Query 026303
Match_columns 240
No_of_seqs 225 out of 688
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.2 6.7E-11 1.4E-15 85.7 6.8 48 192-239 3-50 (65)
2 KOG4005 Transcription factor X 99.1 1.3E-10 2.9E-15 104.9 7.8 62 178-239 53-114 (292)
3 KOG3584 cAMP response element 99.0 2E-10 4.3E-15 106.1 5.4 52 188-239 285-336 (348)
4 PF00170 bZIP_1: bZIP transcri 99.0 5.4E-10 1.2E-14 80.9 6.6 48 192-239 3-50 (64)
5 PF07716 bZIP_2: Basic region 99.0 1.4E-09 3E-14 76.7 7.0 48 191-239 2-49 (54)
6 KOG4343 bZIP transcription fac 99.0 1E-09 2.2E-14 107.9 6.6 51 188-238 275-325 (655)
7 KOG0709 CREB/ATF family transc 98.8 3.7E-09 7.9E-14 102.5 4.3 52 189-240 246-297 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 1.3E-06 2.8E-11 67.7 -1.0 46 187-232 23-68 (92)
9 KOG0837 Transcriptional activa 97.0 0.0018 4E-08 59.6 6.3 42 196-237 208-249 (279)
10 KOG3119 Basic region leucine z 96.5 0.006 1.3E-07 55.9 6.1 54 186-239 186-239 (269)
11 KOG4571 Activating transcripti 96.5 0.0058 1.3E-07 57.0 6.1 46 194-239 227-272 (294)
12 KOG4196 bZIP transcription fac 95.7 0.056 1.2E-06 45.4 7.7 53 186-238 45-104 (135)
13 KOG3863 bZIP transcription fac 95.4 0.012 2.6E-07 59.6 3.2 43 196-238 492-534 (604)
14 KOG1414 Transcriptional activa 83.5 0.048 1E-06 52.4 -5.8 49 190-238 150-202 (395)
15 KOG1414 Transcriptional activa 80.5 0.22 4.7E-06 48.0 -2.6 50 186-235 277-326 (395)
16 PF01166 TSC22: TSC-22/dip/bun 79.8 3.3 7.1E-05 30.5 3.9 23 215-237 21-43 (59)
17 PRK00888 ftsB cell division pr 72.3 8.9 0.00019 30.6 5.0 28 212-239 31-58 (105)
18 PF04977 DivIC: Septum formati 72.0 11 0.00023 27.2 5.0 28 212-239 21-48 (80)
19 KOG1318 Helix loop helix trans 68.8 11 0.00024 37.2 5.7 53 186-239 235-314 (411)
20 PF07558 Shugoshin_N: Shugoshi 68.1 5.2 0.00011 27.6 2.4 42 196-238 3-44 (46)
21 PF01486 K-box: K-box region; 67.6 16 0.00036 28.2 5.5 34 207-240 63-100 (100)
22 PF13863 DUF4200: Domain of un 60.1 62 0.0014 25.4 7.7 49 191-239 57-105 (126)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.3 62 0.0013 26.3 7.7 46 195-240 85-130 (132)
24 PF03980 Nnf1: Nnf1 ; InterPr 59.1 15 0.00033 28.7 4.0 27 213-239 78-104 (109)
25 KOG3119 Basic region leucine z 57.4 37 0.0008 31.2 6.7 28 211-238 218-245 (269)
26 KOG4797 Transcriptional regula 57.0 16 0.00034 30.3 3.7 25 212-236 71-95 (123)
27 TIGR02209 ftsL_broad cell divi 55.8 39 0.00084 24.8 5.5 28 212-239 28-55 (85)
28 PF02183 HALZ: Homeobox associ 55.5 24 0.00051 24.3 3.9 26 213-239 11-36 (45)
29 PRK13169 DNA replication intia 54.6 19 0.00041 29.4 3.8 27 213-239 27-53 (110)
30 PF14077 WD40_alt: Alternative 52.9 12 0.00026 26.5 2.1 22 214-235 17-38 (48)
31 PF14197 Cep57_CLD_2: Centroso 52.7 64 0.0014 24.0 6.1 42 195-236 27-68 (69)
32 PF08172 CASP_C: CASP C termin 52.5 24 0.00052 32.3 4.6 44 194-238 87-130 (248)
33 PF12709 Kinetocho_Slk19: Cent 52.1 28 0.0006 27.5 4.2 27 213-239 47-73 (87)
34 PF07716 bZIP_2: Basic region 48.4 89 0.0019 21.6 7.9 45 193-237 7-54 (54)
35 PRK10884 SH3 domain-containing 47.3 1E+02 0.0022 27.4 7.7 26 214-239 124-149 (206)
36 PF06156 DUF972: Protein of un 46.3 30 0.00065 27.9 3.8 26 214-239 28-53 (107)
37 PF05103 DivIVA: DivIVA protei 44.7 37 0.0008 26.7 4.1 25 215-239 25-49 (131)
38 PF06698 DUF1192: Protein of u 42.1 39 0.00085 24.7 3.5 22 217-238 23-44 (59)
39 KOG2829 E2F-like protein [Tran 41.8 69 0.0015 30.7 5.9 19 211-229 149-167 (326)
40 PF12808 Mto2_bdg: Micro-tubul 40.2 64 0.0014 23.1 4.2 42 195-239 5-46 (52)
41 KOG0709 CREB/ATF family transc 39.2 53 0.0012 33.0 5.0 53 186-238 247-309 (472)
42 KOG4343 bZIP transcription fac 38.4 1E+02 0.0022 32.0 6.8 52 188-239 279-333 (655)
43 PF07047 OPA3: Optic atrophy 3 38.2 77 0.0017 26.1 5.1 39 192-236 95-133 (134)
44 PF06305 DUF1049: Protein of u 37.4 48 0.001 23.3 3.4 11 223-233 56-66 (68)
45 KOG4005 Transcription factor X 37.3 1.5E+02 0.0033 27.8 7.3 55 185-239 64-121 (292)
46 COG5562 Phage envelope protein 37.1 16 0.00035 31.0 0.9 18 126-143 86-106 (137)
47 PF06156 DUF972: Protein of un 37.0 51 0.0011 26.6 3.8 25 215-239 22-46 (107)
48 PF04999 FtsL: Cell division p 36.6 93 0.002 23.6 5.0 24 216-239 43-66 (97)
