Query 026302
Match_columns 240
No_of_seqs 193 out of 1855
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02160 thiosulfate sulfurtra 99.9 5.5E-23 1.2E-27 165.3 11.6 116 91-240 13-130 (136)
2 cd01518 RHOD_YceA Member of th 99.9 5.2E-23 1.1E-27 156.1 9.5 99 94-231 3-101 (101)
3 PRK00162 glpE thiosulfate sulf 99.9 1.3E-22 2.8E-27 155.9 11.6 104 91-239 3-106 (108)
4 cd01533 4RHOD_Repeat_2 Member 99.9 1.5E-22 3.2E-27 155.8 11.8 101 90-233 7-109 (109)
5 cd01527 RHOD_YgaP Member of th 99.9 1.9E-22 4.2E-27 152.2 10.9 98 93-236 2-99 (99)
6 KOG1530 Rhodanese-related sulf 99.9 2.3E-22 5E-27 158.1 10.3 115 90-237 20-135 (136)
7 cd01523 RHOD_Lact_B Member of 99.9 1.1E-21 2.5E-26 148.3 9.9 98 95-230 1-99 (100)
8 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.9E-21 4.1E-26 152.1 9.9 113 95-233 2-122 (122)
9 cd01521 RHOD_PspE2 Member of t 99.9 4.4E-21 9.6E-26 148.0 11.8 101 93-236 8-110 (110)
10 cd01519 RHOD_HSP67B2 Member of 99.9 1.5E-21 3.2E-26 148.6 8.9 102 96-230 2-105 (106)
11 cd01520 RHOD_YbbB Member of th 99.9 5.8E-21 1.3E-25 151.5 11.0 120 95-231 1-126 (128)
12 cd01526 RHOD_ThiF Member of th 99.8 6.2E-21 1.3E-25 149.9 10.5 110 92-236 7-118 (122)
13 cd01528 RHOD_2 Member of the R 99.8 9.4E-21 2E-25 143.7 11.1 96 95-232 2-99 (101)
14 cd01534 4RHOD_Repeat_3 Member 99.8 8.1E-21 1.8E-25 142.6 10.4 92 95-230 1-94 (95)
15 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.1E-20 2.4E-25 141.2 10.6 91 95-230 2-95 (96)
16 cd01449 TST_Repeat_2 Thiosulfa 99.8 3.3E-21 7.2E-26 149.5 8.0 104 95-230 1-117 (118)
17 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 7.7E-21 1.7E-25 157.1 10.6 115 90-236 33-162 (162)
18 cd01447 Polysulfide_ST Polysul 99.8 8.3E-21 1.8E-25 143.4 9.8 102 95-233 1-103 (103)
19 cd01524 RHOD_Pyr_redox Member 99.8 1.9E-20 4.2E-25 139.3 10.4 89 95-230 1-89 (90)
20 cd01525 RHOD_Kc Member of the 99.8 1.8E-20 3.8E-25 142.6 9.6 102 95-230 1-104 (105)
21 PF00581 Rhodanese: Rhodanese- 99.8 4.5E-20 9.7E-25 140.5 11.2 108 96-232 1-113 (113)
22 cd01522 RHOD_1 Member of the R 99.8 1.8E-20 3.8E-25 146.6 8.8 103 95-232 1-105 (117)
23 PRK11493 sseA 3-mercaptopyruva 99.8 3E-20 6.6E-25 165.7 10.7 121 94-239 6-136 (281)
24 PLN02723 3-mercaptopyruvate su 99.8 3E-20 6.4E-25 168.9 10.6 122 93-239 22-152 (320)
25 smart00450 RHOD Rhodanese Homo 99.8 4.6E-20 1E-24 136.4 9.7 97 107-235 3-100 (100)
26 cd01530 Cdc25 Cdc25 phosphatas 99.8 5.9E-20 1.3E-24 144.7 10.1 98 93-230 2-120 (121)
27 cd01529 4RHOD_Repeats Member o 99.8 6.3E-20 1.4E-24 137.9 9.8 87 106-231 10-96 (96)
28 PRK01415 hypothetical protein; 99.8 7.6E-20 1.7E-24 160.3 11.3 135 40-233 79-213 (247)
29 cd01535 4RHOD_Repeat_4 Member 99.8 8.8E-20 1.9E-24 148.2 10.7 95 100-239 2-97 (145)
30 cd01445 TST_Repeats Thiosulfat 99.8 1.1E-19 2.5E-24 146.4 9.6 110 95-230 1-137 (138)
31 PRK09629 bifunctional thiosulf 99.8 1.2E-19 2.5E-24 177.3 11.3 121 94-239 10-130 (610)
32 PLN02723 3-mercaptopyruvate su 99.8 1.6E-19 3.5E-24 164.1 9.1 116 94-239 191-318 (320)
33 cd01532 4RHOD_Repeat_1 Member 99.8 4.2E-19 9.1E-24 132.9 9.6 88 102-231 4-92 (92)
34 cd01531 Acr2p Eukaryotic arsen 99.8 6.7E-19 1.5E-23 136.3 10.6 101 93-232 2-112 (113)
35 PRK11493 sseA 3-mercaptopyruva 99.8 2.1E-19 4.6E-24 160.3 8.8 113 94-239 154-280 (281)
36 COG2897 SseA Rhodanese-related 99.8 3.3E-19 7.2E-24 159.1 9.8 115 94-240 157-284 (285)
37 PRK08762 molybdopterin biosynt 99.8 6.7E-19 1.4E-23 163.2 11.7 104 92-239 2-105 (376)
38 cd00158 RHOD Rhodanese Homolog 99.8 4.7E-19 1E-23 129.3 8.5 88 100-230 2-89 (89)
39 COG0607 PspE Rhodanese-related 99.8 1.1E-18 2.5E-23 132.8 9.8 102 96-240 8-110 (110)
40 cd01443 Cdc25_Acr2p Cdc25 enzy 99.8 2.3E-18 5.1E-23 133.4 10.1 99 93-230 2-112 (113)
41 PRK05320 rhodanese superfamily 99.8 2.9E-18 6.3E-23 151.5 11.3 103 91-232 108-216 (257)
42 PRK00142 putative rhodanese-re 99.8 3.4E-18 7.5E-23 155.0 11.9 131 44-232 82-212 (314)
43 PRK09629 bifunctional thiosulf 99.8 1.8E-18 3.9E-23 169.0 9.6 116 94-239 148-272 (610)
44 COG2897 SseA Rhodanese-related 99.7 6.8E-18 1.5E-22 150.7 10.7 122 93-239 11-139 (285)
45 TIGR02981 phageshock_pspE phag 99.7 1E-17 2.2E-22 128.3 9.8 81 107-231 17-97 (101)
46 PRK10287 thiosulfate:cyanide s 99.7 1.7E-17 3.8E-22 127.7 9.5 81 107-231 19-99 (104)
47 PRK07878 molybdopterin biosynt 99.7 2.4E-17 5.2E-22 153.7 11.5 103 91-236 285-388 (392)
48 TIGR03167 tRNA_sel_U_synt tRNA 99.7 2.1E-17 4.5E-22 149.7 9.8 111 108-238 2-121 (311)
49 PRK07411 hypothetical protein; 99.7 7.8E-17 1.7E-21 150.2 10.9 108 90-238 279-388 (390)
50 PRK11784 tRNA 2-selenouridine 99.7 1E-16 2.2E-21 147.1 10.3 125 96-237 4-134 (345)
51 PRK05597 molybdopterin biosynt 99.7 3E-16 6.6E-21 144.6 10.1 96 91-231 259-354 (355)
52 cd01446 DSP_MapKP N-terminal r 99.7 1.4E-15 3E-20 120.8 11.7 123 94-235 1-129 (132)
53 COG1054 Predicted sulfurtransf 99.6 8.6E-16 1.9E-20 136.2 5.2 164 7-232 50-213 (308)
54 PRK05600 thiamine biosynthesis 99.6 3.1E-15 6.8E-20 138.5 9.0 94 94-227 272-369 (370)
55 KOG1529 Mercaptopyruvate sulfu 99.4 6.7E-13 1.5E-17 117.3 8.3 121 94-239 6-137 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.4 2.4E-12 5.3E-17 123.1 9.3 73 107-224 406-482 (482)
57 KOG3772 M-phase inducer phosph 99.3 6.3E-12 1.4E-16 113.2 6.4 103 90-232 153-276 (325)
58 KOG2017 Molybdopterin synthase 99.1 9E-11 1.9E-15 106.3 6.9 105 93-237 317-424 (427)
59 KOG1529 Mercaptopyruvate sulfu 99.1 4.3E-10 9.3E-15 99.6 8.0 98 104-232 168-276 (286)
60 COG5105 MIH1 Mitotic inducer, 98.3 1E-06 2.2E-11 79.4 6.6 101 90-231 239-357 (427)
61 COG2603 Predicted ATPase [Gene 97.7 4.3E-05 9.2E-10 68.4 4.4 116 99-230 7-127 (334)
62 KOG1717 Dual specificity phosp 96.2 0.0062 1.3E-07 54.2 4.6 120 94-232 5-124 (343)
63 KOG1093 Predicted protein kina 96.1 0.002 4.3E-08 62.5 0.7 103 87-229 616-718 (725)
64 KOG3636 Uncharacterized conser 95.6 0.14 3E-06 48.9 10.9 50 92-141 306-359 (669)
65 PRK00142 putative rhodanese-re 95.4 0.0031 6.8E-08 57.5 -0.9 48 95-144 16-63 (314)
66 PF04273 DUF442: Putative phos 95.1 0.085 1.8E-06 40.9 6.6 26 94-119 14-39 (110)
67 TIGR01244 conserved hypothetic 94.7 0.11 2.4E-06 41.4 6.5 28 93-120 13-40 (135)
68 PF13350 Y_phosphatase3: Tyros 92.5 0.67 1.5E-05 37.8 7.5 113 90-218 25-153 (164)
69 cd00127 DSPc Dual specificity 89.7 1.1 2.5E-05 34.7 6.1 80 106-216 26-109 (139)
70 TIGR03167 tRNA_sel_U_synt tRNA 89.3 0.79 1.7E-05 41.8 5.6 35 92-126 135-172 (311)
71 smart00195 DSPc Dual specifici 85.4 3.9 8.5E-05 31.8 6.9 32 173-217 74-107 (138)
72 PF01451 LMWPc: Low molecular 80.9 1.1 2.4E-05 35.2 2.0 37 180-229 1-41 (138)
73 PLN02727 NAD kinase 80.7 4.6 0.0001 42.0 6.7 129 43-188 206-352 (986)
74 COG3453 Uncharacterized protei 76.0 14 0.0003 29.4 6.7 82 94-188 15-98 (130)
75 COG0062 Uncharacterized conser 69.3 14 0.00031 31.7 5.9 41 170-222 40-82 (203)
76 PF09992 DUF2233: Predicted pe 69.3 4.2 9.1E-05 33.1 2.6 47 173-228 96-142 (170)
77 PRK10126 tyrosine phosphatase; 68.6 5.8 0.00013 31.8 3.3 38 178-229 3-40 (147)
78 PRK11391 etp phosphotyrosine-p 68.3 6.4 0.00014 31.6 3.4 38 178-229 3-40 (144)
79 TIGR00197 yjeF_nterm yjeF N-te 65.5 18 0.00038 30.8 5.8 38 173-222 41-78 (205)
80 PF03853 YjeF_N: YjeF-related 64.2 11 0.00023 31.0 4.1 35 175-221 23-57 (169)
81 TIGR02689 ars_reduc_gluta arse 63.9 11 0.00025 29.2 4.0 37 178-227 1-37 (126)
82 PF14606 Lipase_GDSL_3: GDSL-l 61.4 69 0.0015 26.9 8.5 57 164-224 81-144 (178)
83 smart00226 LMWPc Low molecular 61.2 7.8 0.00017 30.4 2.7 37 180-229 1-37 (140)
84 PF05706 CDKN3: Cyclin-depende 60.6 7.5 0.00016 32.4 2.5 38 166-216 122-160 (168)
85 PLN03050 pyridoxine (pyridoxam 60.2 15 0.00033 32.3 4.5 34 177-222 60-93 (246)
86 PTZ00393 protein tyrosine phos 60.0 12 0.00026 33.0 3.8 39 166-217 159-198 (241)
87 PLN03049 pyridoxine (pyridoxam 59.9 20 0.00044 34.5 5.7 34 177-222 59-92 (462)
88 TIGR00640 acid_CoA_mut_C methy 59.0 32 0.00069 27.3 5.8 58 164-234 43-106 (132)
89 PRK10565 putative carbohydrate 58.9 22 0.00048 34.6 5.8 37 174-222 57-93 (508)
90 PLN02918 pyridoxine (pyridoxam 57.2 23 0.0005 34.9 5.6 34 177-222 135-168 (544)
91 PRK13530 arsenate reductase; P 56.4 20 0.00043 28.3 4.2 36 178-226 4-39 (133)
92 PRK12361 hypothetical protein; 56.0 19 0.0004 35.2 4.8 18 172-189 170-187 (547)
93 COG4822 CbiK Cobalamin biosynt 55.8 27 0.00059 30.6 5.2 48 161-222 118-173 (265)
94 PF00782 DSPc: Dual specificit 55.3 13 0.00028 28.5 3.0 32 173-217 69-102 (133)
95 COG0394 Wzb Protein-tyrosine-p 55.0 14 0.0003 29.6 3.1 38 178-228 3-40 (139)
96 PF02590 SPOUT_MTase: Predicte 53.8 12 0.00026 30.7 2.6 50 168-229 58-110 (155)
97 cd00115 LMWPc Substituted upda 52.2 16 0.00035 28.7 3.1 38 179-229 2-40 (141)
98 cd00079 HELICc Helicase superf 51.5 44 0.00095 24.7 5.4 43 169-226 20-62 (131)
99 COG2519 GCD14 tRNA(1-methylade 49.9 23 0.0005 31.5 3.9 54 155-222 166-219 (256)
100 COG2185 Sbm Methylmalonyl-CoA 48.3 35 0.00075 27.8 4.4 44 173-226 59-102 (143)
101 COG2453 CDC14 Predicted protei 47.7 30 0.00066 28.6 4.2 26 164-189 92-117 (180)
102 cd02071 MM_CoA_mut_B12_BD meth 47.0 66 0.0014 24.7 5.8 50 175-234 48-103 (122)
103 PRK07688 thiamine/molybdopteri 45.9 13 0.00028 34.2 1.9 38 90-128 274-317 (339)
104 PF07755 DUF1611: Protein of u 45.3 51 0.0011 30.1 5.5 47 177-232 111-157 (301)
105 TIGR02691 arsC_pI258_fam arsen 45.0 25 0.00054 27.6 3.1 35 180-227 1-35 (129)
106 PRK00103 rRNA large subunit me 44.7 41 0.0009 27.6 4.5 49 169-229 59-110 (157)
107 PF03610 EIIA-man: PTS system 41.4 78 0.0017 23.9 5.4 17 172-188 52-68 (116)
108 PF01488 Shikimate_DH: Shikima 39.9 44 0.00094 26.2 3.8 37 176-227 11-47 (135)
109 TIGR00537 hemK_rel_arch HemK-r 38.4 43 0.00093 27.2 3.7 50 163-226 119-168 (179)
110 PTZ00242 protein tyrosine phos 38.4 31 0.00067 28.3 2.8 16 174-189 95-110 (166)
111 TIGR01587 cas3_core CRISPR-ass 38.4 47 0.001 30.0 4.3 48 166-227 211-259 (358)
112 COG1576 Uncharacterized conser 37.0 80 0.0017 26.0 4.9 48 168-228 58-108 (155)
113 PRK12550 shikimate 5-dehydroge 34.1 94 0.002 27.7 5.4 37 173-224 118-154 (272)
114 PF14566 PTPlike_phytase: Inos 33.9 41 0.0009 27.0 2.9 27 161-188 109-135 (149)
115 KOG1716 Dual specificity phosp 32.8 67 0.0014 28.7 4.3 32 173-217 151-184 (285)
116 PF02302 PTS_IIB: PTS system, 32.2 60 0.0013 23.0 3.3 31 179-223 1-35 (90)
117 COG2518 Pcm Protein-L-isoaspar 31.3 42 0.00092 29.0 2.6 26 207-232 110-136 (209)
118 PRK11784 tRNA 2-selenouridine 30.6 1.8E+02 0.0039 26.9 6.8 34 94-127 151-187 (345)
119 PRK05298 excinuclease ABC subu 30.4 59 0.0013 32.7 3.8 50 163-227 432-481 (652)
120 PTZ00110 helicase; Provisional 29.0 98 0.0021 30.3 5.0 38 175-227 375-412 (545)
121 PRK09426 methylmalonyl-CoA mut 28.5 1E+02 0.0022 31.6 5.1 52 162-226 621-672 (714)
122 TIGR00246 tRNA_RlmH_YbeA rRNA 28.0 76 0.0017 25.9 3.5 46 170-229 59-107 (153)
123 PF02879 PGM_PMM_II: Phosphogl 28.0 1.2E+02 0.0027 22.1 4.4 31 178-223 22-52 (104)
124 PRK14027 quinate/shikimate deh 27.1 1.4E+02 0.0031 26.6 5.4 46 164-224 112-159 (283)
125 TIGR00631 uvrb excinuclease AB 26.6 72 0.0016 32.2 3.7 51 162-227 427-477 (655)
126 KOG0333 U5 snRNP-like RNA heli 26.3 1E+02 0.0022 30.7 4.4 36 176-226 516-551 (673)
127 PF07879 PHB_acc_N: PHB/PHA ac 26.3 69 0.0015 22.4 2.5 28 92-119 17-45 (64)
128 TIGR03815 CpaE_hom_Actino heli 26.1 3.3E+02 0.0072 24.3 7.7 38 176-223 92-129 (322)
129 TIGR00853 pts-lac PTS system, 25.8 93 0.002 23.1 3.3 37 177-228 3-43 (95)
130 cd05567 PTS_IIB_mannitol PTS_I 25.6 96 0.0021 22.2 3.4 10 179-188 2-11 (87)
131 COG1165 MenD 2-succinyl-6-hydr 25.5 48 0.001 32.8 2.1 72 124-220 28-99 (566)
132 COG0513 SrmB Superfamily II DN 25.4 1.1E+02 0.0025 29.6 4.8 34 179-227 275-308 (513)
133 smart00404 PTPc_motif Protein 24.9 1.6E+02 0.0034 20.8 4.4 14 176-189 38-51 (105)
134 smart00012 PTPc_DSPc Protein t 24.9 1.6E+02 0.0034 20.8 4.4 14 176-189 38-51 (105)
135 COG0777 AccD Acetyl-CoA carbox 24.6 50 0.0011 29.8 1.9 78 151-233 131-218 (294)
136 PRK12549 shikimate 5-dehydroge 24.3 1.6E+02 0.0035 26.2 5.2 47 164-225 112-160 (284)
137 TIGR00614 recQ_fam ATP-depende 23.1 1.2E+02 0.0026 28.9 4.3 38 175-227 224-261 (470)
138 TIGR03372 putres_am_tran putre 22.9 1.3E+02 0.0028 28.8 4.5 54 163-230 119-177 (442)
139 PRK14994 SAM-dependent 16S rib 22.8 4.5E+02 0.0098 23.6 7.8 60 167-236 74-136 (287)
140 TIGR02810 agaZ_gatZ D-tagatose 21.9 2.3E+02 0.005 27.1 5.8 63 163-227 63-127 (420)
141 KOG3425 Uncharacterized conser 21.7 2E+02 0.0043 22.9 4.5 57 172-235 20-85 (128)
142 PRK11192 ATP-dependent RNA hel 21.6 1.2E+02 0.0026 28.3 4.0 37 176-227 244-280 (434)
143 PF04343 DUF488: Protein of un 21.2 76 0.0017 24.3 2.2 20 97-116 2-22 (122)
144 TIGR00342 thiazole biosynthesi 21.1 1.6E+02 0.0035 27.3 4.7 30 104-133 138-169 (371)
145 cd05565 PTS_IIB_lactose PTS_II 21.1 1.1E+02 0.0024 23.0 3.0 36 179-229 2-41 (99)
146 PRK04837 ATP-dependent RNA hel 20.9 1.1E+02 0.0024 28.5 3.6 37 176-227 254-290 (423)
147 cd01132 F1_ATPase_alpha F1 ATP 20.6 3E+02 0.0065 24.7 6.1 63 161-232 110-176 (274)
148 cd05564 PTS_IIB_chitobiose_lic 20.6 1.2E+02 0.0027 22.3 3.1 36 179-229 1-40 (96)
149 cd05563 PTS_IIB_ascorbate PTS_ 20.6 1.3E+02 0.0028 21.2 3.2 10 179-188 1-10 (86)
150 PRK09590 celB cellobiose phosp 20.4 1.2E+02 0.0027 23.0 3.1 35 179-228 3-41 (104)
151 PF13344 Hydrolase_6: Haloacid 20.3 74 0.0016 23.7 1.9 38 164-217 20-57 (101)
152 TIGR01809 Shik-DH-AROM shikima 20.2 1.4E+02 0.0031 26.4 4.0 34 176-224 124-157 (282)
153 PRK04537 ATP-dependent RNA hel 20.2 1.1E+02 0.0025 30.1 3.7 38 175-227 255-292 (572)
154 cd00133 PTS_IIB PTS_IIB: subun 20.2 1.2E+02 0.0026 20.4 2.8 22 179-213 1-22 (84)
155 PLN03137 ATP-dependent DNA hel 20.1 1.6E+02 0.0034 32.0 4.7 37 176-227 679-715 (1195)
No 1
>PLN02160 thiosulfate sulfurtransferase
Probab=99.89 E-value=5.5e-23 Score=165.30 Aligned_cols=116 Identities=36% Similarity=0.558 Sum_probs=95.6
Q ss_pred cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCC--eeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 168 (240)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGA--inip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (240)
.+..|+++++.++++. +.+|||||++.||..|||||| +|+|+..+... ..-..+++..
