Query 026304
Match_columns 240
No_of_seqs 464 out of 2387
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:16:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.9E-37 1.1E-41 251.5 11.7 160 9-181 1-223 (240)
2 COG1120 FepC ABC-type cobalami 100.0 9.6E-36 2.1E-40 253.1 13.1 160 10-182 2-228 (258)
3 COG1127 Ttg2A ABC-type transpo 100.0 1.6E-34 3.6E-39 239.9 11.7 164 8-182 6-234 (263)
4 COG1125 OpuBA ABC-type proline 100.0 1.8E-34 3.8E-39 241.4 9.0 160 10-182 1-224 (309)
5 COG3842 PotA ABC-type spermidi 100.0 3.7E-34 7.9E-39 253.2 9.9 160 8-182 3-225 (352)
6 COG0411 LivG ABC-type branched 100.0 6.3E-34 1.4E-38 237.2 7.7 163 8-182 2-238 (250)
7 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-32 2.4E-37 231.0 13.1 150 9-170 2-206 (248)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-32 4.2E-37 231.9 14.7 161 8-182 2-226 (254)
9 COG0410 LivF ABC-type branched 100.0 6.4E-33 1.4E-37 229.5 10.6 163 9-183 2-226 (237)
10 COG3638 ABC-type phosphate/pho 100.0 5.5E-33 1.2E-37 230.3 9.5 166 9-185 2-239 (258)
11 COG1135 AbcC ABC-type metal io 100.0 8.5E-33 1.9E-37 237.0 10.9 160 10-180 1-228 (339)
12 COG1136 SalX ABC-type antimicr 100.0 1E-32 2.2E-37 230.4 11.1 150 10-171 1-219 (226)
13 COG3839 MalK ABC-type sugar tr 100.0 1.1E-32 2.4E-37 242.6 11.3 161 9-184 2-224 (338)
14 COG4555 NatA ABC-type Na+ tran 100.0 6.5E-33 1.4E-37 224.9 7.2 162 10-186 1-225 (245)
15 PRK13537 nodulation ABC transp 100.0 5.7E-32 1.2E-36 238.2 12.9 161 7-182 4-226 (306)
16 COG1118 CysA ABC-type sulfate/ 100.0 7.2E-32 1.6E-36 231.0 10.2 160 10-181 2-225 (345)
17 PRK13536 nodulation factor exp 100.0 1.9E-31 4E-36 237.9 12.4 162 6-182 37-260 (340)
18 COG1131 CcmA ABC-type multidru 100.0 3.1E-31 6.6E-36 232.1 12.5 161 10-182 4-225 (293)
19 COG2884 FtsE Predicted ATPase 100.0 4.4E-31 9.4E-36 212.4 11.0 154 10-175 1-218 (223)
20 TIGR02314 ABC_MetN D-methionin 100.0 4.3E-31 9.3E-36 235.5 12.1 160 10-180 1-227 (343)
21 PTZ00293 thymidine kinase; Pro 100.0 4.1E-30 8.8E-35 212.9 16.2 174 29-209 2-177 (211)
22 TIGR03265 PhnT2 putative 2-ami 100.0 6.1E-31 1.3E-35 235.7 12.1 158 9-181 3-222 (353)
23 PRK11650 ugpC glycerol-3-phosp 100.0 6.4E-31 1.4E-35 235.8 12.0 157 10-181 3-222 (356)
24 COG1124 DppF ABC-type dipeptid 100.0 7.4E-31 1.6E-35 218.7 11.2 160 9-180 2-228 (252)
25 PRK11432 fbpC ferric transport 100.0 1.1E-30 2.5E-35 233.7 12.1 158 9-181 5-224 (351)
26 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-30 3.6E-35 220.5 11.7 160 11-181 1-224 (235)
27 PRK09452 potA putrescine/sperm 100.0 1.6E-30 3.4E-35 234.5 12.2 160 7-181 11-232 (375)
28 COG4152 ABC-type uncharacteriz 100.0 9.3E-31 2E-35 217.9 8.9 160 10-182 2-218 (300)
29 TIGR01288 nodI ATP-binding ABC 100.0 4.4E-30 9.6E-35 225.9 12.5 158 9-181 3-222 (303)
30 COG1117 PstB ABC-type phosphat 100.0 3E-30 6.6E-35 211.1 10.4 162 8-184 5-239 (253)
31 PRK11607 potG putrescine trans 100.0 4.2E-30 9.1E-35 231.9 11.7 159 8-181 17-237 (377)
32 cd03215 ABC_Carb_Monos_II This 100.0 9.5E-30 2.1E-34 208.1 12.6 149 9-170 3-179 (182)
33 PRK11614 livF leucine/isoleuci 100.0 6.6E-30 1.4E-34 217.1 12.0 161 8-181 3-224 (237)
34 PRK11153 metN DL-methionine tr 100.0 5.3E-30 1.1E-34 229.0 11.9 161 10-181 1-228 (343)
35 COG1137 YhbG ABC-type (unclass 100.0 4E-31 8.7E-36 214.2 3.8 161 9-182 3-227 (243)
36 TIGR00960 3a0501s02 Type II (G 100.0 7.2E-30 1.6E-34 213.9 11.5 149 10-170 1-213 (216)
37 COG1122 CbiO ABC-type cobalt t 100.0 8.5E-30 1.8E-34 215.7 11.9 159 9-180 2-225 (235)
38 PRK09536 btuD corrinoid ABC tr 100.0 4.8E-30 1E-34 232.9 10.9 158 9-180 2-225 (402)
39 PRK10851 sulfate/thiosulfate t 100.0 6.1E-30 1.3E-34 229.2 11.4 157 10-181 2-224 (353)
40 PRK11000 maltose/maltodextrin 100.0 7.3E-30 1.6E-34 230.1 11.9 157 10-181 3-221 (369)
41 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-29 2.4E-34 214.9 12.2 157 11-180 1-219 (232)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-29 2.8E-34 211.9 12.2 150 11-175 1-212 (213)
43 TIGR03258 PhnT 2-aminoethylpho 100.0 9E-30 2E-34 228.6 11.8 157 10-181 5-226 (362)
44 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-29 2.4E-34 213.4 11.6 156 11-179 1-217 (222)
45 COG4559 ABC-type hemin transpo 100.0 6.7E-30 1.5E-34 208.9 9.4 157 10-180 1-227 (259)
46 PRK11831 putative ABC transpor 100.0 1.6E-29 3.5E-34 218.8 12.3 163 8-181 5-231 (269)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 1.8E-29 4E-34 214.0 12.3 158 11-181 1-230 (236)
48 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-29 4E-34 212.0 12.1 155 11-179 1-217 (220)
49 PRK11300 livG leucine/isoleuci 100.0 2.3E-29 5E-34 215.8 12.8 161 8-180 3-240 (255)
50 PRK09493 glnQ glutamine ABC tr 100.0 2E-29 4.4E-34 214.4 12.4 159 10-180 1-222 (240)
51 cd03296 ABC_CysA_sulfate_impor 100.0 2.2E-29 4.7E-34 214.2 12.5 157 10-181 2-224 (239)
52 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-29 4.1E-34 213.2 12.0 159 11-181 1-219 (230)
53 PRK13636 cbiO cobalt transport 100.0 2.1E-29 4.6E-34 219.6 12.3 164 7-181 2-229 (283)
54 cd03301 ABC_MalK_N The N-termi 100.0 2.7E-29 5.9E-34 209.8 12.2 150 11-175 1-212 (213)
55 cd03258 ABC_MetN_methionine_tr 100.0 2.8E-29 6.1E-34 212.6 11.9 160 10-180 1-227 (233)
56 COG3845 ABC-type uncharacteriz 100.0 3.2E-29 6.9E-34 226.0 12.7 153 9-174 3-220 (501)
57 cd03268 ABC_BcrA_bacitracin_re 100.0 3.6E-29 7.8E-34 208.5 12.1 149 11-175 1-207 (208)
58 PRK10895 lipopolysaccharide AB 100.0 2.6E-29 5.7E-34 213.9 11.5 159 10-181 3-224 (241)