49 PF00170 bZIP_1: bZIP transcri 35.3 1.6E+02 0.0035 20.8 7.8 48 191-238 6-56 (64)
50 PRK09413 IS2 repressor TnpA; R 34.4 64 0.0014 25.7 4.0 23 216-238 79-101 (121)
51 KOG1962 B-cell receptor-associ 33.4 1.4E+02 0.0029 27.3 6.2 45 195-239 166-210 (216)
52 KOG0561 bHLH transcription fac 32.9 30 0.00065 33.3 2.1 30 210-239 100-129 (373)
53 PRK13922 rod shape-determining 32.9 1.5E+02 0.0032 26.6 6.5 39 201-239 69-110 (276)
54 PF07047 OPA3: Optic atrophy 3 32.5 94 0.002 25.6 4.7 24 216-239 106-129 (134)
55 COG5509 Uncharacterized small 32.3 71 0.0015 23.9 3.5 22 217-238 27-48 (65)
56 cd07429 Cby_like Chibby, a nuc 31.8 62 0.0013 26.4 3.5 14 226-239 83-96 (108)
57 PF12999 PRKCSH-like: Glucosid 31.6 2.8E+02 0.0061 24.4 7.8 28 211-238 142-169 (176)
58 PF08563 P53_TAD: P53 transact 31.4 29 0.00063 21.5 1.1 17 89-105 6-22 (25)
59 TIGR02894 DNA_bind_RsfA transc 31.0 1.1E+02 0.0025 26.6 5.1 29 211-239 107-135 (161)
60 KOG3335 Predicted coiled-coil 31.0 1.9E+02 0.0041 25.7 6.6 27 211-237 109-135 (181)
61 PF06785 UPF0242: Uncharacteri 30.4 74 0.0016 31.1 4.3 26 211-236 197-222 (401)
62 PRK13169 DNA replication intia 30.2 78 0.0017 25.8 3.8 25 215-239 22-46 (110)
63 PF05377 FlaC_arch: Flagella a 29.5 64 0.0014 23.4 2.8 20 220-239 12-31 (55)
64 smart00340 HALZ homeobox assoc 29.2 76 0.0016 22.1 3.0 18 222-239 12-29 (44)
65 PRK13729 conjugal transfer pil 29.2 2E+02 0.0043 29.1 7.2 25 215-239 97-121 (475)
66 PF12709 Kinetocho_Slk19: Cent 28.8 99 0.0021 24.4 4.0 28 212-239 39-66 (87)
67 PF04568 IATP: Mitochondrial A 28.5 2.1E+02 0.0045 23.0 5.9 12 227-238 88-99 (100)
68 PF14645 Chibby: Chibby family 28.1 75 0.0016 25.9 3.4 14 225-238 81-94 (116)
69 PF06005 DUF904: Protein of un 28.1 1.1E+02 0.0024 23.0 4.1 16 222-237 39-54 (72)
70 PF13851 GAS: Growth-arrest sp 28.1 3.3E+02 0.0072 23.9 7.7 44 195-238 73-116 (201)
71 PF11559 ADIP: Afadin- and alp 26.9 3.2E+02 0.007 22.3 7.1 42 197-238 48-89 (151)
72 PF10224 DUF2205: Predicted co 26.9 3E+02 0.0065 21.3 7.9 22 215-236 37-58 (80)
73 KOG1103 Predicted coiled-coil 26.8 1.4E+02 0.003 29.7 5.5 48 189-239 109-156 (561)
74 PF05377 FlaC_arch: Flagella a 26.6 1.1E+02 0.0024 22.2 3.7 21 218-238 3-23 (55)
75 PF10482 CtIP_N: Tumour-suppre 26.5 1.3E+02 0.0028 25.1 4.5 30 209-238 90-119 (120)
76 PF01166 TSC22: TSC-22/dip/bun 26.5 1.1E+02 0.0023 22.7 3.6 23 217-239 16-38 (59)
77 PRK14474 F0F1 ATP synthase sub 26.0 3.7E+02 0.0081 24.3 7.9 49 187-235 29-77 (250)
78 KOG0288 WD40 repeat protein Ti 25.4 2.7E+02 0.0058 28.0 7.1 24 214-237 47-70 (459)
79 TIGR02449 conserved hypothetic 25.4 1.2E+02 0.0026 22.6 3.8 14 225-238 17-30 (65)
80 smart00243 GAS2 Growth-Arrest- 25.1 33 0.00072 26.3 0.8 13 126-138 54-66 (73)
81 cd08533 SAM_PNT-ETS-1,2 Steril 24.6 35 0.00075 25.7 0.8 15 126-140 40-54 (71)
82 COG1792 MreC Cell shape-determ 24.3 1.2E+02 0.0026 28.1 4.5 24 215-238 83-106 (284)
83 KOG4571 Activating transcripti 24.2 5.7E+02 0.012 24.4 8.8 46 192-237 229-277 (294)
84 TIGR00219 mreC rod shape-deter 23.8 1.3E+02 0.0028 27.8 4.5 22 218-239 87-108 (283)
85 KOG2483 Upstream transcription 23.5 1.2E+02 0.0026 27.7 4.2 29 211-239 101-136 (232)
86 PF14775 NYD-SP28_assoc: Sperm 23.0 1.1E+02 0.0024 22.1 3.2 20 219-238 37-56 (60)
87 cd08540 SAM_PNT-ERG Sterile al 22.7 41 0.0009 25.5 0.9 17 126-142 42-58 (75)
88 CHL00118 atpG ATP synthase CF0 22.6 4.5E+02 0.0097 21.8 7.8 44 188-231 47-90 (156)
89 KOG0837 Transcriptional activa 22.6 2.6E+02 0.0056 26.5 6.2 48 192-239 208-265 (279)
90 PRK05759 F0F1 ATP synthase sub 22.4 4.2E+02 0.0092 21.4 7.9 49 187-235 28-76 (156)
91 cd08203 SAM_PNT Sterile alpha 22.2 42 0.00091 24.4 0.8 16 125-140 37-52 (66)
92 PF13747 DUF4164: Domain of un 22.0 3.8E+02 0.0082 20.7 7.0 45 193-237 10-54 (89)
93 TIGR03752 conj_TIGR03752 integ 21.6 1.1E+02 0.0024 30.9 3.8 20 218-237 76-95 (472)
94 PRK09413 IS2 repressor TnpA; R 21.5 1.2E+02 0.0027 24.1 3.5 11 219-229 89-99 (121)
95 PF08232 Striatin: Striatin fa 21.4 3.9E+02 0.0084 22.1 6.5 41 198-238 15-55 (134)
96 PRK13454 F0F1 ATP synthase sub 21.3 5.2E+02 0.011 22.1 7.8 46 187-232 55-100 (181)