T Consensus 13 ~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~~ 72 (136)
T PLN02160 13 EVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFLE 72 (136)
T ss_pred eeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHHH
Confidence 4668999999999876 468999999999999999999 89997543210 0011244555
Q ss_pred HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302 169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240 (240)
Q Consensus 169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~ 240 (240)
.+...++++++|||||.+|. ||..++..|...||++|++|+|||.+|.+.|+|+.+.|
T Consensus 73 ~~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 73 QVSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred HHHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 55445688999999999998 99999999999999999999999999999999998874
No 2
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.89 E-value=5.2e-23 Score=156.13 Aligned_cols=99 Identities=30% Similarity=0.444 Sum_probs=83.6
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ 173 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (240)
.|+++++.+++++++++|||||++.||..||||||+|+|+..+.... ..+.++ ..
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~~-~~ 57 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDEN-LD 57 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHhh-hh
Confidence 58999999999877899999999999999999999999998754211 111111 13
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
.+++++|||||++|. ||..++.+|+.+||+||++|+||+.+|.+
T Consensus 58 ~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 58 LLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 478999999999998 99999999999999999999999999963
No 3
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.89 E-value=1.3e-22 Score=155.90 Aligned_cols=104 Identities=28% Similarity=0.465 Sum_probs=91.6
Q ss_pred cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
.++.++++++.+.++.++.+|||||++.||..||||||+|+|+..+... +
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~---------------------------~--- 52 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF---------------------------M--- 52 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH---------------------------H---
Confidence 4568999999999977778999999999999999999999998665321 1
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
..++++++|+|||.+|. +|..++..|+..||+||++|+||+.+|...|+|++..
T Consensus 53 -~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 53 -RQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred -HhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 34688999999999998 8999999999999999999999999999999998753
No 4
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.89 E-value=1.5e-22 Score=155.81 Aligned_cols=101 Identities=30% Similarity=0.420 Sum_probs=85.8
Q ss_pred hcCccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHH
Q 026302 90 KRVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ 168 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 168 (240)
..+..|+++++.++++++ +.+|||||++.||..||||||+|+|+.++... +.
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~---------------------------~~ 59 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLR---------------------------VG 59 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHH---------------------------HH
Confidence 345689999999998765 57899999999999999999999999776432 11
Q ss_pred HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCc-eEEccccHHHHHhCC
Q 026302 169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE 233 (240)
Q Consensus 169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~n-V~~l~GG~~~W~~~g 233 (240)
.+ ..+++++|||||.+|. ||..++..|+..||+| |++|+||+.+|..+|
T Consensus 60 ~l--~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 60 EL--APDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred hc--CCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 22 2367889999999998 9999999999999988 999999999999876
No 5
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.88 E-value=1.9e-22 Score=152.16 Aligned_cols=98 Identities=30% Similarity=0.402 Sum_probs=87.1
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 93 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
..|+++|+.++++.+ .+|||+|++.||..||||||+|+|+..+.... .
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-------------------------------~ 49 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEG-------------------------------L 49 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccc-------------------------------c
Confidence 468999999998875 89999999999999999999999997653210 2
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 236 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv 236 (240)
.++++++|||||.+|. ++..++..|.+.||++|++|+||+.+|...|+|+
T Consensus 50 ~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 50 PLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 4688999999999998 8999999999999999999999999999999985
No 6
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-22 Score=158.10 Aligned_cols=115 Identities=37% Similarity=0.579 Sum_probs=100.0
Q ss_pred hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS 169 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (240)
..+..++.++++.+++.+++++||||.++||.+||||.+||||+.....+ +...+++|.+.
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~-------------------~~l~~~eF~kq 80 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGA-------------------GALKNPEFLKQ 80 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccc-------------------cccCCHHHHHH
Confidence 45668999999999999889999999999999999999999999654332 22346889988
Q ss_pred HHhcCC-CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302 170 VESQLD-KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 237 (240)
Q Consensus 170 ~~~~i~-~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~ 237 (240)
+....+ .++.|||+|.+|. |+..|...|...||+||.+|.|||.+|.+.|+|..
T Consensus 81 vg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 81 VGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred hcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 855554 4559999999998 99999999999999999999999999999998864
No 7
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.86 E-value=1.1e-21 Score=148.34 Aligned_cols=98 Identities=28% Similarity=0.448 Sum_probs=81.8
Q ss_pred ccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302 95 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ 173 (240)
Q Consensus 95 Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (240)
|+++|+.++++++ +++|||||++.||..||||||+|+|+..+...+. +...+....
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~-----------------------~~~~~~~~~ 57 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFL-----------------------EIEEDILDQ 57 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHH-----------------------HhhHHHHhh
Confidence 5788999988764 6899999999999999999999999987654320 001122346
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
++++++|||||.+|. ||..++..|+..||+ +++|.||+.+|.
T Consensus 58 ~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 58 LPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 789999999999998 999999999999998 999999999996
No 8
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.86 E-value=1.9e-21 Score=152.08 Aligned_cols=113 Identities=27% Similarity=0.302 Sum_probs=89.3
Q ss_pred ccHHHHHHHhcCCCeEEEEcCCh-------hhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302 95 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~-------~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (240)
|+++++.+++++++.+|||+|++ .+|..||||||+|+|+.++..... .+.|.+...+++.+++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 71 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLPSPEEFAELL 71 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCCCHHHHHHHH
Confidence 78899999998878899999999 999999999999999987643210 0122223322333333
Q ss_pred HHHHhcCCCCCcEEEEcCCC-CCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302 168 QSVESQLDKDAKIIVACATG-GTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 233 (240)
Q Consensus 168 ~~~~~~i~~~~~IVvyC~~G-~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g 233 (240)
..+ +++++++|||||++| . +|..+++.|+.+||++|++|+||+.+|..+|
T Consensus 72 ~~~--~~~~~~~vv~~c~~g~~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 72 GSL--GISNDDTVVVYDDGGGF--------------FAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHc--CCCCCCEEEEECCCCCc--------------cHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 332 688999999999995 5 8999999999999999999999999999875
No 9
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.86 E-value=4.4e-21 Score=148.03 Aligned_cols=101 Identities=28% Similarity=0.455 Sum_probs=86.7
Q ss_pred ccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 93 RSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 93 ~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
..++++|+.+++..+ +.+|||||++.+|..||||||+|+|+..+... .
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------~ 57 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------A 57 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH------------------------------h
Confidence 379999999998763 58999999999999999999999998775321 0
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 236 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv 236 (240)
...++++++|||||++|.| .+|..++..|+++||+ |++|+||+.+|..+|+|+
T Consensus 58 ~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 58 TAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred hhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 1367899999999998853 2799999999999995 999999999999999985
No 10
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.86 E-value=1.5e-21 Score=148.58 Aligned_cols=102 Identities=32% Similarity=0.439 Sum_probs=82.2
Q ss_pred cHHHHHHHhc-CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh-c
Q 026302 96 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES-Q 173 (240)
Q Consensus 96 s~~el~~~l~-~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~ 173 (240)
+++++.++++ .++.+|||+|++.||..||||||+|+|+..+.+.. .....+|.+.+.. .
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~ 62 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK 62 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence 5788888887 66799999999999999999999999998764321 0111233333311 4
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
++++++|||||.+|. +|..+++.|+.+||+||++|+||+.+|.
T Consensus 63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 578899999999997 9999999999999999999999999996
No 11
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.85 E-value=5.8e-21 Score=151.45 Aligned_cols=120 Identities=32% Similarity=0.414 Sum_probs=84.4
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHH---H-HHhhhhhcccCCCCCCcHHHHHHH
Q 026302 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI---A-RRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~---~-~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
|+++|+.++++ ++.+|||||++.||..||||||+|||+..+......... . +..+...+..+. ....+++.+++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 78 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV-SGKLKRILNEA 78 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hhhHHHHHHHH
Confidence 68899999988 478999999999999999999999999654322100000 0 000000000000 02234555554
Q ss_pred H-hcCCCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 171 E-SQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 171 ~-~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
. .+++++++|||||. +|. ||..+++.|+.+|| +|++|+||+.+|..
T Consensus 79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3 47899999999997 465 99999999999999 59999999999975
No 12
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.85 E-value=6.2e-21 Score=149.92 Aligned_cols=110 Identities=29% Similarity=0.426 Sum_probs=88.9
Q ss_pred CccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 92 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 92 ~~~Is~~el~~~l~~-~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
...|+++++.+++++ .+++|||||++.||..||||||+|+|+..+...... .+.. ...
T Consensus 7 ~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~-~~~ 65 (122)
T cd01526 7 EERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL-QEL 65 (122)
T ss_pred ccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh-hhc
Confidence 457999999999876 578999999999999999999999999886532100 0000 001
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCC-CceEEccccHHHHHhCCCCC
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPE 236 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~-~nV~~l~GG~~~W~~~g~pv 236 (240)
...++++++|||||++|. ||..++..|+..|| ++|++|+||+.+|..+..+.
T Consensus 66 ~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 66 PLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred ccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 124688999999999998 99999999999999 79999999999999887654
No 13
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.85 E-value=9.4e-21 Score=143.69 Aligned_cols=96 Identities=29% Similarity=0.549 Sum_probs=81.5
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
|+++++.++++.+ +.+|||+|++.||..+|||||+|+|+..+... +..+ .
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~~-~ 53 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKEL-D 53 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHHh-c
Confidence 7889999998865 58999999999999999999999999765421 2222 1
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
..+++++||+||++|. +|..++..|.+.||++|++|+||+.+|...
T Consensus 54 ~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 54 SDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred ccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 2257899999999987 999999999999999999999999999764
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.85 E-value=8.1e-21 Score=142.63 Aligned_cols=92 Identities=30% Similarity=0.406 Sum_probs=77.1
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
|+++|+.++++++ +++|||||++.||..||||||+|+|+..+.... ..+
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~---------------------------~~~-- 51 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET---------------------------DHF-- 51 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH---------------------------HHh--
Confidence 5788999988764 578999999999999999999999987654321 011
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
...++++||+||.+|. ||..++..|+.+||+ |++|+||+.+|.
T Consensus 52 ~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 52 APVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred cccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 1135789999999998 899999999999999 999999999996
No 15
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.84 E-value=1.1e-20 Score=141.17 Aligned_cols=91 Identities=32% Similarity=0.467 Sum_probs=80.6
Q ss_pred ccHHHHHHHhcC-CCeEEEEcCChhhhhh--CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302 95 VEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE 171 (240)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDvR~~~ey~~--ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (240)
|+++++.++++. .+++|||||++.||.. ||||||+|+|+..+... .
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~-------------------------------~ 50 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW-------------------------------L 50 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH-------------------------------H
Confidence 788899998876 4689999999999999 99999999999865321 1
Q ss_pred hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
..++++++|||||.+|. +|..++..|+..||++|++|+||+.+|.
T Consensus 51 ~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 51 GDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred hhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 34789999999999887 9999999999999999999999999996
No 16
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.84 E-value=3.3e-21 Score=149.52 Aligned_cols=104 Identities=32% Similarity=0.526 Sum_probs=83.0
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhh-----------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 95 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~ey~~-----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
++++++.+++++++.+|||||++.||.. ||||||+|+|+..+.... +.+. .
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~~----~ 62 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTFK----S 62 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCcC----C
Confidence 5788999998776799999999999987 999999999997654210 1111 1
Q ss_pred HHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 164 PEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 164 ~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
++.+.+... +++++++||+||++|. +|.++++.|+.+||++|++|+||+.+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 63 PEELRALFAALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 222222222 5679999999999987 9999999999999999999999999996
No 17
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.84 E-value=7.7e-21 Score=157.14 Aligned_cols=115 Identities=24% Similarity=0.319 Sum_probs=87.7
Q ss_pred hcCccccHHHHHHHhcCCCeEEEEcCChh----hhhhC---------CCCCCeeechhhHHhhhhHHHHHHHhhhhhccc
Q 026302 90 KRVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 156 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~----ey~~g---------hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~ 156 (240)
..+..|+++|+.+++++++.+|||||++. ||..| |||||+|+|+..... +
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l---------------- 95 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-L---------------- 95 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-C----------------
Confidence 44568999999999988889999999876 46544 999999999632111 0
Q ss_pred CCCCCCcHHHHHHHHh--cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCC
Q 026302 157 FSGTEENPEFLQSVES--QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL 234 (240)
Q Consensus 157 ~~~~~~~~~~~~~~~~--~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~ 234 (240)
.. ...+.|.+.+.+ ..+++++|||||.+|. .+|..+++.|+.+||+||++|+||+.+|..+|+
T Consensus 96 -~~-~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~ 160 (162)
T TIGR03865 96 -AP-AWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGL 160 (162)
T ss_pred -CC-chhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcCC
Confidence 00 001123333322 2379999999999875 279999999999999999999999999999999
Q ss_pred CC
Q 026302 235 PE 236 (240)
Q Consensus 235 pv 236 (240)
|+
T Consensus 161 Pv 162 (162)
T TIGR03865 161 PL 162 (162)
T ss_pred CC
Confidence 86
No 18
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.84 E-value=8.3e-21 Score=143.43 Aligned_cols=102 Identities=26% Similarity=0.384 Sum_probs=81.8
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhh-hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302 95 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ 173 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~ey-~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (240)
|+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.... .+. ..+ ....
