RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026301
(240 letters)
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 280 bits (718), Expect = 4e-95
Identities = 119/155 (76%), Positives = 135/155 (87%)
Query: 86 GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 145
+ AI PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3 AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62
Query: 146 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205
GIALA+M+F EVDPSLKVEW+ DGD VHKGL+FGKV+G AHSI++AERVVLNFMQRMSG
Sbjct: 63 GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVVLNFMQRMSG 122
Query: 206 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 240
IATLT+AMAD A PA ILETRKTAP LRL+DKWAV
Sbjct: 123 IATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 189 bits (482), Expect = 7e-60
Identities = 73/137 (53%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V+LALAED G RGD+T A IP D EA +AKE+G++AG+ +AE +F +DP ++VEW
Sbjct: 4 VRLALAEDLG-RGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEW 62
Query: 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 223
+KDGD V G V G A S++ AER LNF+QR+SGIATLTR + A IL
Sbjct: 63 LVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARIL 122
Query: 224 ETRKTAPTLRLLDKWAV 240
+TRKT P LRLL+K+AV
Sbjct: 123 DTRKTTPGLRLLEKYAV 139
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 169 bits (430), Expect = 5e-52
Identities = 67/137 (48%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
+ ALAED G GD+T A IP D A +AKE+G++AG+ +AE +F +D ++VEW
Sbjct: 4 LDRALAEDLG-YGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEW 61
Query: 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATIL 223
+KDGD V G +V G A S++ AERV LN +QR+SGIAT TR + A A I
Sbjct: 62 LVKDGDRVEAGQVLLEVEGPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIA 121
Query: 224 ETRKTAPTLRLLDKWAV 240
+TRKT P LRLL+K+AV
Sbjct: 122 DTRKTTPGLRLLEKYAV 138
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 158 bits (402), Expect = 1e-47
Identities = 64/145 (44%), Positives = 91/145 (62%), Gaps = 3/145 (2%)
Query: 98 PTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
P + +V AL ED G RGD+T A IP D + EA +AKE G++AG+ +AE +F +
Sbjct: 2 PILLIDDLVDAALLEDLG-RGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELL 60
Query: 158 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 217
PS++++W +KDGD V G ++ G A +++ AER LNF+Q +SGIAT T M +
Sbjct: 61 GPSIEIQWLVKDGDRVKPGDVLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEAL 120
Query: 218 --HPATILETRKTAPTLRLLDKWAV 240
I +TRKT P LRLL+K+AV
Sbjct: 121 RGTNVRIADTRKTTPGLRLLEKYAV 145
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 139 bits (353), Expect = 2e-40
Identities = 60/137 (43%), Positives = 83/137 (60%), Gaps = 5/137 (3%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
+ L ED G GD+T A +P A +AKEDG++AG+ +A +F ++ ++VEW
Sbjct: 2 LDRWLREDLG-SGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEW 58
Query: 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 223
+KDGD V G +V G A S++ AER LNF+ R+SGIAT TR + A I
Sbjct: 59 LVKDGDRVEPGEVVAEVEGPARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIA 118
Query: 224 ETRKTAPTLRLLDKWAV 240
+TRKT P LRLL+K+AV
Sbjct: 119 DTRKTTPGLRLLEKYAV 135
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 137 bits (347), Expect = 2e-39
Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
LK + ED G+ GDVT P ++ E FLAK+ G+ AG + E + +D +
Sbjct: 6 LKQALNRFFLEDIGE-GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERI 64
Query: 162 KVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR-AMADLAHPA 220
+VE KDGD V KG V G S++ ERV+LN +QRMSGIAT+TR A+ L
Sbjct: 65 EVELHKKDGDLVKKGEIIATVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSH 124
Query: 221 T-ILETRKTAPTLRLLDKWAV 240
I +TRKT P LR+ DK+AV
Sbjct: 125 IRICDTRKTTPGLRMFDKYAV 145
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 126 bits (317), Expect = 4e-35
Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
L SH +V+ ALAEDA GD+T IP AH A+E G+ +GI +
Sbjct: 2 LTSHIIDR---IVEAALAEDA-PWGDITSETLIPASATASAHLTAREPGVFSGIDVFAAA 57
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 213
F VDP++ V ++ DG+ G V+G A S++ AER+ LNF QRMSGIATLT A
Sbjct: 58 FRLVDPAITVTLAVADGERFEAGDILATVTGPARSVLTAERIALNFTQRMSGIATLTAAF 117
Query: 214 ADLAH--PATILETRKTAPTLRLLDKWAV 240
D + A I++TRKT P LR+ +++AV
Sbjct: 118 VDAVNGTRARIVDTRKTTPGLRIFERYAV 146
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 117 bits (296), Expect = 4e-32
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 7/135 (5%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
+ EDA GDVT A IP D+ A +AK+DG+IAG+ A+ +F +KVE +D
Sbjct: 10 VEEDA-PFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHF--GVKVEVRKRD 66
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP----ATILET 225
G+ V G ++ G A +I++ ER LN + RMSGIAT TR + +L + T
Sbjct: 67 GEEVKAGEVILELKGNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGT 126
Query: 226 RKTAPTLRLLDKWAV 240
RKT P LRLLDK A+
Sbjct: 127 RKTLPGLRLLDKKAI 141
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 117 bits (296), Expect = 5e-32
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 2/149 (1%)
Query: 94 LPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMI 153
LP P L+ +V+ AL ED G GD+T A +P D +A++ G+IAG+ LA +
Sbjct: 3 LPPLPRLMLEPLVRAALLEDLGRAGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLA 62
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAM 213
F VDP +++ L DG V G +SG A ++ AER LNF+ +SGIAT T ++
Sbjct: 63 FRLVDPEIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTALNFLCHLSGIATATASI 122
Query: 214 ADL--AHPATILETRKTAPTLRLLDKWAV 240
A ++ TRKT P LR L+K+AV
Sbjct: 123 VAAIAGTKAKVVCTRKTTPGLRALEKYAV 151
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 113 bits (285), Expect = 2e-30
Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V+ ALAED G GD+T IP + +A + +E +IAG A + +F ++DP + V W
Sbjct: 13 VRRALAEDIGS-GDITAQ-LIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHW 70
Query: 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATIL 223
+ DG+ V + G A S++ ER LNF+Q +SG+AT R ADL +L
Sbjct: 71 QVADGERVSANQVLFHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLL 130
Query: 224 ETRKTAPTLRLLDKWAV 240
+TRKT P LRL K+AV
Sbjct: 131 DTRKTLPGLRLAQKYAV 147
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
N-terminal domain has an alpha/beta hammerhead fold.
Length = 88
Score = 107 bits (271), Expect = 2e-30
Identities = 38/90 (42%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 115 GDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 174
RGD+T A IP D +A +AKE+G++AG+ A +F + L+VEW +KDG+ V
Sbjct: 1 IGRGDLTTEALIPPDKRAKAVIIAKEEGVVAGLEEAAEVFELLG--LEVEWLVKDGERVE 58
Query: 175 KGLQFGKVSGRAHSIVIAERVVLNFMQRMS 204
G ++ G A +++ AERV LNF+QR+S
Sbjct: 59 AGDVILEIEGPARALLTAERVALNFLQRLS 88
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 110 bits (278), Expect = 2e-29
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 4/144 (2%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--D 158
+ + V++ AL ED DVT +AT+P D A +++E G++AG+ +A ++ EV
Sbjct: 14 EARAVIRRALDEDLRYGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGT 73
Query: 159 PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH 218
+V ++DG V G V+ ++ AER +LN + +SGIAT T A D
Sbjct: 74 DGYEVLDRVEDGARVPPGQALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVA 133
Query: 219 --PATILETRKTAPTLRLLDKWAV 240
A I +TRKT P LR L K+AV
Sbjct: 134 GTKAKIRDTRKTLPGLRALQKYAV 157
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 288
Score = 104 bits (262), Expect = 5e-27
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 8/136 (5%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEV-EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
L ED G RGD T + D +A ++AKE G+IAG+ +A +F +DP + +