97 PRK09174 F0F1 ATP synthase sub 21.2 5.6E+02 0.012 22.6 7.9 42 187-228 77-118 (204)
98 PF07439 DUF1515: Protein of u 21.0 4.8E+02 0.01 21.6 6.9 46 194-239 18-64 (112)
99 cd08757 SAM_PNT_ESE Sterile al 21.0 47 0.001 24.5 0.8 16 125-140 39-54 (68)
100 PF02370 M: M protein repeat; 20.9 2E+02 0.0044 17.1 3.6 18 218-235 4-21 (21)
101 PRK14471 F0F1 ATP synthase sub 20.7 4.9E+02 0.011 21.5 7.9 45 187-231 32-76 (164)
102 PF10473 CENP-F_leu_zip: Leuci 20.2 4.4E+02 0.0096 22.3 6.7 47 192-238 29-75 (140)
103 smart00251 SAM_PNT SAM / Point 20.2 48 0.001 25.3 0.8 53 87-139 11-66 (82)
104 KOG4196 bZIP transcription fac 20.1 1.2E+02 0.0026 25.8 3.1 12 227-238 79-90 (135)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.18 E-value=6.7e-11 Score=85.73 Aligned_cols=48 Identities=54% Similarity=0.639 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++++.+|+++||+||++||.||++|+.+||.++..|+.+|..|+.+++
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999998864
No 2
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.13 E-value=1.3e-10 Score=104.91 Aligned_cols=62 Identities=37% Similarity=0.451 Sum_probs=58.1
Q ss_pred CcCCCCCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 178 TPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 178 ~~grkR~~~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+.|||.+.++...+||-+||++|||.+|+-+|.|||+++.++|.++..|.+||+.|+.+.+
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999889999999999999999999999999999999999999999999999987764
No 3
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.05 E-value=2e-10 Score=106.12 Aligned_cols=52 Identities=35% Similarity=0.445 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.|....||+-|++||||+|+.+|+|||+|++|||.+|+.||.+|..|..|+.
T Consensus 285 aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELK 336 (348)
T KOG3584|consen 285 AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELK 336 (348)
T ss_pred chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHH
Confidence 4556778889999999999999999999999999999999999999988875
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.05 E-value=5.4e-10 Score=80.87 Aligned_cols=48 Identities=52% Similarity=0.676 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.+++
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999998764
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=1.4e-09 Score=76.71 Aligned_cols=48 Identities=48% Similarity=0.647 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 191 ~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++++.||. +||+||++||.||++|+.+|+.+|..|+.+|..|..+++
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778887 999999999999999999999999999999999998875
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.96 E-value=1e-09 Score=107.95 Aligned_cols=51 Identities=41% Similarity=0.529 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.|...-||+.|||||||||+.||+|||+|+..||.++..|..||+.|++|.
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~EN 325 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKEN 325 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677888899999999999999999999999998877766666666654
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.80 E-value=3.7e-09 Score=102.49 Aligned_cols=52 Identities=42% Similarity=0.613 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026303 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKTT 240 (240)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e~ 240 (240)
|+..-||-||+|+|++||+.||+|||+|++.||.+|.....||++|++++++
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~ 297 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE 297 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH
Confidence 3445668899999999999999999999999999999999999999998863
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.93 E-value=1.3e-06 Score=67.72 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENL 232 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~ 232 (240)
..+...-|..||.+|||.+|+.||.||..++.+||.++..|..+..
