Query 026303
Match_columns 240
No_of_seqs 225 out of 688
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.2E-14 4.1E-19 102.8 6.6 46 194-239 1-46 (55)
2 2wt7_A Proto-oncogene protein 99.2 1.1E-11 3.9E-16 89.3 6.7 47 193-239 1-47 (63)
3 2dgc_A Protein (GCN4); basic d 99.1 6.2E-11 2.1E-15 85.8 6.2 48 192-239 7-54 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.1 8.5E-11 2.9E-15 83.9 6.6 46 194-239 1-46 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 3.1E-10 1.1E-14 81.3 6.6 45 195-239 2-46 (62)
6 1ci6_A Transcription factor AT 98.7 2.1E-08 7.2E-13 72.3 5.4 46 194-239 2-47 (63)
7 3a5t_A Transcription factor MA 98.4 1.1E-07 3.6E-12 75.6 2.2 55 185-239 28-89 (107)
8 1gu4_A CAAT/enhancer binding p 98.4 7.9E-07 2.7E-11 66.9 6.5 47 192-239 14-60 (78)
9 1hjb_A Ccaat/enhancer binding 98.3 8.5E-07 2.9E-11 68.0 6.6 49 191-239 12-60 (87)
10 1gd2_E Transcription factor PA 98.1 5.1E-06 1.7E-10 61.3 6.8 42 196-237 10-51 (70)
11 2wt7_B Transcription factor MA 97.8 8.7E-05 3E-09 57.2 8.5 53 186-238 19-71 (90)
12 1skn_P DNA-binding domain of S 96.2 0.0024 8.3E-08 49.3 2.8 37 186-222 54-90 (92)
13 2oqq_A Transcription factor HY 94.1 0.031 1.1E-06 37.4 2.7 23 215-237 3-25 (42)
14 2c9l_Y EB1, zebra, BZLF1 trans 94.1 0.18 6.1E-06 35.8 6.7 39 198-236 5-43 (63)
15 2oxj_A Hybrid alpha/beta pepti 88.7 0.36 1.2E-05 30.9 3.0 24 216-239 2-25 (34)
16 3s9g_A Protein hexim1; cyclin 88.7 1.8 6.1E-05 33.9 7.5 26 214-239 64-89 (104)
17 3m48_A General control protein 88.6 0.31 1.1E-05 31.0 2.6 24 216-239 1-24 (33)
18 2kz5_A Transcription factor NF 88.5 0.044 1.5E-06 42.2 -1.6 30 186-215 58-87 (91)
19 1kd8_B GABH BLL, GCN4 acid bas 86.9 0.53 1.8E-05 30.5 3.0 24 216-239 2-25 (36)
20 3c3f_A Alpha/beta peptide with 84.5 0.83 2.8E-05 29.2 3.0 24 216-239 2-25 (34)
21 1kd8_A GABH AIV, GCN4 acid bas 83.4 0.66 2.3E-05 30.0 2.2 23 216-238 2-24 (36)
22 3c3g_A Alpha/beta peptide with 82.9 1.1 3.7E-05 28.5 3.0 23 217-239 2-24 (33)
23 2wq1_A General control protein 80.8 1.4 4.9E-05 28.0 3.0 23 217-239 2-24 (33)
24 1dip_A Delta-sleep-inducing pe 80.6 1.8 6E-05 32.3 3.9 23 214-236 21-43 (78)
25 2bni_A General control protein 80.5 1.3 4.6E-05 28.3 2.8 25 215-239 1-25 (34)
26 2hy6_A General control protein 79.2 1.6 5.3E-05 27.9 2.8 24 216-239 2-25 (34)
27 1uo4_A General control protein 78.8 1.6 5.6E-05 27.9 2.8 24 216-239 2-25 (34)
28 1am9_A Srebp-1A, protein (ster 78.4 2.2 7.4E-05 31.4 3.9 49 191-239 12-74 (82)
29 2oqq_A Transcription factor HY 75.0 6 0.0002 26.4 4.8 25 214-238 16-40 (42)
30 1zme_C Proline utilization tra 73.6 4.3 0.00015 27.7 4.2 26 214-239 43-68 (70)
31 1deb_A APC protein, adenomatou 73.2 3.3 0.00011 28.8 3.4 22 218-239 6-27 (54)
32 3he5_A Synzip1; heterodimeric 72.3 4.2 0.00014 27.3 3.6 21 217-237 5-25 (49)
33 1hlo_A Protein (transcription 71.0 3.3 0.00011 30.0 3.2 27 212-238 54-80 (80)
34 1nkp_B MAX protein, MYC proto- 64.8 7 0.00024 28.3 3.9 24 214-237 46-69 (83)
