Query 026301
Match_columns 240
No_of_seqs 187 out of 1194
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0157 NadC Nicotinate-nucleo 100.0 4.7E-46 1E-50 337.9 17.4 142 98-240 2-145 (280)
2 PLN02716 nicotinate-nucleotide 100.0 1.5E-45 3.3E-50 339.0 19.2 152 89-240 6-157 (308)
3 PRK06106 nicotinate-nucleotide 100.0 2.4E-45 5.3E-50 334.0 18.9 144 97-240 6-151 (281)
4 PRK07428 nicotinate-nucleotide 100.0 5.1E-45 1.1E-49 332.6 18.7 149 88-240 2-153 (288)
5 PRK06543 nicotinate-nucleotide 100.0 4.8E-45 1E-49 332.1 18.4 140 100-240 5-146 (281)
6 PRK06978 nicotinate-nucleotide 100.0 1E-44 2.2E-49 331.8 18.1 138 101-240 24-163 (294)
7 PRK06559 nicotinate-nucleotide 100.0 2.6E-44 5.6E-49 328.6 18.6 144 96-240 7-154 (290)
8 PRK08072 nicotinate-nucleotide 100.0 5E-44 1.1E-48 324.4 17.8 139 101-240 5-145 (277)
9 PRK05742 nicotinate-nucleotide 100.0 1.1E-43 2.5E-48 322.2 18.0 139 100-240 7-147 (277)
10 PRK06096 molybdenum transport 100.0 1.1E-43 2.3E-48 323.6 17.5 136 102-240 5-144 (284)
11 PRK07896 nicotinate-nucleotide 100.0 2.7E-43 5.9E-48 321.7 18.8 147 93-240 6-157 (289)
12 TIGR01334 modD putative molybd 100.0 3.1E-43 6.7E-48 319.6 17.4 136 102-240 4-143 (277)
13 PRK09016 quinolinate phosphori 100.0 4.6E-43 9.9E-48 321.2 18.2 140 100-240 21-166 (296)
14 cd01572 QPRTase Quinolinate ph 100.0 5.9E-43 1.3E-47 315.2 17.4 136 104-240 2-139 (268)
15 cd01573 modD_like ModD; Quinol 100.0 1.4E-42 3E-47 313.4 17.1 134 104-240 2-139 (272)
16 PRK08385 nicotinate-nucleotide 100.0 2E-42 4.4E-47 314.3 17.2 134 104-240 4-141 (278)
17 TIGR00078 nadC nicotinate-nucl 100.0 2.3E-42 4.9E-47 311.2 16.4 133 105-240 1-135 (265)
18 PRK05848 nicotinate-nucleotide 100.0 3.7E-42 8E-47 311.8 17.6 136 101-240 2-139 (273)
19 cd01568 QPRTase_NadC Quinolina 100.0 6E-42 1.3E-46 308.2 16.6 135 104-240 2-138 (269)
20 KOG3008 Quinolinate phosphorib 100.0 1.3E-37 2.8E-42 277.7 9.1 147 87-240 4-154 (300)
21 PRK08662 nicotinate phosphorib 100.0 7.2E-33 1.6E-37 257.7 13.7 131 104-240 10-150 (343)
22 cd01571 NAPRTase_B Nicotinate 100.0 9.1E-31 2E-35 239.5 9.6 121 117-240 7-133 (302)
23 PF02749 QRPTase_N: Quinolinat 99.9 9.1E-28 2E-32 183.6 9.5 88 114-204 1-88 (88)
24 cd00516 PRTase_typeII Phosphor 99.9 5.4E-27 1.2E-31 208.9 14.6 122 119-240 1-133 (281)
25 PRK07188 nicotinate phosphorib 99.9 5.2E-27 1.1E-31 219.6 12.4 140 99-240 6-152 (352)
26 PRK09243 nicotinate phosphorib 99.1 4.9E-10 1.1E-14 108.8 10.2 121 107-231 8-167 (464)
27 cd01570 NAPRTase_A Nicotinate 99.0 2.5E-09 5.4E-14 99.5 12.2 103 128-231 21-158 (327)
28 cd01567 NAPRTase_PncB Nicotina 98.8 5.8E-08 1.2E-12 90.1 11.2 104 128-231 20-169 (343)
29 TIGR01513 NAPRTase_put putativ 98.5 1.4E-06 2.9E-11 84.7 12.0 101 129-230 22-157 (443)
30 COG1488 PncB Nicotinic acid ph 98.5 7.8E-07 1.7E-11 85.5 9.5 129 100-231 5-170 (405)
31 PRK12484 nicotinate phosphorib 98.4 2.2E-06 4.7E-11 83.3 11.5 99 130-229 26-159 (443)
32 PRK09198 putative nicotinate p 97.8 0.0001 2.3E-09 72.2 10.0 71 148-218 83-158 (463)
33 cd01569 PBEF_like pre-B-cell c 97.6 0.00035 7.5E-09 67.7 9.6 71 148-218 81-156 (407)
34 PHA02594 nadV nicotinamide pho 97.4 0.00086 1.9E-08 66.1 9.0 57 161-218 101-161 (470)
35 PLN02885 nicotinate phosphorib 97.2 0.0029 6.2E-08 63.4 10.6 63 166-228 105-170 (545)
36 cd01401 PncB_like Nicotinate p 95.8 0.041 8.8E-07 53.0 8.1 63 168-230 88-176 (377)
37 PRK05321 nicotinate phosphorib 94.3 0.27 5.8E-06 47.8 9.2 54 176-229 106-178 (400)
38 PF13533 Biotin_lipoyl_2: Biot 91.0 0.22 4.7E-06 34.4 2.6 26 163-188 14-39 (50)
39 TIGR01514 NAPRTase nicotinate 90.2 1.2 2.5E-05 43.5 7.7 54 175-228 101-178 (394)
40 PF07831 PYNP_C: Pyrimidine nu 87.7 1.4 3E-05 33.2 5.0 39 157-195 28-67 (75)
41 PF00364 Biotin_lipoyl: Biotin 86.0 0.73 1.6E-05 33.9 2.7 23 163-185 18-40 (74)
42 PRK05889 putative acetyl-CoA c 84.3 1.3 2.7E-05 32.2 3.2 26 161-186 12-37 (71)
43 PRK06748 hypothetical protein; 82.5 1.7 3.6E-05 33.7 3.4 24 161-184 14-37 (83)
44 TIGR02645 ARCH_P_rylase putati 80.4 17 0.00036 36.7 10.4 64 129-192 409-478 (493)
45 PF10011 DUF2254: Predicted me 77.5 19 0.0004 34.3 9.4 47 135-183 197-245 (371)
46 PRK08225 acetyl-CoA carboxylas 76.2 3.4 7.5E-05 29.6 3.2 24 162-185 12-35 (70)
47 PRK06078 pyrimidine-nucleoside 75.8 33 0.00071 34.1 10.8 60 129-188 331-403 (434)
48 PRK14875 acetoin dehydrogenase 75.8 3 6.6E-05 37.3 3.5 23 163-185 20-42 (371)
49 COG0508 AceF Pyruvate/2-oxoglu 75.3 2.7 5.8E-05 40.7 3.2 23 163-185 20-42 (404)
50 PRK05820 deoA thymidine phosph 73.5 18 0.00039 35.9 8.4 61 129-189 336-409 (440)
51 TIGR03327 AMP_phos AMP phospho 73.4 35 0.00076 34.5 10.5 63 129-191 410-478 (500)
52 cd06850 biotinyl_domain The bi 73.3 4.3 9.3E-05 27.6 3.0 23 162-184 9-32 (67)
53 TIGR02644 Y_phosphoryl pyrimid 72.7 11 0.00025 36.8 6.8 60 129-188 329-401 (405)
54 KOG0557 Dihydrolipoamide acety 72.0 3.1 6.7E-05 41.5 2.8 25 162-186 55-79 (470)
55 PRK04350 thymidine phosphoryla 71.9 26 0.00056 35.4 9.1 64 129-192 401-470 (490)
56 COG0213 DeoA Thymidine phospho 69.8 21 0.00046 35.5 7.8 64 129-192 332-408 (435)
57 COG0511 AccB Biotin carboxyl c 66.2 6.5 0.00014 32.6 3.1 19 165-183 84-102 (140)
58 cd06850 biotinyl_domain The bi 65.8 16 0.00035 24.7 4.6 33 132-182 35-67 (67)
59 PF00529 HlyD: HlyD family sec 65.1 4 8.6E-05 35.9 1.8 25 162-186 12-36 (305)
60 TIGR02643 T_phosphoryl thymidi 64.7 35 0.00076 33.9 8.3 62 129-190 335-409 (437)
61 cd06663 Biotinyl_lipoyl_domain 63.4 12 0.00026 26.5 3.7 25 161-185 15-39 (73)
62 PTZ00144 dihydrolipoamide succ 61.5 8.4 0.00018 37.8 3.4 19 165-183 101-119 (418)
63 PRK08225 acetyl-CoA carboxylas 60.8 9.5 0.00021 27.3 2.8 21 163-183 50-70 (70)
64 PRK05641 putative acetyl-CoA c 59.9 9.9 0.00022 32.4 3.2 22 164-185 97-118 (153)
65 PF12700 HlyD_2: HlyD family s 57.8 11 0.00024 33.4 3.3 26 162-187 31-56 (328)
66 TIGR02971 heterocyst_DevB ABC 57.4 30 0.00066 31.4 6.1 24 163-186 28-51 (327)
67 KOG2511 Nicotinic acid phospho 56.8 6.1 0.00013 38.5 1.6 53 165-217 99-151 (420)
68 TIGR00830 PTBA PTS system, glu 56.3 12 0.00026 30.8 3.0 22 162-183 81-102 (121)
69 PLN02226 2-oxoglutarate dehydr 56.0 12 0.00025 37.4 3.4 22 164-185 147-168 (463)
70 PRK06549 acetyl-CoA carboxylas 51.9 18 0.00039 30.1 3.4 21 164-184 74-94 (130)
71 cd06848 GCS_H Glycine cleavage 51.8 36 0.00078 26.0 4.9 39 143-185 16-55 (96)
72 cd00210 PTS_IIA_glc PTS_IIA, P 51.7 15 0.00033 30.2 2.9 22 162-183 81-102 (124)
73 TIGR01347 sucB 2-oxoglutarate 51.6 16 0.00034 35.6 3.4 19 165-183 57-75 (403)
74 TIGR01843 type_I_hlyD type I s 49.8 12 0.00026 34.5 2.3 27 161-187 53-79 (423)
75 TIGR00998 8a0101 efflux pump m 49.1 14 0.00031 33.3 2.6 23 164-186 55-77 (334)
76 PRK15136 multidrug efflux syst 48.6 16 0.00036 34.7 3.0 23 164-186 74-96 (390)
77 PRK09439 PTS system glucose-sp 48.3 18 0.0004 31.4 3.0 21 163-183 104-124 (169)
78 PRK05704 dihydrolipoamide succ 47.9 18 0.00039 35.2 3.2 21 165-185 59-79 (407)
79 PRK07051 hypothetical protein; 47.6 24 0.00052 26.2 3.2 20 164-183 60-79 (80)
80 PRK03598 putative efflux pump 46.3 18 0.00039 33.1 2.9 24 163-186 55-78 (331)
81 PRK10559 p-hydroxybenzoic acid 46.2 16 0.00036 33.6 2.6 24 163-186 59-82 (310)
82 TIGR01000 bacteriocin_acc bact 45.4 16 0.00036 35.3 2.5 27 160-186 68-94 (457)
83 PF00358 PTS_EIIA_1: phosphoen 45.2 17 0.00037 30.3 2.2 22 162-183 85-106 (132)
84 PLN02983 biotin carboxyl carri 44.7 17 0.00036 34.2 2.3 22 164-185 217-238 (274)
85 cd03522 MoeA_like MoeA_like. T 43.1 78 0.0017 29.9 6.6 56 128-185 75-130 (312)
86 PRK10476 multidrug resistance 42.5 25 0.00055 32.4 3.2 23 163-185 60-82 (346)
87 COG2190 NagE Phosphotransferas 42.1 24 0.00052 30.5 2.8 21 163-183 89-109 (156)
88 COG0511 AccB Biotin carboxyl c 42.1 29 0.00063 28.7 3.2 23 161-183 117-139 (140)
89 TIGR01730 RND_mfp RND family e 41.6 53 0.0012 29.0 5.0 23 164-186 39-61 (322)
90 PRK07051 hypothetical protein; 41.6 25 0.00055 26.1 2.5 22 164-185 23-44 (80)
91 PRK11854 aceF pyruvate dehydro 41.5 22 0.00048 36.4 2.9 22 162-183 221-242 (633)
92 TIGR00531 BCCP acetyl-CoA carb 40.7 22 0.00048 30.1 2.3 22 163-184 99-120 (156)
93 PF00364 Biotin_lipoyl: Biotin 39.5 27 0.00058 25.5 2.3 36 129-182 39-74 (74)
94 TIGR01348 PDHac_trf_long pyruv 39.0 26 0.00057 35.2 2.9 20 163-182 133-152 (546)
95 PLN02744 dihydrolipoyllysine-r 38.9 27 0.00059 35.5 3.0 19 166-184 170-189 (539)
96 TIGR02927 SucB_Actino 2-oxoglu 38.9 30 0.00064 35.3 3.3 19 165-183 192-210 (590)
97 TIGR03794 NHPM_micro_HlyD NHPM 38.0 30 0.00066 32.9 3.0 24 164-187 71-94 (421)
98 PRK11855 dihydrolipoamide acet 37.4 32 0.00069 34.5 3.2 17 167-183 177-193 (547)
99 PF05896 NQRA: Na(+)-transloca 37.0 27 0.00059 32.4 2.4 35 160-194 38-84 (257)
100 TIGR01108 oadA oxaloacetate de 36.9 33 0.00072 35.0 3.3 25 160-184 526-550 (582)
101 PRK06302 acetyl-CoA carboxylas 36.7 28 0.00062 29.3 2.4 23 163-185 98-120 (155)
102 PRK14042 pyruvate carboxylase 36.6 35 0.00076 35.1 3.4 26 160-185 534-559 (596)
103 PRK09578 periplasmic multidrug 36.3 77 0.0017 29.7 5.4 22 164-185 76-97 (385)
104 PLN02528 2-oxoisovalerate dehy 34.4 40 0.00086 32.9 3.3 19 165-183 55-73 (416)
105 PRK05889 putative acetyl-CoA c 34.4 49 0.0011 23.8 3.0 19 164-182 52-70 (71)
106 PRK11578 macrolide transporter 34.1 36 0.00078 31.7 2.8 22 164-185 74-95 (370)
107 cd06849 lipoyl_domain Lipoyl d 33.5 62 0.0013 21.1 3.2 22 163-184 18-39 (74)
108 PRK11856 branched-chain alpha- 33.1 45 0.00098 31.9 3.4 19 164-182 21-39 (411)
109 PRK15030 multidrug efflux syst 33.0 1.6E+02 0.0036 27.8 7.1 21 165-185 79-99 (397)
110 PRK11556 multidrug efflux syst 32.2 43 0.00093 32.2 3.1 23 164-186 100-122 (415)
111 PF13375 RnfC_N: RnfC Barrel s 32.2 35 0.00076 27.0 2.1 25 161-185 40-64 (101)
112 COG0845 AcrA Membrane-fusion p 31.8 1.2E+02 0.0027 26.2 5.7 24 161-184 76-99 (372)
113 PRK09783 copper/silver efflux 30.7 79 0.0017 30.4 4.6 22 165-186 137-159 (409)
114 PRK09859 multidrug efflux syst 30.6 47 0.001 31.2 3.0 21 165-185 75-95 (385)
115 PRK11854 aceF pyruvate dehydro 30.0 49 0.0011 33.9 3.2 22 164-185 56-77 (633)
116 TIGR01349 PDHac_trf_mito pyruv 29.1 52 0.0011 32.3 3.1 19 165-183 56-75 (435)
117 KOG0559 Dihydrolipoamide succi 28.4 67 0.0014 31.9 3.6 71 91-184 74-148 (457)
118 PRK14040 oxaloacetate decarbox 28.4 55 0.0012 33.5 3.3 26 160-185 533-558 (593)
119 PRK11855 dihydrolipoamide acet 28.0 61 0.0013 32.5 3.4 24 162-185 18-41 (547)
120 PF09324 DUF1981: Domain of un 27.5 50 0.0011 25.1 2.2 33 183-215 47-84 (86)
121 PF02843 GARS_C: Phosphoribosy 26.8 87 0.0019 24.2 3.4 36 167-202 41-76 (93)
122 COG1566 EmrA Multidrug resista 26.0 62 0.0013 31.2 3.0 26 161-186 63-88 (352)
123 PRK06748 hypothetical protein; 25.4 82 0.0018 24.3 3.0 34 132-183 41-74 (83)
124 TIGR02712 urea_carbox urea car 25.4 64 0.0014 35.8 3.2 24 162-185 1143-1166(1201)
125 TIGR02927 SucB_Actino 2-oxoglu 25.0 74 0.0016 32.5 3.4 24 162-185 19-42 (590)
126 PRK11892 pyruvate dehydrogenas 24.6 72 0.0016 31.7 3.2 22 163-184 20-41 (464)
127 TIGR01348 PDHac_trf_long pyruv 24.5 74 0.0016 32.1 3.3 22 163-184 17-38 (546)
128 cd01433 Ribosomal_L16_L10e Rib 24.4 1.1E+02 0.0023 24.3 3.6 16 172-187 75-90 (112)
129 PF00936 BMC: BMC domain; Int 24.4 2.1E+02 0.0046 21.1 5.0 55 142-202 10-64 (75)
130 TIGR00531 BCCP acetyl-CoA carb 24.3 73 0.0016 26.9 2.8 21 163-183 136-156 (156)
131 PRK06302 acetyl-CoA carboxylas 23.8 76 0.0017 26.8 2.8 23 161-183 133-155 (155)