T Consensus 23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~ 68 (92)
T PF03131_consen 23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIE 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556888999999999999999999999999999876554433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=96.96 E-value=0.0018 Score=59.63 Aligned_cols=42 Identities=36% Similarity=0.463 Sum_probs=35.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 196 ~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q 237 (240)
.|..++||++|.+||+||-.++..||.+|..|..+|..|-..
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~ 249 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASE 249 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 344689999999999999999999999999888877766443
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.49 E-value=0.006 Score=55.88 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=43.1
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+.++.+.+-..|.-+|=++|+|||.+.+....++..+|..|+.||+.|+.+++
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444344446888999999999988889999999999999999999886
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.48 E-value=0.0058 Score=57.03 Aligned_cols=46 Identities=28% Similarity=0.471 Sum_probs=39.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+..|..+.|..+|.|=|.||++-.+.|+.+...|+.+|.+||.+.+
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~ 272 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQAS 272 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334457777789999999999999999999999999999998864
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=95.70 E-value=0.056 Score=45.38 Aligned_cols=53 Identities=32% Similarity=0.423 Sum_probs=39.1
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhh
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSK-------VSRLEEENLKLKKEK 238 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~-------v~~L~~EN~~L~~q~ 238 (240)
.-.|..--|..||-+|||==|+-+|.|.-..-.+||.+ |++|.+||.+++.++
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566789999999999999998888888875 555666666666554
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.39 E-value=0.012 Score=59.61 Aligned_cols=43 Identities=33% Similarity=0.454 Sum_probs=40.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 196 ~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.||.=|||.+|+++|+||-.-|..||.+|..|..|-++|.++.
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er 534 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER 534 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999998875
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=83.52 E-value=0.048 Score=52.38 Aligned_cols=49 Identities=31% Similarity=0.345 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 026303 190 KSIERRLRRKIKNRESAAR---SRARKQAYHNELVSKVSRLE-EENLKLKKEK 238 (240)
Q Consensus 190 ~~~err~rR~ikNReSA~r---SR~RKqay~~eLE~~v~~L~-~EN~~L~~q~ 238 (240)
..+.++..|+.+|+.+|++ +|.|++.|+.+|..+|+.|+ .+|..|..++
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~i 202 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQI 202 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccc
Confidence 4578888899999999999 99999999999999999999 7666655544
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=80.52 E-value=0.22 Score=47.95 Aligned_cols=50 Identities=34% Similarity=0.355 Sum_probs=42.5
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~ 235 (240)
...+..+++++|=..+||.+|-++|.|||-....|+.+...+..+|..|.
T Consensus 277 ~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 277 TVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred ccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 44556677786669999999999999999999999999988888887766
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=79.83 E-value=3.3 Score=30.51 Aligned_cols=23 Identities=43% Similarity=0.421 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026303 215 AYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q 237 (240)
..+.+|+.++.+|+.||..|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45779999999999999999864
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.29 E-value=8.9 Score=30.58 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..++.+.+++.++..|+.+|..|+++++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666653
No 18
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.05 E-value=11 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..++.+.+|+.+++.|+.+|..|+.+++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888765
No 19
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=68.77 E-value=11 Score=37.19 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=32.2
Q ss_pred chhhhHHHHHHHHHHHhhHH-------------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 186 NAFEKSIERRLRRKIKNRES-------------------------AARSR--ARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReS-------------------------A~rSR--~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.| ..+|||+|-.|.+|.- +-.-| +++.+.+.|++.+-..|+..|.+|..++
T Consensus 235 d~H-NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~ri 313 (411)
T KOG1318|consen 235 DNH-NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRI 313 (411)
T ss_pred hhh-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence 444 4578888878888742 22222 3344555666666667777777777766
Q ss_pred c
Q 026303 239 T 239 (240)
Q Consensus 239 e 239 (240)
+
T Consensus 314 e 314 (411)
T KOG1318|consen 314 E 314 (411)
T ss_pred H
Confidence 5
No 20
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=68.14 E-value=5.2 Score=27.63 Aligned_cols=42 Identities=33% Similarity=0.337 Sum_probs=13.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 196 ~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.++...|++=|+..-.. ...+.+||.++.+|..||..|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l-~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSAL-SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHH-HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 34555666655544433 2457899999999999999999875
No 21
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.59 E-value=16 Score=28.21 Aligned_cols=34 Identities=38% Similarity=0.458 Sum_probs=26.2
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026303 207 ARSRARKQ----AYHNELVSKVSRLEEENLKLKKEKTT 240 (240)
Q Consensus 207 ~rSR~RKq----ay~~eLE~~v~~L~~EN~~L~~q~e~ 240 (240)
.+-|.||. ..+..|..++..|..+|..|+.++++
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444 45678889999999999999999874
No 22
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=60.06 E-value=62 Score=25.43 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 191 ~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..+.+..|-++.-+.+.+.+..|.+-+..|..++..|..++..|..+++
T Consensus 57 en~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 57 ENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777778888888888888999999999888887764
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.26 E-value=62 Score=26.32 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=36.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKTT 240 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e~ 240 (240)
....+..++.|+..-+..=..-+.+++.++..|..+|.-|..|+|.
