
AT+T
Sbjct: 172 GATVT 176
>sp|P66807|RPOE_MYCTU RNA polymerase sigma-E factor OS=Mycobacterium tuberculosis GN=rpoE
PE=3 SV=1
Length = 216
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 184 KEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVREATRRSSG 235
KEA++ALPE+ + A D+ FP + PI M ++ R+ G
Sbjct: 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRG 193
>sp|P66808|RPOE_MYCBO RNA polymerase sigma-E factor OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpoE PE=3 SV=1
Length = 216
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 184 KEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVREATRRSSG 235
KEA++ALPE+ + A D+ FP + PI M ++ R+ G
Sbjct: 142 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRG 193
>sp|Q9YH58|FTCD_CHICK Formimidoyltransferase-cyclodeaminase OS=Gallus gallus GN=FTCD PE=2
SV=1
Length = 541
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 154 GKRLAKECSR-VLMRRHRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTP--FPVNR 210
G+RL++E V + ARQ + TL ++ EALP+ L+K VPD P F V +
Sbjct: 112 GQRLSEELGVPVYLYGEAARQESRRTLPAIRAGEYEALPKKLEKPEWVPDFGPPAF-VPQ 170
Query: 211 FMATLT 216
+ AT+T
Sbjct: 171 WGATVT 176
>sp|Q8Q0T5|GATE_METMA Glutamyl-tRNA(Gln) amidotransferase subunit E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=gatE PE=3 SV=1
Length = 633
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 137 GLVDADKIPKYELTAEDGKRL-----AKECSRVLMRR---HRARQAAESTLLRLKKEAIE 188
G+ D++P Y +T ++ + L A ++M ++R A E+ +LR KEAIE
Sbjct: 342 GIFHTDELPNYGITEKEVQALRDAIGANPDDAIIMVADEPEKSRLAIEAVILR-AKEAIE 400
Query: 189 ALPEDLKKAALVPD 202
+PE+ +KA +PD
Sbjct: 401 GIPEETRKA--LPD 412
>sp|B2U2J7|AROD_SHIB3 3-dehydroquinate dehydratase OS=Shigella boydii serotype 18 (strain
CDC 3083-94 / BS512) GN=aroD PE=3 SV=1
Length = 252
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 110 KKGGKQAMGISDEPMIMGTPGMDLISLGLVDADKIPKYELTAEDGKRLAKECS-----RV 164
K+GG+QA IS E I I GLVD + + T +D + A C+ +V
Sbjct: 85 KEGGEQA--ISTEAYIALNRAA--IDSGLVDMIDLELF--TGDDQVKEAVACAHAHDVKV 138
Query: 165 LMRRHRARQA--AESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATL 215
+M H + AE + RL+K +++ D+ K AL+P T + ATL
Sbjct: 139 VMSNHDFHKTPEAEEIIARLRK--MQSFNADIPKIALMPQSTSDVLTLLAATL 189
>sp|Q1IIG5|ATPD_KORVE ATP synthase subunit delta OS=Koribacter versatilis (strain
Ellin345) GN=atpH PE=3 SV=1
Length = 179
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 136 LGLVDADKIPKYELTAEDGKRLAKECSRVLMRRHRARQAAESTLL 180
+G DA+ +EL+A+D + + ++ ++V+ + RAR +TLL
Sbjct: 105 MGFADAEVTSVHELSAQDRQMIEQQIAKVVGKSVRARYKTNATLL 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,069,179
Number of Sequences: 539616
Number of extensions: 3938404
Number of successful extensions: 10203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 10184
Number of HSP's gapped (non-prelim): 119
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)