Query 026298
Match_columns 240
No_of_seqs 79 out of 81
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 10:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2lhba_ a.1.1.2 (A:) Lamprey g 16.8 1.6E+02 0.012 20.5 6.2 25 143-167 5-29 (149)
2 d1vlia1 b.85.1.1 (A:297-368) S 15.0 35 0.0025 22.5 1.8 26 30-55 13-38 (72)
3 d1it2a_ a.1.1.2 (A:) Hagfish h 14.8 1.6E+02 0.011 20.6 5.6 25 142-166 4-28 (146)
4 d2rcda1 d.17.4.18 (A:1-127) Un 12.8 90 0.0066 20.5 3.6 50 173-227 12-61 (127)
5 d2ux0a1 d.17.4.7 (A:387-521) A 12.5 84 0.0061 20.2 3.2 41 166-206 3-43 (135)
6 d2qaln1 g.39.1.7 (N:1-100) Rib 12.1 25 0.0018 25.1 0.3 23 9-31 51-73 (100)
7 d1fsla_ a.1.1.2 (A:) Leghemogl 10.7 2.2E+02 0.016 19.0 5.3 22 148-169 2-23 (143)
8 d3b7ca1 d.17.4.16 (A:1-121) Un 10.5 1.5E+02 0.011 18.9 4.0 50 173-227 3-52 (121)
9 d1x6ma_ b.88.1.4 (A:) Glutathi 10.4 30 0.0022 27.3 0.3 13 129-141 120-132 (196)
10 d1kz7a2 b.55.1.1 (A:819-965) D 10.0 1.3E+02 0.0096 21.2 3.8 19 168-186 115-133 (147)
No 1
>d2lhba_ a.1.1.2 (A:) Lamprey globin {Sea lamprey (Petromyzon marinus) [TaxId: 7757]}
Probab=16.75 E-value=1.6e+02 Score=20.55 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Q 026298 143 KIPKYELTAEDGKRLAKECSRVLMR 167 (240)
Q Consensus 143 ~Rp~~eLs~EE~erL~KEWSRyKmr 167 (240)
..|...||.+|...+..-|..+...
T Consensus 5 ~~~~~~Ls~~e~~~I~~sW~~v~~~ 29 (149)
T d2lhba_ 5 TGSVAPLSAAEKTKIRSAWAPVYST 29 (149)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678889999999999999999754
No 2
>d1vlia1 b.85.1.1 (A:297-368) Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.98 E-value=35 Score=22.53 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=21.0
Q ss_pred cccccccccccccccccccCCCCCCC
Q 026298 30 KAKMKAGQQLKRSKITTKKGSSPAKG 55 (240)
Q Consensus 30 k~k~k~g~~lkr~~~~~kk~~~~~~~ 55 (240)
+..++.|+.+..+-|+.+++|.+..|
T Consensus 13 ~kdi~kG~~it~~di~~~RPg~~~~G 38 (72)
T d1vlia1 13 TAPIQKGEAFSEDNIAVLRPGQKPQG 38 (72)
T ss_dssp SSCBCTTCBCCTTTEEEECCTTSCCC
T ss_pred ecccCCCCCccHHHeEEECCCCCCCC
Confidence 35688999999999999998764433
No 3
>d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}
Probab=14.78 E-value=1.6e+02 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH
Q 026298 142 DKIPKYELTAEDGKRLAKECSRVLM 166 (240)
Q Consensus 142 R~Rp~~eLs~EE~erL~KEWSRyKm 166 (240)
...|...||.+|...+..-|+.+..
T Consensus 4 ~~~~~~~LT~~e~~lI~~sW~~v~~ 28 (146)
T d1it2a_ 4 DQGPLPTLTDGDKKAINKIWPKIYK 28 (146)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3578889999999999999999853
No 4
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=12.83 E-value=90 Score=20.55 Aligned_cols=50 Identities=10% Similarity=-0.067 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCCCcccCCCccCCCCCChHHHHH
Q 026298 173 QAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVR 227 (240)
Q Consensus 173 ~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lfP~~R~gPt~TPPIegY~e~~~ 227 (240)
.+.|..+++...+|++.=.-+-+.+...+|..++++...+ ++.|+++...