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666677777777777777888889999999999999999873
No 24
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=59.15 E-value=15 Score=28.69 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|+.++..|...+..++.+|..|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999998875
No 25
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=57.44 E-value=37 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.150 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 211 ARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
..-+.++.+||++.+.|+.++..|++++
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666666666665554
No 26
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=56.95 E-value=16 Score=30.30 Aligned_cols=25 Identities=36% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~ 236 (240)
-=++.+.+|+.++..|+.||.-|+.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999988875
No 27
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=55.76 E-value=39 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.....+..++.++..++.||.+|+.++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888888888887764
No 28
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.52 E-value=24 Score=24.33 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|..| +.|..+...|..||..|+.++.
T Consensus 11 K~~y-d~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 11 KASY-DSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7788888888888888888764
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=54.63 E-value=19 Score=29.36 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
=|+++.+|..+-..|+-||..|++.++
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888764
No 30
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=52.91 E-value=12 Score=26.46 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026303 214 QAYHNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~ 235 (240)
+.++.|||.+|..|++.|..|-
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHH
Confidence 3567899999999999998874
No 31
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.70 E-value=64 Score=24.04 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~ 236 (240)
..+++.+-|.+|.++=.-+-..+.+|-.+++.|+.|+..++.
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666677777777777777777777777777777766654
No 32
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.52 E-value=24 Score=32.29 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=25.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+|-|=+.+|.|==..-| +-+.-+..|..+|+.|+..|-+|-.++
T Consensus 87 QRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444544333332 223445778888888888888886654
No 33
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=52.09 E-value=28 Score=27.50 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
=...+.+|+.++..|..||..|+.+++
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888888888765
No 34
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=48.41 E-value=89 Score=21.57 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 193 ERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 193 err~rR~ikNReSA~rSR~RK---qay~~eLE~~v~~L~~EN~~L~~q 237 (240)
.||.+-.+.-+-+-.+-+.+. ...+..|+.+...|..++..|+.+
T Consensus 7 ~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 7 ERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444454444455555555443 467789999999999999999875
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.34 E-value=1e+02 Score=27.42 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+..+..++..+..|+.+|++|+.+++
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666665543
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.32 E-value=30 Score=27.87 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|.++.+|..+-..|+-||..|+..+.
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777653
No 37
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.69 E-value=37 Score=26.74 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.|+..|...+..|..+|..|+.+++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~ 49 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665553
No 38
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.10 E-value=39 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026303 217 HNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.||+..++.|+.|..+++.++
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776654
No 39
>KOG2829 consensus E2F-like protein [Transcription]
Probab=41.78 E-value=69 Score=30.67 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026303 211 ARKQAYHNELVSKVSRLEE 229 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~ 229 (240)
++|++|++||..++..++.
T Consensus 149 ~kK~a~lqEl~~q~~~fkn 167 (326)
T KOG2829|consen 149 KKKAAQLQELIEQVSAFKN 167 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6799999999999987654
No 40
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=40.22 E-value=64 Score=23.11 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|.+-+..+=.+.+.-|..-.. ....++..|+.||..|+.+++
T Consensus 5 Rl~ELe~klkaerE~R~~d~~---~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRS---AARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHhHHhccCCch---hHHHHHHHHHHHHHHHHHHHH
No 41
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=39.24 E-value=53 Score=33.03 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=42.7
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQ----------AYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKq----------ay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+-..+.+.|+.|.|+.--||-++....=. +.-.+|.++|..|+.+|..|..|+
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL 309 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQL 309 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHH
Confidence 44667888999999999999888876543 233789999999999999998876
No 42
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=38.39 E-value=1e+02 Score=32.00 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 188 FEKSIERRLRRKIKNRESAARSR---ARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR---~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..+...|..|-...-..|-++-. .-=++++++|+.+-++|+.||..|++|++
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34445555554444444444444 33568899999999999999999999986
No 43
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=38.20 E-value=77 Score=26.13 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~ 236 (240)
+-.|..|+.++|+.+ .++.+++|+.++..|+.++++++.
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555554443 345678888888888888877764
No 44
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.42 E-value=48 Score=23.34 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 026303 223 KVSRLEEENLK 233 (240)
Q Consensus 223 ~v~~L~~EN~~ 233 (240)
++++++.|+++
T Consensus 56 ~l~~le~e~~~ 66 (68)
T PF06305_consen 56 ELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHh
Confidence 33444444433
No 45
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=37.35 E-value=1.5e+02 Score=27.76 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=36.3
Q ss_pred cchhhhHHHHHHHHHHHhh--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 185 DNAFEKSIERRLRRKIKNR--ESAARSRARKQAY-HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 185 ~~~~e~~~err~rR~ikNR--eSA~rSR~RKqay-~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
....||...|++|-.+.-- ---++.|.-+-+| +.+|+.+-..|..||..|+++.+
T Consensus 64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777433222 2223445555555 67899999999999999988754
No 46
>COG5562 Phage envelope protein [General function prediction only]
Probab=37.13 E-value=16 Score=31.01 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=14.9
Q ss_pred cccchhhHH---Hhhhccccc
Q 026303 126 LGELTLEDF---LVQAGLFAE 143 (240)
Q Consensus 126 lgemTLEDF---LvrAGvv~e 143 (240)
-|+.|+|+| |++|||++=
T Consensus 86 sGqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 86 SGQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred cCCccHHHHHHHHHhCCeEEE
Confidence 377899999 789999873
No 47
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.01 E-value=51 Score=26.55 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+-+.+|...+..|.+||.+|+.+++
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999998864
No 48
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=36.63 E-value=93 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++.++.+..+|+.||..|+-|+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~ 66 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIA 66 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999987764
No 49
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.25 E-value=1.6e+02 Score=20.77 Aligned_cols=48 Identities=31% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 191 SIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 191 ~~err~rR~ikNReSA~rSR~RK---qay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
...|+.+-.+.-|.+-.|-...- ...+..|+.+...|..++..|..++
T Consensus 6 ~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 6 RERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554555555544444332 3445566666666666665555543
No 50
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.40 E-value=64 Score=25.70 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026303 216 YHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.+.+|+.++.+|+.||.-|++..