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~-~~~-------------------~~~---~~~~ 57 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWA-DPD-------------------SPY---HKPA 57 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhc-Ccc-------------------ccc---cccC
Confidence 57889999888778899999999998 57999999999986543210 000 000 0124
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 233 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g 233 (240)
++++++|||||.+|. +|..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 789999999999987 8999999999999999999999999998765
No 19
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.84 E-value=1.9e-20 Score=139.25 Aligned_cols=89 Identities=37% Similarity=0.576 Sum_probs=77.5
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL 174 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 174 (240)
++++|+.++++ ++.+|||+|++.+|..||||||+|+|+.++... ...+
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~-------------------------------~~~~ 48 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR-------------------------------LNEL 48 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH-------------------------------HHhc
Confidence 46888999884 478899999999999999999999998765321 1246
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
+++++||+||++|. ++..++..|+..|| +|++|+||+.+|.
T Consensus 49 ~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 78899999999987 89999999999999 8999999999996
No 20
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.83 E-value=1.8e-20 Score=142.58 Aligned_cols=102 Identities=21% Similarity=0.372 Sum_probs=78.7
Q ss_pred ccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 95 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 95 Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
|+++|+.++++++ +++|||||++.||..||||||+|+|+..+...... + ...+. ...+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~--------------~---~~~~~-~~~~-- 60 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE--------------L---EQLPT-VPRL-- 60 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc--------------c---ccccc-hHHH--
Confidence 6889999998764 68999999999999999999999999765321000 0 00010 1111
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
...++++||+||.+|. +|..+++.|+.+||++|++|+||+.+|+
T Consensus 61 ~~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 61 ENYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred HhhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 1124789999999997 8999999999999999999999999995
No 21
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.83 E-value=4.5e-20 Score=140.49 Aligned_cols=108 Identities=32% Similarity=0.543 Sum_probs=81.6
Q ss_pred cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCC
Q 026302 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLD 175 (240)
Q Consensus 96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 175 (240)
|++|+.+++++++++|||+|++.+|..||||||+|+|+..+..... ......+.+........++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 65 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEP---------------SLSEDKLDEFLKELGKKID 65 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSS---------------BCHHHHHHHHHHHHTHGST
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccc---------------ccccccccccccccccccc
Confidence 6889999997678999999999999999999999999965410000 0000112333444445679
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH-----HHHCCCCceEEccccHHHHHhC
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~-----L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
++++|||||..|. ++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 9999999998876 66666555 8999999999999999999863
No 22
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.83 E-value=1.8e-20 Score=146.59 Aligned_cols=103 Identities=32% Similarity=0.484 Sum_probs=85.4
Q ss_pred ccHHHHHHHhcC-CCeEEEEcCChhhhh-hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 95 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 95 Is~~el~~~l~~-~~~~lIDvR~~~ey~-~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
|+++++.+++++ ++.+|||||++.||. .||||||+|+|+.++... .....+...+..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~---------------------~~~~~~~~~l~~ 59 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM---------------------EINPNFLAELEE 59 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc---------------------ccCHHHHHHHHh
Confidence 578999999987 478999999999999 999999999999765421 011234444444
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
.++++++|||||.+|. +|..++..|+.+||+||+.|.||+.+|.+.
T Consensus 60 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 60 KVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred hCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 4588999999999997 999999999999999999999999999764
No 23
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.83 E-value=3e-20 Score=165.74 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=94.0
Q ss_pred cccHHHHHHHhcCCCeEEEEcCC----------hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 94 SVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~----------~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
.|+++++.+++++++++|||+|+ +.+|..||||||+|+|+..+..... .+.+.++....+
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~~~~~~~ 75 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMMPRPETF 75 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCCCCHHHH
Confidence 58999999999988899999997 6899999999999999866432110 001111122223
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
.++++++ +++++++|||||.++.. .+.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus 76 ~~~~~~~--Gi~~d~~VVvyc~~~~~-------------~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 76 AVAMREL--GVNQDKHLVVYDEGNLF-------------SAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred HHHHHHc--CCCCCCEEEEECCCCCc-------------hHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 3344443 68999999999998762 5778999999999999999999999999999999875
No 24
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=3e-20 Score=168.89 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=96.3
Q ss_pred ccccHHHHHHHhcCCCeEEEEcC--------C-hhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 93 RSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR--------~-~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
..|++++|.+++++++++|||+| . ..+|..||||||+|+++..+..... ...++++..+.+
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~----------~~~~~lp~~~~~ 91 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTT----------DLPHMLPSEEAF 91 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCC----------CcCCCCCCHHHH
Confidence 36999999999988889999996 3 3789999999999999876543210 011233333344
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
.+++.++ +++++++|||||..|. ..+.++++.|+.+||+||++|+||+.+|.++|+|++++
T Consensus 92 ~~~l~~~--Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 92 AAAVSAL--GIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred HHHHHHc--CCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 4555544 6889999999999886 26788999999999999999999999999999999864
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.82 E-value=4.6e-20 Score=136.40 Aligned_cols=97 Identities=39% Similarity=0.665 Sum_probs=77.3
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH-HhcCCCCCcEEEEcC
Q 026302 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV-ESQLDKDAKIIVACA 185 (240)
Q Consensus 107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~IVvyC~ 185 (240)
++++|||+|++.||..||||||+|+|+..+........ ...+.... ...++++++|||||.
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~iv~~c~ 64 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELD------------------ILEFEELLKRLGLDKDKPVVVYCR 64 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcC------------------HHHHHHHHHHcCCCCCCeEEEEeC
Confidence 47899999999999999999999999987654321000 00111111 136789999999998
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCC
Q 026302 186 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 235 (240)
Q Consensus 186 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~p 235 (240)
+|. ++..+++.|+..||++|++|+||+.+|...|.|
T Consensus 65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 887 999999999999999999999999999999875
No 26
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.82 E-value=5.9e-20 Score=144.74 Aligned_cols=98 Identities=26% Similarity=0.401 Sum_probs=80.2
Q ss_pred ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechh-hHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302 93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIY-RLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (240)
Q Consensus 93 ~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~-~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (240)
..|+++++.++++++ +++|||||++.||..||||||+|+|+. .+...+
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~------------------------- 56 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF------------------------- 56 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence 469999999998763 689999999999999999999999986 343221
Q ss_pred HHHH-HHhcCCCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHC------------CCCceEEccccHHHHH
Q 026302 166 FLQS-VESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF 230 (240)
Q Consensus 166 ~~~~-~~~~i~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------G~~nV~~l~GG~~~W~ 230 (240)
.+. ....++++++|||||. +|. ||..+++.|+.. ||++|++|+||+.+|.
T Consensus 57 -~~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 57 -LDKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -HHhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 000 0014789999999997 887 999999999984 9999999999999984
No 27
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.82 E-value=6.3e-20 Score=137.91 Aligned_cols=87 Identities=28% Similarity=0.408 Sum_probs=71.9
Q ss_pred CCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcC
Q 026302 106 ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACA 185 (240)
Q Consensus 106 ~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~ 185 (240)
+++++|||||++.||..||||||+|+|+..+... .+.++.+ ..++++++|||||.
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~~-~~~~~~~~ivv~c~ 64 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQAL-EAPGRATRYVLTCD 64 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHHh-hcCCCCCCEEEEeC
Confidence 4578999999999999999999999998765321 1112222 34688999999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 186 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 186 ~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
+|. ++..++..|+..||+||++|+||+.+|.+
T Consensus 65 ~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 65 GSL--------------LARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred ChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 987 89999999999999999999999999963
No 28
>PRK01415 hypothetical protein; Validated
Probab=99.82 E-value=7.6e-20 Score=160.31 Aligned_cols=135 Identities=24% Similarity=0.340 Sum_probs=109.3
Q ss_pred EeecCcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHHHhhhcCccccHHHHHHHhcCCCeEEEEcCChhh
Q 026302 40 CLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAE 119 (240)
Q Consensus 40 ~~~~rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~e 119 (240)
+.....+..++.|+++..++.|+.- ..|... ....|+++++.+++++++++|||||++.|
T Consensus 79 ~~~~~~F~~l~vr~k~eiV~~g~~~----~~~~~~----------------~g~~i~p~e~~~ll~~~~~vvIDVRn~~E 138 (247)
T PRK01415 79 YSDVHPFQKLKVRLKKEIVAMNVDD----LNVDLF----------------KGEYIEPKDWDEFITKQDVIVIDTRNDYE 138 (247)
T ss_pred cccCCCCCccEEEeeceEEecCCCC----CCcccc----------------CccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence 3455678889999999999999842 111111 12479999999999988999999999999
Q ss_pred hhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCc
Q 026302 120 FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEG 199 (240)
Q Consensus 120 y~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~ 199 (240)
|..||||||+|+|+..+.+. ++.++.. ..++++++|++||.+|.
T Consensus 139 ~~~Ghi~gAinip~~~f~e~------------------------~~~~~~~-~~~~k~k~Iv~yCtgGi----------- 182 (247)
T PRK01415 139 VEVGTFKSAINPNTKTFKQF------------------------PAWVQQN-QELLKGKKIAMVCTGGI----------- 182 (247)
T ss_pred HhcCCcCCCCCCChHHHhhh------------------------HHHHhhh-hhhcCCCeEEEECCCCh-----------
Confidence 99999999999998776431 2222222 35689999999999998
Q ss_pred hhhHHHHHHHHHHHCCCCceEEccccHHHHHhCC
Q 026302 200 QQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE 233 (240)
Q Consensus 200 ~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g 233 (240)
||..++..|++.||++|++|.||+.+|.+..
T Consensus 183 ---Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 183 ---RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred ---HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 9999999999999999999999999999764
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.82 E-value=8.8e-20 Score=148.21 Aligned_cols=95 Identities=26% Similarity=0.346 Sum_probs=80.7
Q ss_pred HHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCC
Q 026302 100 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDA 178 (240)
Q Consensus 100 l~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (240)
+.+++.++ +++|||||++.+|..||||||+|+|...+.... ..++++.
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~l-------------------------------~~l~~~~ 50 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQAL-------------------------------EKLPAAE 50 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHHH-------------------------------HhcCCCC
Confidence 34455443 589999999999999999999999986654321 3466789
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
+|||||.+|. +|..++..|+..||++|++|+||+.+|...|+|++++
T Consensus 51 ~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 51 RYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred CEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence 9999999986 8999999999999999999999999999999999864
No 30
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.81 E-value=1.1e-19 Score=146.36 Aligned_cols=110 Identities=23% Similarity=0.337 Sum_probs=83.9
Q ss_pred ccHHHHHHHhc----CCCeEEEEcCCh--------hhhhh------------CCCCCCeeechhhHHhhhhHHHHHHHhh
Q 026302 95 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA 150 (240)
Q Consensus 95 Is~~el~~~l~----~~~~~lIDvR~~--------~ey~~------------ghIpGAinip~~~l~~~~~~~~~~~~~~ 150 (240)
|+++|+.+.++ +++++|||+|.. .+|.. ||||||+|+|+..+.... .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~-~-------- 71 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA-G-------- 71 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC-C--------
Confidence 57899999988 457999999987 88998 999999999987653210 0
Q ss_pred hhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC---CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT---GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~---G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
.+.+.++...++.+++.++ +++++++|||||.+ |. .|.++++.|+.+|++||++|+||+.
T Consensus 72 -~~~~~~p~~~~~~~~~~~~--GI~~~~~vVvY~~~~~~g~--------------~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 72 -FEESMEPSEAEFAAMFEAK--GIDLDKHLIATDGDDLGGF--------------TACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred -CCCCCCCCHHHHHHHHHHc--CCCCCCeEEEECCCCCcch--------------HHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 0112222222334444443 78999999999986 44 8999999999999999999999999
Q ss_pred HHH
Q 026302 228 KWF 230 (240)
Q Consensus 228 ~W~ 230 (240)
+|+
T Consensus 135 ~W~ 137 (138)
T cd01445 135 EWF 137 (138)
T ss_pred Hhh
Confidence 996
No 31
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.81 E-value=1.2e-19 Score=177.32 Aligned_cols=121 Identities=21% Similarity=0.296 Sum_probs=98.2
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ 173 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (240)
.|+++||.+++++++++|||+|++.+|..||||||+|+|++.+.... -...++++...++.+.+.++ +
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~----------~~~~~~lp~~~~l~~~l~~l--G 77 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK----------PPAPGLLPDTADLEQLFGEL--G 77 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC----------CCCCCCCCCHHHHHHHHHHc--C
Confidence 59999999999988899999999999999999999999986532110 01123333333445555554 6
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
++++++|||||+.|. .+|.++++.|+.+||++|++|+||+.+|..+|+|++++
T Consensus 78 I~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~ 130 (610)
T PRK09629 78 HNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD 130 (610)
T ss_pred CCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence 899999999999875 27889999999999999999999999999999999765
No 32
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.80 E-value=1.6e-19 Score=164.09 Aligned_cols=116 Identities=20% Similarity=0.312 Sum_probs=92.5
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhh-----------hhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey-----------~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (240)
.++.+++.+.+..++++|||+|++.|| ..||||||+|+|+..+.+. .+.+...++
T Consensus 191 ~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~--------------~~~~~~~~e 256 (320)
T PLN02723 191 VWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDS--------------SQTLLPAEE 256 (320)
T ss_pred eecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCC--------------CCCCCCHHH
Confidence 478999999998778899999999988 4699999999999765432 122222222
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccC
Q 026302 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE 239 (240)
Q Consensus 163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~ 239 (240)
+.+.+.+ .+++++++||+||++|. +|..+++.|+.+||+||++|+|||.+|... .+|++++
T Consensus 257 l~~~~~~--~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 257 LKKRFEQ--EGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred HHHHHHh--cCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 2222222 26899999999999997 999999999999999999999999999976 6799875
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=4.2e-19 Score=132.86 Aligned_cols=88 Identities=33% Similarity=0.457 Sum_probs=71.0
Q ss_pred HHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC-CCCCcE
Q 026302 102 RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL-DKDAKI 180 (240)
Q Consensus 102 ~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i-~~~~~I 180 (240)
.++++++++|||+|++.||..||||||+|+|+..+.... . ..+ +++++|
T Consensus 4 ~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-----------------------------~-~~~~~~~~~i 53 (92)
T cd01532 4 ALLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA-----------------------------W-VRIPRRDTPI 53 (92)
T ss_pred HhhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh-----------------------------H-hhCCCCCCeE
Confidence 345566899999999999999999999999987653210 0 123 458899
Q ss_pred EEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 181 IVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 181 VvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
||||.+|.+ ..|..++..|+..||++|++|+||+.+|.+
T Consensus 54 vl~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 54 VVYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred EEEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 999999872 127899999999999999999999999963
No 34
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.79 E-value=6.7e-19 Score=136.32 Aligned_cols=101 Identities=21% Similarity=0.341 Sum_probs=79.0
Q ss_pred ccccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 93 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 93 ~~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
+.|+++++.+++.. ++.+|||||++ ||..||||||+|+|+..+.... .++.+..
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~~ 57 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQLL 57 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHHH
Confidence 57899999999876 35789999999 9999999999999998765322 2222222
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--------CCCCceEEccccHHHHHhC
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--------~G~~nV~~l~GG~~~W~~~ 232 (240)
..+++++|||||..++. |+..++..|.+ .||.||++|+||+.+|.+.
T Consensus 58 --~~~~~~~iv~yC~~~~~-------------r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 58 --SGSKKDTVVFHCALSQV-------------RGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred --hcCCCCeEEEEeecCCc-------------chHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 34778899999984431 78888777643 4999999999999999864
No 35
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.79 E-value=2.1e-19 Score=160.30 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=89.8
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCC
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 162 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (240)
.++.+++...++.++++|||+|++.||. .||||||+|+|+..+.+. +.+ .
