BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026302
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 33/124 (26%)
Query: 112 LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQSVE 171
LDVR EF + H GAINV SG +N +FL+ V
Sbjct: 36 LDVRTPEEFSQGHACGAINVPYMN-------------------RGASGMSKNTDFLEQVS 76
Query: 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231
S + IIV C +GG RS+ A L+ G+ V + GG W K
Sbjct: 77 SHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAK 122
Query: 232 EELP 235
LP
Sbjct: 123 NGLP 126
>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
pdb|1QXN|B Chain B, Solution Structure Of The 30 Kda Polysulfide-Sulfur
Transferase Homodimer From Wolinella Succinogenes
Length = 137
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229
+S LD + ++V C T +R+ +A L G+K +Y+ EGG+ KW
Sbjct: 75 AKSGLDPEKPVVVFCKTA--------------ARAALAGKTLREYGFKTIYNSEGGMDKW 120
Query: 230 FKEELPEVS 238
+E LP +
Sbjct: 121 LEEGLPSLD 129
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXX 154
++ ++AL+L K + +DVR E E++E H AIN +++ E
Sbjct: 7 IKIEKALKLDK---VIFVDVRTEGEYEEDHILNAINXPLFKN-NEHNEVGTIYKXQGKHE 62
Query: 155 XXXSGTEE-----NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 209
G + +LQ+ E L+ D I++ CA GG S I
Sbjct: 63 AIQKGFDYVSYKLKDIYLQAAELALNYD-NIVIYCARGGXRSGS------------IVNL 109
Query: 210 LLVLNGYKNVYHLEGGLYKWFKEELPE 236
L L NVY LEGG YK ++ + E
Sbjct: 110 LSSLG--VNVYQLEGG-YKAYRNFVLE 133
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 99 EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW 143
E +R +E V+LDVRP F + H G++N+ + W W
Sbjct: 278 ERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGW 321
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235
+D + V C TGG RS IAA LL +G +V + GG W + P
Sbjct: 426 RDGSVCVYCRTGG--------------RSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFP 471
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 95 VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKE 139
V+ + L EN I+D RP A F + H PGA+NV L++E
Sbjct: 154 VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE 209
>pdb|2K0Z|A Chain A, Solution Nmr Structure Of Protein Hp1203 From Helicobacter
Pylori 26695. Northeast Structural Genomics Consortium
(Nesg) Target Pt1ONTARIO CENTER FOR STRUCTURAL
PROTEOMICS TARGET HP1203
Length = 110
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 44/123 (35%)
Query: 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEF 166
N+F+++DVR E++E H P A + + + E+ +F
Sbjct: 15 NDFIVVDVRELDEYEELHLPNATLISV------------------------NDQEKLADF 50
Query: 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226
L KD K+++ C G R+L AA + GY Y+LEG +
Sbjct: 51 LSQ-----HKDKKVLLHCRAG--------------RRALDAAKSMHELGY-TPYYLEGNV 90
Query: 227 YKW 229
Y +
Sbjct: 91 YDF 93
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL 234
D D ++V C G + K AA L+ GY VY ++GG W ++
Sbjct: 56 DFDTPVMVMCYHGNSSKG--------------AAQYLLQQGYDVVYSIDGGFEAWQRQFP 101
Query: 235 PEVS 238
EV+
Sbjct: 102 AEVA 105
>pdb|3D1P|A Chain A, Atomic Resolution Structure Of Uncharacterized Protein
From Saccharomyces Cerevisiae
Length = 139
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINV 131
S E + + + + N V++DVR +E+ H P +INV
Sbjct: 26 SFEDXKRIVGKHDPNVVLVDVREPSEYSIVHIPASINV 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,053,246
Number of Sequences: 62578
Number of extensions: 203756
Number of successful extensions: 366
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 15
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)