T Consensus 79 ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 79 QIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887754
No 51
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.42 E-value=1.4e+02 Score=27.26 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+.+...+-=+.|+....-=+.+.+++-.+..+|-+||++|+.+++
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344555555666666644445557888888899999999999986
No 52
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=32.91 E-value=30 Score=33.34 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 210 RARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 210 R~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
=.-...|+.+||.+.-+|-.+|.+|++.+-
T Consensus 100 LQQTa~yI~~Le~~Kt~ll~qn~elKr~~~ 129 (373)
T KOG0561|consen 100 LQQTADYIHQLEGHKTELLPQNGELKRLKL 129 (373)
T ss_pred HHHHHHHHHHHHhcccccccccchHHHHHh
Confidence 344568999999999999999999998763
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.88 E-value=1.5e+02 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc
Q 026303 201 KNRESAARSRARKQAYHNELVSKVS---RLEEENLKLKKEKT 239 (240)
Q Consensus 201 kNReSA~rSR~RKqay~~eLE~~v~---~L~~EN~~L~~q~e 239 (240)
.+....+..-++=++.+.+|+.++. .|+.||.+|++.+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333334444455555444 67888888887653
No 54
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=32.47 E-value=94 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.-++++.+++.|+.+..+|..+++
T Consensus 106 Ke~~~~~~l~~L~~~i~~L~~~~~ 129 (134)
T PF07047_consen 106 KEEELQERLEELEERIEELEEQVE 129 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777776664
No 55
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.27 E-value=71 Score=23.90 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026303 217 HNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.||+.++.-|+.|..+|+.++
T Consensus 27 V~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 27 VAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888765
No 56
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=31.84 E-value=62 Score=26.43 Aligned_cols=14 Identities=50% Similarity=0.456 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhc
Q 026303 226 RLEEENLKLKKEKT 239 (240)
Q Consensus 226 ~L~~EN~~L~~q~e 239 (240)
+|++||+-|+-++|
T Consensus 83 ~LeEENNlLklKie 96 (108)
T cd07429 83 QLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666665554
No 57
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=31.63 E-value=2.8e+02 Score=24.42 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 211 ARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
++|++|+.+...+...++.+..+|+.++
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554
No 58
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=31.35 E-value=29 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=10.7
Q ss_pred ccccccCCchHhhhHHH
Q 026303 89 LARALSGKTVEQVWNEI 105 (240)
Q Consensus 89 lp~~ls~KTVDEVW~dI 105 (240)
+-.+||+-|-++.|+-+
T Consensus 6 ~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 6 PELPLSQETFSDLWNLL 22 (25)
T ss_dssp -----STCCHHHHHHTS
T ss_pred CCCCccHHHHHHHHHhc
Confidence 34579999999999854
No 59
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.98 E-value=1.1e+02 Score=26.63 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 211 ARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+.+..+.+|..++..|+.||..|..+++
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777776543
No 60
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.97 E-value=1.9e+02 Score=25.73 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 211 ARKQAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~EN~~L~~q 237 (240)
+.....+++|+.+++.++.....|..+
T Consensus 109 ~elr~~~~~l~~~i~~~~~~~~~L~~~ 135 (181)
T KOG3335|consen 109 MELRLKVEKLENAIAELTKFFSQLHSK 135 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666544
No 61
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.35 E-value=74 Score=31.12 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 211 ARKQAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 211 ~RKqay~~eLE~~v~~L~~EN~~L~~ 236 (240)
.++|+|+..||.+|..|..|...|..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 62
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.16 E-value=78 Score=25.78 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+-+.+|...+..|.+||..|+.+++
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999998864
No 63
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.48 E-value=64 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 026303 220 LVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 220 LE~~v~~L~~EN~~L~~q~e 239 (240)
++..+..++.||++|+..+|
T Consensus 12 ~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777776654
No 64
>smart00340 HALZ homeobox associated leucin zipper.
Probab=29.23 E-value=76 Score=22.13 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 026303 222 SKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 222 ~~v~~L~~EN~~L~~q~e 239 (240)
.=-+.|.+||.+|+++++
T Consensus 12 rcce~LteeNrRL~ke~~ 29 (44)
T smart00340 12 RCCESLTEENRRLQKEVQ 29 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777777764
No 65
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.15 E-value=2e+02 Score=29.11 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+...++|.+++.|+.||..|+.|++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999999998874
No 66
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=28.82 E-value=99 Score=24.42 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
=|+.|-...+.+|..|+.+|..|.++++
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e 66 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENE 66 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677878888888888888888888876
No 67
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.48 E-value=2.1e+02 Score=22.99 Aligned_cols=12 Identities=25% Similarity=0.124 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhh
Q 026303 227 LEEENLKLKKEK 238 (240)
Q Consensus 227 L~~EN~~L~~q~ 238 (240)
-+++..+|.+++
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 445555555544
No 68
>PF14645 Chibby: Chibby family
Probab=28.12 E-value=75 Score=25.90 Aligned_cols=14 Identities=50% Similarity=0.463 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhh
Q 026303 225 SRLEEENLKLKKEK 238 (240)
Q Consensus 225 ~~L~~EN~~L~~q~ 238 (240)
.+|++||+-|+-++
T Consensus 81 ~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 81 QQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554443
No 69
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.11 E-value=1.1e+02 Score=22.98 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 026303 222 SKVSRLEEENLKLKKE 237 (240)
Q Consensus 222 ~~v~~L~~EN~~L~~q 237 (240)
.+...|+.+|.+|+.+
T Consensus 39 ~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 39 EENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555543
No 70
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.10 E-value=3.3e+02 Score=23.93 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=32.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.+++.+++-++-+.+=..-++.+..++.++..|+-|++.|..++
T Consensus 73 eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~ 116 (201)
T PF13851_consen 73 ELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777788888888777777776654
No 71
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.91 E-value=3.2e+02 Score=22.29 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=26.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 197 RRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 197 rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.|=...|+.......++..-+..|+..+..|+.++..+.+++
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666554
No 72
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.88 E-value=3e+02 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026303 215 AYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~ 236 (240)
.+++....+..+|+.||+-|..