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~---------------~~~----~ 214 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------GEL----K 214 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC---------------CCc----C
Confidence 3566777777776678999999999995 699999999999876431 011 1
Q ss_pred cHHHHHHHH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh-CCCCCccC
Q 026302 163 NPEFLQSVE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE 239 (240)
Q Consensus 163 ~~~~~~~~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~-~g~pv~~~ 239 (240)
.++-++++. .+++++++||+||++|. +|..+++.|+.+||+||++|+|||.+|.. .++|++++
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~--------------~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV--------------TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 122222221 36899999999999998 99999999999999999999999999998 69999876
No 36
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.3e-19 Score=159.08 Aligned_cols=115 Identities=25% Similarity=0.412 Sum_probs=97.5
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhh----------CCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~----------ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
.++.++.+..++.+..+|||+|++++|.. ||||||+|+|+..+.++- +. ...
T Consensus 157 ~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~--------------~~----~~~ 218 (285)
T COG2897 157 VVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDG--------------GL----FKS 218 (285)
T ss_pred cCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCC--------------Cc----cCc
Confidence 57888888888888899999999999998 999999999999886521 11 233
Q ss_pred HHHHHHHH--hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccCC
Q 026302 164 PEFLQSVE--SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE 240 (240)
Q Consensus 164 ~~~~~~~~--~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~~ 240 (240)
++.++.+. .+++++++||+||.+|. +|+..+..|+.+|+.++++|+|+|.+|... +.||++++
T Consensus 219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~--------------~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 219 PEEIARLYADAGIDPDKEVIVYCGSGV--------------RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcCCch--------------HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 45555544 47999999999999998 999999999999998889999999999986 56999885
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.79 E-value=6.7e-19 Score=163.20 Aligned_cols=104 Identities=29% Similarity=0.399 Sum_probs=90.2
Q ss_pred CccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE 171 (240)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (240)
+..|+++++.+++++ +.+|||||++.||..||||||+|+|+..+.... ..+
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------------------------~~~- 52 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRI---------------------------ETH- 52 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHH---------------------------hhh-
Confidence 457999999999976 589999999999999999999999987654221 111
Q ss_pred hcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 172 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 172 ~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
..+++++|||||++|. +|..+++.|+..||+||++|+||+.+|.+.|+|++..
T Consensus 53 -~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 53 -LPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred -cCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 2478999999999997 9999999999999999999999999999999998764
No 38
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.79 E-value=4.7e-19 Score=129.30 Aligned_cols=88 Identities=42% Similarity=0.638 Sum_probs=75.6
Q ss_pred HHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCc
Q 026302 100 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAK 179 (240)
Q Consensus 100 l~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 179 (240)
+..+++.++.+|||+|++.||..||||||+|+|+..+.... ....++++++
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 52 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA-----------------------------ALLELDKDKP 52 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH-----------------------------HhhccCCCCe
Confidence 34555566899999999999999999999999998765421 1136789999
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHH
Q 026302 180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~ 230 (240)
|||||..|. +|..++..|+..||++|++|+||+.+|.
T Consensus 53 vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999999987 9999999999999999999999999994
No 39
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=132.81 Aligned_cols=102 Identities=39% Similarity=0.592 Sum_probs=85.2
Q ss_pred cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCC-CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQL 174 (240)
Q Consensus 96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpG-Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i 174 (240)
.......+...++.+|||||++.||..+|||| ++|+|+.++..... .. .+
T Consensus 8 ~~~~~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~---------------------------~~--~~ 58 (110)
T COG0607 8 SEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN---------------------------LL--EL 58 (110)
T ss_pred CHHHHHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc---------------------------cc--cc
Confidence 33444444555689999999999999999999 99999988754310 00 05
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccCC
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 240 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~~ 240 (240)
+++++|||||.+|. ||..++..|+++||++++.+.||+.+|...++|++.++
T Consensus 59 ~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~~ 110 (110)
T COG0607 59 PDDDPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110 (110)
T ss_pred CCCCeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccCC
Confidence 78999999999999 99999999999999988999999999999999998753
No 40
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=2.3e-18 Score=133.37 Aligned_cols=99 Identities=23% Similarity=0.448 Sum_probs=74.7
Q ss_pred ccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302 93 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166 (240)
Q Consensus 93 ~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (240)
+.|++++++++++++ +.+|||||++ ||..||||||+|+|+..+.... ++.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-----------------------~~~ 57 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-----------------------PQV 57 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-----------------------HHH
Confidence 468999999999875 5889999999 9999999999999998754321 112
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHH----HCCC--CceEEccccHHHHH
Q 026302 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGY--KNVYHLEGGLYKWF 230 (240)
Q Consensus 167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~----~~G~--~nV~~l~GG~~~W~ 230 (240)
+..+ ..++..+||+||.+++. |+..++.+|. ..|| .++++|+||+.+|.
T Consensus 58 ~~~~--~~~~~~~iv~~C~~~g~-------------rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 58 YALF--SLAGVKLAIFYCGSSQG-------------RGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHHh--hhcCCCEEEEECCCCCc-------------ccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 2221 12456789999997532 7777766544 4575 68999999999996
No 41
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.76 E-value=2.9e-18 Score=151.54 Aligned_cols=103 Identities=32% Similarity=0.489 Sum_probs=84.7
Q ss_pred cCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302 91 RVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164 (240)
Q Consensus 91 ~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (240)
....|+++++.+++++. +.+|||||++.||+.||||||+|+|+.++.+ + +
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~-----------------------~ 163 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F-----------------------P 163 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------H
Confidence 34679999999988652 4799999999999999999999999977643 2 1
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 165 EFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 165 ~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
..+......+ ++++||+||.+|. ||..|+..|++.||+||++|.||+.+|.++
T Consensus 164 ~~l~~~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 164 EALAAHRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHHhhhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 1122222233 7899999999998 999999999999999999999999999875
No 42
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.76 E-value=3.4e-18 Score=155.05 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=100.9
Q ss_pred CcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHHHhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhC
Q 026302 44 RSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRELLLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA 123 (240)
Q Consensus 44 rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~g 123 (240)
..+..++.++.+..+.-|+... ..+.. .....|+++++.+++++++++|||||++.||..|
T Consensus 82 ~~f~~l~~~~~~eLv~~G~d~~---v~~~~----------------~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~G 142 (314)
T PRK00142 82 HAFPRLSVKVRKEIVALGLDDD---IDPLE----------------NVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIG 142 (314)
T ss_pred CCcccceeeeeeeeeecCCCCC---CCccc----------------cCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcC
Confidence 4455566667777777776410 00000 2345799999999998888999999999999999
Q ss_pred CCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhH
Q 026302 124 HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 203 (240)
Q Consensus 124 hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r 203 (240)
|||||+|+|+..+.+. +..+.+. ....++++||+||.+|. |
T Consensus 143 hI~GAi~ip~~~~~~~------------------------~~~l~~~-~~~~kdk~IvvyC~~G~--------------R 183 (314)
T PRK00142 143 HFENAIEPDIETFREF------------------------PPWVEEN-LDPLKDKKVVMYCTGGI--------------R 183 (314)
T ss_pred cCCCCEeCCHHHhhhh------------------------HHHHHHh-cCCCCcCeEEEECCCCc--------------H
Confidence 9999999999876432 1111111 13568899999999998 9
Q ss_pred HHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 204 SLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 204 s~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
|..++.+|+..||+||++|+||+.+|.+.
T Consensus 184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 184 CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 99999999999999999999999999875
No 43
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.76 E-value=1.8e-18 Score=169.01 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=93.5
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhh--------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~--------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (240)
.++.+++.+.+++++++|||+|+++||. .||||||+|+|+..+... .+.+...+++.+
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~--------------~~~lk~~~el~~ 213 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDK--------------ARNLRIRQDMPE 213 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCC--------------CCCCCCHHHHHH
Confidence 6899999999988788999999999995 799999999998765432 112222223334
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC-CCCCccC
Q 026302 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE 239 (240)
Q Consensus 166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~-g~pv~~~ 239 (240)
+++++ +++++++||+||++|. +|..+++.|+.+||+||++|+|||.+|... ++|+++.
T Consensus 214 ~~~~~--Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 214 ILRDL--GITPDKEVITHCQTHH--------------RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred HHHHc--CCCCCCCEEEECCCCh--------------HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 44333 6899999999999997 999999999999999999999999999875 7898753
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.8e-18 Score=150.67 Aligned_cols=122 Identities=24% Similarity=0.295 Sum_probs=101.5
Q ss_pred ccccHHHHHHHhcCC-----CeEEEEcCCh--hhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHH
Q 026302 93 RSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE 165 (240)
Q Consensus 93 ~~Is~~el~~~l~~~-----~~~lIDvR~~--~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (240)
..|++++|.+.|..+ +..++++++. .+|..||||||++++++.+..... ...++++..+.+.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~----------~~~~~lp~~e~fa~ 80 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV----------PLPHMLPSPEQFAK 80 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC----------CCCCCCCCHHHHHH
Confidence 479999999999866 5666666665 899999999999999988754321 12456666666777
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
.+.++ +|..+.+||+|++.+.. .|.++++.|+.+|++||++|+||+.+|.++|+|++++
T Consensus 81 ~~~~~--GI~~d~tVVvYdd~~~~-------------~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~ 139 (285)
T COG2897 81 LLGEL--GIRNDDTVVVYDDGGGF-------------FAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE 139 (285)
T ss_pred HHHHc--CCCCCCEEEEECCCCCe-------------ehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence 77766 89999999999988873 8999999999999999999999999999999999875
No 45
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.74 E-value=1e-17 Score=128.30 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=68.8
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC
Q 026302 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT 186 (240)
Q Consensus 107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~ 186 (240)
....+||+|++.||..||||||+|+|+.++...+ ..+ ..+++++|||||.+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l---------------------------~~~--~~~~~~~vvlyC~~ 67 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI---------------------------ATA--VPDKNDTVKLYCNA 67 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH---------------------------HHh--CCCCCCeEEEEeCC
Confidence 3578999999999999999999999998764322 111 34678899999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 187 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 187 G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
|. +|..++..|+++||++|.++ ||+.+|.-
T Consensus 68 G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 68 GR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred CH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 98 99999999999999999985 99999974
No 46
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.73 E-value=1.7e-17 Score=127.66 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=68.1
Q ss_pred CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCC
Q 026302 107 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACAT 186 (240)
Q Consensus 107 ~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~ 186 (240)
.+-+|||+|++.||..||||||+|+|+.++...+ +.+ ..+++++||+||++
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l---------------------------~~l--~~~~~~~IVlyC~~ 69 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERI---------------------------ATA--VPDKNDTVKLYCNA 69 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHHH---------------------------Hhc--CCCCCCeEEEEeCC
Confidence 3567999999999999999999999997664321 111 34677899999999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 187 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 187 G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
|. +|..++..|.++||++|++ .||+.+|.-
T Consensus 70 G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 70 GR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred Ch--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 97 9999999999999999987 699999974
No 47
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.72 E-value=2.4e-17 Score=153.69 Aligned_cols=103 Identities=26% Similarity=0.433 Sum_probs=88.7
Q ss_pred cCccccHHHHHHHhcCC-CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHH
Q 026302 91 RVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQS 169 (240)
Q Consensus 91 ~~~~Is~~el~~~l~~~-~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 169 (240)
....|+++|+.++++++ +++|||||++.||..||||||+|+|+..+.... .
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~----------------------------~ 336 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE----------------------------A 336 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------H
Confidence 45689999999998764 578999999999999999999999998764311 1
Q ss_pred HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCC
Q 026302 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE 236 (240)
Q Consensus 170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv 236 (240)
...++++++|||||++|. +|..++..|++.||++|++|+||+.+|..++.|.
T Consensus 337 -~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~~ 388 (392)
T PRK07878 337 -LAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPS 388 (392)
T ss_pred -HhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCCC
Confidence 135789999999999998 9999999999999999999999999999886653
No 48
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.72 E-value=2.1e-17 Score=149.72 Aligned_cols=111 Identities=26% Similarity=0.314 Sum_probs=83.0
Q ss_pred CeEEEEcCChhhhhhCCCCCCeeechhhHHhhh--------hHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCc
Q 026302 108 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAK 179 (240)
Q Consensus 108 ~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 179 (240)
+.+|||||++.||..||||||+|+|+.+..++- .+-..+.+.++.+.+ ..++++++++....+++.+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~-----~~l~~~i~~~~~~~~~~~~ 76 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVS-----PNLAAHVEQWRAFADGPPQ 76 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhh-----HHHHHHHHHHHhhcCCCCc
Confidence 468999999999999999999999996544321 111223333333332 2445567777566677777
Q ss_pred EEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302 180 IIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 238 (240)
Q Consensus 180 IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~ 238 (240)
|||||. +|. ||..++++|+.+|| +|++|+||+.+|...+.+...
T Consensus 77 vvvyC~~gG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~ 121 (311)
T TIGR03167 77 PLLYCWRGGM--------------RSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLE 121 (311)
T ss_pred EEEEECCCCh--------------HHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhh
Confidence 999996 555 99999999999999 699999999999998876543
No 49
>PRK07411 hypothetical protein; Validated
Probab=99.70 E-value=7.8e-17 Score=150.17 Aligned_cols=108 Identities=27% Similarity=0.443 Sum_probs=88.9
Q ss_pred hcCccccHHHHHHHhcCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHH
Q 026302 90 KRVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 167 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (240)
..+..|+++|+.++++.+ +++|||||++.||..||||||+|+|+.++.... ..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~-------------------------~~ 333 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP-------------------------GV 333 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc-------------------------ch
Confidence 445689999999998754 579999999999999999999999998764311 01
Q ss_pred HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCcc
Q 026302 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS 238 (240)
Q Consensus 168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~ 238 (240)
+++ ..++++++|||||.+|. ||..++..|+++||++ +.|+||+.+|.++..|..+
T Consensus 334 ~~l-~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p 388 (390)
T PRK07411 334 EKV-KELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP 388 (390)
T ss_pred HHH-hhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCCCC
Confidence 122 34678899999999998 9999999999999985 5799999999998777643
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.69 E-value=1e-16 Score=147.05 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=83.7
Q ss_pred cHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHH----HHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302 96 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD----IARRAAFAFFGIFSGTEENPEFLQSVE 171 (240)
Q Consensus 96 s~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (240)
+..++.+++.+ +.+|||||++.||..||||||+|+|+.+..++....+ .....+...++.+. ....++.+.++.
T Consensus 4 ~~~~~~~~~~~-~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv-~~~l~~~~~~~~ 81 (345)
T PRK11784 4 DAQDFRALFLN-DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALV-AGNIAAHREEAW 81 (345)
T ss_pred cHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhc-chhHHHHHHHHH
Confidence 45666666554 7899999999999999999999999976543211000 00001111111111 122344444332
Q ss_pred hcC-CCCCcEEEEcC-CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCc
Q 026302 172 SQL-DKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 237 (240)
Q Consensus 172 ~~i-~~~~~IVvyC~-~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~ 237 (240)
... .++++|||||. +|. ||..++++|..+|| +|++|+||+.+|...+++..
T Consensus 82 ~~~~~~~~~ivvyC~rgG~--------------RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~ 134 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGL--------------RSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTL 134 (345)
T ss_pred HhcccCCCeEEEEECCCCh--------------HHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHH
Confidence 333 38899999996 454 99999999999999 59999999999998876543
No 51
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.66 E-value=3e-16 Score=144.56 Aligned_cols=96 Identities=26% Similarity=0.446 Sum_probs=81.2
Q ss_pred cCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 91 RVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 91 ~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
....++++++.+... +.+|||||++.||..||||||+|+|+.++...+..
T Consensus 259 ~~~~i~~~~~~~~~~--~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~~---------------------------- 308 (355)
T PRK05597 259 FGEVLDVPRVSALPD--GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANP---------------------------- 308 (355)
T ss_pred cccccCHHHHHhccC--CCEEEECCCHHHHccCcCCCCEEeCHHHhhhcccc----------------------------
Confidence 345788888885543 57999999999999999999999999876543210
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHh
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~ 231 (240)
..++++++||+||.+|. +|..+++.|+..||+||++|+||+.+|.+
T Consensus 309 -~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 309 -PSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred -ccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 13678899999999997 99999999999999999999999999975
No 52
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.65 E-value=1.4e-15 Score=120.83 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=83.0
Q ss_pred cccHHHHHHHhcC--CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccC--CCCCCcHHHHHH
Q 026302 94 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF--SGTEENPEFLQS 169 (240)
Q Consensus 94 ~Is~~el~~~l~~--~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~ 169 (240)
.|+++++.+++++ ++.+|||||++.+|..||||||+|+|+..+..+... .+.. ......++..+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 69 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQ-----------GGKILLQQLLSCPEDRDR 69 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhc-----------ccchhhhhhcCCHHHHHH
Confidence 3789999999975 478999999999999999999999999875432100 0000 001112233333
Q ss_pred HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH--CCCCceEEccccHHHHHhCCCC
Q 026302 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKEELP 235 (240)
Q Consensus 170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~--~G~~nV~~l~GG~~~W~~~g~p 235 (240)
+.. . ++.+|||||..+..+ + ......++..++..|.. .|+.+|++|+||+.+|... +|
T Consensus 70 l~~-~-~~~~VVvYd~~~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~-~p 129 (132)
T cd01446 70 LRR-G-ESLAVVVYDESSSDR----E-RLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE-FP 129 (132)
T ss_pred Hhc-C-CCCeEEEEeCCCcch----h-hccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh-Cc
Confidence 322 2 778999999988621 0 00011257777788877 4778899999999999764 44
No 53
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.59 E-value=8.6e-16 Score=136.24 Aligned_cols=164 Identities=24% Similarity=0.320 Sum_probs=123.4
Q ss_pred cccccCCccccCcCCCCCCcccCCCCCCCCceeEeecCcchhhhhccccCCCCcceeeccCCCCCCCCCCchhhHHHHHH
Q 026302 7 VSQLHSSLSSLYPNYRSSPLILAPKTNQDTTICCLTVRSFTFSRRRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKREL 86 (240)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (240)
|+.+.....-+..++. ..|+|..- ..+..+....++..++.|+++..++.|+.- ...|...