59 COG4604 CeuD ABC-type enteroch 100.0 2.2E-30 4.8E-35 209.6 4.5 160 10-182 1-224 (252)
60 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-29 6E-34 213.8 11.3 161 10-181 1-233 (243)
61 COG4175 ProV ABC-type proline/ 100.0 1.1E-29 2.4E-34 218.2 8.6 150 21-181 44-252 (386)
62 cd03229 ABC_Class3 This class 100.0 5.9E-29 1.3E-33 202.7 12.4 149 11-170 1-176 (178)
63 PRK11629 lolD lipoprotein tran 100.0 5.8E-29 1.3E-33 210.8 12.7 158 7-176 2-227 (233)
64 TIGR03522 GldA_ABC_ATP gliding 100.0 3.4E-29 7.4E-34 220.1 11.4 157 10-182 2-220 (301)
65 COG1129 MglA ABC-type sugar tr 100.0 4.3E-29 9.2E-34 228.6 12.5 158 7-177 5-228 (500)
66 cd03256 ABC_PhnC_transporter A 100.0 4.7E-29 1E-33 212.0 11.9 160 11-181 1-232 (241)
67 TIGR02673 FtsE cell division A 100.0 5.2E-29 1.1E-33 208.3 11.9 149 10-170 1-212 (214)
68 PRK11264 putative amino-acid A 100.0 6.7E-29 1.5E-33 212.4 12.8 159 10-180 3-230 (250)
69 cd03230 ABC_DR_subfamily_A Thi 100.0 6E-29 1.3E-33 201.8 11.7 145 11-170 1-170 (173)
70 PRK11247 ssuB aliphatic sulfon 100.0 1.1E-28 2.4E-33 212.3 14.0 159 8-178 10-218 (257)
71 PRK13637 cbiO cobalt transport 100.0 4.3E-29 9.3E-34 218.1 11.5 161 10-181 2-232 (287)
72 PF00265 TK: Thymidine kinase; 100.0 1.1E-28 2.3E-33 200.7 12.8 173 31-208 1-176 (176)
73 cd03266 ABC_NatA_sodium_export 100.0 9.1E-29 2E-33 207.4 12.7 151 10-175 1-217 (218)
74 PRK13638 cbiO cobalt transport 100.0 6.5E-29 1.4E-33 215.2 12.0 160 10-181 1-223 (271)
75 PRK13643 cbiO cobalt transport 100.0 5.8E-29 1.3E-33 217.4 11.7 159 10-181 1-231 (288)
76 cd03216 ABC_Carb_Monos_I This 100.0 1.4E-28 3.1E-33 197.9 13.0 141 11-173 1-161 (163)
77 PRK13647 cbiO cobalt transport 100.0 5.1E-29 1.1E-33 216.3 11.1 159 9-181 3-225 (274)
78 PRK10070 glycine betaine trans 100.0 5.6E-29 1.2E-33 225.8 11.8 150 21-181 44-252 (400)
79 PRK10619 histidine/lysine/argi 100.0 1.1E-28 2.5E-33 212.0 13.0 163 7-181 2-239 (257)
80 TIGR03411 urea_trans_UrtD urea 100.0 9.3E-29 2E-33 210.5 12.1 159 9-181 1-229 (242)
81 PRK11308 dppF dipeptide transp 100.0 8.7E-29 1.9E-33 219.7 12.4 162 8-180 3-241 (327)
82 PRK15079 oligopeptide ABC tran 100.0 8.5E-29 1.8E-33 220.1 11.9 162 8-180 6-248 (331)
83 PRK11248 tauB taurine transpor 100.0 2.4E-28 5.1E-33 210.0 14.3 156 10-177 1-214 (255)
84 PRK10908 cell division protein 100.0 1.5E-28 3.2E-33 206.8 12.7 151 10-172 1-215 (222)
85 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-28 3.1E-33 205.4 12.2 148 11-170 1-210 (213)
86 PRK13635 cbiO cobalt transport 100.0 8.7E-29 1.9E-33 215.3 11.3 161 7-181 2-227 (279)
87 PRK10575 iron-hydroxamate tran 100.0 1.6E-28 3.5E-33 212.0 12.8 164 5-181 6-235 (265)
88 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-28 4.9E-33 205.4 13.3 154 11-175 1-215 (220)
89 PRK11022 dppD dipeptide transp 100.0 1.1E-28 2.4E-33 219.1 11.9 160 10-180 3-240 (326)
90 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.8E-29 2.1E-33 207.2 10.9 148 11-170 1-215 (218)
91 PRK15439 autoinducer 2 ABC tra 100.0 9.8E-29 2.1E-33 231.5 12.1 161 8-181 9-227 (510)
92 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-28 3.1E-33 208.8 12.0 157 10-181 1-219 (236)
93 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-28 4.9E-33 206.1 13.1 154 10-174 1-226 (228)
94 PRK14250 phosphate ABC transpo 100.0 1.1E-28 2.4E-33 210.2 11.3 157 10-180 3-218 (241)
95 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-28 2.4E-33 222.5 11.7 150 21-181 40-252 (382)
96 PRK13634 cbiO cobalt transport 100.0 9.7E-29 2.1E-33 216.2 11.0 160 10-181 2-233 (290)
97 cd03263 ABC_subfamily_A The AB 100.0 1.4E-28 3E-33 206.5 11.5 154 11-180 1-218 (220)
98 PRK13631 cbiO cobalt transport 100.0 1.8E-28 3.9E-33 217.1 12.7 163 6-181 17-263 (320)
99 PRK13548 hmuV hemin importer A 100.0 1.6E-28 3.5E-33 211.3 12.0 160 9-181 1-228 (258)
100 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-28 3.7E-33 210.3 12.1 160 11-181 1-234 (252)
101 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-28 2.5E-33 208.0 10.9 155 11-179 1-225 (227)
102 PRK10253 iron-enterobactin tra 100.0 2.2E-28 4.7E-33 211.3 12.7 161 8-181 5-231 (265)
103 COG3840 ThiQ ABC-type thiamine 100.0 4.2E-29 9.2E-34 199.9 7.6 158 10-182 1-218 (231)
104 PRK14242 phosphate transporter 100.0 2.2E-28 4.8E-33 209.6 12.5 160 7-180 3-234 (253)
105 PRK09984 phosphonate/organopho 100.0 2.4E-28 5.2E-33 210.5 12.8 163 8-181 2-240 (262)
106 PRK14268 phosphate ABC transpo 100.0 2.5E-28 5.5E-33 210.0 12.9 163 5-181 7-240 (258)
107 PRK09700 D-allose transporter 100.0 2E-28 4.3E-33 229.4 13.1 160 8-180 3-231 (510)
108 PRK13651 cobalt transporter AT 100.0 1.8E-28 3.9E-33 215.8 12.0 159 10-181 2-252 (305)
109 COG0444 DppD ABC-type dipeptid 100.0 1.8E-28 4E-33 212.2 11.5 159 11-180 2-240 (316)
110 cd03269 ABC_putative_ATPase Th 100.0 3.3E-28 7.1E-33 203.0 12.7 152 11-174 1-208 (210)
111 TIGR02769 nickel_nikE nickel i 100.0 2.9E-28 6.3E-33 210.5 12.7 161 10-181 2-238 (265)
112 PRK09473 oppD oligopeptide tra 100.0 2.1E-28 4.5E-33 217.6 12.1 163 8-181 10-249 (330)
113 PRK13650 cbiO cobalt transport 100.0 1.5E-28 3.2E-33 213.9 10.9 159 9-181 3-227 (279)
114 PRK13639 cbiO cobalt transport 100.0 1.8E-28 3.9E-33 212.9 11.4 160 10-181 1-224 (275)
115 PRK11144 modC molybdate transp 100.0 1.7E-28 3.7E-33 220.0 11.5 160 10-181 1-216 (352)
116 PRK15093 antimicrobial peptide 100.0 2.5E-28 5.4E-33 217.2 12.4 161 9-180 2-245 (330)
117 COG1435 Tdk Thymidine kinase [ 100.0 3.5E-28 7.7E-33 196.8 12.1 186 29-214 2-195 (201)
118 cd03264 ABC_drug_resistance_li 100.0 2.5E-28 5.4E-33 203.8 11.6 148 11-175 1-210 (211)