35 2yy0_A C-MYC-binding protein; 64.6 9 0.00031 26.3 4.2 23 217-239 28-50 (53)
36 1p9i_A Cortexillin I/GCN4 hybr 64.5 3.6 0.00012 25.3 1.9 21 219-239 3-23 (31)
37 2r2v_A GCN4 leucine zipper; co 62.7 6.8 0.00023 25.0 3.0 23 216-238 2-24 (34)
38 2wuj_A Septum site-determining 62.6 9.5 0.00033 26.2 4.1 25 215-239 27-51 (57)
39 1nlw_A MAD protein, MAX dimeri 61.7 11 0.00039 27.5 4.6 27 212-238 44-70 (80)
40 3nmd_A CGMP dependent protein 61.4 12 0.00042 27.5 4.6 28 212-239 37-64 (72)
41 2dgc_A Protein (GCN4); basic d 59.2 35 0.0012 23.8 6.6 52 188-239 7-61 (63)
42 2lz1_A Nuclear factor erythroi 53.8 0.36 1.2E-05 37.1 -4.9 27 188-214 60-86 (90)
43 2er8_A Regulatory protein Leu3 50.6 8.7 0.0003 26.4 2.2 23 214-236 48-70 (72)
44 3s9g_A Protein hexim1; cyclin 49.5 17 0.00058 28.4 3.9 18 219-236 41-58 (104)
45 1zxa_A CGMP-dependent protein 48.6 28 0.00095 25.1 4.7 27 213-239 23-49 (67)
46 1nkp_B MAX protein, MYC proto- 48.5 22 0.00074 25.6 4.2 24 216-239 55-78 (83)
47 2p22_D Hypothetical 12.0 kDa p 48.2 4.9 0.00017 30.1 0.6 11 49-59 1-11 (79)
48 1fmh_A General control protein 46.7 26 0.00089 21.7 3.6 21 218-238 4-24 (33)
49 1go4_E MAD1 (mitotic arrest de 44.3 23 0.00078 27.4 3.9 22 217-238 14-35 (100)
50 3q4f_C DNA repair protein XRCC 41.6 22 0.00075 30.4 3.7 24 215-238 161-184 (186)
51 2dfs_A Myosin-5A; myosin-V, in 39.9 74 0.0025 33.3 8.1 25 215-239 1016-1040(1080)
52 2k8f_B Cellular tumor antigen 39.1 9.2 0.00031 24.8 0.8 22 84-105 5-26 (39)
53 3oja_A Leucine-rich immune mol 37.0 92 0.0032 28.4 7.5 31 209-239 429-459 (487)
54 1hjb_A Ccaat/enhancer binding 36.1 1.3E+02 0.0046 22.3 8.1 49 190-238 15-66 (87)
55 1nkp_A C-MYC, MYC proto-oncoge 35.8 52 0.0018 24.2 4.6 28 212-239 49-83 (88)
56 1a93_B MAX protein, coiled coi 35.5 66 0.0023 20.4 4.3 20 219-238 11-30 (34)
57 1t2k_D Cyclic-AMP-dependent tr 34.9 1E+02 0.0036 20.8 7.1 21 218-238 39-59 (61)
58 3he4_B Synzip5; heterodimeric 34.2 51 0.0017 21.7 3.8 21 214-234 9-29 (46)
59 3w03_C DNA repair protein XRCC 33.9 36 0.0012 28.9 3.9 22 217-238 154-175 (184)
60 1gmj_A ATPase inhibitor; coile 32.7 1.6E+02 0.0053 22.1 8.0 39 200-238 34-74 (84)
61 1jnm_A Proto-oncogene C-JUN; B 32.3 1.2E+02 0.0041 20.6 7.9 22 217-238 31-52 (62)
62 1nlw_A MAD protein, MAX dimeri 30.7 62 0.0021 23.5 4.2 23 217-239 56-78 (80)
63 2g48_C Islet amyloid polypepti 29.9 28 0.00097 22.5 1.9 19 130-148 11-29 (37)
64 1gu4_A CAAT/enhancer binding p 29.6 1.6E+02 0.0056 21.4 8.0 50 189-238 14-66 (78)
65 3hnw_A Uncharacterized protein 29.1 2.2E+02 0.0074 22.6 7.6 27 212-238 100-126 (138)
66 2jws_A GA88; evolution, foldin 28.6 17 0.0006 25.5 0.8 10 94-103 35-44 (56)
67 2ve7_C Kinetochore protein NUF 28.4 68 0.0023 27.9 4.8 50 190-239 116-172 (250)
68 3pjs_K KCSA, voltage-gated pot 28.4 1.4E+02 0.0047 23.7 6.4 27 213-239 136-162 (166)
69 2j5u_A MREC protein; bacterial 28.1 64 0.0022 28.0 4.6 25 215-239 36-60 (255)