T Consensus 50 vsG~~e~~~~~~~~l~---a~~~f~~l-~~K~s~~~~~pF~r~kVk~kkEIV~lg~~d---dv~p~~~------------ 110 (308)
T COG1054 50 VSGSAEAIEAYMAWLR---ADPGFADL-RFKISEADEKPFWRLKVKLKKEIVALGVED---DVDPLEN------------ 110 (308)
T ss_pred EecCHHHHHHHHHHHH---hCcccccc-eeeeccccCCCcceEEEeehhhheecCCCC---CcCcccc------------
Confidence 3334444444555555 33445442 234444566889999999999999999863 1111111
Q ss_pred HhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302 87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166 (240)
Q Consensus 87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (240)
.-.+|+|+++.+++.++++++||+|...||+.||..||++.+...+.+ +|..
T Consensus 111 ----vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFre------------------------fP~~ 162 (308)
T COG1054 111 ----VGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFRE------------------------FPAW 162 (308)
T ss_pred ----ccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhh------------------------hHHH
Confidence 123799999999999999999999999999999999999999988764 3445
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
+++.. ..-++++|+.||.+|. |+..+..+|...||++|++|+||+..+.+.
T Consensus 163 v~~~~-~~~~~KkVvmyCTGGI--------------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 163 VEENL-DLLKDKKVVMYCTGGI--------------RCEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred HHHHH-HhccCCcEEEEcCCce--------------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 55543 3345569999999999 999999999999999999999999887654
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.59 E-value=3.1e-15 Score=138.54 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=78.2
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCC---CCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHH
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSV 170 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIp---GAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (240)
.++++++.+++++++.+|||||++.||..|||| ||+|||+.++.+.. ++..++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~~l 327 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILHAL 327 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhhhc
Confidence 799999999998877899999999999999998 59999998874311 111222
Q ss_pred HhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCc-eEEccccHH
Q 026302 171 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY 227 (240)
Q Consensus 171 ~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~n-V~~l~GG~~ 227 (240)
..++++ +|||||.+|. ||..++..|++.||++ |++|.||+.
T Consensus 328 -~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 328 -SPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred -cccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence 234555 9999999998 9999999999999986 999999975
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.40 E-value=6.7e-13 Score=117.29 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=100.5
Q ss_pred cccHHHHHHHhcCCCeEEEEcC---------ChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcH
Q 026302 94 SVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 164 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR---------~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (240)
.++++++.+.+.+.+..|||.- ...||...|||||+++.++.+...-. ...++++..+.+.
T Consensus 6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~----------~~~~~lp~~e~Fa 75 (286)
T KOG1529|consen 6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS----------PYRHMLPTAEHFA 75 (286)
T ss_pred ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC----------cccccCccHHHHH
Confidence 5889999999998889999983 34688899999999999987743211 1244555556667
Q ss_pred HHHHHHHhcCCCCCcEEEEcC--CCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhCCCCCccC
Q 026302 165 EFLQSVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 239 (240)
Q Consensus 165 ~~~~~~~~~i~~~~~IVvyC~--~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~pv~~~ 239 (240)
++.+.+ ++++++.+|||++ .|. ..|.+++|.|+..|+++|.+|+||+..|+..|+|+.++
T Consensus 76 ~y~~~l--Gi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~ 137 (286)
T KOG1529|consen 76 EYASRL--GVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS 137 (286)
T ss_pred HHHHhc--CCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence 777776 8999999999999 554 48999999999999999999999999999999999876
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.35 E-value=2.4e-12 Score=123.10 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=64.4
Q ss_pred CCeEEEEcCChhhhhhCCCCC----CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEE
Q 026302 107 NNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIV 182 (240)
Q Consensus 107 ~~~~lIDvR~~~ey~~ghIpG----Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVv 182 (240)
++.+|||||++.||..||||| |+|+|+.++.... ..++++++||+
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~~-------------------------------~~l~~~~~iiv 454 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQF-------------------------------GDLDQSKTYLL 454 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHHH-------------------------------hhcCCCCeEEE
Confidence 378999999999999999999 9999998875321 34688899999
Q ss_pred EcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccc
Q 026302 183 ACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224 (240)
Q Consensus 183 yC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~G 224 (240)
||.+|. ||..++..|..+||+||++|.+
T Consensus 455 yC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 455 YCDRGV--------------MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred ECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence 999998 9999999999999999998853
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=6.3e-12 Score=113.17 Aligned_cols=103 Identities=24% Similarity=0.445 Sum_probs=79.9
Q ss_pred hcCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
..++.|+++.|+.+++.. .+.|||+|-+.||..|||+||+||+..+.....
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~----------------------- 209 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF----------------------- 209 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh-----------------------
Confidence 567899999999999753 367999999999999999999999987765421
Q ss_pred HHHHHHHHhcC---CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH------------CCCCceEEccccHHH
Q 026302 164 PEFLQSVESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLYK 228 (240)
Q Consensus 164 ~~~~~~~~~~i---~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~------------~G~~nV~~l~GG~~~ 228 (240)
|... ... .+...+||||.... .|+..+|..|+. +-|..+|+|+||+..
T Consensus 210 --f~~~--~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ 272 (325)
T KOG3772|consen 210 --FLLK--DGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKE 272 (325)
T ss_pred --hccc--cccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHH
Confidence 0000 111 23457899999776 499999999994 346789999999999
Q ss_pred HHhC
Q 026302 229 WFKE 232 (240)
Q Consensus 229 W~~~ 232 (240)
|...
T Consensus 273 ff~~ 276 (325)
T KOG3772|consen 273 FFSN 276 (325)
T ss_pred HHHh
Confidence 9754
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.13 E-value=9e-11 Score=106.31 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=84.6
Q ss_pred ccccHHHHHHHhcC-CCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHH
Q 026302 93 RSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVE 171 (240)
Q Consensus 93 ~~Is~~el~~~l~~-~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 171 (240)
..|+..|+++++++ ...++||||++-||+..|+|+|+|||+.++..... ++..
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~--------------------------~~~~ 370 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG--------------------------KKLQ 370 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh--------------------------hhhc
Confidence 47999999999987 47899999999999999999999999999876431 1111
Q ss_pred hcC-CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCC-ceEEccccHHHHHhCCCCCc
Q 026302 172 SQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPEV 237 (240)
Q Consensus 172 ~~i-~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~-nV~~l~GG~~~W~~~g~pv~ 237 (240)
..+ ....+|+|+|+.|. .|.+|.+.|++...+ +|+-+.||+.+|...-.|..
T Consensus 371 ~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~f 424 (427)
T KOG2017|consen 371 GDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNF 424 (427)
T ss_pred ccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCC
Confidence 122 34567999999999 899999999987653 67788999999998755543
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.06 E-value=4.3e-10 Score=99.62 Aligned_cols=98 Identities=27% Similarity=0.438 Sum_probs=74.3
Q ss_pred hcCCCeEEEEcCChhhhh-----------hCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHh
Q 026302 104 QKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVES 172 (240)
Q Consensus 104 l~~~~~~lIDvR~~~ey~-----------~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (240)
++..++.+||.|...+|. .||||||+|+|+..+...- |.....++...... ..
T Consensus 168 ~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~--------------g~~k~~edl~~~f~--~~ 231 (286)
T KOG1529|consen 168 LATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD--------------GFIKPAEDLKHLFA--QK 231 (286)
T ss_pred cccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc--------------cccCCHHHHHHHHH--hc
Confidence 345579999999998886 5899999999999876421 00111112222222 23
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
++..++++|+-|..|. .+...+..|...| .++.+|+|+|.+|.-.
T Consensus 232 ~l~~~~p~~~sC~~Gi--------------sa~~i~~al~r~g-~~~~lYdGS~~Ew~~~ 276 (286)
T KOG1529|consen 232 GLKLSKPVIVSCGTGI--------------SASIIALALERSG-PDAKLYDGSWTEWALR 276 (286)
T ss_pred CcccCCCEEEeeccch--------------hHHHHHHHHHhcC-CCcceecccHHHHhhc
Confidence 6788999999999998 8999999999999 7899999999999853
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.34 E-value=1e-06 Score=79.44 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=76.2
Q ss_pred hcCccccHHHHHHHhcCC------CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCc
Q 026302 90 KRVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 163 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~------~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (240)
..++.|+++.++.+++.. +..|||+|=+.||..|||-.|+||.-.+-..
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~------------------------- 293 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG------------------------- 293 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHH-------------------------
Confidence 557799999999999864 3569999999999999999999998654321
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC------------CCCceEEccccHHHHHh
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWFK 231 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~------------G~~nV~~l~GG~~~W~~ 231 (240)
..|+- ..+..-.-+||.|.... -|+..+|..|+.+ =|..|++|+||+..+-.
T Consensus 294 ~~F~h---kplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 294 LLFRH---KPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HHHHh---ccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 11111 12334556899999664 2899999999863 35789999999998654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=97.69 E-value=4.3e-05 Score=68.38 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=69.9
Q ss_pred HHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHH----hhhhhcccCCCCCCcHHHHHHHHhcC
Q 026302 99 EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR----AAFAFFGIFSGTEENPEFLQSVESQL 174 (240)
Q Consensus 99 el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~i 174 (240)
+...++. .+..+||||.+.||..|+.|+++|+|..+-.+..+-..--.+ .+-+..+...-..-..+.+....+ .
T Consensus 7 ~~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~-f 84 (334)
T COG2603 7 DYRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKA-F 84 (334)
T ss_pred HHHHHHh-cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHH-H
Confidence 3444443 478999999999999999999999998765554322221111 111111111111111222333222 2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH-HHCCCCceEEccccHHHHH
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF 230 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L-~~~G~~nV~~l~GG~~~W~ 230 (240)
-.+.++-++|..|+ .|+...+.+| ...|++ +--+.||+.+..
T Consensus 85 ~e~~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 85 QEENPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHhCCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 23345555599887 4999999999 777875 666779988753
No 62
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.25 E-value=0.0062 Score=54.21 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=71.0
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhc
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQ 173 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (240)
.++++|+.+.+..++.+++|+|+ +..||.+|+|+-+.-++.+... ..-+.+-..+++....+.+-.
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~----- 70 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPA----- 70 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCccccccccc-----
Confidence 57899999999988999999999 5679999999988877654310 000111112222111111110
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
-=+...+|.|+.+...|.+-. |...--...-+.++..|+. ++.|.|||..+..+
T Consensus 71 ~c~~v~vilyD~~~~e~e~~~----~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 71 RCGTVTVILYDESSAEWEEET----GAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred cCCcceeeecccccccccccc----hhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 012357899988744332211 1111111233566778985 99999999887654
No 63
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=96.07 E-value=0.002 Score=62.51 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred HhhhcCccccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHH
Q 026302 87 LLQKRVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 166 (240)
Q Consensus 87 l~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (240)
+.+..++.|+++++..+ +...++|.|...||..+|+++++|+|++.-+.+.+.. .+ ...
T Consensus 616 l~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~~~--------~~----------l~~ 674 (725)
T KOG1093|consen 616 LSSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLDWL--------RF----------LPG 674 (725)
T ss_pred hhhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHHHh--------hc----------chH
Confidence 34467889999998887 4678999999999999999999999998433322110 00 000
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W 229 (240)
+ .-..+..+|++..... .+++....+..+-+.++.++.+|++..
T Consensus 675 ~-----~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 675 I-----VCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred h-----HHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 0 1123445555555443 666677777777788899999999843
No 64
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=95.65 E-value=0.14 Score=48.86 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=36.6
Q ss_pred CccccHHHHHHHh--cCC--CeEEEEcCChhhhhhCCCCCCeeechhhHHhhhh
Q 026302 92 VRSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT 141 (240)
Q Consensus 92 ~~~Is~~el~~~l--~~~--~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~ 141 (240)
.-.|++-|+.+.- ..+ .+.|||+||.++|..||+-.|.|+.-.-..++..
T Consensus 306 CLpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lmlqeP~ 359 (669)
T KOG3636|consen 306 CLPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLMLQEPE 359 (669)
T ss_pred ccchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHhcCHH
Confidence 3456666665432 222 4789999999999999999999998876665543
No 65
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=95.37 E-value=0.0031 Score=57.49 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=37.8
Q ss_pred ccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHH
Q 026302 95 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD 144 (240)
Q Consensus 95 Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~ 144 (240)
-+++++++.+.+ ...++|+|....|..+||||++|+|. .-...|.+|.
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l 63 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWL 63 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHH
Confidence 456777777765 56789999999999999999999999 4445565554
No 66
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.14 E-value=0.085 Score=40.90 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=16.9
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhh
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAE 119 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~e 119 (240)
.++++++.++.+.+=..||+.|+..|
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E 39 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGE 39 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCC
Confidence 68999999988875568999998765
No 67
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=94.72 E-value=0.11 Score=41.36 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=21.3
Q ss_pred ccccHHHHHHHhcCCCeEEEEcCChhhh
Q 026302 93 RSVEAKEALRLQKENNFVILDVRPEAEF 120 (240)
Q Consensus 93 ~~Is~~el~~~l~~~~~~lIDvR~~~ey 120 (240)
..++++++..+.+.+=..|||.|+..|-
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~ 40 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRPDREE 40 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence 3678888887766655689999987764
No 68
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=92.45 E-value=0.67 Score=37.78 Aligned_cols=113 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred hcCccccHHHHHHHhcCCCeEEEEcCChhhhhhC---CCCCC--eeechhhHHhh----hhH-H---HHHHHhhhh-hcc
Q 026302 90 KRVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGA--INVQIYRLIKE----WTA-W---DIARRAAFA-FFG 155 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~g---hIpGA--inip~~~l~~~----~~~-~---~~~~~~~~~-~~g 155 (240)
..+..++.++...+.+-+=-.|||.|++.|.... .++|. +|+|+...... ... + ......-.. +..
T Consensus 25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 104 (164)
T PF13350_consen 25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE 104 (164)
T ss_dssp S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence 4556788888887775444589999999997753 45565 45554322211 000 0 000000000 111
Q ss_pred cCCC-CCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHH-HHHHHHHCCCCc
Q 026302 156 IFSG-TEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI-AAYLLVLNGYKN 218 (240)
Q Consensus 156 ~~~~-~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~-aa~~L~~~G~~n 218 (240)
+... .+...++++.+ .+...+++|+|..|.+ |.-. ++-.|..+|++.