T Consensus 37 ~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 37 DRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666655554
No 73
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.84 E-value=1.4e+02 Score=29.67 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
....|+|+|.+|+.-|.- |.++..|..+-..-+..|+.|-+.|..|+|
T Consensus 109 LaAaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 109 LAAAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIE 156 (561)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 345567777777765543 344555555544455566666666666654
No 74
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.55 E-value=1.1e+02 Score=22.18 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026303 218 NELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q~ 238 (240)
++||.++..++.....+++++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en 23 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKEN 23 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444
No 75
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.54 E-value=1.3e+02 Score=25.11 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 209 SRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 209 SR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
|...--.++..|..+...|+.||..|+.++
T Consensus 90 s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 90 SHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344556778899999999999999999886
No 76
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.47 E-value=1.1e+02 Score=22.68 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 217 HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++.|..++..|+..|..|..+..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887753
No 77
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.03 E-value=3.7e+02 Score=24.33 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~ 235 (240)
|.-+.-++|+.++.++-..|...+..=++...+.+.++..++.+-..+.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777766666666666666665555544443
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.37 E-value=2.7e+02 Score=28.05 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q 237 (240)
++.+.++|.++..|++||..|..+
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999888755
No 79
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.36 E-value=1.2e+02 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 026303 225 SRLEEENLKLKKEK 238 (240)
Q Consensus 225 ~~L~~EN~~L~~q~ 238 (240)
.+|+.||..|+.++
T Consensus 17 ~~L~~EN~~Lr~q~ 30 (65)
T TIGR02449 17 ERLKSENRLLRAQE 30 (65)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554443
No 80
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=25.06 E-value=33 Score=26.29 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.6
Q ss_pred cccchhhHHHhhh
Q 026303 126 LGELTLEDFLVQA 138 (240)
Q Consensus 126 lgemTLEDFLvrA 138 (240)
-|=||||+||.|-
T Consensus 54 GGW~tL~~fL~kh 66 (73)
T smart00243 54 GGWETLDEYLLKH 66 (73)
T ss_pred CcHHHHHHHHHhC
Confidence 3569999999874
No 81
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=24.61 E-value=35 Score=25.67 Aligned_cols=15 Identities=40% Similarity=0.233 Sum_probs=12.6
Q ss_pred cccchhhHHHhhhcc
Q 026303 126 LGELTLEDFLVQAGL 140 (240)
Q Consensus 126 lgemTLEDFLvrAGv 140 (240)
|=.||.|||+.+|+.
T Consensus 40 LC~ls~edF~~~~p~ 54 (71)
T cd08533 40 LCALGKERFLELAPD 54 (71)
T ss_pred HHcCCHHHHHHHcCC
Confidence 556999999999874
No 82
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=24.31 E-value=1.2e+02 Score=28.08 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+-+..+..++..|++||.+|+..+
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999765
No 83
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.22 E-value=5.7e+02 Score=24.42 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNE---LVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~e---LE~~v~~L~~EN~~L~~q 237 (240)
-.||+.|++.---=-+|-|+.+.+-+.| ||++-.+|+..-.+|.++
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555542222223344444444333 334444444444444443
No 84
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.80 E-value=1.3e+02 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 026303 218 NELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+|......|+.||++|++.++
T Consensus 87 ~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445558899999988653
No 85
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=23.47 E-value=1.2e+02 Score=27.72 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Q 026303 211 ARKQAYHNELVS-------KVSRLEEENLKLKKEKT 239 (240)
Q Consensus 211 ~RKqay~~eLE~-------~v~~L~~EN~~L~~q~e 239 (240)
.|+.+|+..|+. .+++|+.||..|+++++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888885 45678888888888875
No 86
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.96 E-value=1.1e+02 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026303 219 ELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 219 eLE~~v~~L~~EN~~L~~q~ 238 (240)
.|..++..|+.+|.+|+.-+
T Consensus 37 ~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999998654
No 87
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=22.73 E-value=41 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.6
Q ss_pred cccchhhHHHhhhcccc
Q 026303 126 LGELTLEDFLVQAGLFA 142 (240)
Q Consensus 126 lgemTLEDFLvrAGvv~ 142 (240)
|=.||-|||+.+|+...