70 1r4g_A RNA polymerase alpha su 27.5 47 0.0016 22.9 2.8 23 206-228 14-41 (53)
71 1nkp_A C-MYC, MYC proto-oncoge 27.2 71 0.0024 23.5 4.1 19 217-235 68-86 (88)
72 4ati_A MITF, microphthalmia-as 27.1 1.9E+02 0.0064 22.3 6.7 41 190-230 32-89 (118)
73 1gk7_A Vimentin; intermediate 26.8 55 0.0019 21.0 2.9 18 222-239 20-37 (39)
74 1gd2_E Transcription factor PA 25.9 1.8E+02 0.0061 20.8 5.9 24 216-239 37-60 (70)
75 1uii_A Geminin; human, DNA rep 25.7 75 0.0026 23.8 3.9 23 215-237 53-75 (83)
76 1ci6_A Transcription factor AT 24.0 1.8E+02 0.0061 20.0 7.4 23 216-238 38-60 (63)
77 1go4_E MAD1 (mitotic arrest de 23.5 88 0.003 24.1 4.1 24 216-239 20-43 (100)
78 3mq9_A Bone marrow stromal ant 23.4 99 0.0034 28.1 5.1 25 215-239 443-467 (471)
79 3eff_K Voltage-gated potassium 23.2 1.9E+02 0.0066 21.9 6.1 26 214-239 110-135 (139)
80 3mq7_A Bone marrow stromal ant 23.1 1.8E+02 0.0062 23.1 5.9 15 214-228 70-84 (121)
81 3a2a_A Voltage-gated hydrogen 22.7 1.3E+02 0.0043 21.1 4.3 18 219-236 29-46 (58)
82 1x66_A Friend leukemia integra 21.4 92 0.0032 23.5 3.8 57 85-142 16-77 (98)
83 2jn6_A Protein CGL2762, transp 21.3 19 0.00066 25.7 -0.1 16 223-238 67-82 (97)
84 1t6f_A Geminin; coiled-coil, c 21.2 1E+02 0.0034 19.9 3.3 14 222-235 21-34 (37)
85 1hwt_C Protein (heme activator 20.8 56 0.0019 22.5 2.3 23 213-235 56-78 (81)
86 1sv0_A ETS DNA-binding protein 20.1 30 0.001 25.6 0.7 53 87-140 4-60 (85)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=1.2e-14 Score=102.83 Aligned_cols=46 Identities=39% Similarity=0.520 Sum_probs=44.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|+++||++||+||++||.||++|+++||.+|..|+.||..|+.+++
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999875
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.25 E-value=1.1e-11 Score=89.27 Aligned_cols=47 Identities=30% Similarity=0.489 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 193 err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|||++|+.+||+||++||.||++|+.+|+.+|..|+.+|..|+.+++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998874
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.14 E-value=6.2e-11 Score=85.81 Aligned_cols=48 Identities=33% Similarity=0.405 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++..++..+||+||++||.||++|+.+||.+|..|+.+|..|..+++
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556799999999999999999999999999999999998875
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.13 E-value=8.5e-11 Score=83.92 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=43.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
||++|+.+||++|++||.||++|+.+||.+|..|+.+|..|..+++
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998874
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.05 E-value=3.1e-10 Score=81.28 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 195 r~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+.||..+||+||++||.||++|+.+||.+|..|+.+|..|..++.