T Consensus 105 ~~~~~~~~~~~~~~~l---~~~~~p~l~HC~aGKD-------------RTG~~~alll~~lGV~~ 153 (164)
T PF13350_consen 105 MLESYAEAYRKIFELL---ADAPGPVLFHCTAGKD-------------RTGVVAALLLSLLGVPD 153 (164)
T ss_dssp GGGSTHHHHHHHHHHH---H-TT--EEEE-SSSSS-------------HHHHHHHHHHHHTT--H
T ss_pred HHHhhhHHHHHHHHHh---ccCCCcEEEECCCCCc-------------cHHHHHHHHHHHcCCCH
Confidence 1111 12233333333 2233699999999985 6555 555567789853
No 69
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=89.71 E-value=1.1 Score=34.65 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=42.0
Q ss_pred CCCeEEEEcCChhhhhhCCCCC--CeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEE
Q 026302 106 ENNFVILDVRPEAEFKEAHPPG--AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVA 183 (240)
Q Consensus 106 ~~~~~lIDvR~~~ey~~ghIpG--Ainip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvy 183 (240)
.+=..|||+++..++..-+.+| -.++|+.+...... ....+.+++-+......+.+|+|+
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------------~~~~~~~~~~i~~~~~~~~~vlVH 87 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDI------------------SKYFDEAVDFIDDAREKGGKVLVH 87 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCCh------------------HHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3345899999888752222233 24566544321000 000122222232234557899999
Q ss_pred cCCCCCCCCCCCCCCchhhHHHH--HHHHHHHCCC
Q 026302 184 CATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGY 216 (240)
Q Consensus 184 C~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~G~ 216 (240)
|..|.. ||.. +++.+...|+
T Consensus 88 C~~G~~-------------Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 88 CLAGVS-------------RSATLVIAYLMKTLGL 109 (139)
T ss_pred CCCCCc-------------hhHHHHHHHHHHHcCC
Confidence 999973 5553 4555565555
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=89.33 E-value=0.79 Score=41.85 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=31.6
Q ss_pred CccccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCC
Q 026302 92 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP 126 (240)
Q Consensus 92 ~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~---ghIp 126 (240)
...+...++.+.+.+.++.|||+|+..+|.. ||||
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 4678899999999888899999999999998 9998
No 71
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=85.43 E-value=3.9 Score=31.79 Aligned_cols=32 Identities=34% Similarity=0.570 Sum_probs=22.9
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH--HHHHHHHHCCCC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL--IAAYLLVLNGYK 217 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~--~aa~~L~~~G~~ 217 (240)
....+.+|+|+|..|.. ||. .+++.+...|++
T Consensus 74 ~~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 74 AEKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS 107 (138)
T ss_pred HhcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence 35778899999999973 554 355556667764
No 72
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=80.88 E-value=1.1 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=31.8
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC----CCCceEEccccHHHH
Q 026302 180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW 229 (240)
Q Consensus 180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~----G~~nV~~l~GG~~~W 229 (240)
|+|+|.+..| ||..|...|+.+ +-.++.+.-.|+.+|
T Consensus 1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 7899999988 999999988887 667789998998866
No 73
>PLN02727 NAD kinase
Probab=80.66 E-value=4.6 Score=42.03 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=69.3
Q ss_pred cCcchhhh--hccccCCCCcceeeccCCCCCCCCCCchhhHHHHH------HHhh------hcCccccHHHHHHHhcCCC
Q 026302 43 VRSFTFSR--RRLSSQSVPRGLIIQNAATKPAKSPAEEDWKTKRE------LLLQ------KRVRSVEAKEALRLQKENN 108 (240)
Q Consensus 43 ~rs~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~l~~------~~~~~Is~~el~~~l~~~~ 108 (240)
.||..-.| +||+..-...|+.. ..-.|... ..+.|...+- .+.. .....++++++..+.+.+=
T Consensus 206 ~~~~~~~~~~~~l~~~~~d~~~pr--~~~~p~~~-~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~Gf 282 (986)
T PLN02727 206 DRSLDVWRKLQRLKNVCYDAGFPR--SDDYPCHT-LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGF 282 (986)
T ss_pred CcchhHHHHHHHHHhhhhhcCCCC--CCCCCCcc-cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCC
Confidence 35544433 78877777777753 22223322 3344554310 1111 2345899999988887744
Q ss_pred eEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCC--CCCCcHHHHHHHHhcC-C-CCCcEEEEc
Q 026302 109 FVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS--GTEENPEFLQSVESQL-D-KDAKIIVAC 184 (240)
Q Consensus 109 ~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~i-~-~~~~IVvyC 184 (240)
-.||+.|+..|- .+.. .... + ..+.+.++.+.++.. .....++.++++.+.+ + ..++|++||
T Consensus 283 KTIINLRpd~E~-~q~~-------~~ee-~-----eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHC 348 (986)
T PLN02727 283 KTIVDLRAEIVK-DNFY-------QAAV-D-----DAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHS 348 (986)
T ss_pred eEEEECCCCCcC-CCch-------hHHH-H-----HHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEEC
Confidence 579999997661 1111 0001 0 112223344444432 2233345555554545 3 578999999
Q ss_pred CCCC
Q 026302 185 ATGG 188 (240)
Q Consensus 185 ~~G~ 188 (240)
.+|.
T Consensus 349 KSGa 352 (986)
T PLN02727 349 KEGV 352 (986)
T ss_pred CCCC
Confidence 9997
No 74
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.01 E-value=14 Score=29.38 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=44.3
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhhCCCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCC-CcHHHHHHHHh
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE-ENPEFLQSVES 172 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~ 172 (240)
.++++++.++...+=..||--||..|-. | -|-+.-+.++ +...++.|...+.... --++-++...+
T Consensus 15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~-----~---QP~~~~i~~a-----a~~aGl~y~~iPV~~~~iT~~dV~~f~~ 81 (130)
T COG3453 15 QISPADIASIAALGFKSIICNRPDGEEP-----G---QPGFAAIAAA-----AEAAGLTYTHIPVTGGGITEADVEAFQR 81 (130)
T ss_pred CCCHHHHHHHHHhccceecccCCCCCCC-----C---CCChHHHHHH-----HHhcCCceEEeecCCCCCCHHHHHHHHH
Confidence 6888898887776445689999865531 1 1222222221 2233344444433321 11233333333
Q ss_pred cC-CCCCcEEEEcCCCC
Q 026302 173 QL-DKDAKIIVACATGG 188 (240)
Q Consensus 173 ~i-~~~~~IVvyC~~G~ 188 (240)
.+ ..+.+|..||++|.
T Consensus 82 Al~eaegPVlayCrsGt 98 (130)
T COG3453 82 ALDEAEGPVLAYCRSGT 98 (130)
T ss_pred HHHHhCCCEEeeecCCc
Confidence 33 45679999999997
No 75
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=69.33 E-value=14 Score=31.71 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=30.2
Q ss_pred HHhcCCC--CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 170 VESQLDK--DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 170 ~~~~i~~--~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
+.+..+. ..+|+|+|..|+ ||. -+..+|+.|...||+ |.++
T Consensus 40 i~~~~~~~~~~~v~vlcG~Gn---------NGG--DG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 40 ILREYPLGRARRVLVLCGPGN---------NGG--DGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred HHHHcCcccCCEEEEEECCCC---------ccH--HHHHHHHHHHhCCCc-eEEE
Confidence 3344555 678999999886 444 678899999999986 5543
No 76
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=69.30 E-value=4.2 Score=33.10 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=25.5
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHH
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 228 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~ 228 (240)
+++++.++++++-.|.. + .-..-..++..|+++|..+..+||||-..
T Consensus 96 G~~~~g~l~l~~vdg~~---~------~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQ---S------AGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EE-TTSEEEEEEE-------S--------B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEeCCCcEEEEEEcCCc---C------CCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 35666677666644310 0 00267789999999999999999998653
No 77
>PRK10126 tyrosine phosphatase; Provisional
Probab=68.56 E-value=5.8 Score=31.81 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W 229 (240)
.+|+|+|....| ||..|..+|+..+- ++.+.-.|...|
T Consensus 3 ~~iLFVC~gN~c-------------RSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNIC-------------RSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 479999999998 99999999998763 466777777555
No 78
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=68.26 E-value=6.4 Score=31.60 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=30.3
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W 229 (240)
.+|+|+|....| ||..|..+|+.+.- ++.+.-.|..+|
T Consensus 3 ~~ILfVC~gN~c-------------RSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNIC-------------RSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHh-------------HHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 479999999988 99999999988653 466777777655
No 79
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=65.49 E-value=18 Score=30.82 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=28.3
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
..++..+|+|+|..|+ +|. .+..+++.|...|++ |+++
T Consensus 41 ~~~~~~~v~vl~G~GN---------NGG--DGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 41 AFPLAGHVIIFCGPGN---------NGG--DGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HcCCCCeEEEEECCCC---------Ccc--HHHHHHHHHHhCCCE-EEEE
Confidence 3455678999999886 333 677889999887775 7765
No 80
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=64.23 E-value=11 Score=31.04 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.9
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEE
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 221 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~ 221 (240)
.+..+|+|+|..|+ +|. .+..+++.|...||+ |.+
T Consensus 23 ~~~~~v~il~G~Gn---------NGg--Dgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGN---------NGG--DGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSH---------HHH--HHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCC---------ChH--HHHHHHHHHHHCCCe-EEE
Confidence 78889999999986 333 677899999999996 665
No 81
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=63.90 E-value=11 Score=29.23 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
++|+|+|....| ||..|..+|+.++-.++.+.-.|..
T Consensus 1 ~~vlfvC~~N~c-------------RS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 1 KKVMFVCKRNSC-------------RSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred CeEEEEcCCcHH-------------HHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 368999998887 9999999998876556766666653
No 82
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=61.38 E-value=69 Score=26.94 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCC-------chhhHHHHHHHHHHHCCCCceEEccc
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPE-------GQQSRSLIAAYLLVLNGYKNVYHLEG 224 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~-------~~~~rs~~aa~~L~~~G~~nV~~l~G 224 (240)
..|++.+ ..-.++++||++-.-..... .+.. ..-..-..+...|++.|.+|+++++|
T Consensus 81 ~~fv~~i-R~~hP~tPIllv~~~~~~~~---~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 81 DGFVKTI-REAHPDTPILLVSPIPYPAG---YFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHH-HTT-SSS-EEEEE----TTT---TS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHH-HHhCCCCCEEEEecCCcccc---ccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 5667666 56678899998875443211 1111 11111234555677789999999987
No 83
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=61.20 E-value=7.8 Score=30.41 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHH
Q 026302 180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W 229 (240)
|+|+|....| ||..|..+|+.+.-.++.+.-.|+..|
T Consensus 1 vLFVC~~N~c-------------RSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNIC-------------RSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhh-------------hHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 5789998887 999998888876544577777777654
No 84
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=60.59 E-value=7.5 Score=32.44 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH-HHHHHHHHCCC
Q 026302 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGY 216 (240)
Q Consensus 166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~-~aa~~L~~~G~ 216 (240)
+++++...+..+.+|+++|.+|.. |+- .||..|.++|-
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlG-------------RtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLG-------------RTGLVAACLLLELGD 160 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSS-------------HHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCCEEEEECCCCCC-------------HHHHHHHHHHHHHcC
Confidence 344555566789999999999973 554 57777777763
No 85
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=60.18 E-value=15 Score=32.31 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
..+|+|+|..|+ +|. .+..+|+.|...||+ |.++
T Consensus 60 ~~~V~VlcG~GN---------NGG--DGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGN---------NGG--DGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CCeEEEEECCCC---------Cch--hHHHHHHHHHHCCCe-EEEE
Confidence 368999999886 333 678899999999995 6655
No 86
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=59.99 E-value=12 Score=32.98 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH-HHHHHHHHCCCC
Q 026302 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGYK 217 (240)
Q Consensus 166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~-~aa~~L~~~G~~ 217 (240)
+++.+...+..+.+|+|.|..|.. |+. .++.+|.+.|++
T Consensus 159 ~l~~i~~~l~~g~~VaVHC~AGlG-------------RTGtl~AayLI~~Gms 198 (241)
T PTZ00393 159 WLTIVNNVIKNNRAVAVHCVAGLG-------------RAPVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCC-------------HHHHHHHHHHHHcCCC
Confidence 333333335678899999999974 444 456666667874
No 87
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=59.90 E-value=20 Score=34.53 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
+++|+|+|..|+ ||. .+..+|+.|...||+ |.++
T Consensus 59 ~~~VlVlcG~GN---------NGG--DGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGN---------NGG--DGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCC---------CHH--HHHHHHHHHHHCCCc-eEEE
Confidence 368999999987 444 677899999999996 6544
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=59.00 E-value=32 Score=27.25 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcccc------HHHHHhCCC
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG------LYKWFKEEL 234 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG------~~~W~~~g~ 234 (240)
++++++. ...+..+|++|..-.. .......+...|++.|..++.++.|| +..|.+.|.
T Consensus 43 e~~v~aa---~e~~adii~iSsl~~~----------~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 43 EEIARQA---VEADVHVVGVSSLAGG----------HLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred HHHHHHH---HHcCCCEEEEcCchhh----------hHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 4455544 4557778888885431 11245567777888888778888887 334555554
No 89
>PRK10565 putative carbohydrate kinase; Provisional
Probab=58.94 E-value=22 Score=34.64 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 174 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
+++..+|+|+|..|+ +|. .+..+++.|...||+ |.++
T Consensus 57 ~~~~~~v~vl~G~GN---------NGG--DG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 57 YPDARHWLVLCGHGN---------NGG--DGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred cCCCCeEEEEEcCCC---------chH--HHHHHHHHHHHCCCc-eEEE
Confidence 445677999999886 444 667899999999996 5544
No 90
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=57.16 E-value=23 Score=34.92 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
..+|+|+|..|+ ||. .+..+|+.|...||+ |.++
T Consensus 135 ~~~VlVlcGpGN---------NGG--DGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 135 YSRVLAICGPGN---------NGG--DGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CCEEEEEECCCc---------CHH--HHHHHHHHHHHCCCc-eEEE
Confidence 368999999987 444 677899999999996 6654
No 91
>PRK13530 arsenate reductase; Provisional
Probab=56.44 E-value=20 Score=28.32 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
++|+|+|....| ||..|..+|+.++-+++.+.-.|.
T Consensus 4 ~~vLFvC~~N~c-------------RS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSC-------------RSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchh-------------HHHHHHHHHHHhcCCCEEEECCCC
Confidence 579999999987 999888888775435677777775
No 92
>PRK12361 hypothetical protein; Provisional
Probab=55.99 E-value=19 Score=35.22 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=14.3
Q ss_pred hcCCCCCcEEEEcCCCCC
Q 026302 172 SQLDKDAKIIVACATGGT 189 (240)
Q Consensus 172 ~~i~~~~~IVvyC~~G~~ 189 (240)
+....+.+|+|+|..|..
T Consensus 170 ~~~~~~~~VlVHC~~G~s 187 (547)
T PRK12361 170 RQVRANKSVVVHCALGRG 187 (547)
T ss_pred HHHHCCCeEEEECCCCCC
Confidence 345677899999999983
No 93
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=55.78 E-value=27 Score=30.58 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCcHHHHHHHHhcCC---CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHH-----HHHHHCCCCceEEc
Q 026302 161 EENPEFLQSVESQLD---KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA-----YLLVLNGYKNVYHL 222 (240)
Q Consensus 161 ~~~~~~~~~~~~~i~---~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa-----~~L~~~G~~nV~~l 222 (240)
.+...+++++...++ ++..+|++|.+.. ....++ ..|...||++|++-
T Consensus 118 ~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~--------------h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 118 NDYEICVEAIKDQIPPLNKDEILVLMGHGTD--------------HHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred hhHHHHHHHHHHhcCCcCcCeEEEEEecCCC--------------ccHHHHHHHHHHHHHhcCCCceEEE
Confidence 455778888877777 7888999998764 222233 34667899888853
No 94
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=55.28 E-value=13 Score=28.48 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=22.3
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHH--HHHHHHHCCCC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK 217 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~--aa~~L~~~G~~ 217 (240)
...++.+|+|+|..|.. ||.. +++.+...|++
T Consensus 69 ~~~~~~~VlVHC~~G~~-------------RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 69 AISEGGKVLVHCKAGLS-------------RSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHTTSEEEEEESSSSS-------------HHHHHHHHHHHHHHTSS
T ss_pred hhcccceeEEEeCCCcc-------------cchHHHHHHHHHHcCCC
Confidence 36778899999999984 5553 44455556663
No 95
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=54.97 E-value=14 Score=29.63 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=31.0
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHH
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 228 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~ 228 (240)
.+|+|+|.+..| ||..|-.+++...-+++.+.-.|..+
T Consensus 3 ~kVLFVC~gN~c-------------RSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNIC-------------RSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcc-------------cCHHHHHHHHHhccCCeEEECCccCC
Confidence 479999999998 89988888887644778888888644
No 96
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=53.82 E-value=12 Score=30.68 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---CCCCceEEccccHHHH
Q 026302 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 229 (240)
Q Consensus 168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~G~~nV~~l~GG~~~W 229 (240)
+.+...++++..+|+.+..|.. ..|...+..|.. .|..++..+-||-.+.
T Consensus 58 ~~il~~i~~~~~~i~Ld~~Gk~------------~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 58 ERILKKIPPNDYVILLDERGKQ------------LSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp HHHHCTSHTTSEEEEE-TTSEE--------------HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred HHHHhhccCCCEEEEEcCCCcc------------CChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3455678899999999988864 378888888866 6888899999986544
No 97
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=52.21 E-value=16 Score=28.70 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.9
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCC-ceEEccccHHHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKW 229 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~-nV~~l~GG~~~W 229 (240)
+|+|+|....| ||..|..+|+...-+ ++.+.-.|+..+
T Consensus 2 ~iLfvc~~N~~-------------RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNIC-------------RSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhh-------------hhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 68999999887 999898888876443 677888887543
No 98
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=51.51 E-value=44 Score=24.69 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
.+.+..+.+.+++|||..-. .+..+...|.+.+. ++..+.|++
T Consensus 20 ~i~~~~~~~~~~lvf~~~~~--------------~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 20 LLKEHLKKGGKVLIFCPSKK--------------MLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred HHHhcccCCCcEEEEeCcHH--------------HHHHHHHHHHhcCC-cEEEEECCC
Confidence 33333446788999999876 78888888988776 488888874
No 99
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=49.92 E-value=23 Score=31.55 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=43.7
Q ss_pred ccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEc
Q 026302 155 GIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 222 (240)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l 222 (240)
..+...++.-+.++.+...+.++..+++||..-. +.......|++.||.++...
T Consensus 166 av~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------------Qv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 166 AVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE--------------QVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH--------------HHHHHHHHHHhcCccchhhh
Confidence 3445556667888888888999999999999876 88889999999999766544
No 100
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.27 E-value=35 Score=27.75 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=34.1
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
.+..+..+|.+|.... +-..-...+...|++.|.+++.++.||.
T Consensus 59 A~~~dv~vIgvSsl~g----------~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 59 AVEEDVDVIGVSSLDG----------GHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred HHhcCCCEEEEEeccc----------hHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 4788888999988543 1224566788899999999999888885
No 101
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=47.69 E-value=30 Score=28.63 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCC
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGT 189 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~ 189 (240)
.+.++.+...+.++.+|+|.|..|..