119 PRK13652 cbiO cobalt transport 100.0 2.1E-28 4.6E-33 212.6 11.6 160 9-181 2-225 (277)
120 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.8E-28 6.1E-33 202.3 11.8 154 11-177 1-188 (200)
121 KOG3125 Thymidine kinase [Nucl 100.0 5.5E-28 1.2E-32 193.8 12.9 199 28-227 24-224 (234)
122 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.6E-28 5.6E-33 203.7 11.6 149 11-174 1-209 (211)
123 PRK13644 cbiO cobalt transport 100.0 1.9E-28 4.2E-33 212.6 11.1 158 10-181 1-222 (274)
124 PRK10584 putative ABC transpor 100.0 4.2E-28 9E-33 204.8 12.9 153 9-173 5-225 (228)
125 PRK13646 cbiO cobalt transport 100.0 2.1E-28 4.6E-33 213.6 11.4 159 10-180 2-232 (286)
126 cd03292 ABC_FtsE_transporter F 100.0 2.2E-28 4.8E-33 204.3 11.0 148 11-170 1-211 (214)
127 TIGR01186 proV glycine betaine 100.0 1.3E-28 2.8E-33 220.9 10.2 150 21-181 9-217 (363)
128 PRK13549 xylose transporter AT 100.0 2.6E-28 5.7E-33 228.4 12.7 161 8-181 3-230 (506)
129 PRK11231 fecE iron-dicitrate t 100.0 2.7E-28 5.9E-33 209.4 11.8 158 10-181 2-225 (255)
130 PRK10771 thiQ thiamine transpo 100.0 2.4E-28 5.3E-33 206.9 11.2 156 10-180 1-216 (232)
131 TIGR02211 LolD_lipo_ex lipopro 100.0 3.2E-28 7E-33 204.4 11.8 151 10-172 1-219 (221)
132 TIGR01978 sufC FeS assembly AT 100.0 4.1E-28 8.9E-33 206.5 12.4 157 11-180 1-231 (243)
133 PRK11124 artP arginine transpo 100.0 4.7E-28 1E-32 206.3 12.7 160 10-181 2-228 (242)
134 PRK14239 phosphate transporter 100.0 4.8E-28 1E-32 207.3 12.8 159 8-181 3-234 (252)
135 TIGR01188 drrA daunorubicin re 100.0 1.7E-28 3.7E-33 215.7 10.3 147 21-182 9-212 (302)
136 PRK11701 phnK phosphonate C-P 100.0 4.9E-28 1.1E-32 208.2 12.9 163 8-181 4-239 (258)
137 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.8E-28 3.8E-33 212.3 10.1 159 12-181 26-248 (269)
138 PRK10762 D-ribose transporter 100.0 3E-28 6.4E-33 227.8 12.1 159 9-180 3-227 (501)
139 PRK15112 antimicrobial peptide 100.0 5.3E-28 1.1E-32 209.1 12.6 160 9-181 3-237 (267)
140 TIGR00972 3a0107s01c2 phosphat 100.0 5.3E-28 1.1E-32 206.6 12.4 156 10-180 1-229 (247)
141 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.8E-28 8.2E-33 206.9 11.3 158 11-181 1-223 (242)
142 TIGR01277 thiQ thiamine ABC tr 100.0 6.1E-28 1.3E-32 201.9 12.3 151 11-176 1-211 (213)
143 PRK14274 phosphate ABC transpo 100.0 5.6E-28 1.2E-32 207.9 12.2 161 6-181 8-241 (259)
144 PRK14245 phosphate ABC transpo 100.0 5.7E-28 1.2E-32 206.8 12.2 159 9-181 2-232 (250)
145 PRK13641 cbiO cobalt transport 100.0 4.5E-28 9.7E-33 211.7 11.7 159 10-181 2-232 (287)
146 PRK13648 cbiO cobalt transport 100.0 4.4E-28 9.6E-33 209.7 11.5 161 7-181 4-229 (269)
147 TIGR03740 galliderm_ABC gallid 100.0 8.7E-28 1.9E-32 202.3 12.9 156 11-179 1-209 (223)
148 PRK14273 phosphate ABC transpo 100.0 9.3E-28 2E-32 205.9 12.8 158 9-181 6-236 (254)
149 COG4525 TauB ABC-type taurine 100.0 7.4E-28 1.6E-32 194.8 11.4 167 9-194 2-234 (259)
150 PRK14248 phosphate ABC transpo 100.0 1.1E-27 2.3E-32 207.2 13.2 159 8-180 19-249 (268)
151 PRK14267 phosphate ABC transpo 100.0 1.2E-27 2.5E-32 205.1 12.9 159 9-181 3-235 (253)
152 TIGR02142 modC_ABC molybdenum 99.9 7.2E-28 1.6E-32 216.1 11.8 154 15-180 4-218 (354)
153 cd03235 ABC_Metallic_Cations A 99.9 1.2E-27 2.6E-32 200.0 12.3 151 12-175 1-212 (213)
154 cd03226 ABC_cobalt_CbiO_domain 99.9 7.1E-28 1.5E-32 200.3 10.8 147 13-172 2-204 (205)
155 COG4674 Uncharacterized ABC-ty 99.9 2.3E-28 5.1E-33 197.5 7.5 160 9-182 4-234 (249)
156 PRK10744 pstB phosphate transp 99.9 1.2E-27 2.5E-32 206.1 12.3 159 7-180 10-241 (260)
157 cd03300 ABC_PotA_N PotA is an 99.9 1.4E-27 3E-32 202.3 12.2 155 11-180 1-217 (232)
158 cd03246 ABCC_Protease_Secretio 99.9 1.1E-27 2.3E-32 194.5 10.9 144 11-170 1-170 (173)
159 PRK13640 cbiO cobalt transport 99.9 7.9E-28 1.7E-32 209.6 10.9 162 7-181 2-230 (282)
160 PRK10247 putative ABC transpor 99.9 1.5E-27 3.2E-32 201.4 12.0 154 8-176 5-220 (225)
161 PRK14256 phosphate ABC transpo 99.9 1.7E-27 3.7E-32 204.0 12.5 157 10-180 4-233 (252)
162 TIGR03873 F420-0_ABC_ATP propo 99.9 1.2E-27 2.6E-32 205.5 11.6 157 11-181 2-224 (256)
163 PRK14247 phosphate ABC transpo 99.9 1.9E-27 4E-32 203.5 12.4 157 10-180 3-231 (250)
164 TIGR02323 CP_lyasePhnK phospho 99.9 2.3E-27 5.1E-32 203.2 13.0 162 9-181 2-236 (253)
165 COG4586 ABC-type uncharacteriz 99.9 3.6E-28 7.9E-33 205.2 7.7 169 9-188 2-251 (325)
166 PRK13633 cobalt transporter AT 99.9 1.5E-27 3.2E-32 207.7 11.6 159 9-181 3-231 (280)
167 PRK14255 phosphate ABC transpo 99.9 2.9E-27 6.2E-32 202.6 13.2 159 8-180 3-233 (252)
168 PRK13543 cytochrome c biogenes 99.9 2.9E-27 6.3E-32 198.1 12.9 147 7-170 8-212 (214)
169 PRK14259 phosphate ABC transpo 99.9 1.9E-27 4.1E-32 205.9 12.1 149 7-170 10-228 (269)
170 PRK14265 phosphate ABC transpo 99.9 2.3E-27 5E-32 205.9 12.6 160 6-180 16-255 (274)
171 cd03225 ABC_cobalt_CbiO_domain 99.9 1.6E-27 3.4E-32 198.9 11.1 144 13-170 2-209 (211)
172 PRK14272 phosphate ABC transpo 99.9 2.9E-27 6.4E-32 202.4 13.0 159 9-181 3-234 (252)
173 cd03213 ABCG_EPDR ABCG transpo 99.9 3.6E-27 7.8E-32 194.8 12.9 152 10-174 3-192 (194)
174 PRK13632 cbiO cobalt transport 99.9 1.9E-27 4.1E-32 206.0 11.8 160 7-180 4-228 (271)
175 PRK13649 cbiO cobalt transport 99.9 2E-27 4.2E-32 206.8 11.8 159 10-181 2-232 (280)
176 PRK14262 phosphate ABC transpo 99.9 2.8E-27 6.1E-32 202.4 12.4 157 10-181 3-232 (250)
177 PRK14246 phosphate ABC transpo 99.9 2.2E-27 4.7E-32 204.2 11.7 166 1-181 1-239 (257)