T Consensus 12 ~aeI~a~~~~~~~A~~~~D~~~l~~l~a~D~~~~~~~~~~-----~~~g~~~~~~ 61 (127)
T d2rcda1 12 LADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGE-----NLYGIEEIRA 61 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTE-----EEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCcEEEeCCCc-----ccccHHHHHH
Confidence 5678899999999999988888888999999998876544 4677776543
No 5
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.45 E-value=84 Score=20.19 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCC
Q 026298 166 MRRHRARQAAESTLLRLKKEAIEALPEDLKKAALVPDLTPF 206 (240)
Q Consensus 166 mrEH~a~~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lf 206 (240)
...+.++.+.|..+++...+|++.-.-+-+.+.+-+|...|
T Consensus 3 ~~d~~~~~~eI~~l~~~~~~A~~~~D~~~~~~~~~~d~~~~ 43 (135)
T d2ux0a1 3 DEDLKVRKQEIIKITEQLIEAINNGDFEAYTKICDPGLTSF 43 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEE
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcCCHHHHHHhCcCCCcEE
Confidence 45677889999999999999999998888888888887765
No 6
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
Probab=12.10 E-value=25 Score=25.10 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.3
Q ss_pred CccchhhhhhhhcccCCCccccc
Q 026298 9 PLEYLSHQFLQKCSASGTPKGKA 31 (240)
Q Consensus 9 ~~~~~~~~~~q~~~~sgt~kgk~ 31 (240)
|-+|+..++-.||.++|-|+|--
T Consensus 51 Prnss~tRirnRC~~TGR~Rg~~ 73 (100)
T d2qaln1 51 PRDSSPSRQRNRCRQTGRPHGFL 73 (100)
T ss_dssp TSTTCSTTCCCCCSSSCCSSSCB
T ss_pred CccchhHHHHhhhccCCCcceee
Confidence 33677778888999999999854
No 7
>d1fsla_ a.1.1.2 (A:) Leghemoglobin {Soybean (Glycine max), isoform A [TaxId: 3847]}
Probab=10.68 E-value=2.2e+02 Score=19.04 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 026298 148 ELTAEDGKRLAKECSRVLMRRH 169 (240)
Q Consensus 148 eLs~EE~erL~KEWSRyKmrEH 169 (240)
.||.+|...+.+-|+.++.+-.
T Consensus 2 slT~~q~~li~~SW~~v~~~~~ 23 (143)
T d1fsla_ 2 AFTEKQDALVSSSFEAFKANIP 23 (143)
T ss_dssp CCCHHHHHHHHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHHhhHH
Confidence 5898999999999999977543
No 8
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}
Probab=10.48 E-value=1.5e+02 Score=18.93 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHhhCCCCCCCCcccCCCccCCCCCChHHHHH
Q 026298 173 QAAESTLLRLKKEAIEALPEDLKKAALVPDLTPFPVNRFMATLTPPIEGYMEKVR 227 (240)
Q Consensus 173 ~~aI~~~l~aQqeAL~eLsEeLy~AAi~pD~~lfP~~R~gPt~TPPIegY~e~~~ 227 (240)
..+|..+|+.-.+|+++-.-+-|.+...+|..++.+...+ +..|+++...
T Consensus 3 ~~eI~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~~~~~-----~~~g~~~i~~ 52 (121)
T d3b7ca1 3 TDDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLA 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhccCcceEecCCc-----ceecHHHHHH
Confidence 3579999999999999999999999999998887544322 3567776554
No 9
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Probab=10.43 E-value=30 Score=27.33 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=12.2
Q ss_pred CCCccccccCCcc
Q 026298 129 PGMDLISLGLVDA 141 (240)
Q Consensus 129 p~lDfiplkllDe 141 (240)
|||+||+++++|+
T Consensus 120 ~Gl~~I~~G~lDd 132 (196)
T d1x6ma_ 120 YGLDFVHTELSDE 132 (196)
T ss_dssp TTEEEECGGGBSC
T ss_pred cceeEEEeeeeCC
Confidence 5999999999999
No 10
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.00 E-value=1.3e+02 Score=21.16 Aligned_cols=19 Identities=21% Similarity=0.059 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026298 168 RHRARQAAESTLLRLKKEA 186 (240)
Q Consensus 168 EH~a~~~aI~~~l~aQqeA 186 (240)
+..+|+.+|..+|.-|..|
T Consensus 115 eK~~W~~~I~~~l~~q~~~ 133 (147)
T d1kz7a2 115 IKAAWVNAIRKVLTSQLQA 133 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677788888877766555
Done!