Query 026298
Match_columns 240
No_of_seqs 79 out of 81
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 10:14:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3brd_D Protein LIN-12; protein 44.8 5.7 0.0002 25.2 0.4 14 211-224 13-26 (29)
2 3blz_A NTF2-like protein of un 29.7 15 0.00051 27.1 0.7 59 169-227 7-65 (128)
3 3fka_A Uncharacterized NTF-2 l 26.1 11 0.00037 28.3 -0.6 56 170-227 5-60 (120)
4 1mnm_A Protein (MCM1 transcrip 19.8 44 0.0015 26.0 1.7 16 62-77 84-99 (100)
5 3t98_A Nuclear pore complex pr 16.5 95 0.0032 21.6 2.6 18 173-190 20-37 (51)
6 1hbx_A SRF, serum response fac 15.1 54 0.0018 25.0 1.1 14 62-75 78-91 (92)
7 3r8n_N 30S ribosomal protein S 14.1 51 0.0017 25.5 0.8 24 9-32 51-74 (100)
8 1a93_B MAX protein, coiled coi 13.0 1.9E+02 0.0065 18.7 3.1 27 161-187 4-33 (34)
9 3bbn_N Ribosomal protein S14; 10.8 74 0.0025 24.5 0.8 21 11-31 53-73 (100)
10 2rcd_A Uncharacterized protein 10.7 4.1E+02 0.014 18.9 4.8 52 171-227 11-62 (129)
No 1
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=44.82 E-value=5.7 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.2
Q ss_pred CCCccCCCCCChHH
Q 026298 211 FMATLTPPIEGYME 224 (240)
Q Consensus 211 ~gPt~TPPIegY~e 224 (240)
..|+||||.++-++
T Consensus 13 ~A~vW~PPME~~~~ 26 (29)
T 3brd_D 13 NASVWMPPMENEEK 26 (29)
T ss_pred cccccCCCccCccc
Confidence 46899999998654
No 2
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=29.71 E-value=15 Score=27.11 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCCCcccCCCccCCCCCChHHHHH
Q 026298 169 HRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVR 227 (240)
Q Consensus 169 H~a~~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lfP~~R~gPt~TPPIegY~e~~~ 227 (240)
...+.++|..++...-+|+..-..++..++..||-.+.-....++.+.-|+..|-+.+.
T Consensus 7 ~~~d~~aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~ 65 (128)
T 3blz_A 7 YVQEYHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKLTGGPIQGLFDVID 65 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCEEEEETHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHH
Confidence 45678899999999999999998899999999998876433356666667888776654
No 3
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=26.09 E-value=11 Score=28.26 Aligned_cols=56 Identities=9% Similarity=-0.045 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCCCcccCCCccCCCCCChHHHHH
Q 026298 170 RARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVR 227 (240)
Q Consensus 170 ~a~~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lfP~~R~gPt~TPPIegY~e~~~ 227 (240)
.++.++|...|..--+|+..-..++...|..||-.++.+. .|+....|++.|-. +.
T Consensus 5 ~~d~~aI~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~~~~~~~~~~~-v~ 60 (120)
T 3fka_A 5 SEHIAALTALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGELLWNSRDAFIA-MC 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEEEEEEHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcEEEcCHHHHHh-hc
Confidence 3577889999999999999999999999999999987776 77888888999988 76
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=19.80 E-value=44 Score=25.97 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.3
Q ss_pred hHHhHHHHHhhcCCCC
Q 026298 62 DEKQRLYDQCLNAPTP 77 (240)
Q Consensus 62 ~~~~~l~~~c~nap~p 77 (240)
..-.+|++.|+|+|.|
T Consensus 84 ~~G~~lw~~cl~~~~~ 99 (100)
T 1mnm_A 84 QEGRNLIQACLNAPDD 99 (100)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred hhCCcHHHHhccCCCC
Confidence 4467899999999987
No 5
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=16.51 E-value=95 Score=21.56 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 026298 173 QAAESTLLRLKKEAIEAL 190 (240)
Q Consensus 173 ~~aI~~~l~aQqeAL~eL 190 (240)
++.|..-|..||+||..|
T Consensus 20 ~~eik~~L~~QQ~g~~~L 37 (51)
T 3t98_A 20 LREIKQHLKQQQEGLSHL 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777888888888887
No 6
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=15.07 E-value=54 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=11.3
Q ss_pred hHHhHHHHHhhcCC
Q 026298 62 DEKQRLYDQCLNAP 75 (240)
Q Consensus 62 ~~~~~l~~~c~nap 75 (240)
..=..|++.|+|+|
T Consensus 78 ~~Gk~Li~~cl~~p 91 (92)
T 1hbx_A 78 ETGKALIQTCLNSP 91 (92)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hcccHHHHHHhcCC
Confidence 33467999999998
No 7
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2ykr_N ...
Probab=14.12 E-value=51 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=19.0
Q ss_pred CccchhhhhhhhcccCCCcccccc
Q 026298 9 PLEYLSHQFLQKCSASGTPKGKAK 32 (240)
Q Consensus 9 ~~~~~~~~~~q~~~~sgt~kgk~k 32 (240)
|-+|+..++--+|.++|-|+|--.
T Consensus 51 PRnSs~~r~~nRC~~tGR~rg~~r 74 (100)
T 3r8n_N 51 PRDSSPSRQRNRCRQTGRPHGFLR 74 (100)
T ss_dssp CSTTSGGGCCCCBTTTBCSSSCCG
T ss_pred ccccchhhhcccccCCCCCceecC
Confidence 336777788889999999998543
No 8
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=13.02 E-value=1.9e+02 Score=18.74 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 026298 161 CSRVLMRRHRARQAAES---TLLRLKKEAI 187 (240)
Q Consensus 161 WSRyKmrEH~a~~~aI~---~~l~aQqeAL 187 (240)
|.|-|...|.+++.++. .+|+.|-.+|
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34566777777766653 4555555544
No 9
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=10.84 E-value=74 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=16.5
Q ss_pred cchhhhhhhhcccCCCccccc
Q 026298 11 EYLSHQFLQKCSASGTPKGKA 31 (240)
Q Consensus 11 ~~~~~~~~q~~~~sgt~kgk~ 31 (240)
+++.-++--+|.++|.|+|--
T Consensus 53 ns~~~r~~nRC~~tGR~rg~~ 73 (100)
T 3bbn_N 53 NSAPARLHRRCFLTGRPRANI 73 (100)
T ss_dssp SCCGGGCCCCCSSSCCSSSBC
T ss_pred ccccccccccccCCCCCceee
Confidence 555666677999999999864
No 10
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=10.73 E-value=4.1e+02 Score=18.90 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCCCcccCCCccCCCCCChHHHHH
Q 026298 171 ARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVR 227 (240)
Q Consensus 171 a~~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lfP~~R~gPt~TPPIegY~e~~~ 227 (240)
....+|..+++...+|++.=.-+...+...+|..++.+. .++ ++-|+++..+
T Consensus 11 ~~~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~-~~~----~~~G~~~i~~ 62 (129)
T 2rcd_A 11 DVLADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYG-AGE----NLYGIEEIRA 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEE-TTE----EEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEEC-CCC----ccCCHHHHHH
Confidence 446789999999999999988788899999998887776 444 3458876655
Done!