178 PRK14261 phosphate ABC transpo 99.9 3E-27 6.5E-32 202.7 12.5 160 8-181 4-235 (253)
179 cd03297 ABC_ModC_molybdenum_tr 99.9 4.1E-27 8.8E-32 197.0 13.0 151 11-175 2-213 (214)
180 TIGR00968 3a0106s01 sulfate AB 99.9 2.1E-27 4.6E-32 201.9 11.4 156 11-181 1-218 (237)
181 PRK14241 phosphate transporter 99.9 2.9E-27 6.2E-32 203.4 12.3 157 10-180 4-239 (258)
182 CHL00131 ycf16 sulfate ABC tra 99.9 6.3E-27 1.4E-31 200.4 14.2 158 9-179 6-237 (252)
183 PRK10261 glutathione transport 99.9 2.1E-27 4.6E-32 227.2 12.6 162 9-181 312-551 (623)
184 PRK14270 phosphate ABC transpo 99.9 3E-27 6.6E-32 202.4 12.2 158 9-180 3-232 (251)
185 PRK14258 phosphate ABC transpo 99.9 3.7E-27 8.1E-32 203.1 12.7 159 9-180 6-242 (261)
186 PRK14237 phosphate transporter 99.9 3.6E-27 7.9E-32 203.9 12.6 160 7-181 17-249 (267)
187 PRK14249 phosphate ABC transpo 99.9 3.9E-27 8.4E-32 201.8 12.7 158 9-181 3-233 (251)
188 cd03232 ABC_PDR_domain2 The pl 99.9 7.3E-27 1.6E-31 192.6 13.7 148 10-170 3-184 (192)
189 PRK13642 cbiO cobalt transport 99.9 2.5E-27 5.4E-32 206.0 11.4 158 10-181 4-227 (277)
190 PRK10419 nikE nickel transport 99.9 4.8E-27 1E-31 203.3 13.1 161 10-181 3-239 (268)
191 PRK14251 phosphate ABC transpo 99.9 4.8E-27 1E-31 201.1 12.9 157 9-180 3-232 (251)
192 PRK14235 phosphate transporter 99.9 3.9E-27 8.4E-32 203.7 12.2 158 8-180 17-248 (267)
193 PRK14275 phosphate ABC transpo 99.9 4.4E-27 9.5E-32 205.3 12.6 161 7-181 36-268 (286)
194 PRK14238 phosphate transporter 99.9 5.6E-27 1.2E-31 203.2 12.8 159 8-181 22-253 (271)
195 cd03247 ABCC_cytochrome_bd The 99.9 3.8E-27 8.2E-32 192.0 10.9 146 11-174 1-176 (178)
196 PRK11288 araG L-arabinose tran 99.9 3.7E-27 8E-32 220.4 12.2 155 9-176 3-222 (501)
197 PRK14243 phosphate transporter 99.9 6.1E-27 1.3E-31 202.2 12.5 159 8-181 8-246 (264)
198 PRK14269 phosphate ABC transpo 99.9 4.3E-27 9.3E-32 201.0 11.3 155 10-180 2-227 (246)
199 PRK13538 cytochrome c biogenes 99.9 6.3E-27 1.4E-31 194.6 12.0 144 10-168 1-202 (204)
200 PRK13645 cbiO cobalt transport 99.9 4.7E-27 1E-31 205.4 11.8 160 9-180 5-237 (289)
201 PRK09544 znuC high-affinity zi 99.9 6.2E-27 1.4E-31 200.8 12.3 155 9-180 3-206 (251)
202 COG1123 ATPase components of v 99.9 4.7E-27 1E-31 216.6 12.2 161 9-180 4-241 (539)
203 PRK14240 phosphate transporter 99.9 6.5E-27 1.4E-31 200.2 12.3 156 10-180 3-231 (250)
204 TIGR03608 L_ocin_972_ABC putat 99.9 5.4E-27 1.2E-31 194.9 11.3 143 13-168 1-206 (206)
205 cd03299 ABC_ModC_like Archeal 99.9 5.7E-27 1.2E-31 199.0 11.6 155 11-180 1-216 (235)
206 cd03233 ABC_PDR_domain1 The pl 99.9 1E-26 2.2E-31 193.3 12.8 154 10-175 3-201 (202)
207 PRK14253 phosphate ABC transpo 99.9 7.9E-27 1.7E-31 199.5 12.3 156 10-180 3-230 (249)
208 cd03267 ABC_NatA_like Similar 99.9 6.7E-27 1.5E-31 198.7 11.5 141 21-175 37-235 (236)
209 COG4181 Predicted ABC-type tra 99.9 4.2E-27 9.2E-32 186.8 9.5 152 10-173 6-225 (228)
210 PRK09580 sufC cysteine desulfu 99.9 1.6E-26 3.5E-31 197.3 13.8 157 10-179 1-231 (248)
211 TIGR02633 xylG D-xylose ABC tr 99.9 6.1E-27 1.3E-31 218.8 12.0 157 10-179 1-226 (500)
212 PRK15134 microcin C ABC transp 99.9 6.2E-27 1.3E-31 220.2 12.1 163 8-181 273-513 (529)
213 PRK13547 hmuV hemin importer A 99.9 8.9E-27 1.9E-31 202.0 12.0 160 10-181 1-242 (272)
214 PRK14271 phosphate ABC transpo 99.9 1.1E-26 2.4E-31 201.8 12.3 159 8-181 19-249 (276)
215 PRK14236 phosphate transporter 99.9 1.2E-26 2.6E-31 201.2 12.5 160 8-181 23-254 (272)
216 PRK03695 vitamin B12-transport 99.9 4.3E-27 9.2E-32 201.4 9.2 156 12-181 2-220 (248)
217 COG1123 ATPase components of v 99.9 1.1E-26 2.3E-31 214.2 12.4 162 7-180 277-516 (539)
218 PRK10261 glutathione transport 99.9 1.6E-26 3.5E-31 221.1 14.1 163 8-181 10-256 (623)
219 TIGR02324 CP_lyasePhnL phospho 99.9 1.1E-26 2.4E-31 195.6 11.5 147 10-169 1-223 (224)
220 PRK10418 nikD nickel transport 99.9 2.6E-26 5.7E-31 197.0 13.9 161 9-181 3-228 (254)
221 PRK14254 phosphate ABC transpo 99.9 2.1E-26 4.5E-31 201.0 13.3 159 7-180 36-266 (285)
222 cd03228 ABCC_MRP_Like The MRP 99.9 1.2E-26 2.5E-31 188.0 10.6 143 11-170 1-169 (171)
223 PRK14257 phosphate ABC transpo 99.9 1.8E-26 3.9E-31 205.0 12.4 159 9-181 79-311 (329)
224 PRK10982 galactose/methyl gala 99.9 8.7E-27 1.9E-31 217.4 10.8 155 13-180 1-220 (491)
225 TIGR03269 met_CoM_red_A2 methy 99.9 1.5E-26 3.2E-31 217.2 12.3 157 11-179 1-254 (520)
226 cd03214 ABC_Iron-Siderophores_ 99.9 9.6E-27 2.1E-31 190.0 9.6 146 12-173 1-177 (180)
227 PRK04296 thymidine kinase; Pro 99.9 1.8E-25 4E-30 184.1 17.2 180 30-211 1-188 (190)
228 PRK10938 putative molybdenum t 99.9 1.1E-26 2.4E-31 216.6 11.1 157 10-180 3-221 (490)
229 PRK15134 microcin C ABC transp 99.9 2.1E-26 4.6E-31 216.6 12.9 162 8-180 3-243 (529)
230 PRK14260 phosphate ABC transpo 99.9 2.7E-26 5.8E-31 197.5 12.4 158 9-181 6-241 (259)
231 TIGR01184 ntrCD nitrate transp 99.9 3.4E-26 7.4E-31 193.7 12.8 146 21-178 1-199 (230)
232 PRK14244 phosphate ABC transpo 99.9 2.2E-26 4.8E-31 197.1 11.2 156 11-181 6-235 (251)
233 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.5E-26 5.3E-31 191.3 11.2 152 9-177 5-206 (207)
234 TIGR02982 heterocyst_DevA ABC 99.9 2.4E-26 5.3E-31 193.1 11.2 148 11-170 2-216 (220)
235 PRK09700 D-allose transporter 99.9 1.4E-26 3E-31 217.0 10.6 157 8-177 263-492 (510)
236 COG2274 SunT ABC-type bacterio 99.9 6.6E-27 1.4E-31 224.4 8.5 157 10-183 471-696 (709)
237 PRK15056 manganese/iron transp 99.9 4.4E-26 9.5E-31 197.6 12.7 162 7-181 3-228 (272)
238 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.3E-26 2.7E-31 201.3 9.3 156 10-182 2-224 (275)