T Consensus 42 LC~LskedF~~~ap~~~ 58 (75)
T cd08540 42 LCKMTKDDFQRLTPSYN 58 (75)
T ss_pred HHhCCHHHHHHHcCCCC
Confidence 55699999999997543
No 88
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.59 E-value=4.5e+02 Score=21.76 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEEN 231 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN 231 (240)
..+.-++|+.++.+.-..|.+.+..-.+...+.+.++...+.+-
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555554444333
No 89
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=22.57 E-value=2.6e+02 Score=26.46 Aligned_cols=48 Identities=29% Similarity=0.470 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhHHHHH-----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 192 IERRLRRKIKNRESAAR-----SRARK-----QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 192 ~err~rR~ikNReSA~r-----SR~RK-----qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+.+|+|+.+.-+.+-+| ||..+ +.|..+|+.++..|.+.-++++.++.
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444444333 44443 36788899999999999888888775
No 90
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.38 E-value=4.2e+02 Score=21.44 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~ 235 (240)
|....-+.|..++.++-+.|...+..-++...+.+.++...+.+-..+.
T Consensus 28 pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~ 76 (156)
T PRK05759 28 PIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEII 76 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777776666555554444
No 91
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=22.21 E-value=42 Score=24.43 Aligned_cols=16 Identities=50% Similarity=0.439 Sum_probs=13.4
Q ss_pred CcccchhhHHHhhhcc
Q 026303 125 TLGELTLEDFLVQAGL 140 (240)
Q Consensus 125 tlgemTLEDFLvrAGv 140 (240)
.|=.||.|||+.|++.
T Consensus 37 ~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 37 ELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHhCCHHHHHHHcCC
Confidence 4566999999999875
No 92
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=21.99 E-value=3.8e+02 Score=20.72 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 193 err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q 237 (240)
-+|+.+.|.+=|++-..|.-+..-..+|+.++..|.....+|-.+
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~e 54 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQE 54 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 345555555555555544444433455555555555444444443
No 93
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.61 E-value=1.1e+02 Score=30.92 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026303 218 NELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q 237 (240)
..|+.+-+.|.+||++|+++
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 76 AKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46666667777777777664
No 94
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.52 E-value=1.2e+02 Score=24.06 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026303 219 ELVSKVSRLEE 229 (240)
Q Consensus 219 eLE~~v~~L~~ 229 (240)
+|+.++.-|+.
T Consensus 89 ~L~~E~diLKK 99 (121)
T PRK09413 89 KKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 95
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.36 E-value=3.9e+02 Score=22.09 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 198 R~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
|....|-.+---|+==|+++..||-+...++.-|..|.+++
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrI 55 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRI 55 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666666666666666666665554
No 96
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.30 E-value=5.2e+02 Score=22.08 Aligned_cols=46 Identities=7% Similarity=0.050 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENL 232 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~ 232 (240)
+....-++|+.++.+.-+.|...+..-.....+.|.++...+.|-.
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~ 100 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQ 100 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666665555555555555554444433
No 97
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.23 E-value=5.6e+02 Score=22.56 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLE 228 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~ 228 (240)
+....-++|+.++.+.-+.|.+.+..=.....+.|.++..-+
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar 118 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQAR 118 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777766655555555555554433
No 98
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=20.98 E-value=4.8e+02 Score=21.56 Aligned_cols=46 Identities=35% Similarity=0.467 Sum_probs=33.6
Q ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 194 RRLRRKIKNRE-SAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 194 rr~rR~ikNRe-SA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+..|+=+|.=| .+..||..=-.+++||..++..|+.--..|+..+.
T Consensus 18 ~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 18 KELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444322 56778888889999999999999988877776554
No 99
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=20.95 E-value=47 Score=24.48 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.5
Q ss_pred CcccchhhHHHhhhcc
Q 026303 125 TLGELTLEDFLVQAGL 140 (240)
Q Consensus 125 tlgemTLEDFLvrAGv 140 (240)
.|=.||.|||+.|++.
T Consensus 39 ~LC~ms~edF~~~~p~ 54 (68)
T cd08757 39 TLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4667999999999875
No 100
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=20.88 E-value=2e+02 Score=17.14 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026303 218 NELVSKVSRLEEENLKLK 235 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~ 235 (240)
.+||.+...|+.|.+.|.
T Consensus 4 k~lEa~~qkLe~e~q~~e 21 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQISE 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 478999999999887763
No 101
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=20.68 E-value=4.9e+02 Score=21.51 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEEN 231 (240)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN 231 (240)
|..+.-++|+.++.++-..|...+..=++...+.+.++...+.+-
T Consensus 32 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14471 32 PILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAER 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777766666666666666665555443
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.25 E-value=4.4e+02 Score=22.26 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.+|-+.....|++.+-.--.-+++.+..|+.++..+..+...|..++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667778888877777788888888887776665555555443
No 103
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=20.24 E-value=48 Score=25.30 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=30.8
Q ss_pred ccccccccCCchHhhhHHHHhccccccCccccccC---CCCCcccchhhHHHhhhc
Q 026303 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQ---REPTLGELTLEDFLVQAG 139 (240)
Q Consensus 87 ~tlp~~ls~KTVDEVW~dI~~~~~~~~~~~~~~~~---rq~tlgemTLEDFLvrAG 139 (240)
+-+|..--.=|.++|+.=|.-......-....... .-..|=.||.|||+.+++
T Consensus 11 ~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 11 LGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred hCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 44555556678889988777554222111111111 112455699999999997
No 104
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.06 E-value=1.2e+02 Score=25.82 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 026303 227 LEEENLKLKKEK 238 (240)
Q Consensus 227 L~~EN~~L~~q~ 238 (240)
|+.+|..|..|+
T Consensus 79 LE~~k~~L~qqv 90 (135)
T KOG4196|consen 79 LEKEKAELQQQV 90 (135)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
Done!