132 COG1726 NqrA Na+-transporting 23.4 17 0.00037 35.8 -1.3 15 167-181 45-59 (447)
133 TIGR01235 pyruv_carbox pyruvat 22.8 85 0.0018 34.8 3.6 25 160-184 1083-1107(1143)
134 TIGR03077 not_gcvH glycine cle 22.7 1.2E+02 0.0026 24.5 3.6 40 142-185 16-56 (110)
135 PF01551 Peptidase_M23: Peptid 22.1 80 0.0017 23.5 2.4 20 166-185 56-75 (96)
136 TIGR01995 PTS-II-ABC-beta PTS 22.0 74 0.0016 32.6 2.8 21 163-183 546-566 (610)
137 PRK09824 PTS system beta-gluco 20.4 80 0.0017 32.7 2.7 21 163-183 562-582 (627)
138 PRK00624 glycine cleavage syst 20.3 1.3E+02 0.0029 24.4 3.4 40 142-185 18-58 (114)
No 1
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-46 Score=337.93 Aligned_cols=142 Identities=45% Similarity=0.732 Sum_probs=137.2
Q ss_pred CchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCC
Q 026301 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177 (240)
Q Consensus 98 ~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~ 177 (240)
+...+++.++.||.||+| +||+||+++++++.++++.+++||+||+||++++.++|+.+||+++++|.++||+++++|+
T Consensus 2 ~~~~~~~~v~~~L~ED~g-~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~ 80 (280)
T COG0157 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD 80 (280)
T ss_pred chhhHHHHHHHHHHhhcC-CCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCC
Confidence 346789999999999998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 178 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 178 ~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
+|++++|+++.||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 81 ~i~~~~G~a~~lL~~ER~aLN~L~~lSGIAT~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV 145 (280)
T COG0157 81 VLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLLEKYAV 145 (280)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccCcEEEeccCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999994 6899999999999999999997
No 2
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=100.00 E-value=1.5e-45 Score=339.00 Aligned_cols=152 Identities=78% Similarity=1.184 Sum_probs=145.1
Q ss_pred CCcccCCCCCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcC
Q 026301 89 SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168 (240)
Q Consensus 89 ~~~~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~ 168 (240)
.|...++.+|...+++.|++||+||+|.+||+||.++++++.+++++|++|++||+||++++.++|+.+|++++++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~L~ED~~~~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~ 85 (308)
T PLN02716 6 AMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAI 85 (308)
T ss_pred ccccccccCChHHHHHHHHHHHHHhCCCCCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeC
Confidence 35667777887789999999999999746999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEeecCCCCcCchhHhhhcC
Q 026301 169 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 169 DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~IldTRKT~PGlR~leKyAV 240 (240)
||+.|++|++|++++|++++||++||++||||||+|||||+|++||+++.+++|+|||||+||+|.+|||||
T Consensus 86 dG~~v~~G~~i~~v~G~a~~il~~ER~aLN~L~~~SGIAT~T~~~V~~~~~~~I~~TRKT~PGlR~l~k~AV 157 (308)
T PLN02716 86 DGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157 (308)
T ss_pred CCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEeeecCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988899999999999999999997
No 3
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.4e-45 Score=334.04 Aligned_cols=144 Identities=40% Similarity=0.610 Sum_probs=137.5
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCC
Q 026301 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (240)
Q Consensus 97 ~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G 176 (240)
++.+.++++|++||+||+|.+||+||.++++++..++++|++||+||+||++++.++|+.+|++++++|+++||+.+++|
T Consensus 6 ~~~~~~~~~i~~~l~ED~~~~gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g 85 (281)
T PRK06106 6 LPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPG 85 (281)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCC
Confidence 45457999999999999973599999999998999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 177 ~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 86 ~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 151 (281)
T PRK06106 86 DVIATISGPARGLLTAERTALNFLCHLSGIATATASIVAAIAGTKAKVVCTRKTTPGLRALEKYAV 151 (281)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999 46899999999999999999997
No 4
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5.1e-45 Score=332.64 Aligned_cols=149 Identities=36% Similarity=0.567 Sum_probs=141.5
Q ss_pred CCCcccCCCCCchhHHHHHHHHHHhhcCCCCCcccccccCCC-cEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEE
Q 026301 88 ESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (240)
Q Consensus 88 ~~~~~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~-~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~ 166 (240)
+||...||. ..+++.|+.||+||+| +||+||+++++++ .+++++|++||+||+||+++++++|+.+|++++++|+
T Consensus 2 ~~~~~~~~~---~~~~~~i~~~l~ED~~-~~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~ 77 (288)
T PRK07428 2 SSMAMLPPW---LVLDPLLQQWLREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPL 77 (288)
T ss_pred CCcccCCcc---hhHHHHHHHHHHhcCC-CCCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEE
Confidence 467778877 5688999999999998 7999999988888 8999999999999999999999999999988888999
Q ss_pred cCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 167 v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++||+.|++|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 78 ~~dG~~v~~g~~i~~~~G~a~~ll~~eR~~lN~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV 153 (288)
T PRK07428 78 VAEGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADLPTQLVDTRKTTPGLRLLEKYAT 153 (288)
T ss_pred cCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 46999999999999999999997
No 5
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=4.8e-45 Score=332.12 Aligned_cols=140 Identities=43% Similarity=0.662 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEE
Q 026301 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~I 179 (240)
..+++.|+.||+||+| |||+||..+++++..++++|++||+||+||++++.++|+.+|++++++|+++||+.+++|++|
T Consensus 5 ~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G~~i 83 (281)
T PRK06543 5 HIIDRIVEAALAEDAP-WGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAGDIL 83 (281)
T ss_pred HHHHHHHHHHHHhCCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCCCEE
Confidence 4478999999999998 799999999988999999999999999999999999999999889999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 180 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 180 l~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++++|++++||++||++||||||+|||||+||+||+++ ++++|+|||||+||+|.+|||||
T Consensus 84 ~~~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 146 (281)
T PRK06543 84 ATVTGPARSVLTAERIALNFTQRMSGIATLTAAFVDAVNGTRARIVDTRKTTPGLRIFERYAV 146 (281)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999 46999999999999999999997
No 6
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1e-44 Score=331.83 Aligned_cols=138 Identities=36% Similarity=0.601 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEE
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il 180 (240)
.++++|++||+||+| +||+|| .+++++..++++|++||+||+||+++++++|+.+|++++++|+++||+.|++|++|+
T Consensus 24 ~~~~~i~~~L~ED~~-~gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i~ 101 (294)
T PRK06978 24 AIARNVADAIAEDVG-SGDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTVC 101 (294)
T ss_pred HHHHHHHHHHHhcCC-CCCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEEE
Confidence 489999999999998 799999 566778899999999999999999999999999998999999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 181 ~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
+++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 102 ~~~G~a~~lL~~ER~aLN~l~~~SGIAT~T~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV 163 (294)
T PRK06978 102 ELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARILDTRKTLPGLRLAQKYAV 163 (294)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCCCCCchhHHHHHHH
Confidence 9999999999999999999999999999999999998 56999999999999999999997
No 7
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.6e-44 Score=328.59 Aligned_cols=144 Identities=32% Similarity=0.526 Sum_probs=137.3
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEc--CCCCce
Q 026301 96 SHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KDGDHV 173 (240)
Q Consensus 96 ~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v--~DG~~V 173 (240)
..|.+.++++|+.||+||+| +||+||.++++++.++++++++||+||+||++++.++|+.+|++++++|++ +||+.+
T Consensus 7 ~~~~~~~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~~v 85 (290)
T PRK06559 7 DLTPFQIDDTLKAALREDVH-SEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRL 85 (290)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCCCCEe
Confidence 34445799999999999998 799999999998999999999999999999999999999999889999988 999999
Q ss_pred eCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 174 ~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 86 ~~G~~i~~v~G~a~~ll~~ER~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 154 (290)
T PRK06559 86 TSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAV 154 (290)
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999998 46999999999999999999997
No 8
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=5e-44 Score=324.39 Aligned_cols=139 Identities=42% Similarity=0.593 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEE
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il 180 (240)
.++++|++||+||+| +||+||.++++.+..+++.|++|++||+||++++.++|+.+|++++++|+++||+.|++|++|+
T Consensus 5 ~~~~~i~~~l~ED~~-~~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~ 83 (277)
T PRK08072 5 KLKQALNRFFLEDIG-EGDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIA 83 (277)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEE
Confidence 588999999999998 7999999887777689999999999999999999999999998899999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 181 ~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
+++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 84 ~~~G~~~~ll~~er~~ln~l~~~sGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 145 (277)
T PRK08072 84 TVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSHIRICDTRKTTPGLRMFDKYAV 145 (277)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999 46899999999999999999997
No 9
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.1e-43 Score=322.17 Aligned_cols=139 Identities=40% Similarity=0.659 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEE
Q 026301 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~I 179 (240)
..+++.|+.||+||+| |||+|| .+++.+.+++++|++||+||+||++++.++|+.+|++++++|+++||+.|++|++|
T Consensus 7 ~~~~~~i~~~l~ED~~-~gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i 84 (277)
T PRK05742 7 AEIEANVRRALAEDIG-SGDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVL 84 (277)
T ss_pred HHHHHHHHHHHHhcCC-CCCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEE
Confidence 4678999999999998 799999 45667889999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 180 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 180 l~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 85 ~~i~G~~~~ll~~ER~~ln~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 147 (277)
T PRK05742 85 FHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLLDTRKTLPGLRLAQKYAV 147 (277)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999 46999999999999999999997
No 10
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=100.00 E-value=1.1e-43 Score=323.58 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEE
Q 026301 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 181 (240)
Q Consensus 102 l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~ 181 (240)
-++.|++||+||+| |||+||.++++++..+++++++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++
T Consensus 5 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~ 81 (284)
T PRK06096 5 SDAQLDALLLEDIQ-GGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLIS 81 (284)
T ss_pred cHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 45779999999998 899999999999999999999999999999999999999997 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCEEeecCCCCcCchhHhhhcC
Q 026301 182 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 182 i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa----~~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 82 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV 144 (284)
T PRK06096 82 AQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAV 144 (284)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHH
Confidence 999999999999999999999999999999999988 46999999999999999999997
No 11
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.7e-43 Score=321.67 Aligned_cols=147 Identities=35% Similarity=0.511 Sum_probs=138.1
Q ss_pred cCCCCCchhHHHHHHHHHHhhcCCCC-CcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHH-HcCC-CcEEEEEcCC
Q 026301 93 KLPSHPTYDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWSLKD 169 (240)
Q Consensus 93 ~~p~~~~~~l~~~I~~aL~EDig~~g-DlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~-~lg~-~l~V~~~v~D 169 (240)
.--.++...++++|++||+||+| +| |+||+++++++.++++++++||+||+||+++++++|+ .+|+ +++++|+++|
T Consensus 6 ~~~~~~~~~~~~~i~~~l~ED~~-~~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~~~d 84 (289)
T PRK07896 6 ALAGLELDEARAVIRRALDEDLR-YGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVED 84 (289)
T ss_pred cccCCCHHHHHHHHHHHHHHhCC-CCCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 33455667899999999999998 67 9999999988999999999999999999999999995 6687 7899999999
Q ss_pred CCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 170 G~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
|+.+++|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 85 G~~v~~g~~i~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 157 (289)
T PRK07896 85 GARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVAGTKAKIRDTRKTLPGLRALQKYAV 157 (289)
T ss_pred CCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 56999999999999999999997
No 12
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=100.00 E-value=3.1e-43 Score=319.59 Aligned_cols=136 Identities=26% Similarity=0.372 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEE
Q 026301 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGK 181 (240)
Q Consensus 102 l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~ 181 (240)
.+..|++||+||+| |||+||.++++.+.+++++|++|++||+||++++.++|+.+| ++++|+++||+.|++|++|++
T Consensus 4 ~~~~i~~~l~ED~~-~gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~ 80 (277)
T TIGR01334 4 STGLIDNLLLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLLE 80 (277)
T ss_pred CHHHHHHHHHhcCC-CCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEE
Confidence 46779999999998 899999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCEEeecCCCCcCchhHhhhcC
Q 026301 182 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 182 i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa----~~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 81 ~~G~a~~ll~~eR~alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av 143 (277)
T TIGR01334 81 AKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAV 143 (277)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHH
Confidence 999999999999999999999999999999999998 46999999999999999999997
No 13
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=4.6e-43 Score=321.19 Aligned_cols=140 Identities=34% Similarity=0.583 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeC
Q 026301 100 YDLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~----~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~ 175 (240)
.+++++|++||+||+|. |||+|| .+++++..++++|++|++||+||+++++++|+.+|++++++|+++||+.+++
T Consensus 21 ~~~~~~i~~~l~ED~~~~~~~~gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~ 99 (296)
T PRK09016 21 LDIPAAVAQALREDLGGTVDANNDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITA 99 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecC
Confidence 36899999999999984 599999 5666788999999999999999999999999999988999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 100 G~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 166 (296)
T PRK09016 100 NQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELLAGTNTQLLDTRKTLPGLRSALKYAV 166 (296)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999998 56999999999999999999997
No 14
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=5.9e-43 Score=315.24 Aligned_cols=136 Identities=54% Similarity=0.860 Sum_probs=131.7
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 104 ~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
+.|++||+||+| +||+||..+++++..++++|++|++||+||++++.++|+.++++++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 2 AIVRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEE
Confidence 568999999998 7999999998889999999999999999999999999999988899999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 184 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 184 G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
|++++||.+||++||||||+|||||+|++||++++ +++|++||||+||+|.+|||||
T Consensus 81 G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (268)
T cd01572 81 GPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARILDTRKTTPGLRLLEKYAV 139 (268)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999994 6999999999999999999997
No 15
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=100.00 E-value=1.4e-42 Score=313.41 Aligned_cols=134 Identities=28% Similarity=0.322 Sum_probs=129.7
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 104 ~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
..|++||+||+| +||+||.++++.+..++++|++||+||+||++++.++|+.+| ++++|+++||+.|++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 2 AELERLLLEDAP-YGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred HHHHHHHHhcCC-CCCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999998 799999999988999999999999999999999999999998 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCEEeecCCCCcCchhHhhhcC
Q 026301 184 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 184 G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~----~~~IldTRKT~PGlR~leKyAV 240 (240)
|++++||++||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 79 G~~~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (272)
T cd01573 79 GPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAI 139 (272)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHH
Confidence 99999999999999999999999999999999993 6999999999999999999997
No 16
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2e-42 Score=314.33 Aligned_cols=134 Identities=43% Similarity=0.598 Sum_probs=128.9
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 104 ~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
..|++||+||+| +||+||+++++.+..++++|++|++||+||++++.++|+.++ ++++|+++||+.|++|++|++++
T Consensus 4 ~~l~~~l~ED~~-~gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 4 EYLLRFVEEDAP-FGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEE
Confidence 568999999998 799999988877899999999999999999999999999997 99999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh----CCCEEeecCCCCcCchhHhhhcC
Q 026301 184 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 184 G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa----~~~~IldTRKT~PGlR~leKyAV 240 (240)
|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 81 G~~~~ll~~Er~~ln~l~~~SGIAT~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av 141 (278)
T PRK08385 81 GNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAI 141 (278)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999998 36899999999999999999997
No 17
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=100.00 E-value=2.3e-42 Score=311.23 Aligned_cols=133 Identities=45% Similarity=0.722 Sum_probs=128.6
Q ss_pred HHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 105 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 105 ~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
+|+.||+||+| +||+||.++++.+.+++++|++|++||+||++++.++|+.++ ++++|+++||+.+++|++|++++|
T Consensus 1 ~i~~~l~ED~~-~gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 1 LLDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred ChHHHHhhCCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEE
Confidence 37899999998 799999999988999999999999999999999999999998 999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 185 RAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 185 ~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
++++||.+||++||||||+|||||+|++||++++ +++|+|||||+||+|.+|||||
T Consensus 78 ~~~~il~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~l~k~Av 135 (265)
T TIGR00078 78 PARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIADTRKTTPGLRLLEKYAV 135 (265)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChhhhHHHHHHH
Confidence 9999999999999999999999999999999994 5899999999999999999997
No 18
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.7e-42 Score=311.78 Aligned_cols=136 Identities=33% Similarity=0.566 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEE
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il 180 (240)
.++++|++||+||+| +||+|| .+++.+..++++|++|++||+||++++.++|+.+| ++++|+++||+.+++|++|+
T Consensus 2 ~~~~~i~~~l~ED~~-~~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~ 77 (273)
T PRK05848 2 EIKDFLEAALKEDLG-RGDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILM 77 (273)
T ss_pred cHHHHHHHHHHhcCC-CCCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEE
Confidence 378999999999998 799999 56666889999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 181 ~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
+++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 78 ~i~G~a~~ll~~Er~~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (273)
T PRK05848 78 EIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 9999999999999999999999999999999999999 46999999999999999999997
No 19
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=6e-42 Score=308.18 Aligned_cols=135 Identities=50% Similarity=0.752 Sum_probs=130.3
Q ss_pred HHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 104 GVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 104 ~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