Sbjct: 21 LREDIG-RGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVA 79
Query: 169 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR----AMADLAHPATILE 224
+G G ++ G ++++ ERV LN R+SGIATLTR +ADL P +++
Sbjct: 80 EGAACESGQVVAEIEGPLDALLMGERVALNLAMRLSGIATLTRQYVEKIADL--PTQLVD 137
Query: 225 TRKTAPTLRLLDKWAV 240
TRKT P LRLL+K+A
Sbjct: 138 TRKTTPGLRLLEKYAT 153
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 99.4 bits (248), Expect = 4e-25
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGI----ALAEMIFHE 156
++K ++ AL ED G RGD+ D + A +AK +G+ +G L EM
Sbjct: 2 EIKDFLEAALKEDLG-RGDLFERLLEK-DFKATAKIIAKSEGVFSGEKYALELLEMT--- 56
Query: 157 VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL 216
++ +++KDG+ KG ++ G ++ ER +LN +Q SGIATLT +
Sbjct: 57 ---GIECVFTIKDGERFKKGDILMEIEGDFSMLLKVERTLLNLLQHSSGIATLTSRYVEA 113
Query: 217 A--HPATILETRKTAPTLRLLDKWAV 240
H +L+TRKT P LR+ +K++V
Sbjct: 114 LESHKVKLLDTRKTRPLLRIFEKYSV 139
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 96.2 bits (240), Expect = 8e-24
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 119 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGD 171
D+ + I P D A F A+ED G++AG+ A + + P V ++ +G
Sbjct: 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGT 60
Query: 172 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRK 227
V G + G A +++ ERV+LN +QR+SGIAT T + A TRK
Sbjct: 61 VVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRK 120
Query: 228 TAPTLRLLDKWAV 240
T P LRLL+K+AV
Sbjct: 121 TTPGLRLLEKYAV 133
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 95.2 bits (237), Expect = 2e-23
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEW 165
V A+AED G GD T +P A + +E+ ++ G+ + + VDPS++V W
Sbjct: 29 VADAIAEDVGS-GDQTGR-LVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTW 86
Query: 166 SLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATIL 223
++GD + ++ G A +++ AER LNF+Q +SG+A+ TR D A IL
Sbjct: 87 RYREGDRMTADSTVCELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARIL 146
Query: 224 ETRKTAPTLRLLDKWAV 240
+TRKT P LRL K+AV
Sbjct: 147 DTRKTLPGLRLAQKYAV 163
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 290
Score = 87.7 bits (217), Expect = 1e-20
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 100 YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDP 159
+ + +K AL ED D + A + + AKE G++AG+ + + +F D
Sbjct: 11 FQIDDTLKAALREDVHSE-DYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDA 69
Query: 160 SLKVE--WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 217
+ + KDGD + G ++ G S++ ERV LNF+Q +SGIA++T A +
Sbjct: 70 EVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEAL 129
Query: 218 HPATI--LETRKTAPTLRLLDKWAV 240
I +TRKT P LRL +K+AV
Sbjct: 130 GDDRIKVFDTRKTTPNLRLFEKYAV 154
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 85.1 bits (211), Expect = 1e-19
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 101 DLKGVVKLALAEDAGDRGDVTCMAT---IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV 157
D+ V AL ED G D T +P D A + +EDG+ G E +F ++
Sbjct: 22 DIPAAVAQALREDLGGTVDANNDITAQLLPADSRSHATIITREDGVFCGKRWVEEVFIQL 81
Query: 158 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-L 216
+ +EW + DGD + +++G A ++ ER LNF+Q +SG+AT R + L
Sbjct: 82 GDDVTIEWHVDDGDVITANQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELL 141
Query: 217 AHPAT-ILETRKTAPTLRLLDKWAV 240
A T +L+TRKT P LR K+AV
Sbjct: 142 AGTNTQLLDTRKTLPGLRSALKYAV 166
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 55.9 bits (135), Expect = 3e-09
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L ED GD+T A F ++ G ++GI++A + + L ++ ++ D
Sbjct: 13 LLEDI-QGGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSD 69
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILET 225
G + G + G A ++ + V N ++ G++ M L I T
Sbjct: 70 GSQANAGQRLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACT 129
Query: 226 RKTAPTLRLLDKWAV 240
RK P RLL AV
Sbjct: 130 RKAIPGTRLLATQAV 144