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999998874
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.69 E-value=2.1e-08 Score=72.29 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=38.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|+.+++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999999998875
No 7
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.37 E-value=1.1e-07 Score=75.60 Aligned_cols=55 Identities=29% Similarity=0.299 Sum_probs=44.5
Q ss_pred cchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Q 026303 185 DNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKV-------SRLEEENLKLKKEKT 239 (240)
Q Consensus 185 ~~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v-------~~L~~EN~~L~~q~e 239 (240)
....+...-|.+||..|||.+|+.||.||.+.+.+||.++ +.|..||..|+++++
T Consensus 28 Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~ 89 (107)
T 3a5t_A 28 LSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTT
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999999655 456677777777654
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.36 E-value=7.9e-07 Score=66.90 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++-+.| ..+|.++|++||.++++...+++.++..|+.||..|+.+++
T Consensus 14 ~~Y~~r-R~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 14 DEYKIR-RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 58999999999999999999999999999999999999875
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.34 E-value=8.5e-07 Score=68.00 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 191 ~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+++-..|..+|.++|++||.++++...+++.++..|+.||..|+.+++
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444558999999999999999999999999999999999999886
No 10
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.15 E-value=5.1e-06 Score=61.34 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=35.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 196 ~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q 237 (240)
.||+..||.|++..|.||++|+.+||.+|..|+.+|..|..+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999887655554443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.81 E-value=8.7e-05 Score=57.25 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=42.8
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
...+...-|..||-+|||..|+-||.||.....+||.++..|..+...|+.++
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778899999999999999999999999998777666666666554
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.22 E-value=0.0024 Score=49.25 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=29.8
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVS 222 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqay~~eLE~ 222 (240)
........|..||..|||.+|+++|+||.+.+++|+.
T Consensus 54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3444567788999999999999999999998888764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.15 E-value=0.031 Score=37.40 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026303 215 AYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q 237 (240)
+|+.+||.++..|+..|.+|..+
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444444433
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.11 E-value=0.18 Score=35.79 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026303 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 198 R~ikNReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~ 236 (240)
...|||.+++++|+|=+..++-...-.+.-.+||.+|+-
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~ 43 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 348999999999999888777666655667789998874
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.69 E-value=0.36 Score=30.90 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+|..||.+|+.|-.+|..|..+++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 578999999999999999988764
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.65 E-value=1.8 Score=33.90 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
-+.+.+|+.+|.+|..||+.|+.+.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998864
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.60 E-value=0.31 Score=31.03 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+|..||.+|+.|-.+|..|..+++
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~ 24 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVA 24 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHH
Confidence 367899999999999999988764
No 18
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=88.52 E-value=0.044 Score=42.23 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=24.1
Q ss_pred chhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 026303 186 NAFEKSIERRLRRKIKNRESAARSRARKQA 215 (240)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKqa 215 (240)
........|..||.-|||.+|+++|+||..
