Query 026301
Match_columns 240
No_of_seqs 187 out of 1194
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l0g_A Nicotinate-nucleotide p 100.0 1.2E-45 4E-50 337.5 13.7 148 92-240 16-165 (300)
2 1x1o_A Nicotinate-nucleotide p 100.0 2.1E-44 7.3E-49 326.3 15.6 143 97-240 9-153 (286)
3 3tqv_A Nicotinate-nucleotide p 100.0 1E-43 3.5E-48 322.9 17.7 141 97-240 14-156 (287)
4 1o4u_A Type II quinolic acid p 100.0 9.5E-43 3.2E-47 315.7 16.5 144 92-240 6-150 (285)
5 3gnn_A Nicotinate-nucleotide p 100.0 2.7E-42 9.3E-47 314.9 14.9 139 100-240 27-167 (298)
6 3paj_A Nicotinate-nucleotide p 100.0 2.2E-41 7.4E-46 311.6 16.7 140 100-240 44-189 (320)
7 1qpo_A Quinolinate acid phosph 100.0 2.2E-41 7.6E-46 306.3 15.2 139 100-240 8-152 (284)
8 2b7n_A Probable nicotinate-nuc 100.0 6E-39 2.1E-43 287.5 16.0 136 101-240 2-139 (273)
9 2jbm_A Nicotinate-nucleotide p 100.0 3.4E-38 1.2E-42 286.4 16.3 135 101-240 16-154 (299)
10 1qap_A Quinolinic acid phospho 100.0 4E-38 1.4E-42 286.2 15.9 138 100-240 20-166 (296)
11 3c2e_A Nicotinate-nucleotide p 100.0 1E-37 3.6E-42 282.7 15.0 135 101-240 12-156 (294)
12 2i14_A Nicotinate-nucleotide p 99.9 4.1E-27 1.4E-31 220.9 7.1 132 103-240 15-157 (395)
13 2i1o_A Nicotinate phosphoribos 99.9 6.4E-27 2.2E-31 219.9 8.3 132 103-240 15-161 (398)
14 2f7f_A Nicotinate phosphoribos 99.7 1.6E-17 5.3E-22 160.1 11.4 113 127-240 30-179 (494)
15 3os4_A Naprtase, nicotinate ph 97.9 1.3E-05 4.6E-10 75.7 6.2 103 129-231 32-182 (407)
16 1yir_A Naprtase 2, nicotinate 97.5 0.00043 1.5E-08 65.3 9.7 95 129-230 36-185 (408)
17 4hl7_A Naprtase, nicotinate ph 97.4 6.7E-05 2.3E-09 71.9 3.3 102 129-230 36-191 (446)
18 3dhf_A Nicotinamide phosphorib 97.0 0.0016 5.4E-08 62.9 8.2 54 161-216 114-171 (484)
19 1vlp_A Naprtase, nicotinate ph 96.9 0.001 3.6E-08 63.3 6.0 98 130-230 42-196 (441)
20 2im5_A Nicotinate phosphoribos 96.7 0.0054 1.8E-07 57.6 9.2 93 129-230 27-172 (394)
21 1ybe_A Naprtase, nicotinate ph 96.3 0.014 4.8E-07 55.7 9.4 56 174-230 129-208 (449)
22 3crk_C Dihydrolipoyllysine-res 82.7 0.92 3.1E-05 32.8 3.1 25 161-185 21-45 (87)
23 1iyu_A E2P, dihydrolipoamide a 82.4 0.98 3.4E-05 31.8 3.1 23 163-185 16-38 (79)
24 1z6h_A Biotin/lipoyl attachmen 82.4 1 3.5E-05 30.7 3.1 23 163-185 11-33 (72)
25 2dsj_A Pyrimidine-nucleoside ( 81.8 14 0.00048 34.9 11.7 58 129-187 324-394 (423)
26 2dnc_A Pyruvate dehydrogenase 80.4 1.2 3.9E-05 33.5 3.0 25 161-185 23-47 (98)
27 2d5d_A Methylmalonyl-COA decar 80.2 1.4 4.6E-05 30.1 3.1 22 164-185 18-39 (74)
28 1qjo_A Dihydrolipoamide acetyl 79.3 1.2 4.1E-05 31.2 2.7 24 162-185 17-40 (80)
29 1brw_A PYNP, protein (pyrimidi 79.2 14 0.00046 35.1 10.6 60 129-188 331-403 (433)
30 2dne_A Dihydrolipoyllysine-res 77.1 1.4 4.7E-05 33.8 2.6 24 162-185 24-47 (108)
31 1k8m_A E2 component of branche 76.6 1.2 4.2E-05 32.9 2.1 25 161-185 20-44 (93)
32 1ghj_A E2, E2, the dihydrolipo 76.1 1.1 3.9E-05 31.4 1.7 23 163-185 19-41 (79)
33 1dcz_A Transcarboxylase 1.3S s 76.0 2.1 7.2E-05 29.5 3.1 22 164-185 21-42 (77)
34 1gjx_A Pyruvate dehydrogenase; 75.8 1.4 4.8E-05 31.0 2.1 24 162-185 18-41 (81)
35 2dn8_A Acetyl-COA carboxylase 75.3 1.7 6E-05 32.2 2.7 21 164-184 30-50 (100)
36 1bdo_A Acetyl-COA carboxylase; 74.3 1.5 5.1E-05 30.8 2.0 22 164-185 24-45 (80)
37 1uou_A Thymidine phosphorylase 73.8 14 0.00046 35.6 9.0 60 129-188 368-438 (474)
38 3h5q_A PYNP, pyrimidine-nucleo 73.6 15 0.00051 34.9 9.2 64 129-192 334-410 (436)
39 1y8o_B Dihydrolipoyllysine-res 73.0 2.4 8.3E-05 33.7 3.1 25 161-185 43-67 (128)
40 2l5t_A Lipoamide acyltransfera 72.8 1.1 3.9E-05 31.2 1.0 24 162-185 18-41 (77)
41 2kcc_A Acetyl-COA carboxylase 72.8 2.8 9.7E-05 30.1 3.2 23 162-184 16-38 (84)
42 2k32_A A; NMR {Campylobacter j 72.0 2.9 9.8E-05 31.3 3.2 22 164-185 14-35 (116)
43 2ejm_A Methylcrotonoyl-COA car 71.5 2.6 8.9E-05 31.2 2.8 22 164-185 27-48 (99)
44 2tpt_A Thymidine phosphorylase 71.5 10 0.00035 36.0 7.6 61 129-189 336-409 (440)
45 2jku_A Propionyl-COA carboxyla 65.7 3.3 0.00011 30.4 2.3 22 164-185 38-59 (94)
46 1pmr_A Dihydrolipoyl succinylt 62.0 0.86 2.9E-05 32.3 -1.5 23 163-185 20-42 (80)
47 1zy8_K Pyruvate dehydrogenase 49.6 3.5 0.00012 35.7 0.0 22 162-183 20-41 (229)
48 2k7v_A Dihydrolipoyllysine-res 49.6 1.9 6.6E-05 30.9 -1.4 23 163-185 14-36 (85)
49 1j5k_A Heterogeneous nuclear r 48.4 69 0.0024 23.0 7.0 70 131-205 13-86 (89)
50 3fpp_A Macrolide-specific effl 46.4 11 0.00037 32.8 2.6 22 164-185 44-65 (341)
51 2f1m_A Acriflavine resistance 45.1 7.5 0.00026 32.8 1.4 23 164-186 35-57 (277)
52 3our_B EIIA, phosphotransferas 44.9 13 0.00045 31.6 2.9 21 163-183 118-138 (183)
53 3dva_I Dihydrolipoyllysine-res 44.2 4.7 0.00016 37.8 0.0 21 163-183 20-40 (428)
54 3lnn_A Membrane fusion protein 42.8 13 0.00045 32.4 2.7 22 164-185 70-91 (359)
55 1zzk_A Heterogeneous nuclear r 42.6 86 0.0029 22.0 6.7 54 147-205 26-79 (82)
56 2gpr_A Glucose-permease IIA co 42.5 16 0.00053 30.0 2.9 22 162-183 90-111 (154)
57 3n6r_A Propionyl-COA carboxyla 39.3 17 0.0006 35.7 3.2 25 160-184 621-645 (681)
58 1f3z_A EIIA-GLC, glucose-speci 38.7 19 0.00066 29.7 2.9 22 162-183 95-116 (161)
59 1bdo_A Acetyl-COA carboxylase; 38.4 21 0.00072 24.7 2.7 34 132-183 47-80 (80)
60 2l5t_A Lipoamide acyltransfera 36.4 30 0.001 23.7 3.2 19 165-183 58-76 (77)
61 2hh3_A KH-type splicing regula 36.0 1.3E+02 0.0044 22.6 7.0 50 148-202 31-80 (106)
62 1vf7_A Multidrug resistance pr 34.4 16 0.00056 32.4 1.9 22 165-186 57-78 (369)
63 4dk0_A Putative MACA; alpha-ha 34.3 12 0.0004 32.8 0.9 23 164-186 45-67 (369)
64 1ax3_A Iiaglc, glucose permeas 34.2 18 0.00061 29.9 2.0 22 162-183 95-116 (162)
65 1zko_A Glycine cleavage system 31.8 73 0.0025 25.4 5.2 41 140-184 29-70 (136)
66 3krm_A Insulin-like growth fac 30.1 1.5E+02 0.0051 22.9 6.7 69 132-203 85-157 (163)
67 1iyu_A E2P, dihydrolipoamide a 29.9 52 0.0018 22.6 3.6 21 165-185 55-75 (79)
68 3ne5_B Cation efflux system pr 29.6 40 0.0014 30.7 3.7 21 165-185 135-156 (413)
69 2auk_A DNA-directed RNA polyme 29.1 29 0.001 29.0 2.5 20 164-183 167-186 (190)
70 2auk_A DNA-directed RNA polyme 29.0 27 0.00093 29.2 2.3 19 164-182 63-81 (190)
71 1x4m_A FAR upstream element bi 27.6 1.7E+02 0.0059 21.0 6.6 51 148-201 35-85 (94)
72 3vot_A L-amino acid ligase, BL 27.2 84 0.0029 27.9 5.3 68 133-202 338-410 (425)
73 3hbl_A Pyruvate carboxylase; T 27.0 35 0.0012 35.9 3.1 23 162-184 1088-1110(1150)
74 3crk_C Dihydrolipoyllysine-res 26.2 48 0.0017 23.4 2.9 22 165-186 62-84 (87)
75 2xha_A NUSG, transcription ant 24.9 35 0.0012 29.2 2.3 18 164-181 22-39 (193)
76 3u9t_A MCC alpha, methylcroton 24.8 16 0.00053 36.1 0.0 25 160-184 611-635 (675)
77 3va7_A KLLA0E08119P; carboxyla 24.7 39 0.0013 35.9 3.0 22 163-184 1179-1200(1236)
78 3gku_A Probable RNA-binding pr 24.6 1.4E+02 0.0048 25.8 6.1 101 101-205 13-122 (225)
79 1k8m_A E2 component of branche 24.5 58 0.002 23.6 3.1 22 165-186 61-82 (93)
80 2hh2_A KH-type splicing regula 23.1 1.8E+02 0.0061 21.6 5.8 52 147-201 26-78 (107)
81 3bg3_A Pyruvate carboxylase, m 20.4 41 0.0014 33.7 2.1 24 161-184 659-682 (718)
82 2wfu_B Probable insulin-like p 20.2 50 0.0017 19.7 1.6 15 27-41 2-16 (26)
No 1
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=100.00 E-value=1.2e-45 Score=337.45 Aligned_cols=148 Identities=34% Similarity=0.476 Sum_probs=135.4
Q ss_pred ccCCCCCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 026301 92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD 171 (240)
Q Consensus 92 ~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~ 171 (240)
-+||.+....+++.|+.||+||+|.+||+||..+++.+. ++++|++||+||+||++++.++|+.+|++++++|+++||+
T Consensus 16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~ 94 (300)
T 3l0g_A 16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD 94 (300)