+.|++||+||+| +||+||.++++++..++++|++|++||+||++++.++|+.++ +++++|+++||+.+++|++|++++
T Consensus 2 ~~i~~~l~ED~~-~gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 2 ALLDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred HHHHHHHHhcCC-CCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEE
Confidence 578999999998 799999999988999999999999999999999999999995 699999999999999999999999
Q ss_pred echhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 184 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 184 G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
|++++||.+||++||||||+|||||+|++||++++ ++++++||||+||+|.+|||||
T Consensus 80 G~~~~l~~~Er~~ln~L~~~sgIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 138 (269)
T cd01568 80 GPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIADTRKTTPGLRLLEKYAV 138 (269)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999994 6999999999999999999997
No 20
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=277.73 Aligned_cols=147 Identities=36% Similarity=0.503 Sum_probs=136.4
Q ss_pred CCCCcccCCCCCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEE
Q 026301 87 FESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (240)
Q Consensus 87 ~~~~~~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~ 166 (240)
.+++-++||.||.+.++..|...+.+|.++|||+++.+. ..+|.+.|||||++||+++|.+||++++ ++|+|+
T Consensus 4 eV~~~llPpv~~a~~~d~viwL~ed~p~~~~G~~v~ga~-----~~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW~ 76 (300)
T KOG3008|consen 4 EVLALLLPPVTLAALVDSVIWLREDCPGLNYGALVSGAG-----PSEAALWAKSDGVLAGVPFADAIFTQLN--LQVEWF 76 (300)
T ss_pred chhcccCCCCchHHHHHHHHHHHhcCCCCcccceEecCC-----hHHHHhhccCCCeeecchhHHHHHhhhc--eeEEEE
Confidence 457889999999999999887777777778899987543 3678999999999999999999999998 999999
Q ss_pred cCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC----CCEEeecCCCCcCchhHhhhcC
Q 026301 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 167 v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~----~~~IldTRKT~PGlR~leKyAV 240 (240)
.+||+++.|+-.+..++|+++.|+.+||++||+|+|+|||||.|+.++++++ +..|++||||+||||++|||++
T Consensus 77 ~KeGs~l~p~~~vaKv~GpAh~IllAERvaLN~l~R~SGIATa~~~~~~aAr~~g~~g~IagTRKTtPGLRlveKy~~ 154 (300)
T KOG3008|consen 77 LKEGSKLVPVARVAKVRGPAHCILLAERVALNTLARCSGIATAAAAAVEAARGAGWTGHIAGTRKTTPGLRLVEKYGL 154 (300)
T ss_pred ecCCCeecccceeEeecCcceeeeehHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcceecccccCCcchhhhhhhce
Confidence 9999999999999999999999999999999999999999999999999995 6899999999999999999986
No 21
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=7.2e-33 Score=257.71 Aligned_cols=131 Identities=21% Similarity=0.219 Sum_probs=123.2
Q ss_pred HHHHHHHHhhcCCCCCcccccc---cCCCcEEEEEEEEe-----CCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeC
Q 026301 104 GVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 104 ~~I~~aL~EDig~~gDlTT~~l---i~~~~~~~a~i~AK-----edGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~ 175 (240)
+.|+.+|.||+ |+|+|++.+ .. +..+++++++| ++||+||++++.++|+.++ +++ +.++||+.+.+
T Consensus 10 ~~~~~~l~~D~--Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~~ 83 (343)
T PRK08662 10 EEIKSGKTTDI--YFERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFDP 83 (343)
T ss_pred HHHHhhhHHHH--HHHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEecC
Confidence 45888999999 799999987 55 88999999999 9999999999999999887 888 89999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
|+++++++|+++++|.+||++||+|+|+|||||+|++||++++ ++.+++||||+||+|.++||||
T Consensus 84 g~~il~i~G~~~~ll~~Er~~Ln~L~~~SgIAT~t~~~v~aa~~~~v~~~~TRKt~Pg~r~l~k~Av 150 (343)
T PRK08662 84 KEPVMRIEGPYLEFGIYETALLGILAHASGIATAAARCKEAAGDKPVLSFGARHVHPAIAPMMDRAA 150 (343)
T ss_pred CceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCCHhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999996 4677789999999999999997
No 22
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.97 E-value=9.1e-31 Score=239.49 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=113.0
Q ss_pred CCCccccccc--CCCcEEEEEEEEeCC--eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHH
Q 026301 117 RGDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (240)
Q Consensus 117 ~gDlTT~~li--~~~~~~~a~i~AKed--GVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~a 192 (240)
|+|.|++.+. .++..++++|++|++ ||+||++++.++|+.++ +++. .++||+.|.+|++|++++|+++++|.+
T Consensus 7 yf~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~ 83 (302)
T cd01571 7 YFLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGEL 83 (302)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHH
Confidence 6899987653 457889999999999 99999999999999886 8885 699999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 193 ERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 193 ERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
||++||+|+|+|||||+|++||++++ ++++++||||+||+|.++||||
T Consensus 84 Er~~Ln~L~~~SgIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 133 (302)
T cd01571 84 ETAILGILARASSIATNAARVKLAAGDKPVISFGDRRDHPAIQPMDGRAA 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccCCcchhHHHHHHH
Confidence 99999999999999999999999994 6899999999999999999996
No 23
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.95 E-value=9.1e-28 Score=183.59 Aligned_cols=88 Identities=47% Similarity=0.754 Sum_probs=81.2
Q ss_pred cCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHH
Q 026301 114 AGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 193 (240)
Q Consensus 114 ig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aE 193 (240)
+| +||+||+.+++++.++++++++||+||+||++++.++|+.++ ++++|+++||+.+++|++|++++|++++||++|
T Consensus 1 i~-~gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 77 (88)
T PF02749_consen 1 IG-RGDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAE 77 (88)
T ss_dssp HT-TG-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHH
T ss_pred Cc-CCccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHH
Confidence 35 799999888999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 026301 194 RVVLNFMQRMS 204 (240)
Q Consensus 194 RvaLN~Lq~lS 204 (240)
|++||||||||
T Consensus 78 R~~LN~l~~~S 88 (88)
T PF02749_consen 78 RTALNFLQRLS 88 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999998
No 24
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.95 E-value=5.4e-27 Score=208.94 Aligned_cols=122 Identities=38% Similarity=0.566 Sum_probs=114.7
Q ss_pred Cccccccc----CCCcEEEEEEEEeCC--eeEEcHHHHHHHHHHcC-CCcEEEEEcCCCCceeCCCEEEEEEechhhhHH
Q 026301 119 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 191 (240)
Q Consensus 119 DlTT~~li----~~~~~~~a~i~AKed--GVvAGle~a~~If~~lg-~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~ 191 (240)
|+|+..+. .++.+++++|++|++ +|+||++++.++|+.++ +++.+.+.++||+.+++|+++++++|++.+++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 67777766 678899999999999 99999999999999995 569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhC----CCEEeecCCCCcCchhHhhhcC
Q 026301 192 AERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 192 aERvaLN~Lq~lSGIAT~Tr~~V~aa~----~~~IldTRKT~PGlR~leKyAV 240 (240)
+||++||+|+|+|||||.|+++++++. ++.+++||||+||+|.++||||
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~~~~~~~~~~~~~gtRk~~p~~~~~~~~A~ 133 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRKTTPGLRLLEKYAV 133 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeecCCCCcchhHHhhHHH
Confidence 999999999999999999999999984 4799999999999999999996
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=5.2e-27 Score=219.58 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=117.6
Q ss_pred chhHHHHHHHHHHhhcCCCCCccccccc--CCCcEEEEEEEEe-CCeeEEcHHHHHHHHHHcCCCcE--EEEEcCCCCce
Q 026301 99 TYDLKGVVKLALAEDAGDRGDVTCMATI--PLDMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHV 173 (240)
Q Consensus 99 ~~~l~~~I~~aL~EDig~~gDlTT~~li--~~~~~~~a~i~AK-edGVvAGle~a~~If~~lg~~l~--V~~~v~DG~~V 173 (240)
++.+++.|+...--|. |+=-|.+.+- ..+..++++|++| ++||+||++++.++|+.++.+.+ ..+.++||+.+
T Consensus 6 ~~~~~~~i~~g~~td~--YF~~t~~il~~~~~~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v 83 (352)
T PRK07188 6 TFKFDERIGEGWYSAV--YFLKTREIIEKFNPNNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDII 83 (352)
T ss_pred hcCChHHHhcCchhHH--HHHHHHHHHHHhCCCCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEe
Confidence 3455555666666666 3433443221 3367899999999 99999999999999999863322 55799999999
Q ss_pred eCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 174 ~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
.+|++|++++|++.+++.+||++||+|+|+|||||+|++||++++ ++..++||||+||+|.++|||+
T Consensus 84 ~~gepvl~i~G~~~~l~~~Et~iLnlL~~~SgIAT~a~r~v~aA~~~~~~~~gTRKt~p~~~~~~~~Aa 152 (352)
T PRK07188 84 NPFETVLEIEGPYENFGFLEGIIDGILARRTSVATNAYNVVQAANEKPVIFMGDRADHYLQQAGDGYAA 152 (352)
T ss_pred cCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhHhhHHh
Confidence 999999999999999999999999999999999999999999994 5788899999999999999996
No 26
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.09 E-value=4.9e-10 Score=108.80 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=96.9
Q ss_pred HHHHHhhcCCCCCccccccc----CCCcEEEEEEEEeC------CeeEEcHHHHHHHHHHcC------------------
Q 026301 107 KLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD------------------ 158 (240)
Q Consensus 107 ~~aL~EDig~~gDlTT~~li----~~~~~~~a~i~AKe------dGVvAGle~a~~If~~lg------------------ 158 (240)
...|.-|. | -+|..... +.+.++..+++.|. .+|+||++++...++.+.
T Consensus 8 ~~~L~TD~--Y-kltm~~~~~~~~~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~ 84 (464)
T PRK09243 8 SLALLTDL--Y-ELTMAQAYLRDGIHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDED 84 (464)
T ss_pred chHHHHHH--H-HHHHHHHHHHhCCCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHH
Confidence 34577777 3 36654333 55667888888886 369999999998888760
Q ss_pred ---------CCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEe--ecCC
Q 026301 159 ---------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATIL--ETRK 227 (240)
Q Consensus 159 ---------~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~Il--dTRK 227 (240)
...+| +.++||+.+.+|+++++|+|+..+....|+.+||+|+|.|+|||+++++++++.+.++. +||.
T Consensus 85 f~~~L~~~~f~~~I-~a~pEG~~v~~~epvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~r~~~~a~~~~v~dFG~Rr 163 (464)
T PRK09243 85 FLDYLRNFRFTGDV-RAVPEGELVFPNEPLLRVEGPLAEAQLLETLLLNIINFQTLIATKAARIVSAAGGRPLLEFGSRR 163 (464)
T ss_pred HHHHHHhCCCCCeE-EEEeCCccccCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEeccccc
Confidence 02366 47789999999999999999999999999999999999999999999999998765655 5887
Q ss_pred CCcC
Q 026301 228 TAPT 231 (240)
Q Consensus 228 T~PG 231 (240)
..+-
T Consensus 164 ~~~~ 167 (464)
T PRK09243 164 AQGP 167 (464)
T ss_pred CCch
Confidence 7753
No 27
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.03 E-value=2.5e-09 Score=99.46 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=86.4
Q ss_pred CCcEEEEEEEEeC------CeeEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCcee
Q 026301 128 LDMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVH 174 (240)
Q Consensus 128 ~~~~~~a~i~AKe------dGVvAGle~a~~If~~lg---------------------------~~l~V~~~v~DG~~V~ 174 (240)
++.+++.+++.|. -+|++|++.+.+.++.+. ..+++ +.++||+.+.