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 53.8 bits (130), Expect = 1e-08
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L EDA GD+T A + + F A++ G++ G A I + L+V+ +
Sbjct: 8 LLEDA-PYGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAAS 64
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPAT-ILET 225
G V G + G A ++ + +V ++ SGIAT T M A +P + T
Sbjct: 65 GSRVAAGAVLLEAEGPAAALHLGWKVAQTLLEWASGIATATAEMVAAARAVNPDIVVATT 124
Query: 226 RKTAPTLRLL 235
RK P R L
Sbjct: 125 RKAFPGTRKL 134
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 51.8 bits (124), Expect = 6e-08
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
L ED G GD+T A D F A+++GI++G++ A + ++ +++++
Sbjct: 12 LLEDIG-YGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPS 68
Query: 170 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPATILE-T 225
G G + G A + + + ++ G+AT T M LA P ++ T
Sbjct: 69 GSRALAGTLLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACT 128
Query: 226 RKTAPTLRLLDKWAV 240
RK P R L AV
Sbjct: 129 RKAIPLTRPLAVKAV 143
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 48.8 bits (117), Expect = 2e-07
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 206 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240
IAT TR M + A I +TRKT P LRLL+K+AV
Sbjct: 1 IATATRRMVEAARGTKVRIADTRKTTPGLRLLEKYAV 37
>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional.
Length = 390
Score = 29.4 bits (66), Expect = 1.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 92 IKLPSHPTY---DLKGVVKLALAEDAGDRGDVTCMATI---PLDMEVE------AHFLAK 139
++ PS+P D++GVVKLA A D T + + PLD+ + FLA
Sbjct: 144 VETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAG 203
Query: 140 EDGIIAGIA 148
++AG+A
Sbjct: 204 HSDVLAGLA 212
>gnl|CDD|151471 pfam11024, DGF-1_4, Dispersed gene family protein 1 of Trypanosoma
cruzi region 4. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. Other
domains on this protein include DGF-1_N, DGF-1_2, and
DGF-1_5. This domain is just downstream from the
C-terminus, but not the C-terminus of proteins, also
annotated as being DGF-1, that constitute family
DGF-1_C.
Length = 75
Score = 26.8 bits (59), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 210 TRAMADLAHPATILETRKTAPT 231
T M L+H AT+ ETR PT
Sbjct: 7 TPGMPLLSHTATLTETRSLTPT 28
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 27.7 bits (62), Expect = 5.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 137 LAKEDGIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 182
A EDG + G + LA+ I E+ LKVE+ D + L+ GK+
Sbjct: 15 FADEDGELTGFDVDLAKAIAKELG--LKVEFVEVSFDSLLTALKSGKI 60
>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
uracil phosphoribosyltransferase; Provisional.
Length = 176
Score = 27.0 bits (61), Expect = 7.7
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 200 MQRMSGI--ATLTRAMADLAHPATILETRKTAPTLRLL 235
M + + L RA+ +AH I+E K L L+
Sbjct: 1 MMKKEILDAEALRRALTRIAHE--IIERNKGLDNLVLV 36
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 27.1 bits (60), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 163 VEWSLKDGDHVHKGLQFGKVS 183
+ + K+GDHV KG + G S
Sbjct: 565 ITFVKKEGDHVKKGDELGYFS 585
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 27.0 bits (60), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 127 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 168
+ E+E LAK D +A L ++F+ KV ++LK
Sbjct: 164 SISRELEN--LAKRDPQMAKAILVPIVFYRNGNECKVTFALK 203
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 26.5 bits (58), Expect = 9.8
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 95 PSHPTYDLKGVVKLALAED 113
P ++ +G++++ LAE+
Sbjct: 35 PFDLLHNPQGIIQMGLAEN 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.411
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,466,066
Number of extensions: 1195225
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 39
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)