T Consensus 92 ~~~v~~i~~~~~~g~kVvVHC~~Gig 117 (180)
T COG2453 92 DKIVDFIEEALSKGKKVVVHCQGGIG 117 (180)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCc
Confidence 33444444556788899999999973
No 102
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.97 E-value=66 Score=24.69 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=30.8
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcccc------HHHHHhCCC
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG------LYKWFKEEL 234 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG------~~~W~~~g~ 234 (240)
..+..+|++|..-.. ....+......|++.|+.++.++.|| +..|.+.|.
T Consensus 48 ~~~~d~V~iS~~~~~----------~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 48 QEDVDVIGLSSLSGG----------HMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred HcCCCEEEEcccchh----------hHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 345567777765431 11244556777888888788888886 223556664
No 103
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=45.95 E-value=13 Score=34.22 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred hcCccccHHHHHHHhc------CCCeEEEEcCChhhhhhCCCCCC
Q 026302 90 KRVRSVEAKEALRLQK------ENNFVILDVRPEAEFKEAHPPGA 128 (240)
Q Consensus 90 ~~~~~Is~~el~~~l~------~~~~~lIDvR~~~ey~~ghIpGA 128 (240)
.....++++++.+.++ ..+..+||||++. |...++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 3456799999998883 2378899999988 999999853
No 104
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=45.25 E-value=51 Score=30.08 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
+.++|+.+.+.. .-|-...+..+.+.|++.|++ +.++.-|-.+|.-.
T Consensus 111 ~~~rv~~vGTDc--------avGK~tTal~L~~~l~~~G~~-a~fvaTGQTGimia 157 (301)
T PF07755_consen 111 KAKRVLTVGTDC--------AVGKMTTALELRRALRERGIN-AGFVATGQTGIMIA 157 (301)
T ss_dssp SSEEEEEEESSS--------SSSHHHHHHHHHHHHHHTT---EEEEE-SHHHHHCH
T ss_pred CCCEEEEEccCc--------cccHHHHHHHHHHHHHHcCCC-ceEEecCCceEEEe
Confidence 345566544432 134456788899999999996 77777676776544
No 105
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=45.03 E-value=25 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 180 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 180 IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
|+|+|....| ||..|..+|+.+.-+++.+.-.|+.
T Consensus 1 iLFvC~~N~~-------------RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSC-------------RSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchH-------------HHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 5788888776 8888887777753346777777763
No 106
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=44.69 E-value=41 Score=27.57 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHC---CCCceEEccccHHHH
Q 026302 169 SVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN---GYKNVYHLEGGLYKW 229 (240)
Q Consensus 169 ~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~---G~~nV~~l~GG~~~W 229 (240)
.+.+.++++..+|+.|..|..+ .|...+..|... |..++.++-||-.++
T Consensus 59 ~il~~l~~~~~~i~LDe~Gk~~------------sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 59 RILAALPKGARVIALDERGKQL------------SSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred HHHhhCCCCCEEEEEcCCCCcC------------CHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 3445678888889999888743 788888888653 656799999986554
No 107
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=41.38 E-value=78 Score=23.91 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=13.2
Q ss_pred hcCCCCCcEEEEcCCCC
Q 026302 172 SQLDKDAKIIVACATGG 188 (240)
Q Consensus 172 ~~i~~~~~IVvyC~~G~ 188 (240)
+.++++..|+|+|+-++
T Consensus 52 ~~~~~~~~vlil~Dl~g 68 (116)
T PF03610_consen 52 EELDEGDGVLILTDLGG 68 (116)
T ss_dssp HHCCTTSEEEEEESSTT
T ss_pred HhccCCCcEEEEeeCCC
Confidence 45688888988888765
No 108
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.90 E-value=44 Score=26.17 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
++++++|+..+| .+..+++.|...|+++|+++.--..
T Consensus 11 ~~~~vlviGaGg---------------~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGAGG---------------AARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESSSH---------------HHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECCHH---------------HHHHHHHHHHHcCCCEEEEEECCHH
Confidence 466778876644 6888999999999999998875543
No 109
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=38.43 E-value=43 Score=27.20 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=34.2
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
..++++++..-+.++..++++..... ....+...|++.||.-..+-..|+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~--------------~~~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLN--------------GEPDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccC--------------ChHHHHHHHHhCCCeEEEEEEeec
Confidence 45677777667788887777655433 367788999999997555555543
No 110
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=38.38 E-value=31 Score=28.34 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.5
Q ss_pred CCCCCcEEEEcCCCCC
Q 026302 174 LDKDAKIIVACATGGT 189 (240)
Q Consensus 174 i~~~~~IVvyC~~G~~ 189 (240)
..++.+|+|+|..|..
T Consensus 95 ~~~g~~V~VHC~aGig 110 (166)
T PTZ00242 95 STPPETIAVHCVAGLG 110 (166)
T ss_pred ccCCCeEEEECCCCCC
Confidence 4568899999999973
No 111
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=38.35 E-value=47 Score=30.02 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCC-ceEEccccHH
Q 026302 166 FLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLY 227 (240)
Q Consensus 166 ~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~-nV~~l~GG~~ 227 (240)
.+..+.....++.+++|+|++-. .+..++..|++.+.+ ++..+.|++.
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~--------------~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVD--------------RAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHH--------------HHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 33444344566788999999876 888899999998874 6888888863
No 112
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=36.98 E-value=80 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---CCCCceEEccccHHH
Q 026302 168 QSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYK 228 (240)
Q Consensus 168 ~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~G~~nV~~l~GG~~~ 228 (240)
+++.+.++++..+|+.+-.|..+ .|...|..|.. .| .+|.++-||-.+
T Consensus 58 ~~il~~i~~~~~vi~Ld~~Gk~~------------sSe~fA~~l~~~~~~G-~~i~f~IGG~~G 108 (155)
T COG1576 58 EAILAAIPKGSYVVLLDIRGKAL------------SSEEFADFLERLRDDG-RDISFLIGGADG 108 (155)
T ss_pred HHHHHhcCCCCeEEEEecCCCcC------------ChHHHHHHHHHHHhcC-CeEEEEEeCccc
Confidence 34556789999999988888643 67778877754 57 789999998654
No 113
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=34.14 E-value=94 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccc
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~G 224 (240)
.++.+++++++..+| .|.-+++.|.+.|..+|.++.-
T Consensus 118 ~~~~~~~vlilGaGG---------------aarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 118 QVPPDLVVALRGSGG---------------MAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCCCCCeEEEECCcH---------------HHHHHHHHHHHCCCCEEEEEeC
Confidence 345556777776654 6777888899999988888754
No 114
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=33.94 E-value=41 Score=26.99 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred CCcHHHHHHHHhcCCCCCcEEEEcCCCC
Q 026302 161 EENPEFLQSVESQLDKDAKIIVACATGG 188 (240)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~IVvyC~~G~ 188 (240)
..+..|+.-+. .++++..++|.|..|.
T Consensus 109 ~~iD~fi~~v~-~~p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 109 EDIDAFINFVK-SLPKDTWLHFHCQAGR 135 (149)
T ss_dssp HHHHHHHHHHH-TS-TT-EEEEE-SSSS
T ss_pred HHHHHHHHHHH-hCCCCCeEEEECCCCC
Confidence 34567777774 4599999999999997
No 115
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=32.84 E-value=67 Score=28.66 Aligned_cols=32 Identities=34% Similarity=0.661 Sum_probs=24.9
Q ss_pred cCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHH--HHHHHHHHCCCC
Q 026302 173 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL--IAAYLLVLNGYK 217 (240)
Q Consensus 173 ~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~--~aa~~L~~~G~~ 217 (240)
...++.+|+|+|..|.. ||. .+|+.++..|.+
T Consensus 151 a~~~~~~vlVHC~~GvS-------------RSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 151 AREKGGKVLVHCQAGVS-------------RSATLVIAYLMKYEGLS 184 (285)
T ss_pred HHhCCCeEEEEcCCccc-------------hhHHHHHHHHHHHcCCC
Confidence 35678999999999984 655 678888887763
No 116
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=32.22 E-value=60 Score=23.01 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=19.6
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH----HHHCCCCceEEcc
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYL----LVLNGYKNVYHLE 223 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~----L~~~G~~nV~~l~ 223 (240)
+|++.|.+|. ..|..++.. +.+.|++ +....
T Consensus 1 kIlvvC~~Gi-------------~TS~~~~~~i~~~~~~~gi~-~~~~~ 35 (90)
T PF02302_consen 1 KILVVCGSGI-------------GTSLMVANKIKKALKELGIE-VEVSA 35 (90)
T ss_dssp EEEEEESSSS-------------HHHHHHHHHHHHHHHHTTEC-EEEEE
T ss_pred CEEEECCChH-------------HHHHHHHHHHHHHHHhccCc-eEEEE
Confidence 5899999997 255545454 4557875 44333
No 117
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=42 Score=28.98 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=19.3
Q ss_pred HHHHHHHCCCCceEEccc-cHHHHHhC
Q 026302 207 AAYLLVLNGYKNVYHLEG-GLYKWFKE 232 (240)
Q Consensus 207 aa~~L~~~G~~nV~~l~G-G~~~W~~~ 232 (240)
|-..|+.+||.||.+..| |..+|.+.
T Consensus 110 A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 110 ARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHcCCCceEEEECCcccCCCCC
Confidence 444588899999886654 88888764
No 118
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=30.62 E-value=1.8e+02 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.2
Q ss_pred cccHHHHHHHhcCCCeEEEEcCChhhhhh---CCCCC
Q 026302 94 SVEAKEALRLQKENNFVILDVRPEAEFKE---AHPPG 127 (240)
Q Consensus 94 ~Is~~el~~~l~~~~~~lIDvR~~~ey~~---ghIpG 127 (240)
.....++...+.+.+..+||+|...+|.. |.+++
T Consensus 151 GsGKT~iL~~L~~~~~~vlDlE~~aehrGS~fG~~~~ 187 (345)
T PRK11784 151 GSGKTELLQALANAGAQVLDLEGLANHRGSSFGRLGG 187 (345)
T ss_pred cccHHHHHHHHHhcCCeEEECCchhhhccccccCCCC
Confidence 44556777777776888999999999973 45554
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=30.36 E-value=59 Score=32.70 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
.+.+++.+...+..+.+++|+|.+-. ++..++..|...|++ +..+.|++.
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~--------------~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKR--------------MAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHH--------------HHHHHHHHHhhccee-EEEEECCCC
Confidence 45666666555677889999999876 899999999999995 777766644
No 120
>PTZ00110 helicase; Provisional
Probab=29.01 E-value=98 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
..+.++||||++-. .+..++..|+..|+. +..+.|++.
T Consensus 375 ~~~~k~LIF~~t~~--------------~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 375 RDGDKILIFVETKK--------------GADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred ccCCeEEEEecChH--------------HHHHHHHHHHHcCCc-EEEEECCCc
Confidence 36778999999876 888999999999996 667777754
No 121
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=28.46 E-value=1e+02 Score=31.59 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 162 ENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
..+++++.. +..+..||++|..-.. -......++..|++.|.++|.+|.||.
T Consensus 621 s~e~~v~aa---~~~~a~ivvlcs~d~~----------~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 621 TPEEAARQA---VENDVHVVGVSSLAAG----------HKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred CHHHHHHHH---HHcCCCEEEEeccchh----------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 345555554 5667789999986531 113566788899999988898888874
No 122
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=28.00 E-value=76 Score=25.90 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=32.5
Q ss_pred HHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH---CCCCceEEccccHHHH
Q 026302 170 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL---NGYKNVYHLEGGLYKW 229 (240)
Q Consensus 170 ~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~---~G~~nV~~l~GG~~~W 229 (240)
+.+.++ +..+|+.|..|.. ..|...|..|.. .| .+|..+-||-.++
T Consensus 59 il~~~~-~~~~i~LDe~Gk~------------~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~ 107 (153)
T TIGR00246 59 ILAAIG-KAHVVTLDIPGKP------------WTTPQLADTLEKWKTDG-RDVTLLIGGPEGL 107 (153)
T ss_pred HHHhCC-CCeEEEEcCCCCc------------CCHHHHHHHHHHHhccC-CeEEEEEcCCCcC
Confidence 344566 4678888888864 377888888864 46 5799999986544
No 123
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=27.95 E-value=1.2e+02 Score=22.15 Aligned_cols=31 Identities=39% Similarity=0.480 Sum_probs=23.7
Q ss_pred CcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcc
Q 026302 178 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 223 (240)
Q Consensus 178 ~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~ 223 (240)
-+|+|-|..|. .+..+-..|..+|.+ +..+.
T Consensus 22 ~kivvD~~~G~--------------~~~~~~~ll~~lg~~-~~~~n 52 (104)
T PF02879_consen 22 LKIVVDCMNGA--------------GSDILPRLLERLGCD-VIELN 52 (104)
T ss_dssp CEEEEE-TTST--------------THHHHHHHHHHTTCE-EEEES
T ss_pred CEEEEECCCCH--------------HHHHHHHHHHHcCCc-EEEEe
Confidence 48999999997 788899999999995 43343
No 124
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=27.06 E-value=1.4e+02 Score=26.63 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHhcC--CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccc
Q 026302 164 PEFLQSVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224 (240)
Q Consensus 164 ~~~~~~~~~~i--~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~G 224 (240)
.-|+..+.... .++++++++..+| .+.-+++.|.+.|..+|++++-
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGG---------------aarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGG---------------VGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcH---------------HHHHHHHHHHHCCCCEEEEEcC
Confidence 34455553322 2356677665554 6777888899999988888764
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.57 E-value=72 Score=32.20 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=39.2
Q ss_pred CcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 162 ENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 162 ~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
..+.+++.+...+.++.+++|+|.+-. ++..++..|...|+. +..+.|++.
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~--------------~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKK--------------MAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHH--------------HHHHHHHHHhhhccc-eeeeeCCCC
Confidence 335666666656678889999999876 899999999999985 777766543
No 126
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=26.29 E-value=1e+02 Score=30.66 Aligned_cols=36 Identities=36% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccH
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 226 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~ 226 (240)
-+.+||||.+.-. .+..+|..|.++||. ++.|-||-
T Consensus 516 ~~ppiIIFvN~kk--------------~~d~lAk~LeK~g~~-~~tlHg~k 551 (673)
T KOG0333|consen 516 FDPPIIIFVNTKK--------------GADALAKILEKAGYK-VTTLHGGK 551 (673)
T ss_pred CCCCEEEEEechh--------------hHHHHHHHHhhccce-EEEeeCCc
Confidence 3567888888776 688899999999995 99999984
No 127
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=26.29 E-value=69 Score=22.43 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=23.1
Q ss_pred CccccHHHHHHHhcCC-CeEEEEcCChhh
Q 026302 92 VRSVEAKEALRLQKEN-NFVILDVRPEAE 119 (240)
Q Consensus 92 ~~~Is~~el~~~l~~~-~~~lIDvR~~~e 119 (240)
-..|+.+++.+++.++ ++.|+|..+-++
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktgeD 45 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGED 45 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCcc
Confidence 4589999999999876 789999997554
No 128
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.13 E-value=3.3e+02 Score=24.31 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcc
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 223 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~ 223 (240)
..+.|.|++..|+ .|--.-+...+..|.+.|++ |.++|
T Consensus 92 ~~~vIav~~~KGG---------vGkTT~a~nLA~~la~~g~~-VlLvD 129 (322)
T TIGR03815 92 RGVVVAVIGGRGG---------AGASTLAAALALAAARHGLR-TLLVD 129 (322)
T ss_pred CceEEEEEcCCCC---------CcHHHHHHHHHHHHHhcCCC-EEEEe
Confidence 3445666666665 34444567788888888864 77765
No 129
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.78 E-value=93 Score=23.07 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHH----HHHCCCCceEEccccHHH
Q 026302 177 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL----LVLNGYKNVYHLEGGLYK 228 (240)
Q Consensus 177 ~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~----L~~~G~~nV~~l~GG~~~ 228 (240)
..+|++.|.+|. .+..++.. +++.|++ +.+-..++..
T Consensus 3 ~~~ILl~C~~G~--------------sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~ 43 (95)
T TIGR00853 3 ETNILLLCAAGM--------------STSLLVNKMNKAAEEYGVP-VKIAAGSYGA 43 (95)
T ss_pred ccEEEEECCCch--------------hHHHHHHHHHHHHHHCCCc-EEEEEecHHH
Confidence 358999999997 34444444 4557875 5555555544
No 130
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=25.61 E-value=96 Score=22.23 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=9.0
Q ss_pred cEEEEcCCCC
Q 026302 179 KIIVACATGG 188 (240)
Q Consensus 179 ~IVvyC~~G~ 188 (240)
+|+++|.+|.
T Consensus 2 kilvvCg~G~ 11 (87)
T cd05567 2 KIVFACDAGM 11 (87)
T ss_pred EEEEECCCCc
Confidence 6899999997
No 131
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=25.46 E-value=48 Score=32.77 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=39.7
Q ss_pred CCCCCeeechhhHHhhhhHHHHHHHhhhhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhH
Q 026302 124 HPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 203 (240)
Q Consensus 124 hIpGAinip~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r 203 (240)
-+|||.|-|+.-...+..... .. -.-.++...|+. +.-....+++|.|+|.+|. .