T ss_dssp --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 367777888999999999999998449999998888888 9999999999999999999999999999999999999999
Q ss_pred ceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 172 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 172 ~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
.|++|++|++++|++++||++||++||||||+|||||+|++||+++. +++|+|||||+||+|.+|||||
T Consensus 95 ~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV 165 (300)
T 3l0g_A 95 ITGKNSTLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSV 165 (300)
T ss_dssp EECSSCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred EeeCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 6999999999999999999997
No 2
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-44 Score=326.31 Aligned_cols=143 Identities=42% Similarity=0.613 Sum_probs=137.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCC
Q 026301 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (240)
Q Consensus 97 ~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G 176 (240)
++...+++.|+.||+||++ +||+||.++++++..++++|++||+||+||++++.++|+.+||+++++|+++||+.|++|
T Consensus 9 ~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g 87 (286)
T 1x1o_A 9 LWQGGLEEALRAWLREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEG 87 (286)
T ss_dssp -CCSSHHHHHHHHHHHHHT-TCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTT
T ss_pred cCcccHHHHHHHHHHhcCC-CCCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCC
Confidence 4556799999999999998 799999988888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 177 ~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++|++++||++||++||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 88 ~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pglr~~~kyAv 153 (286)
T 1x1o_A 88 TEVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRKTTPGLRALEKYAV 153 (286)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999994 6899999999999999999996
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=100.00 E-value=1e-43 Score=322.95 Aligned_cols=141 Identities=33% Similarity=0.552 Sum_probs=135.3
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCC
Q 026301 97 HPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 176 (240)
Q Consensus 97 ~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G 176 (240)
+|...+++.|++||+||+| +||+|+. + +++.+++++|++||+||+||++++.++|+.+|++++++|+++||+.|++|
T Consensus 14 ~~~~~~~~~i~~~L~ED~~-~gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g 90 (287)
T 3tqv_A 14 VPNDIVTRLVRESLAEDIA-TGDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVPAN 90 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTT
T ss_pred chHHHHHHHHHHHHHhhCC-CCccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCC
Confidence 4667899999999999998 7999985 5 88999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 177 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 177 ~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++|++++||++||++||||||+|||||+|++||+++ ++++|+|||||+||+|.+|||||
T Consensus 91 ~~v~~i~G~a~~ll~~ER~aLN~L~~~SGIAT~t~~~v~~~~g~~~~i~dTRKT~PglR~l~kyAV 156 (287)
T 3tqv_A 91 ARIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVKLISQYKTKLLDTRKTIPGFRLAQKYAV 156 (287)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999998 47999999999999999999996
No 4
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=9.5e-43 Score=315.69 Aligned_cols=144 Identities=28% Similarity=0.428 Sum_probs=133.0
Q ss_pred ccCCCCCchhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCC-eeEEcHHHHHHHHHHcCCCcEEEEEcCCC
Q 026301 92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKDG 170 (240)
Q Consensus 92 ~~~p~~~~~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKed-GVvAGle~a~~If~~lg~~l~V~~~v~DG 170 (240)
|---+|.....+++|+.||+||+| +||+||.++ ++..++++|++|++ ||+||++++.++|+.+| ++++|+++||
T Consensus 6 ~~~~~~~~~~~~~~i~~~l~ED~~-~gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~dG 80 (285)
T 1o4u_A 6 IHHHHHHMEKILDLLMSFVKEDEG-KLDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVEDG 80 (285)
T ss_dssp -------CHHHHHHHHHHHHHHHC-SCCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCTT
T ss_pred cchhhhhhhhhHHHHHHHHHhcCC-CCCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCCC
Confidence 444567788899999999999998 799999877 68899999999999 99999999999999998 9999999999
Q ss_pred CceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCEEeecCCCCcCchhHhhhcC
Q 026301 171 DHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 171 ~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~~~~IldTRKT~PGlR~leKyAV 240 (240)
+.|++|++|++++|++++||++||++||||||+|||||+|++||+++.+++|+|||||+||+|.+|||||
T Consensus 81 ~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~~SGIAT~t~~~v~~~~~~~i~~TRKt~Pglr~~~kyAv 150 (285)
T 1o4u_A 81 EYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150 (285)
T ss_dssp CEEESCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSEEECCSCCCTTTHHHHHHHH
T ss_pred CCcCCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEeecCCCChhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977999999999999999999996
No 5
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=100.00 E-value=2.7e-42 Score=314.94 Aligned_cols=139 Identities=37% Similarity=0.591 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEE
Q 026301 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF 179 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~I 179 (240)
..+++.|+.||+||+| +||+||.. ++++.+++++|++||+||+||++++.++|+.+|++++++|.++||+.|++|++|
T Consensus 27 ~~~~~~i~~~L~ED~~-~gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l 104 (298)
T 3gnn_A 27 AAIARNVADALAEDVG-SGDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTV 104 (298)
T ss_dssp HHHHHHHHHHHHHHHH-HC-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEE
T ss_pred HHHHHHHHHHHHhcCC-CCCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEE
Confidence 3688999999999998 79999975 578899999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 180 GKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 180 l~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
++++|++++||.+||++||||||+|||||+|++||+++. +++|+|||||+||+|.+|||||
T Consensus 105 ~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv 167 (298)
T 3gnn_A 105 CELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAV 167 (298)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCcchHHHHHhhH
Confidence 999999999999999999999999999999999999994 6999999999999999999996
No 6
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.2e-41 Score=311.59 Aligned_cols=140 Identities=32% Similarity=0.511 Sum_probs=133.9
Q ss_pred hhHHHHHHHHHHhhcCC----CCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeC
Q 026301 100 YDLKGVVKLALAEDAGD----RGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~----~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~ 175 (240)
..+++.|+.||+||+|. +||+||. +++++.+++++|++||+||+||++++.++|+.+|++++++|.++||+.|++
T Consensus 44 ~~~~~~i~~~L~ED~~~~~~~~gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~ 122 (320)
T 3paj_A 44 ADITRSVIDTLKEDLGGTLDPAADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTP 122 (320)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECT
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecC
Confidence 36889999999999971 5899998 778899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
|++|++++|++++||.+||++||||||+|||||+|++||+++ ++++++|||||+||+|.+|||||
T Consensus 123 g~~l~~v~G~a~~ll~~Er~aLN~L~~~SGIAT~t~~~v~aa~g~~~~i~~TRKT~PglR~l~kyAV 189 (320)
T 3paj_A 123 NQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAV 189 (320)
T ss_dssp TCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecCCCccchHHHhhhH
Confidence 999999999999999999999999999999999999999999 46999999999999999999996
No 7
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=100.00 E-value=2.2e-41 Score=306.29 Aligned_cols=139 Identities=32% Similarity=0.464 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHhhcCCCC--CcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHH-c-CCCcEEEEEcCCCCceeC
Q 026301 100 YDLKGVVKLALAEDAGDRG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~g--DlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~-l-g~~l~V~~~v~DG~~V~~ 175 (240)
..+++.|+.||+||+| +| |+||+++ +.+..++++|++|++||+||++++.++|+. + ||+++++|+++||+.|++
T Consensus 8 ~~~~~~i~~~l~ED~~-~g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~~ 85 (284)
T 1qpo_A 8 AAARAAIARGLDEDLR-YGPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPP 85 (284)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECT
T ss_pred HHHHHHHHHHHHHhCC-CCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEecC
Confidence 4578999999999998 78 9999988 889999999999999999999999999999 8 889999999999999999
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
|++|++++|++++||++||++||||||+|||||+|++||+++ ++++|++||||+||+|.+|||||
T Consensus 86 g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~~~~g~~~~i~~tRKt~Pglr~l~k~Av 152 (284)
T 1qpo_A 86 GEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 152 (284)
T ss_dssp TCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred CcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCCchHHHhhhh
Confidence 999999999999999999999999999999999999999998 46899999999999999999996
No 8
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=100.00 E-value=6e-39 Score=287.46 Aligned_cols=136 Identities=29% Similarity=0.470 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEE
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il 180 (240)
++++.|+.||+||+| +||+||. +++++.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.+|++|+
T Consensus 2 ~~~~~i~~~l~eD~~-~gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 77 (273)
T 2b7n_A 2 EIRTFLERALKEDLG-HGDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALM 77 (273)
T ss_dssp TTHHHHHHHHHHHHT-TCCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEE
T ss_pred cHHHHHHHHHHhcCC-CCCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEE
Confidence 367899999999998 7999998 5677899999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 181 ~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
+++|++++++.+||++||+|||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 78 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~tRkt~p~~r~~~~~A~ 139 (273)
T 2b7n_A 78 EIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999994 6899999999999999999995
No 9
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=100.00 E-value=3.4e-38 Score=286.44 Aligned_cols=135 Identities=30% Similarity=0.480 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEE
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG 180 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il 180 (240)
.+++.|+.||+||+| +||+||. +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.+|++|+
T Consensus 16 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~ 90 (299)
T 2jbm_A 16 TLAALVDSWLREDCP-GLNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVA 90 (299)
T ss_dssp HHHHHHHHHHHHHCS-SCCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEE
T ss_pred hHHHHHHHHHHhhCC-CCCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEE
Confidence 488999999999998 7999998 556 889999999999999999999999999998 99999999999999999999
Q ss_pred EEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CC--CEEeecCCCCcCchhHhhhcC
Q 026301 181 KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HP--ATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 181 ~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~--~~IldTRKT~PGlR~leKyAV 240 (240)
+++|+++++|.+||++||+|||+|||||+|++||+++ .+ ++++|||||+||+|.+|||||
T Consensus 91 ~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~~~tRkt~p~~r~~e~~A~ 154 (299)
T 2jbm_A 91 EVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 154 (299)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCChhhHHHHHHHH
Confidence 9999999999999999999999999999999999998 34 999999999999999999985
No 10
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=4e-38 Score=286.23 Aligned_cols=138 Identities=35% Similarity=0.599 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHhhcCCCC------CcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHc-CCCcEEEEEcCCCCc
Q 026301 100 YDLKGVVKLALAEDAGDRG------DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDH 172 (240)
Q Consensus 100 ~~l~~~I~~aL~EDig~~g------DlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~l-g~~l~V~~~v~DG~~ 172 (240)
.+++++|+.||+||+| | |+||+++ +.+..++++|++|++||+||++++.++|+.+ |++++|+|.++||+.
T Consensus 20 ~~~~~~i~~~l~ED~~--g~~~~~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~ 96 (296)
T 1qap_A 20 LDIPAAVAQALREDLG--GEVDAGNDITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDA 96 (296)
T ss_dssp HHHHHHHHHHHHHHTT--TSCCGGGCTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCE
T ss_pred cCHHHHHHHHHHHhCC--CCCCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCE
Confidence 3488999999999997 6 9999988 8899999999999999999999999999999 999999999999999
Q ss_pred eeCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CCCEEeecCCCCcCchhHhhhcC
Q 026301 173 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 173 V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~~~IldTRKT~PGlR~leKyAV 240 (240)
|++|++|++++|+++++|.+||++||+|||+|||||+|++||+++ +++++++||||+||+|.+|||||
T Consensus 97 v~~g~~~~~v~G~~~~~l~~Er~aLn~l~~~SgIAT~t~~~v~~~~gt~v~i~~tRkt~P~~r~~e~~Av 166 (296)
T 1qap_A 97 IHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 166 (296)
T ss_dssp ECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 46899999999999999999985
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=100.00 E-value=1e-37 Score=282.70 Aligned_cols=135 Identities=35% Similarity=0.561 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccccCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCC----
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG---- 176 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~li~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G---- 176 (240)
.+++.|+.||+||+| +||+||. +++ +.++++++++|++||+||++++.++|+.++ ++++|.++||+.|.+|
T Consensus 12 ~~~~~i~~~l~ED~~-~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~ 86 (294)
T 3c2e_A 12 AWRQDVTNWLSEDVP-SFDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDS 86 (294)
T ss_dssp HHHHHHHHHHHHHCS-SCCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSS
T ss_pred hHHHHHHHHHHhcCC-CCCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCC
Confidence 489999999999998 7999998 556 889999999999999999999999999998 9999999999999999
Q ss_pred --CEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHh--CC--CEEeecCCCCcCchhHhhhcC
Q 026301 177 --LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HP--ATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 177 --~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa--~~--~~IldTRKT~PGlR~leKyAV 240 (240)
++|++++|++++++.+||++||+|||+|||||+|++||+++ .+ ++++|||||+||+|.+|||||
T Consensus 87 ~~~~l~~v~G~~~~~l~~Er~~Ln~l~~~SgIAT~t~~~v~aa~~~~~~~~~~~tRkt~p~~r~~e~~A~ 156 (294)
T 3c2e_A 87 GKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156 (294)
T ss_dssp SCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 34 999999999999999999995
No 12
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.93 E-value=4.1e-27 Score=220.94 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcCCCCCccccccc---CCCcEEEEEEEEeC------CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCce
Q 026301 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHV 173 (240)
Q Consensus 103 ~~~I~~aL~EDig~~gDlTT~~li---~~~~~~~a~i~AKe------dGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V 173 (240)
++.|+.+|.||++ .|.|+++++ + +.++++++++|+ ++|+||++++.++|+.+ ++++. .++||+.|
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~--~~~i~-~~~eG~~v 88 (395)
T 2i14_A 15 EDEIKAGKTTDVY--FLRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGI--PVNVY-AMPEGTIF 88 (395)
T ss_dssp HHHHHHTTTSBHH--HHHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTS--SEEEE-ECCTTCEE
T ss_pred HHHHHHHHHhhch--HHHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCC--CcEEE-EEcCCCEe
Confidence 4679999999994 588877763 5 889999999999 99999999999999955 48886 99999999
Q ss_pred eCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 174 ~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
.+|+++++|+|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++||||
T Consensus 89 ~~ge~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 157 (395)
T 2i14_A 89 HPYEPVLQIEGDYADFGIYETALLGMLSQASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 157 (395)
T ss_dssp CTTSCSEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEECGGGGSCGGGHHHHHHHH
T ss_pred cCCCEEEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999994 5899999999999999999995
No 13
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.93 E-value=6.4e-27 Score=219.95 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhcCCCCCccccccc---CCCcEEEEEEEEeC----CeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeC
Q 026301 103 KGVVKLALAEDAGDRGDVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 103 ~~~I~~aL~EDig~~gDlTT~~li---~~~~~~~a~i~AKe----dGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~ 175 (240)
++.|+.+|.||++ .|.|++++. + +.++++++++|+ ++|+||++++.++|+.++ +++. .++||+.|.+
T Consensus 15 ~~~I~~~L~tD~Y--~~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v~~ 88 (398)
T 2i1o_A 15 DEDIKKGLASDVY--FERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLD--VDLY-AIPEGTILFP 88 (398)
T ss_dssp HHHHHHTCSSCTH--HHHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTSS--CEEE-ECCTTCEECS
T ss_pred HHHHHHHHHhhhh--HHHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhCC--eEEE-EeCCCCEECC
Confidence 4679999999994 587877665 5 788999999999 999999999999999654 8886 9999999999
Q ss_pred CC------EEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCchhHhhhcC
Q 026301 176 GL------QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240 (240)
Q Consensus 176 G~------~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGlR~leKyAV 240 (240)
|+ ++++|+|++.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++||||
T Consensus 89 g~~~g~~~~ll~v~G~~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 161 (398)
T 2i1o_A 89 RDANGLPVPFIRVEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSA 161 (398)
T ss_dssp BCTTSCBCEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSCGGGHHHHHHHH
T ss_pred CCcccccceEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999994 5899999999999999999995
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.72 E-value=1.6e-17 Score=160.14 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=99.9
Q ss_pred CCCcEEEEEEEEeCC------eeEEcHHHHHHHHHHcCCC---------------------------cEEEEEcCCCCce
Q 026301 127 PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS---------------------------LKVEWSLKDGDHV 173 (240)
Q Consensus 127 ~~~~~~~a~i~AKed------GVvAGle~a~~If~~lg~~---------------------------l~V~~~v~DG~~V 173 (240)
+.+.++..++++|.. +|+||++.+.+.++.+.-. .+ .+.++||+.|
T Consensus 30 ~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~-i~av~EG~~v 108 (494)
T 2f7f_A 30 RADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCT-VRSALEGDLV 108 (494)
T ss_dssp CTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCE-EEECCTTCEE
T ss_pred CCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCce-EEEecCCCcc
Confidence 557889999999985 8999999999999876411 23 3589999999
Q ss_pred eCCCEEEEEEechhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCEEeecCCCCcCc--hhHhhhcC
Q 026301 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTL--RLLDKWAV 240 (240)
Q Consensus 174 ~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSGIAT~Tr~~V~aa~--~~~IldTRKT~PGl--R~leKyAV 240 (240)
.+|+++++|+|++.+++.+||++||+|+|+|||||+|+++++++. ++..++||||+||. +..+|||+
T Consensus 109 ~~g~pll~v~Gp~~~~~~~Et~lLnil~~~S~IAT~a~r~v~aa~~~~v~~fgtRr~~~~~~a~~~~raa~ 179 (494)
T 2f7f_A 109 FNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAY 179 (494)
T ss_dssp CTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCcHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999995 46777899999986 88999874
No 15
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=97.89 E-value=1.3e-05 Score=75.74 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=79.2
Q ss_pred CcEEEEEEEEeCC----eeEEcHHHHHHHHHHcCCC-cEEEEE-----------------cCCCCce----eCCCEEEEE
Q 026301 129 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDPS-LKVEWS-----------------LKDGDHV----HKGLQFGKV 182 (240)
Q Consensus 129 ~~~~~a~i~AKed----GVvAGle~a~~If~~lg~~-l~V~~~-----------------v~DG~~V----~~G~~Il~i 182 (240)
+.+++.+++.|.+ +++||++++...++.+.-. -++++. .-+|+.+ .+|+++++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 5678889999976 7889999998888865300 001111 1145554 799999999
Q ss_pred EechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCEEe--ecCCCCcC
Q 026301 183 SGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATIL--ETRKTAPT 231 (240)
Q Consensus 183 ~G~a~~IL~aERvaLN~Lq~l---------------SGIAT~Tr~~V~aa-----~~~~Il--dTRKT~PG 231 (240)
+|+..+....|..+||++.++ |.|||+++++++++ .+..+. +||...+-
T Consensus 112 ~Gp~~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~aa~~~~~~~~~~~eFGtRR~~s~ 182 (407)
T 3os4_A 112 AGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNALSADIDITHFKLMDFGTRRRFSR 182 (407)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHTTTSCCTTCCEEECCSTTCSCH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhccccCCCeEEecccccccCH
Confidence 999999999999999999985 99999999999976 555565 68877653
No 16
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=97.48 E-value=0.00043 Score=65.29 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=73.7
Q ss_pred CcEEEEEEEEeC--C--eeEEcHHHHHHHHHHc-----------------------------CCCcEEEEEcCCCCceeC
Q 026301 129 DMEVEAHFLAKE--D--GIIAGIALAEMIFHEV-----------------------------DPSLKVEWSLKDGDHVHK 175 (240)
Q Consensus 129 ~~~~~a~i~AKe--d--GVvAGle~a~~If~~l-----------------------------g~~l~V~~~v~DG~~V~~ 175 (240)
+.++..+++.|. + ++++|++.+...++.+ ++ .+|++..+||+
T Consensus 36 ~~~~~f~~~~R~~~~~~~~~~GL~~~l~~l~~~~ft~~ei~yL~~~~~f~~~fl~~L~~~rf~~-~~v~I~a~EG~---- 110 (408)
T 1yir_A 36 NAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNP-RYVQTGIENDE---- 110 (408)
T ss_dssp TCEEEEEEEETTCCCCGGGHHHHHHHHHHHHHCCCCHHHHHHHHTSTTSCHHHHHHHHHCCCCG-GGEEEEEETTE----
T ss_pred CCEEEEEEEecCCCCcccHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhcCCCC-ceEEEEcCCCc----
Confidence 667888889987 4 7899999988887632 11 22333226665
Q ss_pred CCEEEEEEechhhhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-----CCEEe--ecCCCCc
Q 026301 176 GLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-----PATIL--ETRKTAP 230 (240)
Q Consensus 176 G~~Il~i~G~a~~IL~aERvaLN~Lq~l---------------SGIAT~Tr~~V~aa~-----~~~Il--dTRKT~P 230 (240)
++++|+|+..+.-..|..+||++.+. +.|||+++++++++. +..+. +||...+
T Consensus 111 --~~l~i~Gp~~~~~llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~~aa~~~~~~~~~l~dFG~RR~~~ 185 (408)
T 1yir_A 111 --FFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFS 185 (408)
T ss_dssp --EEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHHTTSCHHHHTTCEEEECCSTTCSC
T ss_pred --EEEEEEecHHHHHHHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHHHhhcccccCCCeEEEecCccccc
Confidence 78999999999999999999999996 899999999887764 56666 5887765
No 17
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=97.41 E-value=6.7e-05 Score=71.85 Aligned_cols=102 Identities=12% Similarity=0.161 Sum_probs=77.5
Q ss_pred CcEEEEEEEEeCC----eeEEcHHHHHHHHHHc-------------CC-----------C----cEEEEEcCCCCceeCC
Q 026301 129 DMEVEAHFLAKED----GIIAGIALAEMIFHEV-------------DP-----------S----LKVEWSLKDGDHVHKG 176 (240)
Q Consensus 129 ~~~~~a~i~AKed----GVvAGle~a~~If~~l-------------g~-----------~----l~V~~~v~DG~~V~~G 176 (240)
+.+++.+++.|.. +.+||++.+...++.+ ++ + ..-.+.+++|+.+.+|
T Consensus 36 ~~~v~fe~f~R~~p~~~~~~agL~~~l~~L~~l~ft~eei~yL~~~~~~~~~~fl~yL~~frf~~~~~~av~eg~~~~~~ 115 (446)
T 4hl7_A 36 DVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEMGIVKQGGKQ 115 (446)
T ss_dssp TCEEEEEEEEESCTTTHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHTTCCCCHHHHEEEEEECC----
T ss_pred CCeEEEEEEECCCCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCCHHHHHHHHhCCCCCeEEEEEeccccCcCC
Confidence 5678899999975 6779999888777742 10 0 1103457788888999
Q ss_pred CEEEEEEechhhhHHHHHHHHHHHHHH------hHHH---------HHHHHHHHHhC-----CCEEe--ecCCCCc
Q 026301 177 LQFGKVSGRAHSIVIAERVVLNFMQRM------SGIA---------TLTRAMADLAH-----PATIL--ETRKTAP 230 (240)
Q Consensus 177 ~~Il~i~G~a~~IL~aERvaLN~Lq~l------SGIA---------T~Tr~~V~aa~-----~~~Il--dTRKT~P 230 (240)
+++++|+|+..+....|..+||++.+. |.|| |+++++++++. +..+. +||...+
T Consensus 116 ep~l~VeGp~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~aA~~~~~~~~~l~eFGtRR~~s 191 (446)
T 4hl7_A 116 QLRISIRGSWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEMGTRRRFS 191 (446)
T ss_dssp EEEEEEEEEHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSTTCSC
T ss_pred EEEEEEEEEHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhhcccccCCCeEEecccccccC
Confidence 999999999999999999999999998 8997 89999999774 55555 6888875
No 18
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=97.01 E-value=0.0016 Score=62.93 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=48.7
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEechhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADL 216 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~a~~I----L~aERvaLN~Lq~lSGIAT~Tr~~V~a 216 (240)
++|. .++||+.|.+++++++|+|+.... -..|..+|| |.|.|.|||.+++++++
T Consensus 114 ~~I~-A~pEGt~v~~~~Pll~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~~ 171 (484)
T 3dhf_A 114 IEIK-AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKKI 171 (484)
T ss_dssp EEEE-ECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred eEEE-EECCCccccCCCcEEEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4554 789999999999999999998844 688999999 99999999999999986
No 19
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=96.92 E-value=0.001 Score=63.33 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=72.8
Q ss_pred cEEEEEEEEeCC------eeEEcHHHHHHHHHH--------------------------------cCCCcEEEE-EcCC-
Q 026301 130 MEVEAHFLAKED------GIIAGIALAEMIFHE--------------------------------VDPSLKVEW-SLKD- 169 (240)
Q Consensus 130 ~~~~a~i~AKed------GVvAGle~a~~If~~--------------------------------lg~~l~V~~-~v~D- 169 (240)
.++...++.|.+ +|++|++.+...++. +++..+|++ .++|
T Consensus 42 ~~~~f~~~~R~p~~~~~~~v~~GL~~~l~~l~~l~ft~eei~yL~~~~~~f~~~fl~~L~~~~f~~~~~~~v~I~a~~Eg 121 (441)
T 1vlp_A 42 VTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISFTSEEIE 121 (441)
T ss_dssp CEEEEEEEESCTTCCBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTCCCCHHHHEEEEEEEET
T ss_pred CEEEEEEEEeCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhcCCCCHHHHHHHHhcccCcCCCceEEEEEecCC
Confidence 447777888762 468999977765431 111012333 5688
Q ss_pred CCceeCCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCEEe--ecCCCCc
Q 026301 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATIL--ETRKTAP 230 (240)
Q Consensus 170 G~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq---~l------------SGIAT~Tr~~V~aa~~~~Il--dTRKT~P 230 (240)
|+.+. |+++++|+|+....-..|..+||++. +. +.|||++++++ +.+.++. +||....
T Consensus 122 Gt~v~-~ep~l~IeGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~--a~~~~l~dFG~RR~~~ 196 (441)
T 1vlp_A 122 GKPTH-YKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF--DNGIRFSEFGTRRRRS 196 (441)
T ss_dssp TEEEE-EEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH--HTTCCEEECCSTTCSC
T ss_pred CceEC-CEEEEEEEEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc--cCCCeEEecCCCCcCC
Confidence 99999 99999999999999999999999999 55 99999999987 4444554 6887765
No 20
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=96.74 E-value=0.0054 Score=57.55 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred CcEEEEEEEEeCC----e-eEEcHHHHHHHHHH------------------------------cCCCcEEEE-EcCCCCc
Q 026301 129 DMEVEAHFLAKED----G-IIAGIALAEMIFHE------------------------------VDPSLKVEW-SLKDGDH 172 (240)
Q Consensus 129 ~~~~~a~i~AKed----G-VvAGle~a~~If~~------------------------------lg~~l~V~~-~v~DG~~ 172 (240)
+.++..+++.|.+ + +++|++.+...++. +++ .+|++ .++||
T Consensus 27 ~~~v~f~~~~R~~~~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~~f~~~fl~~L~~~r~~~-~~v~I~a~~EG-- 103 (394)
T 2im5_A 27 RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDP-EEVTVSIDAQG-- 103 (394)
T ss_dssp TCEEEEEEEETTCCCCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHHCCCCG-GGEEEEECTTS--
T ss_pred CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCHHHHHHHHhcCCCC-ceEEEEEcCCC--
Confidence 6678888999873 4 88999987776542 111 22322 44666
Q ss_pred eeCCCEEEEEEechhhhHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCEEe--ecCCCCc
Q 026301 173 VHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATIL--ETRKTAP 230 (240)
Q Consensus 173 V~~G~~Il~i~G~a~~IL~aERvaLN~Lq---~l------------SGIAT~Tr~~V~aa~~~~Il--dTRKT~P 230 (240)
+++++|+|+..+.-..|..+||++. |. +.|||+++++ ++.+.++. +||...+
T Consensus 104 ----ep~l~I~Gp~~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~--a~~~~~l~dFG~RR~~~ 172 (394)
T 2im5_A 104 ----HLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM--REHRATFSIFGMRRRFS 172 (394)
T ss_dssp ----CEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHTTCCEEECCSTTCSC
T ss_pred ----cEEEEEEecHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH--hCCCCEEEEcCCccccc
Confidence 6999999999999999999999999 55 9999999997 55555555 6887766
No 21
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=96.34 E-value=0.014 Score=55.69 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=47.4
Q ss_pred eCCCEEEEEEechhhhHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHhCCCEEe--ecCCCC
Q 026301 174 HKGLQFGKVSGRAHSIVIAERVVLNFMQRM----------------------SGIATLTRAMADLAHPATIL--ETRKTA 229 (240)
Q Consensus 174 ~~G~~Il~i~G~a~~IL~aERvaLN~Lq~l----------------------SGIAT~Tr~~V~aa~~~~Il--dTRKT~ 229 (240)
..|+++++|+|+..+.-..|..+||++.+. |.|||+++++ .++.+.++. +||...
T Consensus 129 ~EGep~l~I~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~-~~a~~~~l~dFG~RR~~ 207 (449)
T 1ybe_A 129 RDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERL-RELPGLRISDFGTRRRH 207 (449)
T ss_dssp CSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH-TTCTTCCEEECCTTTCS
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHH-hccCCCeEEecCCcccC
Confidence 445899999999999999999999999999 9999999998 455555555 588776
Q ss_pred c
Q 026301 230 P 230 (240)
Q Consensus 230 P 230 (240)
.
T Consensus 208 s 208 (449)
T 1ybe_A 208 S 208 (449)
T ss_dssp C
T ss_pred c
Confidence 6
No 22
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=82.69 E-value=0.92 Score=32.82 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-++|++++|+.|++|+++++++..