239 cd03231 ABC_CcmA_heme_exporter 99.9 3.1E-26 6.7E-31 190.1 11.2 143 11-168 1-198 (201)
240 cd03234 ABCG_White The White s 99.9 8.7E-26 1.9E-30 190.5 13.7 154 10-175 3-225 (226)
241 PRK13549 xylose transporter AT 99.9 3E-26 6.4E-31 214.6 11.6 162 8-181 257-492 (506)
242 PRK10762 D-ribose transporter 99.9 3.1E-26 6.8E-31 214.2 11.7 160 9-181 256-482 (501)
243 PRK14263 phosphate ABC transpo 99.9 6.8E-26 1.5E-30 195.4 12.7 160 8-181 6-243 (261)
244 PRK13539 cytochrome c biogenes 99.9 5.1E-26 1.1E-30 189.6 11.4 145 10-170 2-200 (207)
245 cd03252 ABCC_Hemolysin The ABC 99.9 1.6E-26 3.5E-31 196.2 8.4 153 11-180 1-222 (237)
246 TIGR01257 rim_protein retinal- 99.9 2.8E-26 6.1E-31 237.9 11.7 164 8-186 1935-2162(2272)
247 cd03251 ABCC_MsbA MsbA is an e 99.9 1.7E-26 3.7E-31 195.5 8.4 153 11-180 1-222 (234)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.4E-26 2.9E-31 196.7 7.7 153 11-180 1-223 (238)
249 TIGR03269 met_CoM_red_A2 methy 99.9 4.8E-26 1E-30 213.8 11.8 161 8-180 277-514 (520)
250 cd03254 ABCC_Glucan_exporter_l 99.9 2.1E-26 4.5E-31 194.5 8.4 153 10-179 2-222 (229)
251 PRK14266 phosphate ABC transpo 99.9 7E-26 1.5E-30 193.8 11.8 157 10-181 3-232 (250)
252 PRK14252 phosphate ABC transpo 99.9 1.3E-25 2.9E-30 193.8 13.5 158 8-180 14-246 (265)
253 PRK15439 autoinducer 2 ABC tra 99.9 4.5E-26 9.7E-31 213.6 11.0 160 8-180 266-489 (510)
254 cd03245 ABCC_bacteriocin_expor 99.9 3.7E-26 8.1E-31 191.8 9.3 147 11-174 3-218 (220)
255 cd03244 ABCC_MRP_domain2 Domai 99.9 5E-26 1.1E-30 191.1 9.7 150 11-177 3-220 (221)
256 cd03253 ABCC_ATM1_transporter 99.9 3E-26 6.5E-31 194.3 8.2 153 11-180 1-221 (236)
257 PRK11288 araG L-arabinose tran 99.9 5.8E-26 1.3E-30 212.3 10.5 161 9-182 256-484 (501)
258 PRK13540 cytochrome c biogenes 99.9 9.4E-26 2E-30 187.0 10.6 134 10-148 1-190 (200)
259 PRK14264 phosphate ABC transpo 99.9 2.1E-25 4.4E-30 196.5 13.0 160 8-181 43-287 (305)
260 COG4598 HisP ABC-type histidin 99.9 2.6E-26 5.6E-31 183.8 6.2 160 9-181 5-239 (256)
261 COG0396 sufC Cysteine desulfur 99.9 4.2E-25 9.1E-30 182.8 13.4 157 9-179 2-230 (251)
262 cd03223 ABCD_peroxisomal_ALDP 99.9 4.2E-25 9.1E-30 178.2 13.2 137 11-170 1-162 (166)
263 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 3.9E-25 8.6E-30 174.4 12.0 130 11-170 1-142 (144)
264 TIGR01189 ccmA heme ABC export 99.9 2.4E-25 5.2E-30 184.2 11.2 133 11-148 1-190 (198)
265 TIGR02633 xylG D-xylose ABC tr 99.9 1.1E-25 2.5E-30 210.3 10.3 156 9-177 256-486 (500)
266 PRK10982 galactose/methyl gala 99.9 1.9E-25 4E-30 208.4 11.2 157 8-177 248-474 (491)
267 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.1E-25 2.4E-30 217.6 10.0 153 10-181 451-671 (686)
268 TIGR01257 rim_protein retinal- 99.9 1.7E-25 3.7E-30 232.1 11.9 163 9-187 927-1153(2272)
269 cd03222 ABC_RNaseL_inhibitor T 99.9 9.2E-25 2E-29 177.9 13.6 132 14-170 4-147 (177)
270 PRK11176 lipid transporter ATP 99.9 1.4E-25 3.1E-30 213.0 9.5 155 10-181 341-565 (582)
271 cd03288 ABCC_SUR2 The SUR doma 99.9 1.5E-25 3.2E-30 192.8 8.6 156 9-181 18-241 (257)
272 TIGR02770 nickel_nikD nickel i 99.9 5.2E-25 1.1E-29 186.3 11.7 149 21-181 2-213 (230)
273 COG1134 TagH ABC-type polysacc 99.9 8.4E-25 1.8E-29 182.7 12.6 142 21-182 43-235 (249)
274 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.3E-25 5E-30 187.9 9.4 139 11-175 23-223 (224)
275 PRK10790 putative multidrug tr 99.9 1.9E-25 4.2E-30 212.6 10.0 155 10-181 340-561 (592)
276 PRK13546 teichoic acids export 99.9 1E-24 2.2E-29 188.4 13.5 140 21-181 40-230 (264)
277 cd03248 ABCC_TAP TAP, the Tran 99.9 2.4E-25 5.2E-30 187.7 9.3 147 7-170 8-223 (226)
278 TIGR03375 type_I_sec_LssB type 99.9 1.3E-25 2.7E-30 217.5 8.6 157 10-183 463-688 (694)
279 PRK11174 cysteine/glutathione 99.9 2E-25 4.3E-30 212.3 9.6 155 10-181 349-570 (588)
280 PRK13409 putative ATPase RIL; 99.9 1E-24 2.2E-29 207.1 13.9 150 8-177 338-536 (590)
281 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.8E-25 3.9E-30 216.9 8.8 154 10-182 477-699 (710)
282 PRK11819 putative ABC transpor 99.9 8.2E-25 1.8E-29 207.0 13.1 152 7-179 3-246 (556)
283 PRK15064 ABC transporter ATP-b 99.9 8.7E-25 1.9E-29 205.7 13.0 149 10-180 1-239 (530)
284 PRK10535 macrolide transporter 99.9 1.4E-24 3E-29 208.6 12.8 160 9-181 3-230 (648)
285 TIGR01193 bacteriocin_ABC ABC- 99.9 3.7E-25 8E-30 214.7 8.7 154 10-181 473-695 (708)
286 PLN03211 ABC transporter G-25; 99.9 7.9E-25 1.7E-29 210.2 10.6 156 13-181 71-294 (659)
287 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.1E-24 6.7E-29 171.3 12.1 137 13-170 2-155 (157)
288 TIGR01842 type_I_sec_PrtD type 99.9 7.4E-25 1.6E-29 206.8 9.8 156 10-181 316-540 (544)
289 COG4148 ModC ABC-type molybdat 99.9 1.2E-24 2.7E-29 184.4 9.9 149 23-182 16-217 (352)
290 TIGR00958 3a01208 Conjugate Tr 99.9 5.2E-25 1.1E-29 213.7 8.5 158 10-182 478-701 (711)
291 PRK13545 tagH teichoic acids e 99.9 2.8E-24 6.1E-29 198.8 13.0 152 8-180 19-229 (549)
292 COG1119 ModF ABC-type molybden 99.9 2.7E-24 5.8E-29 179.7 11.6 157 8-176 29-255 (257)
293 PRK13657 cyclic beta-1,2-gluca 99.9 9.9E-25 2.1E-29 207.6 10.0 155 10-181 334-556 (588)
294 KOG0057 Mitochondrial Fe/S clu 99.9 1.2E-24 2.7E-29 198.3 10.0 157 9-182 350-573 (591)
295 COG4608 AppF ABC-type oligopep 99.9 1.2E-24 2.5E-29 184.9 9.1 160 9-180 3-196 (268)
296 COG1132 MdlB ABC-type multidru 99.9 1.1E-24 2.3E-29 206.6 9.5 157 10-183 328-552 (567)
297 TIGR02203 MsbA_lipidA lipid A 99.9 8.8E-25 1.9E-29 207.1 8.9 155 10-181 330-554 (571)