T Consensus 58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344456678889999999999999999854
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.88 E-value=0.53 Score=30.46 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+|..||.+|+.|-.+|..|..+++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHH
Confidence 578899999998888888887764
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.51 E-value=0.83 Score=29.20 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+|..||.+|+.|-.+|..|..+++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 578899999999999998887764
No 21
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.39 E-value=0.66 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026303 216 YHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+|+.||.+|+.|..+|..|..++
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHH
Confidence 45678888888777777777665
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.86 E-value=1.1 Score=28.52 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 217 HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|..||.+|+.|-.+|..|..+++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHH
Confidence 67899999999999988887764
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.76 E-value=1.4 Score=27.96 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 217 HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|..||.+|+.|-.+|..|..+++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHH
Confidence 67899999998888888887764
No 24
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.65 E-value=1.8 Score=32.32 Aligned_cols=23 Identities=48% Similarity=0.481 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026303 214 QAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~ 236 (240)
|+.+.+|+.++.+|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999998875
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.45 E-value=1.3 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++|..||.+|+.|-.+|..|..+++
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~ 25 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELA 25 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHH
Confidence 3578899999999999988887764
No 26
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.18 E-value=1.6 Score=27.94 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+++.||.+|+.|-.+|..|..+++
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~ 25 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 467899999999998888887764
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.81 E-value=1.6 Score=27.88 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+|..||.+|+.|-.+|..|..++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELA 25 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
Confidence 467899999999888888887753
No 28
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=78.44 E-value=2.2 Score=31.36 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 191 SIERRLRRKIKNRESAARSR--------------ARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 191 ~~err~rR~ikNReSA~rSR--------------~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..||+.|-.|+.+-.+=++- ..--.|+..|+.++..|+.+|..|+.+++
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665543321 23458999999999999999999998764
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.98 E-value=6 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.....+||.+|+.|+.||.-|+.-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4456799999999999999998644
No 30
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=73.63 E-value=4.3 Score=27.67 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..|+..|+.++..|+.....|...+.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999988775
No 31
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=73.19 E-value=3.3 Score=28.76 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 026303 218 NELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+.|-.+|+.|+.||..|+++++
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 6788899999999999999875
No 32
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.31 E-value=4.2 Score=27.26 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026303 217 HNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q 237 (240)
+..||.+|+.|+.||+.|+++
T Consensus 5 vaqlenevaslenenetlkkk 25 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh
Confidence 456777777777777776654
No 33
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.01 E-value=3.3 Score=30.04 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+--.|+..|+.++..|+.++..|+++.
T Consensus 54 ~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 54 KATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345899999999999999999999873
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.81 E-value=7 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q 237 (240)
-.|+..|+.++..|+.+...|+++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777775555544444444444
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.65 E-value=9 Score=26.26 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 217 HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
..+|..++..|..++.+|+++++
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888899999999999998875
No 36
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=64.52 E-value=3.6 Score=25.27 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 026303 219 ELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 219 eLE~~v~~L~~EN~~L~~q~e 239 (240)
.|-.-++.|+.||..|+.++|
T Consensus 3 qlnallasleaenkqlkakve 23 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666554
No 37
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=62.66 E-value=6.8 Score=24.98 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026303 216 YHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
++..||.+|+.|-.+|..|..++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHH
Confidence 46788888888888888877765
No 38
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.64 E-value=9.5 Score=26.23 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++++.+...++.|..||..|+.+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777766654
No 39
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=61.68 E-value=11 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+-.+|+..|+.+...|..++..|++++
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888887776666666666554
No 40
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.37 E-value=12 Score=27.46 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.|.+.+.+||.++...+.++.+|+.++.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777899999999999999999988863
No 41
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=59.24 E-value=35 Score=23.85 Aligned_cols=52 Identities=33% Similarity=0.291 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RK---qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++.+.||.|-.+.-|-|-+|-..+= ...+..|+.+...|..+...|+.++.
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555443 35567889999999999999998764
No 42
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=53.82 E-value=0.36 Score=37.06 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHH
Q 026303 188 FEKSIERRLRRKIKNRESAARSRARKQ 214 (240)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKq 214 (240)
..-.--|-.||.-|||.+|+++|+||-
T Consensus 60 ~Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 60 AQLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 334556778889999999999999874
No 43
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=50.61 E-value=8.7 Score=26.37 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026303 214 QAYHNELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~ 236 (240)
..|+.+||.+|..|+.....|..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999887776643
No 44
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.47 E-value=17 Score=28.37 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026303 219 ELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 219 eLE~~v~~L~~EN~~L~~ 236 (240)
+||.+++.|++||.+|+.