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECC
Confidence 3468999999999999999999864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=82.37 E-value=0.98 Score=31.79 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++|+.|++|+++++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 56789999999999999999865
No 24
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=82.37 E-value=1 Score=30.72 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++|+.|++|+++++++..
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 46789999999999999999864
No 25
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.84 E-value=14 Score=34.94 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=45.4
Q ss_pred CcEEEEEEEEeCCeeEEcHH--HHHHHHHHc-----------CCCcEEEEEcCCCCceeCCCEEEEEEechh
Q 026301 129 DMEVEAHFLAKEDGIIAGIA--LAEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGRAH 187 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle--~a~~If~~l-----------g~~l~V~~~v~DG~~V~~G~~Il~i~G~a~ 187 (240)
..+ +..+.|.++|++..++ .+-.+...+ |+..-+.++++=||.|++|+++++++.+-.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 455 8899999999998843 222333333 347789999999999999999999999866
No 26
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.38 E-value=1.2 Score=33.48 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-++|++++||.|++|++|++++..
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 3478999999999999999999864
No 27
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=80.20 E-value=1.4 Score=30.09 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.7
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+|++++|+.|++|+++++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5688999999999999999864
No 28
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=79.30 E-value=1.2 Score=31.22 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-.+|++++|+.|++|+++++++..
T Consensus 17 v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 17 VTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcC
Confidence 457899999999999999999865
No 29
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=79.24 E-value=14 Score=35.07 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=46.5
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHc-----------CCCcEEEEEcCCCCceeCCCEEEEEEechhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~l-----------g~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~ 188 (240)
..+.+..+.|.++|++..++- +-.+...+ |+..-+.++++=||.|++|+++++++.+-..
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~ 403 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPD 403 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSSC
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCcc
Confidence 456788899999999998432 22333333 3477899999999999999999999998663
No 30
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=77.14 E-value=1.4 Score=33.76 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.8
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-++|++++||.|++|++|++++..
T Consensus 24 v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 24 IARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEcCCCCEecCCCEEEEEEcC
Confidence 467899999999999999999864
No 31
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=76.65 E-value=1.2 Score=32.88 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-++|.+++||.|++|++|++++..
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECS
T ss_pred EEEEEEcCCcCEECCCCEEEEEEcC
Confidence 4478899999999999999999864
No 32
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=76.06 E-value=1.1 Score=31.42 Aligned_cols=23 Identities=17% Similarity=0.370 Sum_probs=20.3
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++|+.|++|+++++++..
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEcCCCCEECCCCEEEEEEcc
Confidence 56789999999999999999853
No 33
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=76.02 E-value=2.1 Score=29.55 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|++++..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEET
T ss_pred EEEcCCcCEEcCCCEEEEEEcc
Confidence 5788999999999999999864
No 34
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=75.83 E-value=1.4 Score=31.05 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.4
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-.+|++++|+.|++|+++++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 367889999999999999999876
No 35
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.35 E-value=1.7 Score=32.18 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.2
Q ss_pred EEEcCCCCceeCCCEEEEEEe
Q 026301 164 EWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G 184 (240)
+|++++|+.|++|+++++++.
T Consensus 30 ~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 30 QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp EESSCTTEEECTTCEEEEEEE
T ss_pred EEEcCCcCEECCCCEEEEEEe
Confidence 578999999999999999984
No 36
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=74.34 E-value=1.5 Score=30.81 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+|++++|+.|++|+++++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 5689999999999999999874
No 37
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=73.81 E-value=14 Score=35.58 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred CcEEEEEEEEeCCeeEEcHH-----HHHHHH------HHcCCCcEEEEEcCCCCceeCCCEEEEEEechhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIA-----LAEMIF------HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 188 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle-----~a~~If------~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~ 188 (240)
..+.+..+.|.++|++..++ .+...+ ...|+++-+.++++=||.|++|+++++++.+-..
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~~ 438 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPA 438 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCChh
Confidence 45577889999999998743 222333 2344568899999999999999999999988664
No 38
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=73.64 E-value=15 Score=34.94 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.7
Q ss_pred CcEEEEEEEEeCCeeEEcHHH--HHHHHHHc-----------CCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHH
Q 026301 129 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEV-----------DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 192 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle~--a~~If~~l-----------g~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~a 192 (240)
..+.+..+.|.++|++..++- +-.+...+ |++.-+.++++=||.|++|+++++++-+...+-.+
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~~~~~a 410 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDV 410 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEESSSCCHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEeCChHhHHHH
Confidence 445788999999999998653 33444444 35778999999999999999999999333334333
No 39
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=72.95 E-value=2.4 Score=33.72 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEec
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.-++|+++.||.|++|++|++++..
T Consensus 43 ~V~~~~V~~Gd~V~~Gd~L~~iEa~ 67 (128)
T 1y8o_B 43 TVQRWEKKVGEKLSEGDLLAEIETD 67 (128)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEecCCCCEecCCCEEEEEEcC
Confidence 3467889999999999999988753
No 40
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=72.79 E-value=1.1 Score=31.22 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEEec
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
-.+|++++|+.|++|+++++++..
T Consensus 18 v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 18 IVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEeCCCCEECCCCEEEEEEcc
Confidence 357789999999999999999864
No 41
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=72.77 E-value=2.8 Score=30.10 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEcCCCCceeCCCEEEEEEe
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
-++|.+++|+.|++|++|++++.
T Consensus 16 v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 16 LTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp EEEESSCTTEEECTTCEEEEEEC
T ss_pred EEEEECCCCCEECCCCEEEEEEe
Confidence 34788999999999999999984
No 42
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=72.03 E-value=2.9 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|+++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5689999999999999999987
No 43
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=71.54 E-value=2.6 Score=31.23 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+|++++|+.|++|++|++++-.
T Consensus 27 ~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp EECCCTTEEECSSCEEEEEESS
T ss_pred EEECCCCCEECCCCEEEEEEcc
Confidence 4788999999999999999854
No 44
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=71.51 E-value=10 Score=35.96 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=47.0
Q ss_pred CcEEEEEEEEeCCeeEEcHH--HHHHHHHHcC-----------CCcEEEEEcCCCCceeCCCEEEEEEechhhh
Q 026301 129 DMEVEAHFLAKEDGIIAGIA--LAEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 189 (240)
Q Consensus 129 ~~~~~a~i~AKedGVvAGle--~a~~If~~lg-----------~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~I 189 (240)
..+.+..+.|.++|++..++ .+-.+...+| +..-+.++++=||.|++|+++++++.+-...
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~ 409 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENN 409 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCHhh
Confidence 45677889999999998843 2223333333 4777899999999999999999999986643
No 45
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=65.70 E-value=3.3 Score=30.40 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.4
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
+|.+++|+.|++|++|++++..
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC-
T ss_pred EEECCCCCEEcCCCEEEEEecc
Confidence 6788999999999999999864
No 46
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=61.98 E-value=0.86 Score=32.33 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++||.|++|+++++++..
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEECCCcCEECCCCEEEEEEcc
Confidence 56889999999999999998754
No 47
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=49.56 E-value=3.5 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=0.0
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++|++++||.|++|++|++++
T Consensus 20 I~~w~vk~Gd~V~~Gd~L~~iE 41 (229)
T 1zy8_K 20 IVKWLKKEGEAVSAGDALCEIE 41 (229)
T ss_dssp ----------------------
T ss_pred EEEEecCCCCEeCCCCEEEEEe
Confidence 4678888999999998888886
No 48
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=49.56 E-value=1.9 Score=30.86 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.0
Q ss_pred EEEEcCCCCceeCCCEEEEEEec
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
.+|++++|+.|++|++|++++..
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSCC
T ss_pred EEEEcCCCCEEcCCCEEEEEEcc
Confidence 45788999999999999988754
No 49
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=48.36 E-value=69 Score=22.97 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=46.5
Q ss_pred EEEEEEEEeCC--eeEEc--HHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 026301 131 EVEAHFLAKED--GIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205 (240)
Q Consensus 131 ~~~a~i~AKed--GVvAG--le~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSG 205 (240)
..+.++....+ |.+-| =....+|-+..+ +++++.-. .-...+.+.+|.|+.+++..|.+.+.+++...||
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tg--a~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTC--CEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhC--CeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 34444544433 33322 467777888877 66665321 1113468899999999999999999999988776
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=46.37 E-value=11 Score=32.76 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.9
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|+++.-+
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCH
T ss_pred EEEeCCCCEECCCCEEEEEChH
Confidence 5578999999999999999876
No 51
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=45.10 E-value=7.5 Score=32.78 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++.-+-
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCHH
T ss_pred EEEcCCCCEecCCCEEEEECcHH
Confidence 35789999999999999998763
No 52
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=44.88 E-value=13 Score=31.60 Aligned_cols=21 Identities=14% Similarity=0.163 Sum_probs=18.9
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++.++++||.|++|+.|+++.