T Consensus 21 ~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~ 99 (327)
T cd01570 21 HNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVF 99 (327)
T ss_pred CCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceec
Confidence 4667888888887 266899999988777550 12555 3689999999
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEe--ecCCCCcC
Q 026301 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATIL--ETRKTAPT 231 (240)
Q Consensus 175 ~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~Il--dTRKT~PG 231 (240)
+|+++++|+|+.......|+.+||++++.|+|||+++++++++.+.++. +||...+-
T Consensus 100 ~~~pvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~~~~~~~~~~~~~dFG~Rr~~s~ 158 (327)
T cd01570 100 PNEPLLTVEGPLIEAQLLETLLLNLINFQTLIATKAARVRLAAGGRPLLEFGLRRAQGP 158 (327)
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcc
Confidence 9999999999999999999999999999999999999999998766666 58877654
No 28
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=98.77 E-value=5.8e-08 Score=90.10 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCcEEEEEEEEeCC------eeEEcHHHHHHHHHHcC-------------------------CCcEEEE-EcCCCCceeC
Q 026301 128 LDMEVEAHFLAKED------GIIAGIALAEMIFHEVD-------------------------PSLKVEW-SLKDGDHVHK 175 (240)
Q Consensus 128 ~~~~~~a~i~AKed------GVvAGle~a~~If~~lg-------------------------~~l~V~~-~v~DG~~V~~ 175 (240)
++..+..+++.|.. .+++|++.+.+.+..+- ....+++ .++||+.+.+
T Consensus 20 ~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~a~~eG~~~~~ 99 (343)
T cd01567 20 PNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEIYALPEGTVVFP 99 (343)
T ss_pred CCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEEEEeCCcccccC
Confidence 35678888999974 79999999998876541 1223443 7899999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--------------CEEeecCCCCcC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP--------------ATILETRKTAPT 231 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~--------------~~IldTRKT~PG 231 (240)
++++++|+|+..+....|+.+||+++++|++||.+++.++++.. +...+||++.|.
T Consensus 100 ~~~~i~IeG~~~~~~~~Et~lL~i~~~~t~~at~~~~~~~~a~~~~~~~~~~~~~~~~~~dFGtRr~~s~ 169 (343)
T cd01567 100 KEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLAAGGLLETKDNLEELGFKLHDFGTRRRHSP 169 (343)
T ss_pred CCeEEEEEechHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccCCCeEEecCCCCcCCh
Confidence 99999999999999999999999999999999999999998843 455689999984
No 29
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=98.48 E-value=1.4e-06 Score=84.73 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=84.3
Q ss_pred CcEEEEEEEEeC------CeeEEcHHHHHHHHHHcC---------------------------CCcEEEEEcCCCCceeC
Q 026301 129 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 129 ~~~~~a~i~AKe------dGVvAGle~a~~If~~lg---------------------------~~l~V~~~v~DG~~V~~ 175 (240)
+.+++.+++.|. ..|++|++.+...++.+. ..++|. .++||+.|.+
T Consensus 22 ~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~ 100 (443)
T TIGR01513 22 NQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVR-ALPEGSLVFP 100 (443)
T ss_pred CceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEE-EecCCccccC
Confidence 345888888886 347799999988777630 124443 5899999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEe--ecCCCCc
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATIL--ETRKTAP 230 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~Il--dTRKT~P 230 (240)
++++++|+|+..+....|..+||++.+.|.|||++++++.++.+.++. +||...+
T Consensus 101 ~ep~l~Iegp~~~~~llEt~lL~~i~~~s~iATka~r~~~aa~~~~l~dFG~Rr~~~ 157 (443)
T TIGR01513 101 NEPLLQVEGPLIEAQLLETLVLNIINFQTLIATKAARIVLAAGGKPLLEFGLRRAQG 157 (443)
T ss_pred CcEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCc
Confidence 999999999999999999999999999999999999999998776666 5887776
No 30
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=98.46 E-value=7.8e-07 Score=85.46 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHhhcCCCCCccccccc----CCCcEEEEEEEEeCC------eeEEcHHHHHHHHHHcCCC---------
Q 026301 100 YDLKGVVKLALAEDAGDRGDVTCMATI----PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS--------- 160 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~gDlTT~~li----~~~~~~~a~i~AKed------GVvAGle~a~~If~~lg~~--------- 160 (240)
...+..++..|.-|. |. +|....+ +.+..+..+++.|.+ .++||++++.+.++.+.-.
T Consensus 5 ~~~~~~i~~~L~TD~--Yk-ltm~q~~~~~~~~~~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~ 81 (405)
T COG1488 5 FKSEPDIKSLLDTDL--YK-LTMLQAYLHDGPNNVTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRS 81 (405)
T ss_pred cchhHHHhhhhHhHH--HH-HHHHHHHHhhCCCccEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhh
Confidence 345677888888998 43 5554322 333688999999975 7899999999999983111
Q ss_pred --------------cEEEE-EcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh-CCCEEe-
Q 026301 161 --------------LKVEW-SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA-HPATIL- 223 (240)
Q Consensus 161 --------------l~V~~-~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa-~~~~Il- 223 (240)
++++. .+++|+.+.+.+++++++|+..+....|..+||++.+.|.|||+++++++++ .+.++.
T Consensus 82 ~~~~~~~fl~~L~~f~~~i~a~~eg~~~~~~ep~l~i~G~~~e~~l~Et~lL~ii~~~~~iatka~r~~~~a~~~~~v~d 161 (405)
T COG1488 82 LPFFKPDFLNYLRRFPLDIYAVPEGTVVFPNEPVLRIEGPYLETILLETPLLGIINEASLIATKAARVKDAAGKGFPVLD 161 (405)
T ss_pred cccccHHHHHHHhhCCCceEEEeccccccCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Confidence 33333 7899999999999999999999999999999999999999999999999999 577766
Q ss_pred -ecCCCCcC
Q 026301 224 -ETRKTAPT 231 (240)
Q Consensus 224 -dTRKT~PG 231 (240)
+||...+-
T Consensus 162 FGtRr~~~~ 170 (405)
T COG1488 162 FGTRRRHSA 170 (405)
T ss_pred ccCcccccc
Confidence 58988775
No 31
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=98.42 E-value=2.2e-06 Score=83.31 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=82.2
Q ss_pred cEEEEEEEEeC------CeeEEcHHHHHHHHHHcCC---------------------------CcEEEEEcCCCCceeCC
Q 026301 130 MEVEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHKG 176 (240)
Q Consensus 130 ~~~~a~i~AKe------dGVvAGle~a~~If~~lg~---------------------------~l~V~~~v~DG~~V~~G 176 (240)
.+++.+++.|. ..|+||++.+.+.++.+.- ..+|. .++||+.|.++
T Consensus 26 ~~~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~~ 104 (443)
T PRK12484 26 APATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDVR-AVPEGTVVFPN 104 (443)
T ss_pred CeEEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceEE-EEeCCeeecCC
Confidence 45888888886 4579999999888886520 01443 67899999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEe--ecCCCC
Q 026301 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATIL--ETRKTA 229 (240)
Q Consensus 177 ~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~Il--dTRKT~ 229 (240)
+++++|+|+..+....|..+||++.+.|.|||++++++.++.+..+. +||...
T Consensus 105 ep~l~Iegp~~e~~llET~lL~il~~~s~iATka~ri~~aa~~~~l~dFG~Rr~~ 159 (443)
T PRK12484 105 EPLLEVTAPLIEAQLVETFLLNQINHQSLIASKAARCVLAAAGRPVVDFGARRAH 159 (443)
T ss_pred cEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCC
Confidence 99999999999999999999999999999999999999998766666 477654
No 32
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=97.83 E-value=0.0001 Score=72.24 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCcEEEE-EcCCCCceeCCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 026301 148 ALAEMIFHEVDPSLKVEW-SLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 218 (240)
Q Consensus 148 e~a~~If~~lg~~l~V~~-~v~DG~~V~~G~~Il~i~G~a~~IL----~aERvaLN~Lq~lSGIAT~Tr~~V~aa~ 218 (240)
+....+++..+..+.+++ .++||+.|.+++++++|+|+..+.. ..|..+||++.|.|.|||.++++++++.
T Consensus 83 ~~~~~~~~~~~g~~p~~I~AvpEGtvv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 158 (463)
T PRK09198 83 AGWRRIVDKYGGYLPLRIKAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQLIR 158 (463)
T ss_pred HHHHHHHHhcCCCCceEEEEecCCceecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667765533344444 8999999999999999999999988 6999999999999999999999999874
No 33
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=97.60 E-value=0.00035 Score=67.70 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCcEEEE-EcCCCCceeCCCEEEEEEechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 026301 148 ALAEMIFHEVDPSLKVEW-SLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADLAH 218 (240)
Q Consensus 148 e~a~~If~~lg~~l~V~~-~v~DG~~V~~G~~Il~i~G~a~~I----L~aERvaLN~Lq~lSGIAT~Tr~~V~aa~ 218 (240)
+..+.+.+..+..+.+++ .++||+.|.+++++++|+|+..+. --.|..+||.+.+.|.|||.++++++++.
T Consensus 81 ~~~~~i~~l~~~~lp~~I~AvpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~~~~ 156 (407)
T cd01569 81 DGWRHILELHDGYLPIEIRAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKKILR 156 (407)
T ss_pred HHHHHHHHHcCCCCceEEEEecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332334333 899999999999999999999988 88999999999999999999999999983
No 34
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=97.36 E-value=0.00086 Score=66.08 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=51.1
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEechhhhH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 218 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL----~aERvaLN~Lq~lSGIAT~Tr~~V~aa~ 218 (240)
++| +.++||+.|.+++++++|+|+..+.. ..|..+||.+.+.|.|||.++++++++.
T Consensus 101 ~~I-~AvpEGtvvf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 161 (470)
T PHA02594 101 IEV-RAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKKILK 161 (470)
T ss_pred ceE-EEecCCceecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 38999999999999999999987554 7999999999999999999999999973
No 35
>PLN02885 nicotinate phosphoribosyltransferase
Probab=97.18 E-value=0.0029 Score=63.44 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=56.7
Q ss_pred EcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CCEEe--ecCCC
Q 026301 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH-PATIL--ETRKT 228 (240)
Q Consensus 166 ~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~-~~~Il--dTRKT 228 (240)
.++||+.|.+++++++|+|+.......|..+||++.+.|.|||.+++++.++. +..++ +||..
T Consensus 105 A~~EG~lvf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~~~~~v~eFG~RRa 170 (545)
T PLN02885 105 AIPEGSVVFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLLEFGLRRA 170 (545)
T ss_pred ecCCCcEecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCccC
Confidence 47999999999999999999999999999999999999999999999999984 45555 57765
No 36
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=95.76 E-value=0.041 Score=53.02 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCCCceeC----CCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCEEe
Q 026301 168 KDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATIL 223 (240)
Q Consensus 168 ~DG~~V~~----G~~Il~i~G~a~~IL~aERvaLN~Lq~l---------------SGIAT~Tr~~V~aa-----~~~~Il 223 (240)
++|..+.+ |+++++|+|+..+....|-.+||+++++ +=|||++++++.++ .+.+++
T Consensus 88 ~e~~~v~~~~~~~~~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~~a~~~~~~~~~~~ 167 (377)
T cd01401 88 PEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLEEAKRRDLNGFRFS 167 (377)
T ss_pred cCeeEEecCCCCCeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhhcccCCCCeEE
Confidence 57778876 9999999999999999999999999984 45999999999988 566666
Q ss_pred --ecCCCCc
Q 026301 224 --ETRKTAP 230 (240)
Q Consensus 224 --dTRKT~P 230 (240)
+||...+
T Consensus 168 eFGtRRr~~ 176 (377)
T cd01401 168 DFGTRRRFS 176 (377)
T ss_pred EecccccCC
Confidence 5888776
No 37
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=94.30 E-value=0.27 Score=47.80 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHH-----HhH----------HHHHHHHHHHH--hCCCEEe--ecCCCC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQR-----MSG----------IATLTRAMADL--AHPATIL--ETRKTA 229 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~-----lSG----------IAT~Tr~~V~a--a~~~~Il--dTRKT~ 229 (240)
|+++++|+|+..+....|..+||++++ .++ +||++.+++++ +.+..++ +||...