T Consensus 41 ~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 45
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.57 E-value=28 Score=25.14 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
|.+.+.+||..+..-..|+.+|+.++.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988899999988763
No 46
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.53 E-value=22 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
....|+.++..|+.+|..|+.++.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999988875
No 47
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=48.22 E-value=4.9 Score=30.09 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=10.3
Q ss_pred CChHHHhhhcC
Q 026303 49 MNLDELLKSVW 59 (240)
Q Consensus 49 MNmDElLknIw 59 (240)
||||++|++|-
T Consensus 1 ~~~e~~Lr~IP 11 (79)
T 2p22_D 1 MNVEELLRRIP 11 (79)
T ss_dssp CHHHHHHHHSC
T ss_pred CCHHHHHhcCc
Confidence 89999999985
No 48
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=46.72 E-value=26 Score=21.69 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026303 218 NELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q~ 238 (240)
..||++|++-+.||-.|..++
T Consensus 4 aqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 456777777777776666543
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.34 E-value=23 Score=27.42 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026303 217 HNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+..|..++..|+.||.+|++++
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 50
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=41.58 E-value=22 Score=30.40 Aligned_cols=24 Identities=25% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
..+.+|+.+..+|.+||++|.++-
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456799999999999999999864
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.92 E-value=74 Score=33.31 Aligned_cols=25 Identities=44% Similarity=0.515 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
...++|+.+|..|++||..|+.+++
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446778888889999988888765
No 52
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=39.11 E-value=9.2 Score=24.79 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.9
Q ss_pred cccccccccccCCchHhhhHHH
Q 026303 84 QASLTLARALSGKTVEQVWNEI 105 (240)
Q Consensus 84 QgS~tlp~~ls~KTVDEVW~dI 105 (240)
|..+++-++||+.|..+.|+-+
T Consensus 5 qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTC
T ss_pred ccccccCCCccHHHHHHHHHhC
Confidence 3446777889999999999955
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.03 E-value=92 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 209 SRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 209 SR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
-|.|.+++++....++.+|++||++|++.++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhh
Confidence 4555667777777778888888888887764
No 54
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.07 E-value=1.3e+02 Score=22.34 Aligned_cols=49 Identities=29% Similarity=0.322 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 190 KSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR~RK---qay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.--+||.|--+.=|-|-...|.|- +..+.+|+.+-..|+.+...|..++
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556554444444443333332 3445666666666666666666554
No 55
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.77 E-value=52 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHhhc
Q 026303 212 RKQAYHNELVSKVS-------RLEEENLKLKKEKT 239 (240)
Q Consensus 212 RKqay~~eLE~~v~-------~L~~EN~~L~~q~e 239 (240)
+-.+|+..|+.+.. .|+.+|..|+.+++
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888887654 46677777777654
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.51 E-value=66 Score=20.40 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026303 219 ELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 219 eLE~~v~~L~~EN~~L~~q~ 238 (240)
.....+..|+.+|..|..|+
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 34455666777777776654
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.92 E-value=1e+02 Score=20.81 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026303 218 NELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~q~ 238 (240)
.+|..+|..|+.|+..|+..+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777654
No 58
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=34.24 E-value=51 Score=21.71 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026303 214 QAYHNELVSKVSRLEEENLKL 234 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L 234 (240)
+.|+++||.+-+.|+.-.+.|
T Consensus 9 knyiqeleernaelknlkehl 29 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHH
Confidence 568888887766665444444
No 59
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.92 E-value=36 Score=28.89 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026303 217 HNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.+|..++.+|+++|++|+++.