T Consensus 118 F~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 118 FTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EEECSCTTCEECTTCEEEEEC
T ss_pred ceEEEeCcCEEcCCCEEEEEC
Confidence 677899999999999999884
No 53
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=44.22 E-value=4.7 Score=37.82 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEEcCCCCceeCCCEEEEEE
Q 026301 163 VEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~ 183 (240)
++|++++||.|++||+|++++
T Consensus 20 ~~w~v~~Gd~V~~gd~l~~vE 40 (428)
T 3dva_I 20 VKWFVKPGDEVNEDDVLCEVQ 40 (428)
T ss_dssp ---------------------
T ss_pred EEEEcCCCCEECCCCEEEEEE
Confidence 567777777777777777665
No 54
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=42.80 E-value=13 Score=32.42 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred EEEcCCCCceeCCCEEEEEEec
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~ 185 (240)
++++++|+.|++|++|+++.-+
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 4578999999999999999976
No 55
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=42.56 E-value=86 Score=22.04 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHHhH
Q 026301 147 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205 (240)
Q Consensus 147 le~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~lSG 205 (240)
=....++-+..+ +++++.-. .-...+..+++.|+.+++..|.+.+.+++...+|
T Consensus 26 G~~Ik~I~~~tg--a~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 26 GQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp GHHHHHHHHHHC--CEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHC--CEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 467788888887 66665321 1112467899999999999999999999987765
No 56
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=42.53 E-value=16 Score=29.97 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++.+++.||.|++|++|+++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 3567899999999999999883
No 57
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=39.28 E-value=17 Score=35.73 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
+.-++|.+++||.|++|++|++++.
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 4446899999999999999999974
No 58
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=38.73 E-value=19 Score=29.71 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=18.8
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++.+++.||.|++|++|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 3566899999999999999883
No 59
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=38.38 E-value=21 Score=24.68 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.3
Q ss_pred EEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEE
Q 026301 132 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 132 ~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
....+.|+.+|++.. ..+.+|+.|.+|+.|++++
T Consensus 47 ~~~~i~Ap~~G~v~~------------------~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 47 MMNQIEADKSGTVKA------------------ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEEEECSSCEEEEE------------------ECSCTTCEECTTCEEEEEC
T ss_pred EEEEEECCCCEEEEE------------------EEcCCCCEECCCCEEEEEC
Confidence 456677777776533 3577999999999999873
No 60
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=36.35 E-value=30 Score=23.69 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.7
Q ss_pred EEcCCCCceeCCCEEEEEE
Q 026301 165 WSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~ 183 (240)
..+..|+.+.+|+.+++++
T Consensus 58 ~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 58 ILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp ECCCTTCEECSCSEEEEEE
T ss_pred EEeCCcCEECCCCEEEEEE
Confidence 4678999999999999875
No 61
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.01 E-value=1.3e+02 Score=22.62 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHH
Q 026301 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 202 (240)
Q Consensus 148 e~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~ 202 (240)
....+|-+..+ +++++.-.++ ...+.+++|+|+.+++..|.+.+..++..
T Consensus 31 ~~Ik~I~~~TG--akI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 31 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHT--CEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 67777888887 7777644333 23467899999999999999999888764
No 62
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=34.45 E-value=16 Score=32.44 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEcCCCCceeCCCEEEEEEech
Q 026301 165 WSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~a 186 (240)
+++++|+.|++|++|+++.-+.
T Consensus 57 v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 57 RLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp CCSCSSEEECTTSEEEEECCHH
T ss_pred EEcCCCCEEcCCCEEEEECcHH
Confidence 4789999999999999998653
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.26 E-value=12 Score=32.82 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEcCCCCceeCCCEEEEEEech
Q 026301 164 EWSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~G~a 186 (240)
++++++|+.|++|++|+++.-+.
T Consensus 45 ~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 45 KLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp EECCCTTSCCCSSCCCEECCCHH
T ss_pred EEEECCCCEECCCCEEEEEcCHH
Confidence 56799999999999999998764
No 64
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=34.23 E-value=18 Score=29.91 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEE
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~ 183 (240)
-++.+++.||.|++|++|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 3566899999999999999884
No 65
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=31.76 E-value=73 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=27.5
Q ss_pred CCeeEEc-HHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 140 EDGIIAG-IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 140 edGVvAG-le~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
.+-+.-| .+.+...+ |.-..|++ .+.|+.|++|++++.++.
T Consensus 29 ~~~~~vGit~~a~~~l---G~i~~V~l-p~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 29 DKVATVGITNHAQEQL---GDVVYVDL-PEVGREVKKGEVVASIES 70 (136)
T ss_dssp TTEEEEEECHHHHHHH---CSEEEEEC-CCTTCEECTTCEEEEEEE
T ss_pred CCEEEEeeEhhhcccC---CCcEEEEe-cCCCCEEeCCCEEEEEEE
Confidence 3445677 56665554 42133332 489999999999999984
No 66
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=30.07 E-value=1.5e+02 Score=22.91 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=46.9
Q ss_pred EEEEEEEeCC--eeEE--cHHHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHHHH
Q 026301 132 VEAHFLAKED--GIIA--GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 203 (240)
Q Consensus 132 ~~a~i~AKed--GVvA--Gle~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq~l 203 (240)
.++++....+ |.+- |-....++-+..+ +++.+ -+||..-..++..+++.|+...+..|.+.++.+++..
T Consensus 85 ~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tg--a~I~i-~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 85 LETHIRVPASAAGRVIGKGGKTVNELQNLTA--AEVVV-PRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp EEEEEEEETTTHHHHHCGGGHHHHHHHHHHC--CEEEC-CTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcChhheeeEEcCCChHHHHHHHHhC--CeEEE-CCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 3444544443 3332 3567788888887 77764 3455443444568999999999999999999988753
No 67
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=29.93 E-value=52 Score=22.57 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.1
Q ss_pred EEcCCCCceeCCCEEEEEEec
Q 026301 165 WSLKDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~ 185 (240)
..+..|+.+.+|++|+++...
T Consensus 55 ~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 55 VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp ESCCTTCEEETTSEEEEEECC
T ss_pred EEeCCCCEECCCCEEEEEecC
Confidence 467899999999999998754
No 68
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=29.64 E-value=40 Score=30.66 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.4
Q ss_pred EEc-CCCCceeCCCEEEEEEec
Q 026301 165 WSL-KDGDHVHKGLQFGKVSGR 185 (240)
Q Consensus 165 ~~v-~DG~~V~~G~~Il~i~G~ 185 (240)
+++ ++|+.|++|++|+++.-+
T Consensus 135 v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 135 VYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECSCCTTCEECTTCEEEEEECC
T ss_pred EEeCCCCCEEcCCCEEEEEcCH
Confidence 456 899999999999999954
No 69
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=29.12 E-value=29 Score=29.00 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.6
Q ss_pred EEEcCCCCceeCCCEEEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGKVS 183 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i~ 183 (240)
...+.||+.|++|++|+++-
T Consensus 167 ~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 167 IVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCEEcCCCEEEEcc
Confidence 45789999999999999975
No 70
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=28.97 E-value=27 Score=29.22 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.7
Q ss_pred EEEcCCCCceeCCCEEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGKV 182 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~i 182 (240)
..+++||+.|++|++|++.
T Consensus 63 ~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp EESSCTTCEECTTCEEEEC
T ss_pred EEEecCCCEEcCCCEEEEE
Confidence 4589999999999999984
No 71
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=27.63 E-value=1.7e+02 Score=21.04 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCceeCCCEEEEEEechhhhHHHHHHHHHHHH
Q 026301 148 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 201 (240)
Q Consensus 148 e~a~~If~~lg~~l~V~~~v~DG~~V~~G~~Il~i~G~a~~IL~aERvaLN~Lq 201 (240)
....+|-+..+ +++++. ++|......+.+++|+|+.+.+..|-..+..++.