T Consensus 106 ~~~~i~I~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~~~a~~~~~~~~~eFGtRR~~ 178 (400)
T PRK05321 106 GQLDIRIEGPWLETILWEVPLLAIISELYFRARSPEVLYAQAKRRLWEKIELLKALPDLSGFKIADFGTRRRF 178 (400)
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHhccccCCCeEEEecccccc
Confidence 899999999999999999999999998 544 89999999776 2235555 587665
No 38
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=91.02 E-value=0.22 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.9
Q ss_pred EEEEcCCCCceeCCCEEEEEEechhh
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGRAHS 188 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~a~~ 188 (240)
.++++++|+.|++|++|+++.-+...
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHHHH
Confidence 45689999999999999999876443
No 39
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=90.21 E-value=1.2 Score=43.46 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-------CCEEe--ecCCC
Q 026301 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-------PATIL--ETRKT 228 (240)
Q Consensus 175 ~G~~Il~i~G~a~~IL~aERvaLN~Lq~l---------------SGIAT~Tr~~V~aa~-------~~~Il--dTRKT 228 (240)
.|+++++|+|+..+-...|-.+||+++++ +-|||++.+++.++. +.++. +||..
T Consensus 101 eg~~~i~i~Gp~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~~~a~~~~~~~~~~~~~eFGtRRr 178 (394)
T TIGR01514 101 KGKLDIRISGSWRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLKAEIAAETMFENGFRFSEFGTRRR 178 (394)
T ss_pred CCcEEEEEEeehHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhcccccCCCCeeEeeccccc
Confidence 47999999999999999999999999983 669999999998872 45665 47755
No 40
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.73 E-value=1.4 Score=33.23 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=28.8
Q ss_pred cCCCcEEEEEcCCCCceeCCCEEEEEEechhh-hHHHHHH
Q 026301 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS-IVIAERV 195 (240)
Q Consensus 157 lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~-IL~aERv 195 (240)
.|+..=+.++++=||.|++||+++++..+-+. +-.++..
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~~ 67 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVER 67 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHHH
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHHH
Confidence 35667788999999999999999999999887 4444333
No 41
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=86.00 E-value=0.73 Score=33.85 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++|+.|++|++|++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 46999999999999999999753
No 42
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=84.33 E-value=1.3 Score=32.21 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEech
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
-=.+|++++||.|++|+++++++-.-
T Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 12 SVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEecc
Confidence 34678999999999999999887653
No 43
>PRK06748 hypothetical protein; Validated
Probab=82.45 E-value=1.7 Score=33.73 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEe
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
.-++|++++||.|++|++|++++-
T Consensus 14 ~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 14 KVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 446899999999999999999987
No 44
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=80.40 E-value=17 Score=36.69 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=49.6
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCceeCCCEEEEEEechhhhHHH
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~lg----~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~a 192 (240)
..+-+..+.|.++|.+..++. +.++.+.+| ++.-++++++-||.|++||++++++.+....+..
T Consensus 409 ~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~l~~ 478 (493)
T TIGR02645 409 AGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGELDY 478 (493)
T ss_pred CCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHHHHH
Confidence 345688899999999999653 344555554 5666888999999999999999999776655544
No 45
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=77.54 E-value=19 Score=34.35 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=41.1
Q ss_pred EEEEeCCeeEEcHHH--HHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 135 HFLAKEDGIIAGIAL--AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 135 ~i~AKedGVvAGle~--a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
.+.+++.|.+..++. ..++.+..| +.+++.+.=|+.|.+|++++++.
T Consensus 197 ~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 197 PIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred EEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 499999999999866 556666666 99999999999999999999995
No 46
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=76.24 E-value=3.4 Score=29.60 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=20.1
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
=+.|.++.|+.|++|+++++++-.
T Consensus 12 i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 12 VWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEEeCCCCEECCCCEEEEEEcC
Confidence 356889999999999999998754
No 47
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=75.79 E-value=33 Score=34.06 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=45.7
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCceeCCCEEEEEEechhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~lg-----------~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~ 188 (240)
..+.+..+.|.++|.+..++- +-.+...+| +..-+.++++-||.|++||++++++.+...
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~ 403 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANREN 403 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHH
Confidence 455688899999999998653 333444443 456688999999999999999999955443
No 48
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=75.78 E-value=3 Score=37.32 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=12.5
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++|.+++||.|++||+|+++++.
T Consensus 20 ~~~~~~~g~~v~~~~~~~~~e~~ 42 (371)
T PRK14875 20 AGWLVQEGDEVEKGDELLDVETD 42 (371)
T ss_pred EEEEcCCCCEeCCCCEEEEEEec
Confidence 44555555555555555555543
No 49
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=75.26 E-value=2.7 Score=40.74 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++|+++.||.|++||+|++|+-+
T Consensus 20 ~~W~~k~GD~V~~gd~L~eVeTD 42 (404)
T COG0508 20 VEWLKKVGDKVKEGDVLVEVETD 42 (404)
T ss_pred EEEecCCCCeecCCCeeEEEEcC
Confidence 78999999999999999999865
No 50
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=73.50 E-value=18 Score=35.92 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=46.2
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHH-----------HcCCCcEEEEEcCCCCceeCCCEEEEEEechhhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFH-----------EVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 189 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~-----------~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~I 189 (240)
..+.+.++.|+++|.+.-++- +-.+.. ..|+..-++++++-||.|++||+++++..+-...
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~~~ 409 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDEER 409 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCHHH
Confidence 345688899999999988653 233342 2346777899999999999999999999655443
No 51
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=73.43 E-value=35 Score=34.51 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=48.5
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCceeCCCEEEEEEechhhhHH
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 191 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~lg----~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~ 191 (240)
..+-+..+.|.++|.+..++. +-.+...+| ++.-++++++=||.|++||++++++.+-...+.
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~~l~ 478 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEWRLE 478 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHHHHH
Confidence 455688899999999999653 334455544 566788899999999999999999976655443
No 52
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=73.27 E-value=4.3 Score=27.61 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EE-EEEcCCCCceeCCCEEEEEEe
Q 026301 162 KV-EWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 162 ~V-~~~v~DG~~V~~G~~Il~i~G 184 (240)
.+ +|.++.|+.|++|+.+++++.
T Consensus 9 ~v~~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 9 TVVKVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 45 589999999999999999975
No 53
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=72.69 E-value=11 Score=36.84 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.7
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHH-----------cCCCcEEEEEcCCCCceeCCCEEEEEEechhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~-----------lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~ 188 (240)
..+.+.++.|.++|.+..++- +-.+... .|+..-+.++++-||.|++||++++++.+-..
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~ 401 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPI 401 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHh
Confidence 455678899999999998553 2233332 35667789999999999999999999966443
No 54
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=72.04 E-value=3.1 Score=41.51 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.3
Q ss_pred EEEEEcCCCCceeCCCEEEEEEech
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
=+.|.+++||.+++||+|++|+=+=
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 4789999999999999999998653
No 55
>PRK04350 thymidine phosphorylase; Provisional
Probab=71.92 E-value=26 Score=35.35 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=49.2
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHcC----CCcEEEEEcCCCCceeCCCEEEEEEechhhhHHH
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~lg----~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~a 192 (240)
..+-+..+.|.++|.+..++. +.++...+| ++.-++++++=||.|++||++++++.+-+..+..
T Consensus 401 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~l~~ 470 (490)
T PRK04350 401 LGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGELDY 470 (490)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHHHHH
Confidence 445678899999999999653 344555544 5667889999999999999999999766655443
No 56
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=69.79 E-value=21 Score=35.51 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=48.8
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHcC-----------CCcEEEEEcCCCCceeCCCEEEEEEechhhhHHH
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~lg-----------~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~a 192 (240)
..+-++.+.|.++|++..++. .-.+...+| ++.-+..+++-|+.|++|++|+++.-..+..+..
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 456789999999999998653 233344443 3456788999999999999999999976666544
No 57
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=66.21 E-value=6.5 Score=32.64 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.6
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
.+++.||.|++|++++.++
T Consensus 84 ~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 84 PFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EeeccCCEEcCCCEEEEEE
Confidence 5788999999999999886
No 58
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=65.75 E-value=16 Score=24.71 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=25.2
Q ss_pred EEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEE
Q 026301 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 132 ~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i 182 (240)
....+.++.+|++. .+.+.+|+.|++|+.++++
T Consensus 35 ~~~~i~ap~~G~v~------------------~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 35 MENEVTAPVAGVVK------------------EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEEEeCCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 45567777777766 3567899999999999874
No 59
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=65.06 E-value=4 Score=35.86 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=16.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEEech
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
--+++++||+.|++|++++++.-.-
T Consensus 12 V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 12 VTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEEEccCcCEEeCCCEEEEEEeec
Confidence 3456899999999999999998654
No 60
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=64.67 E-value=35 Score=33.91 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=46.7
Q ss_pred CcEEEEEEEEeCCeeEEcHHHHH--HHH-----------HHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhH
Q 026301 129 DMEVEAHFLAKEDGIIAGIALAE--MIF-----------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 190 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~a~--~If-----------~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL 190 (240)
..+.+..+.|+++|.+..++-.. .+. ...|+..-++++++=||.|++||+++++..+-...+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~ 409 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADESDA 409 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCHHHH
Confidence 34568889999999999865432 222 123467778999999999999999999996655443
No 61
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=63.36 E-value=12 Score=26.53 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-.+|.+.+|+.+++|+.+++++..
T Consensus 15 ~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 15 TVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEEcCCcCEECCCCEEEEEEeC
Confidence 3456899999999999999998764
No 62
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=61.50 E-value=8.4 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.7
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
+.+++|+.|+.|++|+.++
T Consensus 101 i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 101 IFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred EEeCCCCEecCCCEEEEEc
Confidence 4556666666666666664
No 63
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=60.84 E-value=9.5 Score=27.29 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.3
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
.++++.+|+.|.+|+.|++++
T Consensus 50 ~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 50 KKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEecCCCEECCCCEEEEEC
Confidence 456899999999999999874
No 64
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=59.92 E-value=9.9 Score=32.36 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+|++++||.|++|+.++.++..
T Consensus 97 ~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 97 RILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEeCCCCEEcCCCEEEEEeec
Confidence 6899999999999999998754
No 65
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=57.80 E-value=11 Score=33.38 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.0
Q ss_pred EEEEEcCCCCceeCCCEEEEEEechh
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGRAH 187 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~a~ 187 (240)
.+++++++|+.|++|++|+++.-+..
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~~~ 56 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSSDL 56 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-HHH
T ss_pred EEEEEeCCcCEECCCCEEEEEEChhh
Confidence 44889999999999999999987643
No 66
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.41 E-value=30 Score=31.36 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEcCCCCceeCCCEEEEEEech
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
.++++++|+.|++|++|+++....
T Consensus 28 ~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 28 KKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEEEccCCCEecCCcEEEEecCcH
Confidence 456899999999999999999864
No 67
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=56.84 E-value=6.1 Score=38.54 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=48.9
Q ss_pred EEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 026301 165 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 217 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa 217 (240)
-.+.+|..+-++-++++|+|+.......|-..||++.++|=+||-+.+..+..