298 COG4987 CydC ABC-type transpor 99.9 9.9E-25 2.2E-29 198.7 8.6 157 10-183 336-561 (573)
299 COG4172 ABC-type uncharacteriz 99.9 3.4E-24 7.3E-29 189.6 11.5 162 8-180 274-513 (534)
300 PRK15064 ABC transporter ATP-b 99.9 3E-24 6.5E-29 202.1 12.0 151 9-180 318-522 (530)
301 cd03290 ABCC_SUR1_N The SUR do 99.9 2.6E-24 5.6E-29 180.5 10.1 145 12-170 2-216 (218)
302 TIGR01846 type_I_sec_HlyB type 99.9 1.3E-24 2.9E-29 210.4 9.5 155 10-181 455-678 (694)
303 COG4988 CydD ABC-type transpor 99.9 2.4E-24 5.1E-29 198.3 10.6 157 10-183 320-543 (559)
304 PRK11160 cysteine/glutathione 99.9 1.5E-24 3.3E-29 205.9 9.5 156 9-181 337-560 (574)
305 KOG0058 Peptide exporter, ABC 99.9 1.4E-24 3.1E-29 203.5 9.0 156 10-182 465-690 (716)
306 cd03250 ABCC_MRP_domain1 Domai 99.9 3.7E-24 8.1E-29 177.8 10.5 138 11-170 1-202 (204)
307 COG4161 ArtP ABC-type arginine 99.9 1.7E-24 3.6E-29 170.8 7.8 163 10-185 2-232 (242)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.3E-24 1.4E-28 200.8 13.0 149 9-179 3-244 (552)
309 PRK13541 cytochrome c biogenes 99.9 4.5E-24 9.7E-29 176.3 10.4 136 10-148 1-186 (195)
310 PRK10789 putative multidrug tr 99.9 2E-24 4.3E-29 204.9 9.3 155 10-181 313-536 (569)
311 TIGR01192 chvA glucan exporter 99.9 2.6E-24 5.7E-29 204.6 9.7 155 10-181 334-556 (585)
312 PRK10938 putative molybdenum t 99.9 4.6E-24 1E-28 199.0 11.1 154 8-173 258-482 (490)
313 COG1101 PhnK ABC-type uncharac 99.9 2.9E-24 6.3E-29 176.2 8.5 153 10-175 1-230 (263)
314 TIGR01166 cbiO cobalt transpor 99.9 4E-24 8.7E-29 175.7 9.1 125 21-148 8-190 (190)
315 TIGR02204 MsbA_rel ABC transpo 99.9 2.5E-24 5.4E-29 204.3 8.8 154 10-180 337-560 (576)
316 cd03236 ABC_RNaseL_inhibitor_d 99.9 7.9E-24 1.7E-28 181.9 10.8 148 14-176 4-220 (255)
317 KOG0055 Multidrug/pheromone ex 99.9 3.8E-24 8.2E-29 210.5 9.5 157 10-183 350-576 (1228)
318 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.6E-23 3.6E-28 182.4 12.2 150 8-181 37-245 (282)
319 cd03238 ABC_UvrA The excision 99.9 3.3E-23 7.2E-28 168.6 13.0 141 13-170 3-163 (176)
320 COG4107 PhnK ABC-type phosphon 99.9 1.3E-23 2.7E-28 167.6 9.5 162 7-179 3-237 (258)
321 PRK10636 putative ABC transpor 99.9 1.8E-23 3.8E-28 200.6 12.4 152 8-181 310-515 (638)
322 PLN03130 ABC transporter C fam 99.9 6.2E-24 1.3E-28 220.0 9.9 156 10-182 1237-1460(1622)
323 PLN03232 ABC transporter C fam 99.9 6E-24 1.3E-28 219.5 9.5 156 10-182 1234-1457(1495)
324 COG4172 ABC-type uncharacteriz 99.9 2.5E-23 5.3E-28 184.1 11.9 163 7-180 3-244 (534)
325 TIGR02857 CydD thiol reductant 99.9 7.9E-24 1.7E-28 199.1 9.4 142 10-168 320-529 (529)
326 PRK11819 putative ABC transpor 99.9 2.3E-23 5.1E-28 197.1 12.1 141 8-170 322-517 (556)
327 COG4136 ABC-type uncharacteriz 99.9 1.7E-23 3.7E-28 163.1 9.1 144 10-169 2-208 (213)
328 PRK15177 Vi polysaccharide exp 99.9 3.3E-23 7.2E-28 173.6 11.4 141 21-182 3-191 (213)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.1E-23 6.7E-28 196.1 12.3 141 8-170 320-515 (552)
330 COG4619 ABC-type uncharacteriz 99.9 3.2E-24 6.8E-29 170.0 4.5 146 11-170 4-209 (223)
331 TIGR03771 anch_rpt_ABC anchore 99.9 5.3E-23 1.2E-27 173.4 12.2 144 26-181 1-199 (223)
332 PRK10636 putative ABC transpor 99.9 1.7E-23 3.7E-28 200.7 10.1 158 10-178 1-231 (638)
333 TIGR00957 MRP_assoc_pro multi 99.9 1.5E-23 3.3E-28 216.8 10.2 156 10-182 1284-1507(1522)
334 cd03237 ABC_RNaseL_inhibitor_d 99.9 5.6E-23 1.2E-27 175.8 11.9 131 21-170 15-191 (246)
335 PTZ00243 ABC transporter; Prov 99.9 1.6E-23 3.5E-28 216.6 10.1 156 10-182 1308-1532(1560)
336 COG0488 Uup ATPase components 99.9 8.5E-23 1.8E-27 190.6 13.9 152 9-177 2-234 (530)
337 PRK11147 ABC transporter ATPas 99.9 9.4E-23 2E-27 195.7 14.5 155 8-180 317-525 (635)
338 PRK10522 multidrug transporter 99.9 6.1E-23 1.3E-27 193.9 12.3 149 10-173 322-528 (547)
339 TIGR01271 CFTR_protein cystic 99.9 3.6E-23 7.9E-28 213.5 10.3 156 10-182 1217-1439(1490)
340 TIGR00956 3a01205 Pleiotropic 99.9 1.4E-22 3.1E-27 207.8 13.9 158 10-179 759-989 (1394)
341 TIGR00955 3a01204 The Eye Pigm 99.9 9.2E-23 2E-27 195.1 11.5 149 21-181 41-254 (617)
342 TIGR01187 potA spermidine/putr 99.9 6.1E-23 1.3E-27 182.2 8.7 131 36-181 1-188 (325)
343 PLN03073 ABC transporter F fam 99.9 2.8E-22 6E-27 193.9 13.9 150 9-179 507-710 (718)
344 PRK11147 ABC transporter ATPas 99.9 1.5E-22 3.3E-27 194.2 11.2 45 10-55 3-52 (635)
345 PTZ00265 multidrug resistance 99.9 7.8E-23 1.7E-27 210.2 9.6 146 10-170 382-654 (1466)
346 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.3E-22 5E-27 190.3 11.8 149 10-173 337-549 (555)
347 TIGR02868 CydC thiol reductant 99.9 8.3E-23 1.8E-27 192.2 7.9 129 10-145 334-529 (529)
348 PLN03140 ABC transporter G fam 99.9 6.3E-22 1.4E-26 203.1 14.5 157 10-179 867-1106(1470)
349 KOG0061 Transporter, ABC super 99.9 4E-22 8.7E-27 189.9 11.9 149 21-180 46-257 (613)
350 PTZ00265 multidrug resistance 99.9 1.8E-22 3.9E-27 207.6 10.2 157 10-181 1165-1450(1466)
351 PLN03073 ABC transporter F fam 99.9 1.8E-22 3.9E-27 195.2 9.1 48 8-56 175-227 (718)
352 COG4167 SapF ABC-type antimicr 99.9 3.8E-22 8.2E-27 160.3 7.9 159 9-180 3-236 (267)
353 COG4618 ArpD ABC-type protease 99.9 2.9E-22 6.3E-27 181.5 8.0 160 10-185 334-562 (580)
354 PRK13409 putative ATPase RIL; 99.9 3.9E-22 8.5E-27 189.5 9.3 141 15-170 78-286 (590)
355 KOG0059 Lipid exporter ABCA1 a 99.9 3.6E-22 7.9E-27 197.4 8.3 167 9-188 563-792 (885)
356 KOG0055 Multidrug/pheromone ex 99.9 5.4E-22 1.2E-26 195.5 8.7 157 10-183 987-1213(1228)