T Consensus 35 ~~Ik~I~~~tg--a~I~I~-~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 35 ETIKQLQERAG--VKMVMI-QDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp SHHHHHHHHHT--SEEEEC-CSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--CeEEec-CCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 45666777777 777643 4554333457899999999999999988888764
No 72
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=27.22 E-value=84 Score=27.91 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=39.9
Q ss_pred EEEEEEeCCeeEEcHHHHHHHHHHcCCCc-EEEEEcCCCCceeC----CCEEEEEEechhhhHHHHHHHHHHHHH
Q 026301 133 EAHFLAKEDGIIAGIALAEMIFHEVDPSL-KVEWSLKDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQR 202 (240)
Q Consensus 133 ~a~i~AKedGVvAGle~a~~If~~lg~~l-~V~~~v~DG~~V~~----G~~Il~i~G~a~~IL~aERvaLN~Lq~ 202 (240)
...+.+..+|++..++..+++.+ .|++ .+.+..+.|+.+.+ ++.++.+.....+.-.+++.+..+++.
T Consensus 338 ~~~~~~~~~G~~~~i~g~~~~~~--~p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~ 410 (425)
T 3vot_A 338 NYIIPVQGSGTFEKIDGLEEVKQ--RQEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDE 410 (425)
T ss_dssp EEECCCCSCEEEEEEETHHHHHT--CTTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCeEEEecCCHHHHhc--CCCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCc
Confidence 33444567888765544444443 2344 67888999999864 444555444444555666655555443
No 73
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=26.97 E-value=35 Score=35.91 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred EEEEEcCCCCceeCCCEEEEEEe
Q 026301 162 KVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 162 ~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
-++|.+++||.|++|++|+.++.
T Consensus 1088 v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1088 VTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEEECCCTTCEECTTCEEEEEES
T ss_pred EEEEEeCCCCEECCCCEEEEEEe
Confidence 36899999999999999999984
No 74
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=26.20 E-value=48 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.5
Q ss_pred EEcCCCC-ceeCCCEEEEEEech
Q 026301 165 WSLKDGD-HVHKGLQFGKVSGRA 186 (240)
Q Consensus 165 ~~v~DG~-~V~~G~~Il~i~G~a 186 (240)
+++++|+ .+..|++|+++.-..
T Consensus 62 ~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 62 ILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp ESSCTTCCCEETTCEEEEEESSS
T ss_pred EEECCCCeEECCCCEEEEEEccc
Confidence 5778999 899999999997543
No 75
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=24.92 E-value=35 Score=29.16 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.1
Q ss_pred EEEcCCCCceeCCCEEEE
Q 026301 164 EWSLKDGDHVHKGLQFGK 181 (240)
Q Consensus 164 ~~~v~DG~~V~~G~~Il~ 181 (240)
.++++||+.|++|++|++
T Consensus 22 ~L~V~dG~~VkkG~~lae 39 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAE 39 (193)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEECCCCEEcCCCEEEE
Confidence 347899999999999998
No 76
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=24.75 E-value=16 Score=36.06 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCCceeCCCEEEEEEe
Q 026301 160 SLKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 160 ~l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
+.-++|.+++||.|++|++|++++-
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp -------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 4557899999999999999998873
No 77
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=24.75 E-value=39 Score=35.90 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.3
Q ss_pred EEEEcCCCCceeCCCEEEEEEe
Q 026301 163 VEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 163 V~~~v~DG~~V~~G~~Il~i~G 184 (240)
++|++++||.|++|++|++++-
T Consensus 1179 ~~~~v~~Gd~V~~g~~l~~iEa 1200 (1236)
T 3va7_A 1179 WKPVAAVGDHVEAGDGVIIIEA 1200 (1236)
T ss_dssp EEESSCTTCEECSSCEEEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEe
Confidence 5799999999999999999985
No 78
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=24.59 E-value=1.4e+02 Score=25.81 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccc--------cCCCcEEEEEEEEeCCeeEEcHHHHHHHHHHcCCCcEEEEEcCCCCc
Q 026301 101 DLKGVVKLALAEDAGDRGDVTCMAT--------IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDH 172 (240)
Q Consensus 101 ~l~~~I~~aL~EDig~~gDlTT~~l--------i~~~~~~~a~i~AKedGVvAGle~a~~If~~lg~~l~V~~~v~DG~~ 172 (240)
.+++.|+.++.|=--+..|+..+.+ +.+.+++...+..+++-.=...++...+|+.+|-+.+++..+.++
T Consensus 13 TveeAi~~Al~~L~v~~d~l~~eVleeg~kGffGiG~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~~~~~~-- 90 (225)
T 3gku_A 13 TVEEAVTKALIELQTTSDKLTYEIVEKGSAGFLGIGSKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISVEYNET-- 90 (225)
T ss_dssp SHHHHHHHHHHHHTCCGGGEEEEEEECCBCCC--CCCBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEEEEETT--
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEEEecCCCccccccCceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEEEEecC--
Confidence 4777888887652111234443322 123456777777776543345678888999998666665533321
Q ss_pred eeCCCEEEEEEechhhhHHHHH-HHHHHHHHHhH
Q 026301 173 VHKGLQFGKVSGRAHSIVIAER-VVLNFMQRMSG 205 (240)
Q Consensus 173 V~~G~~Il~i~G~a~~IL~aER-vaLN~Lq~lSG 205 (240)
.+.+.+.+.|+--.+|.+-+ -.|+-||++..
T Consensus 91 --~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~ 122 (225)
T 3gku_A 91 --EKEMNVNLKGDDMGILIGKRGQTLDSLQYLVS 122 (225)
T ss_dssp --TTEEEEEEECHHHHHCSTTHHHHHHHHHHHHH
T ss_pred --CCEEEEEEcCCccceeecCCCeEhHHHHHHHH
Confidence 13578889998777776655 57788888644
No 79
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=24.50 E-value=58 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.8
Q ss_pred EEcCCCCceeCCCEEEEEEech
Q 026301 165 WSLKDGDHVHKGLQFGKVSGRA 186 (240)
Q Consensus 165 ~~v~DG~~V~~G~~Il~i~G~a 186 (240)
+.+.+|+.+.+|++|++++...
T Consensus 61 i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 61 LYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp ECCCSSCEECTTSEEEEEECSC
T ss_pred EEcCCCCEeCCCCEEEEEecCC
Confidence 5788999999999999998543
No 80
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.06 E-value=1.8e+02 Score=21.57 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCcEEEEEcCCCCc-eeCCCEEEEEEechhhhHHHHHHHHHHHH
Q 026301 147 IALAEMIFHEVDPSLKVEWSLKDGDH-VHKGLQFGKVSGRAHSIVIAERVVLNFMQ 201 (240)
Q Consensus 147 le~a~~If~~lg~~l~V~~~v~DG~~-V~~G~~Il~i~G~a~~IL~aERvaLN~Lq 201 (240)
=....+|-+..+ ++|++.-. .+. -...+.+++|.|+.+++..|.+.+.+++.
T Consensus 26 G~~Ik~I~~~TG--a~I~I~~~-~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 26 GENVKAINQQTG--AFVEISRQ-LPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp TCHHHHHHHHSS--SEEEECCC-CCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhC--CEEEEcCc-cCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 356777888877 77765432 211 12346899999999999999888887753
No 81
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=20.44 E-value=41 Score=33.73 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCceeCCCEEEEEEe
Q 026301 161 LKVEWSLKDGDHVHKGLQFGKVSG 184 (240)
Q Consensus 161 l~V~~~v~DG~~V~~G~~Il~i~G 184 (240)
.-++|.+++|+.|++|+++++++.
T Consensus 659 ~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 659 KVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEEECSCTTCCBCTTCCCEEEES
T ss_pred EEEEEEeCCCCeeCCCCEEEEEec
Confidence 346889999999999999999984
No 82
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=20.21 E-value=50 Score=19.69 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.7
Q ss_pred cCCchhHHHHHHHHH
Q 026301 27 SSHSCGQVIIEALLS 41 (240)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (240)
|.|-||.-+.|||-.
T Consensus 2 ~~~lCG~~L~eaL~~ 16 (26)
T 2wfu_B 2 SLRACGPALMDMLRV 16 (26)
T ss_dssp CBCCCHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHH
Confidence 568999999999864
Done!