T Consensus 99 ~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLvs~a~~~~~da~~~r~~~ 151 (420)
T KOG2511|consen 99 EAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ 151 (420)
T ss_pred hhcccCceeccCCceEEEecchhheeeeechHHHHhhhHHheeeccccchhcc
Confidence 37889999999999999999999999999999999999999999888877765
No 68
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=56.31 E-value=12 Score=30.83 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++.++++||.|++|+.|+++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 3667899999999999999985
No 69
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=56.01 E-value=12 Score=37.42 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.4
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++.+++||.|+.|++|+.++..
T Consensus 147 ~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 147 EFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred EEEeCCCCEecCCCEEEEeccC
Confidence 4566777777777777777543
No 70
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=51.90 E-value=18 Score=30.13 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.7
Q ss_pred EEEcCCCCceeCCCEEEEEEe
Q 026301 164 EWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G 184 (240)
+|++.+|+.|++|++|+.++-
T Consensus 74 ~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 74 KVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEeCCCCEECCCCEEEEEec
Confidence 478889999999999988863
No 71
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=51.81 E-value=36 Score=26.05 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=26.4
Q ss_pred eEEcH-HHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 143 IIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 143 VvAGl-e~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+--|+ +.+.+. +| .+..-++.+.|+.|++|++++++++.
T Consensus 16 ~~lGlt~~~~~~---lG-~i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 16 ATVGITDYAQDL---LG-DIVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred EEEeeCHHHHhh---CC-CEEEEEecCCCCEEeCCCEEEEEEEc
Confidence 44454 444444 44 33444567779999999999999976
No 72
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=51.74 E-value=15 Score=30.24 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.1
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-+++++++||.|++|++|+++.
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 3667899999999999999874
No 73
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=51.59 E-value=16 Score=35.57 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.2
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
+.+++|+.|+.|++++++.
T Consensus 57 i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 57 ILFKEGDTVESGQVLAILE 75 (403)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 3566777777777777775
No 74
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.80 E-value=12 Score=34.53 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEechh
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGRAH 187 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~a~ 187 (240)
.-.++++++|+.|++|++++++.-...
T Consensus 53 ~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 53 IVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEEEEeCCCCEecCCCeEEEEccchh
Confidence 344789999999999999999987754
No 75
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=49.07 E-value=14 Score=33.34 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++.-+-
T Consensus 55 ~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 55 EVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred EEEeCCCCEEcCCCEEEEECchH
Confidence 45889999999999999998654
No 76
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=48.56 E-value=16 Score=34.69 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++.-+-
T Consensus 74 ~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 74 KVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEcCCCCEECCCCEEEEECcHH
Confidence 45789999999999999998653
No 77
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=48.34 E-value=18 Score=31.35 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=18.9
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.++++||.|++|+.|+++.
T Consensus 104 F~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 104 FKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred eEEEecCCCEEeCCCEEEEEc
Confidence 667899999999999999884
No 78
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=47.85 E-value=18 Score=35.17 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=15.0
Q ss_pred EEcCCCCceeCCCEEEEEEec
Q 026301 165 WSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+.+++|+.|..|++|++++-.
T Consensus 59 i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 59 ILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred EEeCCCCEeCCCCEEEEEecC
Confidence 456777777788888777643
No 79
>PRK07051 hypothetical protein; Validated
Probab=47.64 E-value=24 Score=26.19 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=17.6
Q ss_pred EEEcCCCCceeCCCEEEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.+++|+.|++|++|+++.
T Consensus 60 ~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 60 EFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEcCCcCEECCCCEEEEEe
Confidence 46789999999999999874
No 80
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.31 E-value=18 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEEcCCCCceeCCCEEEEEEech
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
.++++++||.|++|++|+++..+.
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChHH
Confidence 456899999999999999998873
No 81
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=46.21 E-value=16 Score=33.58 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEcCCCCceeCCCEEEEEEech
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
.++++++|+.|++|++|+++.-+-
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcHH
Confidence 456899999999999999998754
No 82
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.43 E-value=16 Score=35.27 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEech
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
+.--+++++|||.|++|++++++.-..
T Consensus 68 G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 68 NAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred cEEEEEEcCCCCEecCCCEEEEECchH
Confidence 454567999999999999999997653
No 83
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=45.21 E-value=17 Score=30.28 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=16.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++++++.||.|++|++|+++.
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 3677899999999999999984
No 84
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=44.72 E-value=17 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.7
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.|+++.||.|++|++|+.|+..
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 4799999999999999999864
No 85
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=43.10 E-value=78 Score=29.85 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred CCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 128 LDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 128 ~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-.++++.++|..+|++.==.+...-++..+ .+.+ .-++++..|++|+.|+.++=-
T Consensus 75 ~~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~~-at~~~~~~v~~g~~vA~~rii 130 (312)
T cd03522 75 EPAEGRVNLFAERAGLLKVDVEALDALNAID-AITL-ATLHNNTPVEAGQMVATVKII 130 (312)
T ss_pred CCccceEEEEECCCeeEEEcHHHHHhhhCCC-CEEE-EEcCCCeEeCCCCEEEEEEEe
Confidence 3467999999999999998777777788887 3433 479999999999999887644
No 86
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=42.48 E-value=25 Score=32.38 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.++++++|+.|++|++|+++.-.
T Consensus 60 ~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 60 VELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEEeCCCCEEcCCCEEEEECcH
Confidence 34589999999999999999965
No 87
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=42.11 E-value=24 Score=30.53 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.++++||.|++||.++++-
T Consensus 89 F~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 89 FESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred eEEEeeCCCEEccCCEEEEEC
Confidence 567899999999999999874
No 88
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=42.07 E-value=29 Score=28.74 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCceeCCCEEEEEE
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
.-.++++++|+.|..|++|++++
T Consensus 117 ~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 117 VVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred EEEEEEecCCCccCCCCEEEEec
Confidence 44566889999999999999986
No 89
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.64 E-value=53 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++..+.
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCHH
Confidence 35789999999999999998764
No 90
>PRK07051 hypothetical protein; Validated
Probab=41.61 E-value=25 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.5
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+++++|+.|++|+.+++++..
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEc
Confidence 3678999999999999999885
No 91
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=41.47 E-value=22 Score=36.36 Aligned_cols=22 Identities=27% Similarity=0.219 Sum_probs=18.0
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++|++++||.|++|++|++++
T Consensus 221 v~~w~v~~Gd~V~~g~~l~~ve 242 (633)
T PRK11854 221 VTEVMVKVGDKVEAEQSLITVE 242 (633)
T ss_pred EEEEEecCCCeecCCCceEEEE
Confidence 3788999999998888888754
No 92
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=40.69 E-value=22 Score=30.10 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeCCCEEEEEEe
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G 184 (240)
-.|++..||.|++|++|+.++-
T Consensus 99 ~~~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 99 AKPFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred CCccccCCCEeCCCCEEEEEEe
Confidence 3468899999999999998874
No 93
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=39.52 E-value=27 Score=25.49 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=28.3
Q ss_pred CcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEE
Q 026301 129 DMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i 182 (240)
..+....+.|..+|++. ++++++|+.|..|++|+++
T Consensus 39 t~K~~~~v~a~~~G~i~------------------~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 39 TMKMEMEVEAPVSGIIK------------------EILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSSEEEEEEBSSSEEEE------------------EESSTTTEEEETTSEEEEE
T ss_pred cCccceEEECCCCEEEE------------------EEEECCCCEECCCCEEEEC
Confidence 34567788888888653 3478899999999999975
No 94
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=39.03 E-value=26 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=10.3
Q ss_pred EEEEcCCCCceeCCCEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i 182 (240)
++|+++.||.|++|+.|+++
T Consensus 133 ~~w~v~~Gd~V~~g~~l~~v 152 (546)
T TIGR01348 133 IEVLVKVGDTVSADQSLITL 152 (546)
T ss_pred eEEeeCCCCcccCCCeeEEE
Confidence 44555555555555554444
No 95
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=38.93 E-value=27 Score=35.47 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=11.6
Q ss_pred EcCCCC-ceeCCCEEEEEEe
Q 026301 166 SLKDGD-HVHKGLQFGKVSG 184 (240)
Q Consensus 166 ~v~DG~-~V~~G~~Il~i~G 184 (240)
.+++|+ .++.|++|+.+..
T Consensus 170 ~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 170 VKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred EecCCCcccCCCCEEEEEcc
Confidence 455664 5677777766643
No 96
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=38.90 E-value=30 Score=35.26 Aligned_cols=19 Identities=21% Similarity=0.365 Sum_probs=14.0
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
+.+++|+.++.|++|+.+.
T Consensus 192 i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 192 ILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred EecCCCCEecCCCEEEEEe
Confidence 4567777777777777775
No 97
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=37.99 E-value=30 Score=32.92 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.6
Q ss_pred EEEcCCCCceeCCCEEEEEEechh
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRAH 187 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a~ 187 (240)
+.++++|+.|++|++|+++.-+..
T Consensus 71 ~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 71 DLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred EEECCCcCEECCCCEEEEECcHHH
Confidence 457899999999999999987644
No 98
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=37.38 E-value=32 Score=34.47 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.8
Q ss_pred cCCCCceeCCCEEEEEE
Q 026301 167 LKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 167 v~DG~~V~~G~~Il~i~ 183 (240)
+++|+.|..|++|+++.
T Consensus 177 ~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 177 VKVGDKVSVGSLLVVIE 193 (547)
T ss_pred cCCCCEecCCCEEEEEe
Confidence 45555556666666654
No 99
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=36.96 E-value=27 Score=32.41 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCceeCCCEEEE------------EEechhhhHHHHH
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAER 194 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~------------i~G~a~~IL~aER 194 (240)
+++-+..+++||.|++|++|++ ++|...+|-++||
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFEDKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEeeCCCCCcEEecCCCeEEEEEecCCC
Confidence 3777888999999999998876 4677777777776
No 100
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.90 E-value=33 Score=35.01 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
+.-++|.+++||.|++|++|+.++-
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEe
Confidence 3456899999999999999999874
No 101
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=36.66 E-value=28 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.6
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-.|+++.|+.|++|++|+.++..
T Consensus 98 ~~~~v~~Gd~V~~Gq~l~~iEam 120 (155)
T PRK06302 98 APPFVEVGDTVKEGQTLCIIEAM 120 (155)
T ss_pred CCcccCCCCEeCCCCEEEEEEec
Confidence 44689999999999999998863
No 102
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.62 E-value=35 Score=35.08 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+.-++|+++.||.|++|++|++++..
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 44568999999999999999999864
No 103
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=36.25 E-value=77 Score=29.73 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|+++.-.
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEECCCCCEEcCCCEEEEECCH
Confidence 3578999999999999999544
No 104
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=34.40 E-value=40 Score=32.87 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=13.9
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
+++++|+.++.|++++++.
T Consensus 55 i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 55 INFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 4667777777788877774
No 105
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=34.37 E-value=49 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred EEEcCCCCceeCCCEEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i 182 (240)
++++.+|+.++.|++|+++
T Consensus 52 ~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 52 KVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred EEEeCCCCEECCCCEEEEE
Confidence 4568999999999999986
No 106
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=34.08 E-value=36 Score=31.70 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.3
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|+++.-.