357 TIGR00954 3a01203 Peroxysomal 99.9 1.7E-21 3.6E-26 187.6 11.0 143 9-170 450-653 (659)
358 TIGR00956 3a01205 Pleiotropic 99.8 1.9E-21 4.2E-26 199.6 10.2 148 21-180 77-297 (1394)
359 KOG0056 Heavy metal exporter H 99.8 1.5E-21 3.2E-26 176.3 8.0 160 10-185 537-763 (790)
360 COG0488 Uup ATPase components 99.8 7.1E-21 1.5E-25 177.7 12.3 146 7-170 318-511 (530)
361 PLN03140 ABC transporter G fam 99.8 3.4E-21 7.4E-26 197.8 10.8 148 21-180 181-424 (1470)
362 COG4138 BtuD ABC-type cobalami 99.8 2E-21 4.4E-26 155.1 6.0 157 10-180 3-218 (248)
363 PLN03232 ABC transporter C fam 99.8 7.6E-21 1.6E-25 196.6 11.0 149 10-181 614-826 (1495)
364 cd03270 ABC_UvrA_I The excisio 99.8 3.5E-20 7.5E-25 156.6 11.3 52 105-168 152-211 (226)
365 PLN03130 ABC transporter C fam 99.8 1.9E-20 4.1E-25 194.3 10.6 149 10-181 614-826 (1622)
366 TIGR00957 MRP_assoc_pro multi 99.8 3.3E-20 7.2E-25 192.1 10.4 150 10-181 636-848 (1522)
367 COG4778 PhnL ABC-type phosphon 99.8 6.4E-20 1.4E-24 145.9 8.4 150 9-170 3-227 (235)
368 COG4133 CcmA ABC-type transpor 99.8 2.8E-20 6E-25 149.9 6.4 134 10-148 2-193 (209)
369 TIGR01271 CFTR_protein cystic 99.8 5.9E-20 1.3E-24 189.9 10.3 147 11-181 429-634 (1490)
370 KOG0054 Multidrug resistance-a 99.8 2.7E-19 5.9E-24 179.7 10.9 156 10-182 1138-1361(1381)
371 cd03271 ABC_UvrA_II The excisi 99.8 2.5E-19 5.5E-24 154.2 8.7 58 109-178 191-261 (261)
372 cd03278 ABC_SMC_barmotin Barmo 99.8 9.3E-19 2E-23 145.0 10.8 134 22-170 14-190 (197)
373 COG4615 PvdE ABC-type sideroph 99.8 8.5E-20 1.9E-24 161.4 3.6 151 10-174 322-528 (546)
374 PTZ00243 ABC transporter; Prov 99.8 7.8E-19 1.7E-23 182.0 10.2 138 21-181 676-868 (1560)
375 COG1129 MglA ABC-type sugar tr 99.8 1.8E-18 3.8E-23 158.9 11.2 155 7-174 260-481 (500)
376 cd03279 ABC_sbcCD SbcCD and ot 99.8 4.3E-18 9.4E-23 142.5 11.3 147 10-170 5-208 (213)
377 COG5265 ATM1 ABC-type transpor 99.8 8.7E-19 1.9E-23 156.0 7.3 157 10-182 262-485 (497)
378 KOG0062 ATPase component of AB 99.8 3.1E-19 6.8E-24 162.0 3.8 158 10-178 80-280 (582)
379 KOG0065 Pleiotropic drug resis 99.8 2E-18 4.3E-23 170.8 8.7 151 21-182 807-1020(1391)
380 cd03240 ABC_Rad50 The catalyti 99.7 7.9E-18 1.7E-22 140.2 11.0 146 11-170 4-197 (204)
381 COG4170 SapD ABC-type antimicr 99.7 3.6E-18 7.8E-23 140.3 8.1 151 9-170 2-234 (330)
382 cd03283 ABC_MutS-like MutS-lik 99.7 2.6E-17 5.6E-22 136.6 11.7 113 21-148 17-151 (199)
383 PF00005 ABC_tran: ABC transpo 99.7 1.1E-18 2.3E-23 135.6 1.9 96 21-119 1-137 (137)
384 KOG0927 Predicted transporter 99.7 8.1E-18 1.8E-22 153.6 7.3 160 6-178 385-591 (614)
385 KOG0927 Predicted transporter 99.7 1.1E-17 2.5E-22 152.7 8.0 161 10-181 75-307 (614)
386 cd03280 ABC_MutS2 MutS2 homolo 99.7 6.6E-17 1.4E-21 134.1 10.5 136 21-176 17-172 (200)
387 cd03274 ABC_SMC4_euk Eukaryoti 99.7 2.5E-17 5.3E-22 138.0 6.6 50 108-170 149-204 (212)
388 KOG0054 Multidrug resistance-a 99.7 7.3E-17 1.6E-21 162.4 10.8 151 8-182 516-730 (1381)
389 cd03243 ABC_MutS_homologs The 99.7 2.8E-16 6E-21 130.5 9.9 137 22-178 20-174 (202)
390 KOG2355 Predicted ABC-type tra 99.6 3.1E-15 6.7E-20 122.6 11.7 156 8-174 11-228 (291)
391 cd03284 ABC_MutS1 MutS1 homolo 99.6 9.5E-16 2.1E-20 128.8 8.9 140 21-180 21-178 (216)
392 PRK00349 uvrA excinuclease ABC 99.6 8.9E-16 1.9E-20 151.7 9.6 65 105-181 845-925 (943)
393 cd03272 ABC_SMC3_euk Eukaryoti 99.6 9.6E-16 2.1E-20 130.4 8.6 50 108-170 180-235 (243)
394 PRK00635 excinuclease ABC subu 99.6 1.7E-15 3.7E-20 156.0 10.8 63 107-181 829-904 (1809)
395 TIGR00630 uvra excinuclease AB 99.6 4.8E-15 1.1E-19 146.3 13.1 61 108-180 849-922 (924)
396 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2E-15 4.4E-20 125.1 8.4 135 21-170 12-190 (198)
397 TIGR02858 spore_III_AA stage I 99.6 6.2E-15 1.3E-19 127.5 10.6 140 32-179 112-265 (270)
398 KOG0066 eIF2-interacting prote 99.6 3.1E-15 6.6E-20 134.3 8.5 149 4-170 580-776 (807)
399 COG3845 ABC-type uncharacteriz 99.6 1.1E-14 2.5E-19 132.1 11.6 163 7-182 254-491 (501)
400 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.5E-14 3.3E-19 120.4 10.9 120 21-148 19-154 (204)
401 cd03227 ABC_Class2 ABC-type Cl 99.6 1.8E-14 3.9E-19 115.6 10.7 132 21-170 11-155 (162)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.6 4.6E-15 9.9E-20 127.0 7.4 51 108-170 177-233 (247)
403 cd03273 ABC_SMC2_euk Eukaryoti 99.6 6.1E-15 1.3E-19 126.4 8.1 50 107-169 187-242 (251)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.2E-14 2.6E-19 122.6 9.4 139 21-177 20-175 (222)
405 cd03239 ABC_SMC_head The struc 99.6 5.4E-14 1.2E-18 114.7 12.8 136 21-170 12-172 (178)
406 COG4178 ABC-type uncharacteriz 99.6 9.9E-15 2.1E-19 136.8 9.1 143 8-170 390-588 (604)
407 KOG0062 ATPase component of AB 99.5 1.3E-13 2.8E-18 125.7 10.3 150 6-173 358-558 (582)
408 COG1245 Predicted ATPase, RNas 99.5 1.5E-13 3.3E-18 123.8 10.6 148 10-170 342-531 (591)
409 cd03277 ABC_SMC5_euk Eukaryoti 99.4 1.6E-12 3.6E-17 108.9 12.1 54 106-169 146-208 (213)
410 KOG0066 eIF2-interacting prote 99.4 5.8E-14 1.3E-18 126.2 3.3 154 10-174 264-489 (807)
411 cd03287 ABC_MSH3_euk MutS3 hom 99.4 6.4E-13 1.4E-17 112.0 9.0 121 21-148 21-157 (222)
412 KOG0060 Long-chain acyl-CoA tr 99.4 2.2E-12 4.8E-17 119.2 13.1 147 8-170 431-641 (659)
413 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.5E-12 3.2E-17 109.2 9.3 116 25-148 21-157 (213)
414 smart00534 MUTSac ATPase domai 99.3 2.5E-12 5.4E-17 105.4 7.8 43 106-148 76-125 (185)
415 COG2401 ABC-type ATPase fused 99.3 3E-12 6.4E-17 114.6 7.1 137 21-169 399-583 (593)