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888764
No 60
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.67 E-value=1.6e+02 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 200 IKNRESAARSRARKQ--AYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 200 ikNReSA~rSR~RKq--ay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
++.++..+....|++ .-+..-..++..|+.+..++++.+
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 223333344555555555554443
No 61
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.35 E-value=1.2e+02 Score=20.64 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026303 217 HNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.+|+.+...|..+...|..++
T Consensus 31 v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 31 VKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444443
No 62
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.70 E-value=62 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 026303 217 HNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
...|+.+...|+.+|..|+.+++
T Consensus 56 ~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 56 DRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788899999999988875
No 63
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=29.92 E-value=28 Score=22.48 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=14.1
Q ss_pred hhhHHHhhhcccccccCCC
Q 026303 130 TLEDFLVQAGLFAEASVSP 148 (240)
Q Consensus 130 TLEDFLvrAGvv~e~~~~p 148 (240)
.|.+||.|+|-+-...-.|
T Consensus 11 rla~~LsrSg~~~~~nf~P 29 (37)
T 2g48_C 11 RLANFLVHSSNNFGAILSS 29 (37)
T ss_pred HHHHHHHhhccccccccCC
Confidence 5899999999876554334
No 64
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.63 E-value=1.6e+02 Score=21.39 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 189 EKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RK---qay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
+.--+||.|-=+.=|-|-...|.|- +..+.+|+.+-..|+.+...|..++
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566664444444444444333 3445666666666666666666554
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.07 E-value=2.2e+02 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026303 212 RKQAYHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 212 RKqay~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
..+..+++++.++..|++++..|.+++
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 66
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=28.62 E-value=17 Score=25.48 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=9.0
Q ss_pred cCCchHhhhH
Q 026303 94 SGKTVEQVWN 103 (240)
Q Consensus 94 s~KTVDEVW~ 103 (240)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5899999996
No 67
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.37 E-value=68 Score=27.92 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 190 KSIERRLRRKIK-------NRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 190 ~~~err~rR~ik-------NReSA~rSR~RKqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+++.+|.+|.++ =|++.----.......+++..++.+|..||.+++.+++
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie 172 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLE 172 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555532 34443333344445556677788888888888887765
No 68
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=28.36 E-value=1.4e+02 Score=23.68 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 213 KQAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++....++.++..|..+..+|+++++
T Consensus 136 ~~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 136 EKAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666677777777777777654
No 69
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.11 E-value=64 Score=27.95 Aligned_cols=25 Identities=32% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
+.+.....++..|+.||.+|++.+.
T Consensus 36 ~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 36 EELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555667788889999987653
No 70
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=27.53 E-value=47 Score=22.86 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHH
Q 026303 206 AARSRARKQAYHNELV-----SKVSRLE 228 (240)
Q Consensus 206 A~rSR~RKqay~~eLE-----~~v~~L~ 228 (240)
...||.-||+|+.+|- .+|..|.
T Consensus 14 S~LS~~~K~sYi~~L~~CktdqEV~~~M 41 (53)
T 1r4g_A 14 SPLSRAEKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp SCCCSHHHHHHHHHHHTCCSSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccchHHHHHHH
Confidence 3457889999999997 3565543
No 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.22 E-value=71 Score=23.48 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026303 217 HNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~ 235 (240)
++.|..+...|..+...|+
T Consensus 68 ~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666553
No 72
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=27.12 E-value=1.9e+02 Score=22.30 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 026303 190 KSIERRLRRKIKNRESAARSR-----------------ARKQAYHNELVSKVSRLEEE 230 (240)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR-----------------~RKqay~~eLE~~v~~L~~E 230 (240)
...||+.|-.|+++-.+=++= .+--.|+..|..++..|+++
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777788877664431 12347899998877766544
No 73
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=26.77 E-value=55 Score=21.00 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 026303 222 SKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 222 ~~v~~L~~EN~~L~~q~e 239 (240)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468889999999998875
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.93 E-value=1.8e+02 Score=20.79 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.+.+|+.....|..||..|+.+++
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777776666553
No 75
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.72 E-value=75 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026303 215 AYHNELVSKVSRLEEENLKLKKE 237 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q 237 (240)
..++.|+.++..|+.+|.+|+.-
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888888887753
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.01 E-value=1.8e+02 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026303 216 YHNELVSKVSRLEEENLKLKKEK 238 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~ 238 (240)
...+|+.++..|+.|+..|+.-+
T Consensus 38 ~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 38 KNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888887644
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.46 E-value=88 Score=24.08 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 216 YHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
.++.|+.+...|++++..|.-++|
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777788887777776664
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.36 E-value=99 Score=28.08 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 215 AYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++++|||.+|..|..+.+.++.|++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766666654
No 79
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=23.23 E-value=1.9e+02 Score=21.90 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026303 214 QAYHNELVSKVSRLEEENLKLKKEKT 239 (240)
Q Consensus 214 qay~~eLE~~v~~L~~EN~~L~~q~e 239 (240)
++....++.++..|..+..+|.++++
T Consensus 110 ~~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 110 KAAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666676777777777776654
No 80
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.12 E-value=1.8e+02 Score=23.14 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026303 214 QAYHNELVSKVSRLE 228 (240)
Q Consensus 214 qay~~eLE~~v~~L~ 228 (240)
++.+++|+.++..|.