T Consensus 28 icPGSRSTPLala~~~~~~i~--------~h--v~~DERsagFfA-LGlAKas~rPVavi~TSGT--------------A 82 (566)
T COG1165 28 ICPGSRSTPLALAAAAHDAIT--------VH--VHIDERSAGFFA-LGLAKASKRPVAVICTSGT--------------A 82 (566)
T ss_pred ECCCCCCcHHHHHHHhcCCeE--------EE--EecccchHHHHH-HhhhhhcCCCEEEEEcCcc--------------h
Confidence 369999999876544321000 00 000122222322 1123467789999999996 6
Q ss_pred HHHHHHHHHHCCCCceE
Q 026302 204 SLIAAYLLVLNGYKNVY 220 (240)
Q Consensus 204 s~~aa~~L~~~G~~nV~ 220 (240)
++...=...+.++.+|.
T Consensus 83 ~ANl~PAViEA~~srvp 99 (566)
T COG1165 83 VANLYPAVIEANLSRVP 99 (566)
T ss_pred hhhccHHHHhhhhcCCc
Confidence 66555566666666554
No 132
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=25.45 E-value=1.1e+02 Score=29.64 Aligned_cols=34 Identities=32% Similarity=0.256 Sum_probs=29.5
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
.+||+|++-. .+..++..|...||. +..|.|++.
T Consensus 275 ~~IVF~~tk~--------------~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKR--------------LVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHH--------------HHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5899999887 888999999999995 888888854
No 133
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=24.87 E-value=1.6e+02 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.7
Q ss_pred CCCcEEEEcCCCCC
Q 026302 176 KDAKIIVACATGGT 189 (240)
Q Consensus 176 ~~~~IVvyC~~G~~ 189 (240)
.+.+|+|.|..|..
T Consensus 38 ~~~pvlVHC~~G~g 51 (105)
T smart00404 38 SSGPVVVHCSAGVG 51 (105)
T ss_pred CCCCEEEEeCCCCC
Confidence 46799999999973
No 134
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=24.87 E-value=1.6e+02 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.7
Q ss_pred CCCcEEEEcCCCCC
Q 026302 176 KDAKIIVACATGGT 189 (240)
Q Consensus 176 ~~~~IVvyC~~G~~ 189 (240)
.+.+|+|.|..|..
T Consensus 38 ~~~pvlVHC~~G~g 51 (105)
T smart00012 38 SSGPVVVHCSAGVG 51 (105)
T ss_pred CCCCEEEEeCCCCC
Confidence 46799999999973
No 135
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=24.65 E-value=50 Score=29.83 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=48.0
Q ss_pred hhhcccCCCCCCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCch-----hhHHHHHHHHHHHCCCCceEEcc--
Q 026302 151 FAFFGIFSGTEENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQ-----QSRSLIAAYLLVLNGYKNVYHLE-- 223 (240)
Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~-----~~rs~~aa~~L~~~G~~nV~~l~-- 223 (240)
|.|.|+-.|...-+++...++..+..+.++|+++.+|+- -|-||- +..-..|...|++.|..-|.+|.
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGA-----RMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~P 205 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGA-----RMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDP 205 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcch-----hHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 456666666566678888887788888999999999972 111111 11112344556677877677775
Q ss_pred --ccHHH-HHhCC
Q 026302 224 --GGLYK-WFKEE 233 (240)
Q Consensus 224 --GG~~~-W~~~g 233 (240)
||..+ |.-.|
T Consensus 206 TtGGVsASfA~lG 218 (294)
T COG0777 206 TTGGVSASFAMLG 218 (294)
T ss_pred CccchhHhHHhcc
Confidence 66543 44333
No 136
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=24.29 E-value=1.6e+02 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHhcC--CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcccc
Q 026302 164 PEFLQSVESQL--DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 225 (240)
Q Consensus 164 ~~~~~~~~~~i--~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG 225 (240)
.-|+..+.... ..+++++|+..+| .+..+++.|...|..+|.+++--
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGG---------------aaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGG---------------AGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcH---------------HHHHHHHHHHHcCCCEEEEECCC
Confidence 34444443322 2345676665544 67888999999999889888643
No 137
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.06 E-value=1.2e+02 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
.+++..||||.+-. .+..++..|...|+. +..|-||+.
T Consensus 224 ~~~~~~IIF~~s~~--------------~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 224 FKGKSGIIYCPSRK--------------KSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred cCCCceEEEECcHH--------------HHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 45667799999876 888999999999985 777778764
No 138
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=22.86 E-value=1.3e+02 Score=28.77 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=33.1
Q ss_pred cHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH-C----CCCceEEccccHHHHH
Q 026302 163 NPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-N----GYKNVYHLEGGLYKWF 230 (240)
Q Consensus 163 ~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~-~----G~~nV~~l~GG~~~W~ 230 (240)
..++.+++.+..+.+-..++||++|. .|-.+|-.|.. . |-..|..+.|+|-+|.
T Consensus 119 ~~~lAe~L~~~~p~~~~~v~f~~SGs--------------EA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 119 RALLAKTLAALTPGKLKYSFFCNSGT--------------ESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCch--------------HHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 34555555444444445788899986 56655555533 2 6556777888776653
No 139
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=22.84 E-value=4.5e+02 Score=23.61 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEcccc---HHHHHhCCCCC
Q 026302 167 LQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG---LYKWFKEELPE 236 (240)
Q Consensus 167 ~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG---~~~W~~~g~pv 236 (240)
.+.+.+.+..++.|+++++.|. |+.. +........+++.|++ |.++.|- ..+....|+|.
T Consensus 74 ~~~i~~~l~~G~~ValvSdaGd---P~I~------dpg~~Lv~~~~~~gi~-v~vIPGiSA~~aA~a~sG~~~ 136 (287)
T PRK14994 74 AETLLAKLQEGQNIALVSDAGT---PLIN------DPGYHLVRTCREAGIR-VVPLPGPCAAITALSAAGLPS 136 (287)
T ss_pred HHHHHHHHHCCCeEEEEccCCC---Ccee------CCHHHHHHHHHHCCCC-EEEeCCHHHHHHHHHHcCCCC
Confidence 3444445677888999987775 3332 3556788888888996 8888874 23556667763
No 140
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.94 E-value=2.3e+02 Score=27.15 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=34.9
Q ss_pred cHHHHHHHHhcCCCCC-cEEEEcCCCCCCCCCCCCCCchhhH-HHHHHHHHHHCCCCceEEccccHH
Q 026302 163 NPEFLQSVESQLDKDA-KIIVACATGGTMKPSQNLPEGQQSR-SLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 163 ~~~~~~~~~~~i~~~~-~IVvyC~~G~~~~~~~~~~~~~~~r-s~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
+.+|+.++.+.+.-+. +||+-.+.++ --|=++++..+++. |..+...-...||+ -.+||-.+.
T Consensus 63 F~~~V~~iA~~~gf~~~~iiLggDHlG-Pn~Wq~lpa~eAM~~A~~li~ayV~AGF~-kIHLD~Sm~ 127 (420)
T TIGR02810 63 FRDFVETIADRIGFPRDRLILGGDHLG-PNPWQHLPADEAMAKAAALVDAYVEAGFT-KIHLDASMG 127 (420)
T ss_pred HHHHHHHHHHHcCCChhcEEeecCCCC-CccccCCCHHHHHHHHHHHHHHHHHcCCc-eEEecCCCC
Confidence 3555666655555444 5555555544 11245777554444 44566666789997 445554443
No 141
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.69 E-value=2e+02 Score=22.92 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=35.3
Q ss_pred hcCCCCCcEEEE------cCCCCCCCCCCCCCCchhhHHHHHH-HHHHHCCC--CceEEccccHHHHHhCCCC
Q 026302 172 SQLDKDAKIIVA------CATGGTMKPSQNLPEGQQSRSLIAA-YLLVLNGY--KNVYHLEGGLYKWFKEELP 235 (240)
Q Consensus 172 ~~i~~~~~IVvy------C~~G~~~~~~~~~~~~~~~rs~~aa-~~L~~~G~--~nV~~l~GG~~~W~~~g~p 235 (240)
+.+.++++|++| ..+|..|+|.|- +|.-+. ..|+..+- .=|.++.|-...|+.-..|
T Consensus 20 ~~~~n~~~ifvlF~gskd~~tGqSWCPdCV-------~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 20 KNVENGKTIFVLFLGSKDDTTGQSWCPDCV-------AAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHhCCceEEEEEecccCCCCCCcCCchHH-------HhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCc
Confidence 455566666554 455778889883 444443 34554543 3356778999999876544
No 142
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.56 E-value=1.2e+02 Score=28.32 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
...+++|||++-. .+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~--------------~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRE--------------RVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChH--------------HHHHHHHHHHhCCCC-EEEecCCCC
Confidence 4567899999876 888999999999985 888888764
No 143
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.17 E-value=76 Score=24.33 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCe-EEEEcCC
Q 026302 97 AKEALRLQKENNF-VILDVRP 116 (240)
Q Consensus 97 ~~el~~~l~~~~~-~lIDvR~ 116 (240)
.+++.+.+...++ +|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 4567777766554 8999994
No 144
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=21.14 E-value=1.6e+02 Score=27.32 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=17.1
Q ss_pred hcCCCe-EEEEcCChhhhh-hCCCCCCeeech
Q 026302 104 QKENNF-VILDVRPEAEFK-EAHPPGAINVQI 133 (240)
Q Consensus 104 l~~~~~-~lIDvR~~~ey~-~ghIpGAinip~ 133 (240)
+++++. +-|+||...-|- ...++|.=-+|+
T Consensus 138 L~nPd~~i~vei~~~~ayi~~~~~~g~gGlP~ 169 (371)
T TIGR00342 138 LTNPDITVHIEIREDEFLIITERYEGIGGLPV 169 (371)
T ss_pred ccCCCEEEEEEEECCEEEEEEEeEecCCCcCc
Confidence 345554 458888765554 345666655554
No 145
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.11 E-value=1.1e+02 Score=23.05 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=23.5
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH----HHCCCCceEEccccHHHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL----VLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L----~~~G~~nV~~l~GG~~~W 229 (240)
+|++.|.+|. .+..++..+ ++.|++ +.+...+...-
T Consensus 2 ~Ill~C~~Ga--------------SSs~la~km~~~a~~~gi~-~~i~a~~~~e~ 41 (99)
T cd05565 2 NVLVLCAGGG--------------TSGLLANALNKGAKERGVP-LEAAAGAYGSH 41 (99)
T ss_pred EEEEECCCCC--------------CHHHHHHHHHHHHHHCCCc-EEEEEeeHHHH
Confidence 5899998885 566555554 557874 66666655543
No 146
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.90 E-value=1.1e+02 Score=28.54 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
...+++|||++-. .+..++..|...|+. +..+.|++.
T Consensus 254 ~~~~~lVF~~t~~--------------~~~~l~~~L~~~g~~-v~~lhg~~~ 290 (423)
T PRK04837 254 WPDRAIIFANTKH--------------RCEEIWGHLAADGHR-VGLLTGDVA 290 (423)
T ss_pred CCCeEEEEECCHH--------------HHHHHHHHHHhCCCc-EEEecCCCC
Confidence 3567899999876 788899999999995 888888753
No 147
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=20.59 E-value=3e+02 Score=24.73 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhH----HHHHHHHHHHCCCCceEEccccHHHHHhC
Q 026302 161 EENPEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR----SLIAAYLLVLNGYKNVYHLEGGLYKWFKE 232 (240)
Q Consensus 161 ~~~~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~r----s~~aa~~L~~~G~~nV~~l~GG~~~W~~~ 232 (240)
.+..+|++++...-.-++.+||+..... +.+...+ +...|.+|+..|+ ||.++-..+..|..+
T Consensus 110 ~ev~e~~~~~~~~~~~~~tvvv~~t~d~--------~~~~r~~a~~~a~aiAE~fr~~G~-~Vlvl~DslTr~A~A 176 (274)
T cd01132 110 STVAQVVKTLEEHGAMEYTIVVAATASD--------PAPLQYLAPYTGCAMGEYFMDNGK-HALIIYDDLSKQAVA 176 (274)
T ss_pred HHHHHHHHHHHhcCccceeEEEEeCCCC--------chhHHHHHHHHHHHHHHHHHHCCC-CEEEEEcChHHHHHH
Confidence 3446777777543333344555544332 2222222 5667888889997 588887888877543
No 148
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.58 E-value=1.2e+02 Score=22.32 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=22.3
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH----HHCCCCceEEccccHHHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL----VLNGYKNVYHLEGGLYKW 229 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L----~~~G~~nV~~l~GG~~~W 229 (240)
+|++.|.+|. .+..++..+ ++.|++ +.+-..++..-
T Consensus 1 kIl~~Cg~G~--------------sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 1 KILLVCSAGM--------------STSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred CEEEEcCCCc--------------hHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 4899999997 344455544 456875 55555555443
No 149
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.57 E-value=1.3e+02 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.7
Q ss_pred cEEEEcCCCC
Q 026302 179 KIIVACATGG 188 (240)
Q Consensus 179 ~IVvyC~~G~ 188 (240)
+|+++|.+|.
T Consensus 1 kilvvC~~G~ 10 (86)
T cd05563 1 KILAVCGSGL 10 (86)
T ss_pred CEEEECCCCc
Confidence 4899999997
No 150
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.41 E-value=1.2e+02 Score=22.97 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=22.6
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHH----HHCCCCceEEccccHHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL----VLNGYKNVYHLEGGLYK 228 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L----~~~G~~nV~~l~GG~~~ 228 (240)
+|++.|.+|. .+..++..+ ++.|++ +.+-..+...
T Consensus 3 kILlvCg~G~--------------STSlla~k~k~~~~e~gi~-~~i~a~~~~e 41 (104)
T PRK09590 3 KALIICAAGM--------------SSSMMAKKTTEYLKEQGKD-IEVDAITATE 41 (104)
T ss_pred EEEEECCCch--------------HHHHHHHHHHHHHHHCCCc-eEEEEecHHH
Confidence 6899999997 444555544 456875 5555555444
No 151
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=20.35 E-value=74 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCC
Q 026302 164 PEFLQSVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 217 (240)
Q Consensus 164 ~~~~~~~~~~i~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~ 217 (240)
.++++.+ ...+.+++|..+++.. .....+..|+.+|++
T Consensus 20 ~e~l~~L---~~~g~~~~~lTNns~~-------------s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDAL---RERGKPVVFLTNNSSR-------------SREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHH---HHTTSEEEEEES-SSS--------------HHHHHHHHHHTTTT
T ss_pred HHHHHHH---HHcCCCEEEEeCCCCC-------------CHHHHHHHHHhcCcC
Confidence 4445544 3446788888888751 335677777888874
No 152
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=20.23 E-value=1.4e+02 Score=26.42 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccc
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG 224 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~G 224 (240)
++++++|+..+| .+..+++.|.++|+.+|.++.-
T Consensus 124 ~~k~vlvlGaGG---------------aarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 124 AGFRGLVIGAGG---------------TSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred CCceEEEEcCcH---------------HHHHHHHHHHHcCCCeEEEEeC
Confidence 456777776554 5777888899999998988764
No 153
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.22 E-value=1.1e+02 Score=30.07 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 175 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 175 ~~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
..+.+++|||++-. .+..++..|...|+. +..|.|++.
T Consensus 255 ~~~~k~LVF~nt~~--------------~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKA--------------FVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHH--------------HHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 35678999999876 888999999999995 888888754
No 154
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=20.20 E-value=1.2e+02 Score=20.44 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=14.9
Q ss_pred cEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHH
Q 026302 179 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 213 (240)
Q Consensus 179 ~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~ 213 (240)
+|+++|..|. ..+..+...|++
T Consensus 1 ~il~vc~~G~-------------~~s~~l~~~l~~ 22 (84)
T cd00133 1 KILVVCGSGI-------------GSSSMLAEKLEK 22 (84)
T ss_pred CEEEECCCcH-------------hHHHHHHHHHHH
Confidence 4789999995 256666665554
No 155
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=20.11 E-value=1.6e+02 Score=32.03 Aligned_cols=37 Identities=22% Similarity=0.076 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCchhhHHHHHHHHHHHCCCCceEEccccHH
Q 026302 176 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY 227 (240)
Q Consensus 176 ~~~~IVvyC~~G~~~~~~~~~~~~~~~rs~~aa~~L~~~G~~nV~~l~GG~~ 227 (240)
.+...||||.+-. .+..++..|...|+. +..|-||+.
T Consensus 679 ~~esgIIYC~SRk--------------e~E~LAe~L~~~Gik-a~~YHAGLs 715 (1195)
T PLN03137 679 FDECGIIYCLSRM--------------DCEKVAERLQEFGHK-AAFYHGSMD 715 (1195)
T ss_pred cCCCceeEeCchh--------------HHHHHHHHHHHCCCC-eeeeeCCCC
Confidence 3556899999876 788899999999996 888889874
Done!