RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026301
(240 letters)
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 122
Score = 109 bits (274), Expect = 3e-31
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 100 YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 156
D+ V AL ED G D G+ +P D + A + +EDG+ G E +F +
Sbjct: 13 LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72
Query: 157 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205
+ +++ W + DGD +H ++ G A ++ ER LNF+Q +SG
Sbjct: 73 LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTALNFVQTLSG 122
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 115
Score = 108 bits (271), Expect = 7e-31
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 102 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSL 161
+ + L ED DVT +AT+P A + +E G++AG+ +A + +EV +
Sbjct: 10 ARAAIARGLDEDLRYGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTN 69
Query: 162 KV--EWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 205
++DG V G + + ++ AER +LN + +SG
Sbjct: 70 GYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSG 115
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 81.9 bits (202), Expect = 7e-21
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 106 VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAG-IALAEMIFHEVDPSLKVE 164
+ + ED G + D+ + AH L K + ++A I ++ M L +
Sbjct: 8 LMSFVKEDEG-KLDLASFPLR--NTTAGAHLLLKTENVVASGIEVSRMFLE--KMGLLSK 62
Query: 165 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMS 204
++++DG+++ G++ G + +++AER +LN + M
Sbjct: 63 FNVEDGEYLEGTGVIGEIEGNTYKLLVAERTLLNVLSVMF 102
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 47.3 bits (112), Expect = 2e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 206 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 240
+AT TR A+ A I TRK P L +L K AV
Sbjct: 1 VATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 35
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 44.6 bits (105), Expect = 1e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 206 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 240
+A+ R L +L+TRKT P LR K+AV
Sbjct: 1 VASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 37
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 43.6 bits (102), Expect = 4e-06
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 206 IATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 240
IAT T A D A I +TRKT P LR L K+AV
Sbjct: 1 IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 37
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 38.1 bits (88), Expect = 5e-04
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 202 RMSGIATLTRAMADLAHPATILE--TRKTAPTLRLLDKWAV 240
+ SGIAT + A + R P + + A
Sbjct: 1 QASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 41
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 28.6 bits (64), Expect = 0.30
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 130 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG------KVS 183
ME G+ + +D L +++ +G + G +V
Sbjct: 40 MEATVSGPLDTWINFTGLDEVLKLLEGLDVDL---YAIPEGTILFPRDANGLPVPFIRVE 96
Query: 184 GRAHSIVIAERVVLNFMQRMSGI 206
GR + E +L F+ + SGI
Sbjct: 97 GRYCDFGMYETAILGFICQASGI 119
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
[TaxId: 12455]}
Length = 343
Score = 26.1 bits (57), Expect = 3.8
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 154 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 194
FH V PSL L G +H G V ++ R
Sbjct: 42 FHTVTPSLVFLCLLIPG--LHAAFVHGGVPRESYLSTPVTR 80
>d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254 {Thermus
thermophilus [TaxId: 274]}
Length = 130
Score = 25.3 bits (55), Expect = 5.1
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 136 FLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 177
FLA+E G ALA+ ++ ++ V +GL
Sbjct: 38 FLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGL 79
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase
PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Length = 110
Score = 24.4 bits (53), Expect = 7.9
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 165 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 200
+++ +G H ++ G I E +L +
Sbjct: 74 YAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGML 109
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 23.9 bits (52), Expect = 9.9
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 137 LAKEDGIIA-------GIALAEM------IFHEVDPSLKVEWSLKDGDHVHKG 176
A DG +A G A + +D ++ + K GD V KG
Sbjct: 9 TAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKG 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.411
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,359
Number of extensions: 39351
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 17
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)