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 4579999999999999999754
No 107
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=33.53 E-value=62 Score=21.08 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=18.8
Q ss_pred EEEEcCCCCceeCCCEEEEEEe
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G 184 (240)
..|++.+|+.+.+|+.++.++-
T Consensus 18 ~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 18 VEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEECCCCEEcCCCEEEEEEe
Confidence 4678999999999999988854
No 108
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=33.13 E-value=45 Score=31.92 Aligned_cols=19 Identities=42% Similarity=0.805 Sum_probs=9.3
Q ss_pred EEEcCCCCceeCCCEEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i 182 (240)
+|++++|+.|++|++++++
T Consensus 21 ~w~v~~Gd~V~~g~~l~~v 39 (411)
T PRK11856 21 EWLVKVGDTVKEGQPLAEV 39 (411)
T ss_pred EEEeCCcCEeCCCCEEEEE
Confidence 4445555555555544444
No 109
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=32.99 E-value=1.6e+02 Score=27.84 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEcCCCCceeCCCEEEEEEec
Q 026301 165 WSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+.+++|+.|++|++|+++.-.
T Consensus 79 v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 79 RNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEcCCCCEecCCCEEEEECCH
Confidence 478899999999999999754
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=32.21 E-value=43 Score=32.18 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.8
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++.-+.
T Consensus 100 ~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 100 ALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EEECCCCCEecCCCEEEEECcHH
Confidence 45789999999999999997653
No 111
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=32.20 E-value=35 Score=27.04 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
...+..++.||.|+.|+.|++..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 4556689999999999999999874
No 112
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=31.85 E-value=1.2e+02 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEe
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
.-.++++++|+.|++|++++++.-
T Consensus 76 ~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 76 IVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred EEEEEEccCCCeecCCCEEEEECC
Confidence 556679999999999999999997
No 113
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=30.70 E-value=79 Score=30.36 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.1
Q ss_pred EE-cCCCCceeCCCEEEEEEech
Q 026301 165 WS-LKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 165 ~~-v~DG~~V~~G~~Il~i~G~a 186 (240)
++ +..||.|++|++|+++.-+-
T Consensus 137 l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCHH
Confidence 44 89999999999999998663
No 114
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=30.55 E-value=47 Score=31.22 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.7
Q ss_pred EEcCCCCceeCCCEEEEEEec
Q 026301 165 WSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+.+.+|+.|++|++|+++.-+
T Consensus 75 i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 75 RNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEcCCcCEecCCCEEEEECcH
Confidence 478899999999999999854
No 115
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=30.04 E-value=49 Score=33.88 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=12.8
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|+.|++|++++..
T Consensus 56 ~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 56 EIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred EEEeCCCCEEeCCCEEEEEecc
Confidence 3455566666666666666543
No 116
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=29.14 E-value=52 Score=32.29 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=11.9
Q ss_pred EEcCCCCc-eeCCCEEEEEE
Q 026301 165 WSLKDGDH-VHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~-V~~G~~Il~i~ 183 (240)
+.+++|+. ++.|++++++.
T Consensus 56 i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 56 ILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred EEECCCCEEecCCCEEEEEe
Confidence 35566666 66666666664
No 117
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=28.38 E-value=67 Score=31.88 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=46.7
Q ss_pred cccCCCCCchhHHHHHHHHHHhhcCCCCCcccc----cccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEE
Q 026301 91 AIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCM----ATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS 166 (240)
Q Consensus 91 ~~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~----~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~ 166 (240)
.|.-|.-....-+-.|++|++. -||.-.+ +-+. ..+.++.+-+...|++. ++.
T Consensus 74 tv~vP~faESiteG~l~~~lK~----~Gd~v~~DE~va~IE-TDK~tv~V~sP~sGvi~------------------e~l 130 (457)
T KOG0559|consen 74 TVEVPPFAESITEGDLAQWLKK----VGDRVNEDEAVAEIE-TDKTTVEVPSPASGVIT------------------ELL 130 (457)
T ss_pred EEecCCcccccccchHHHHhhC----cccccccchhheeee-ccceeeeccCCCcceee------------------EEe
Confidence 3555665656666788888864 1442211 1122 33467777777777764 337
Q ss_pred cCCCCceeCCCEEEEEEe
Q 026301 167 LKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 167 v~DG~~V~~G~~Il~i~G 184 (240)
++|||.|.+|+.++.++-
T Consensus 131 vk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 131 VKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cCCCCcccCCceeEEecC
Confidence 899999999999999975
No 118
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=28.36 E-value=55 Score=33.54 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+.-++|.+++||.|++|++|++++..
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 34568999999999999999998754
No 119
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=28.00 E-value=61 Score=32.50 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-++|++++||.|++|++|++++..
T Consensus 18 i~~~~v~~Gd~V~~g~~l~~iEt~ 41 (547)
T PRK11855 18 VIEWLVKEGDTVEEDQPLVTVETD 41 (547)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEec
Confidence 467899999999999999988654
No 120
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=27.51 E-value=50 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=24.0
Q ss_pred EechhhhHHHHHHHHHHHHHHhH-----HHHHHHHHHH
Q 026301 183 SGRAHSIVIAERVVLNFMQRMSG-----IATLTRAMAD 215 (240)
Q Consensus 183 ~G~a~~IL~aERvaLN~Lq~lSG-----IAT~Tr~~V~ 215 (240)
+..+..|-.+|++++++|..++. +...+-+.++
T Consensus 47 ~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 47 QSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44567899999999999999876 4444444443
No 121
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=26.76 E-value=87 Score=24.16 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=31.7
Q ss_pred cCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 026301 167 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 202 (240)
Q Consensus 167 v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~ 202 (240)
..||+.+..|..++.+.|...+|-.|.+.+.+-++.
T Consensus 41 ~~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 41 KEDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred eeCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 569999999999999999999999999998887764
No 122
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=25.96 E-value=62 Score=31.20 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEech
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
.-.++.+.|.+.|++||+++++.=.-
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEECcHH
Confidence 34567899999999999999997543
No 123
>PRK06748 hypothetical protein; Validated
Probab=25.38 E-value=82 Score=24.34 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.3
Q ss_pred EEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 132 ~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
+...+.|..+|++. ++.+++|+.++.|++|+.++
T Consensus 41 ~~~ei~Ap~~G~v~------------------~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 41 QKVEIKVGISGYIE------------------SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred ceEEEecCCCEEEE------------------EEEeCCCCEECCCCEEEEEE
Confidence 44577777777653 34678999999999999995
No 124
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=25.35 E-value=64 Score=35.79 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-++|.+++||.|++|++|++++-.
T Consensus 1143 v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1143 FWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEeCCCCEECCCCEEEEEEec
Confidence 458899999999999999998753
No 125
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=24.96 E-value=74 Score=32.46 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-++|+++.||.|+.|+++++++.+
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vEtd 42 (590)
T TIGR02927 19 ITQWLKAEGDTVELDEPLLEVSTD 42 (590)
T ss_pred EEEEEECCCCEEeCCCeEEEEEec
Confidence 357899999999999998888544
No 126
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=24.57 E-value=72 Score=31.69 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=15.2
Q ss_pred EEEEcCCCCceeCCCEEEEEEe
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G 184 (240)
.+|++++|+.|++|+++++++-
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~iET 41 (464)
T PRK11892 20 AKWLKKEGDKVKSGDVIAEIET 41 (464)
T ss_pred EEEEecCCCEecCCCeEEEEEe
Confidence 4677777777777777777643
No 127
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=24.49 E-value=74 Score=32.10 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.3
Q ss_pred EEEEcCCCCceeCCCEEEEEEe
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G 184 (240)
++|++++|+.|+.|++|++++.
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~vet 38 (546)
T TIGR01348 17 IEVLVKPGDKVEAGQSLITLES 38 (546)
T ss_pred EEEEeCCCCEEcCCCEEEEEEc
Confidence 4566667777766666666644
No 128
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=24.41 E-value=1.1e+02 Score=24.34 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.3
Q ss_pred ceeCCCEEEEEEechh
Q 026301 172 HVHKGLQFGKVSGRAH 187 (240)
Q Consensus 172 ~V~~G~~Il~i~G~a~ 187 (240)
.|++|++|+|+.|...
T Consensus 75 ~v~~G~iifEi~~~~~ 90 (112)
T cd01433 75 RVKPGQILFEVRGVPE 90 (112)
T ss_pred EECCCCEEEEEeCcCc
Confidence 5789999999999975
No 129
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=24.36 E-value=2.1e+02 Score=21.13 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=41.0
Q ss_pred eeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 026301 142 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 202 (240)
Q Consensus 142 GVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~ 202 (240)
++..|+.-+...+|.-+ +++.....-+ +|...+.++|+..++-.+-+.+.+.++.
T Consensus 10 ~~~~~i~aaD~alKaa~--V~l~~~~~~~----~g~~~~~i~G~vs~V~~Av~a~~~~~~~ 64 (75)
T PF00936_consen 10 GIAAAIVAADAALKAAN--VELVEIELIC----GGKVTVIITGDVSAVKAAVDAAEEAAGK 64 (75)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEEES----TTEEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCC--EEEEEEEecC----CCeEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 45667888889999886 6654332222 6789999999999998888887777654
No 130
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=24.33 E-value=73 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
.++++++|+.|..|+.+++++
T Consensus 136 ~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 136 VEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEeCCCCEECCCCEEEEEC
Confidence 467999999999999999874
No 131
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=23.75 E-value=76 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCceeCCCEEEEEE
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
.-.+++++||+.|..|+.|++++
T Consensus 133 ~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 133 VVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEEcCCCCEeCCCCEEEEeC
Confidence 33567999999999999999874
No 132
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=23.37 E-value=17 Score=35.79 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=7.4
Q ss_pred cCCCCceeCCCEEEE
Q 026301 167 LKDGDHVHKGLQFGK 181 (240)
Q Consensus 167 v~DG~~V~~G~~Il~ 181 (240)
+.+||.|++|+++++
T Consensus 45 V~~gD~VkkGq~LfE 59 (447)
T COG1726 45 VREGDAVKKGQVLFE 59 (447)
T ss_pred eccCCeeeccceeee
Confidence 345555555554443
No 133
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=22.82 E-value=85 Score=34.76 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
+.-++|.+++||.|++|++|++++-
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEA 1107 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEe
Confidence 4457899999999999999999985
No 134
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=22.68 E-value=1.2e+02 Score=24.49 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=26.5
Q ss_pred eeEEcH-HHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 142 GIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 142 GVvAGl-e~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+--|+ +.|...+... ..++ .-+.|+.|++|+.+++++..
T Consensus 16 ~~~vGiT~~aq~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 16 VVRLGLTSRMQENLGNI---LHID-LPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEcCCCEEEEEEec
Confidence 345564 5555555333 3454 45669999999999999864
No 135
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=22.09 E-value=80 Score=23.45 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=15.2
Q ss_pred EcCCCCceeCCCEEEEEEec
Q 026301 166 SLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 166 ~v~DG~~V~~G~~Il~i~G~ 185 (240)
.++.||.|++|+.|..+...
T Consensus 56 ~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBSC
T ss_pred cceecccccCCCEEEecCCC
Confidence 47899999999999998743
No 136
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=21.99 E-value=74 Score=32.62 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.++++||.|++||.++++.
T Consensus 546 F~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 546 FEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred eEEEecCcCEEcCCCEEEEec
Confidence 567899999999999999884
No 137
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=20.45 E-value=80 Score=32.73 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.++++||.|++||+++++.
T Consensus 562 F~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 562 FTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 566899999999999999884
No 138
>PRK00624 glycine cleavage system protein H; Provisional
Probab=20.28 E-value=1.3e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=26.6
Q ss_pred eeEEcH-HHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEec
Q 026301 142 GIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 142 GVvAGl-e~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+.-|+ +++...+... ..++ ..+.|+.|++|+.+++|+..
T Consensus 18 ~~~vGiT~~a~~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKMQENLGNI---LHID-LPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEeCCCEEEEEEec
Confidence 356664 4555444333 3444 44679999999999999864
Done!