T Consensus 70 q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 70 QKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344666665554443
No 81
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.70 E-value=1.3e+02 Score=21.13 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026303 219 ELVSKVSRLEEENLKLKK 236 (240)
Q Consensus 219 eLE~~v~~L~~EN~~L~~ 236 (240)
.||..-..-+.||.+|.+
T Consensus 29 ~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 29 HLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334333344445555443
No 82
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.44 E-value=92 Score=23.45 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=33.2
Q ss_pred ccccccccccCCchHhhhHHHHhccccccCccccccCCC-C----CcccchhhHHHhhhcccc
Q 026303 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQRE-P----TLGELTLEDFLVQAGLFA 142 (240)
Q Consensus 85 gS~tlp~~ls~KTVDEVW~dI~~~~~~~~~~~~~~~~rq-~----tlgemTLEDFLvrAGvv~ 142 (240)
.-+-+|..-..=|.+.|+.=|.-......-.... ..+- . .|=.||.|||+.+++.+.
T Consensus 16 ~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~-~~~F~~m~G~~LC~ls~edF~~~~~~~~ 77 (98)
T 1x66_A 16 RRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEID-TSFFQNMDGKELCKMNKEDFLRATTLYN 77 (98)
T ss_dssp SCCCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCC-GGGGTTCCHHHHHHCCHHHHHTTSCHHH
T ss_pred eecCCCCChhhcCHHHHHHHHHHHHHhcCCCCCC-hhhCCCCCHHHHHcCCHHHHHHHcCCCc
Confidence 3456677777778889988776433221111111 1121 2 344599999999987643
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.31 E-value=19 Score=25.69 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 026303 223 KVSRLEEENLKLKKEK 238 (240)
Q Consensus 223 ~v~~L~~EN~~L~~q~ 238 (240)
++..|+.||..|+.++
T Consensus 67 ei~~L~~e~~~L~~e~ 82 (97)
T 2jn6_A 67 QIRQLKKENALQRART 82 (97)
T ss_dssp HHHHHHHCGGGGGGTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 84
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.24 E-value=1e+02 Score=19.86 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 026303 222 SKVSRLEEENLKLK 235 (240)
Q Consensus 222 ~~v~~L~~EN~~L~ 235 (240)
.+++.|++||.+|.
T Consensus 21 eeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 21 NEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 56788888888886
No 85
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.80 E-value=56 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026303 213 KQAYHNELVSKVSRLEEENLKLK 235 (240)
Q Consensus 213 Kqay~~eLE~~v~~L~~EN~~L~ 235 (240)
+..|+..|+.+|..|+.....|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 55789999999999987665553
No 86
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=20.06 E-value=30 Score=25.61 Aligned_cols=53 Identities=15% Similarity=-0.073 Sum_probs=30.0
Q ss_pred ccccccccCCchHhhhHHHHhccccccCccccccCCC----CCcccchhhHHHhhhcc
Q 026303 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQRE----PTLGELTLEDFLVQAGL 140 (240)
Q Consensus 87 ~tlp~~ls~KTVDEVW~dI~~~~~~~~~~~~~~~~rq----~tlgemTLEDFLvrAGv 140 (240)
+.+|.....=|.+.|+.=|.-......-.... ..+. ..|=.||.|||+.+++.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~-~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLD-FDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCC-GGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCC-hhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 34566666778888887666432211111111 1111 23556999999999873
Done!