416 cd03286 ABC_MSH6_euk MutS6 hom 99.3 1.9E-11 4.1E-16 102.8 11.2 121 21-148 20-156 (218)
417 COG0178 UvrA Excinuclease ATPa 99.3 1.2E-11 2.5E-16 118.3 9.9 64 107-182 842-918 (935)
418 TIGR01069 mutS2 MutS2 family p 99.3 3.8E-12 8.2E-17 124.4 6.6 131 10-148 295-448 (771)
419 cd03241 ABC_RecN RecN ATPase i 99.3 2.4E-11 5.2E-16 105.7 9.6 50 108-170 192-247 (276)
420 KOG0064 Peroxisomal long-chain 99.2 9.5E-12 2.1E-16 114.1 6.6 129 11-148 482-672 (728)
421 COG1245 Predicted ATPase, RNas 99.2 1.2E-11 2.5E-16 111.9 6.7 55 105-170 228-288 (591)
422 PRK00635 excinuclease ABC subu 99.2 7.5E-11 1.6E-15 122.3 13.1 62 109-182 1721-1795(1809)
423 TIGR02788 VirB11 P-type DNA tr 99.2 5.1E-11 1.1E-15 105.2 8.7 137 24-179 137-277 (308)
424 KOG0065 Pleiotropic drug resis 99.2 8E-11 1.7E-15 117.6 10.1 144 21-180 131-348 (1391)
425 PRK13695 putative NTPase; Prov 99.2 1.3E-10 2.8E-15 94.1 9.3 57 105-173 93-154 (174)
426 PRK08533 flagellar accessory p 99.1 2E-10 4.4E-15 97.3 7.7 143 24-170 17-185 (230)
427 PRK00409 recombination and DNA 99.1 1E-10 2.2E-15 114.7 6.5 179 23-225 318-514 (782)
428 cd01131 PilT Pilus retraction 99.1 7E-10 1.5E-14 91.9 10.2 107 33-148 3-112 (198)
429 COG3910 Predicted ATPase [Gene 99.1 3.7E-10 8E-15 91.6 7.8 42 106-148 144-191 (233)
430 cd00820 PEPCK_HprK Phosphoenol 99.1 3.5E-11 7.5E-16 89.8 1.1 59 21-82 5-65 (107)
431 cd01124 KaiC KaiC is a circadi 99.0 2.8E-09 6.2E-14 86.6 10.4 137 33-171 1-165 (187)
432 cd01120 RecA-like_NTPases RecA 99.0 2.4E-09 5.1E-14 84.2 9.0 136 33-169 1-164 (165)
433 PRK06067 flagellar accessory p 99.0 2.4E-09 5.1E-14 90.8 9.1 142 25-170 19-187 (234)
434 PRK07721 fliI flagellum-specif 99.0 1.3E-09 2.8E-14 100.3 7.3 143 21-179 149-339 (438)
435 cd03242 ABC_RecF RecF is a rec 98.9 3.5E-09 7.7E-14 91.8 8.4 31 21-53 12-42 (270)
436 TIGR00416 sms DNA repair prote 98.9 7.6E-09 1.6E-13 95.9 8.7 137 26-170 89-245 (454)
437 cd01130 VirB11-like_ATPase Typ 98.8 1.4E-08 3.1E-13 83.2 7.6 114 23-146 17-136 (186)
438 TIGR03881 KaiC_arch_4 KaiC dom 98.8 2.5E-08 5.3E-13 84.1 7.7 40 26-65 15-54 (229)
439 PF02463 SMC_N: RecF/RecN/SMC 98.7 1.7E-08 3.6E-13 84.5 6.2 51 106-169 156-212 (220)
440 PRK05399 DNA mismatch repair p 98.7 2.4E-08 5.3E-13 99.0 8.2 120 21-148 598-733 (854)
441 TIGR01420 pilT_fam pilus retra 98.7 6.7E-08 1.4E-12 86.7 9.8 111 29-148 120-233 (343)
442 TIGR03238 dnd_assoc_3 dnd syst 98.7 2.6E-09 5.7E-14 98.2 0.3 29 21-50 22-50 (504)
443 cd01121 Sms Sms (bacterial rad 98.7 4.7E-08 1E-12 88.4 8.1 136 27-170 78-233 (372)
444 PRK09183 transposase/IS protei 98.6 7.2E-08 1.6E-12 83.2 7.0 138 21-176 93-239 (259)
445 PF00488 MutS_V: MutS domain V 98.6 5.1E-08 1.1E-12 83.0 6.0 118 23-148 35-169 (235)
446 cd01122 GP4d_helicase GP4d_hel 98.6 9.9E-08 2.1E-12 82.4 6.7 160 11-170 8-228 (271)
447 TIGR00630 uvra excinuclease AB 98.6 1E-07 2.3E-12 94.8 7.4 65 105-181 502-581 (924)
448 PRK00349 uvrA excinuclease ABC 98.6 1.2E-07 2.5E-12 94.7 7.3 65 105-181 504-583 (943)
449 PRK11823 DNA repair protein Ra 98.5 3.8E-07 8.3E-12 84.5 8.8 141 21-169 69-230 (446)
450 smart00382 AAA ATPases associa 98.5 7.1E-07 1.5E-11 67.4 8.6 26 30-56 1-26 (148)
451 PRK13830 conjugal transfer pro 98.5 1.7E-06 3.8E-11 85.7 12.8 68 106-175 650-725 (818)
452 PF09818 ABC_ATPase: Predicted 98.5 2.4E-06 5.2E-11 77.8 12.3 136 26-173 240-417 (448)
453 PF13555 AAA_29: P-loop contai 98.5 1.5E-07 3.2E-12 63.2 3.3 34 21-55 12-46 (62)
454 TIGR03880 KaiC_arch_3 KaiC dom 98.4 1.3E-06 2.8E-11 73.4 8.5 142 26-170 11-178 (224)
455 KOG0063 RNAse L inhibitor, ABC 98.4 6.4E-07 1.4E-11 81.1 6.4 55 106-170 472-532 (592)
456 PRK13764 ATPase; Provisional 98.4 3.5E-06 7.6E-11 80.3 11.4 136 28-177 254-399 (602)
457 cd01394 radB RadB. The archaea 98.3 1.2E-06 2.7E-11 73.1 7.0 143 27-170 15-186 (218)
458 PRK06793 fliI flagellum-specif 98.3 8.6E-07 1.9E-11 81.4 6.4 45 10-56 130-180 (432)
459 TIGR02655 circ_KaiC circadian 98.3 2.1E-06 4.6E-11 80.4 8.5 143 26-170 16-191 (484)
460 TIGR02524 dot_icm_DotB Dot/Icm 98.3 3.7E-06 8E-11 75.8 9.4 110 29-147 132-249 (358)
461 COG3044 Predicted ATPase of th 98.3 2.7E-06 5.8E-11 76.6 8.1 134 24-170 236-408 (554)
462 PTZ00132 GTP-binding nuclear p 98.3 2.3E-06 4.9E-11 71.3 6.9 23 33-55 11-33 (215)
463 cd00009 AAA The AAA+ (ATPases 98.3 2.9E-06 6.2E-11 64.7 7.0 101 30-146 18-131 (151)
464 PRK00300 gmk guanylate kinase; 98.3 3E-06 6.4E-11 70.1 7.3 26 29-55 3-28 (205)
465 COG2874 FlaH Predicted ATPases 98.3 2.2E-05 4.9E-10 65.2 12.2 142 25-170 22-190 (235)
466 TIGR01070 mutS1 DNA mismatch r 98.3 2E-06 4.4E-11 85.2 7.2 118 23-148 585-718 (840)
467 cd01125 repA Hexameric Replica 98.2 2.7E-05 5.8E-10 66.2 13.1 64 106-170 109-190 (239)
468 PRK07196 fliI flagellum-specif 98.2 5.7E-07 1.2E-11 82.6 2.4 34 21-56 146-179 (434)
469 COG1066 Sms Predicted ATP-depe 98.2 3.7E-06 8E-11 75.8 7.2 113 27-146 89-221 (456)
470 TIGR02237 recomb_radB DNA repa 98.2 5.9E-06 1.3E-10 68.5 7.9 143 27-170 8-178 (209)
471 cd00984 DnaB_C DnaB helicase C 98.2 2.3E-06 5E-11 72.5 5.5 144 27-170 9-207 (242)
472 TIGR01026 fliI_yscN ATPase Fli 98.2 1.8E-06 4E-11 79.6 4.8 33 21-55 154-186 (440)
473 PLN03210 Resistant to P. syrin 98.2 5.3E-06 1.2E-10 85.3 8.4 30 24-54 200-229 (1153)
474 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3.8E-06 8.3E-11 70.8 6.2 26 27-53 15-40 (235)
475 TIGR00235 udk uridine kinase. 98.2 1.2E-06 2.6E-11 72.9 3.0 26 29-55 4-29 (207)
476 PRK10416 signal recognition pa 98.2 9E-06 2E-10 72.2 8.7 36 29-65 112-148 (318)
477 PRK10078 ribose 1,5-bisphospho 98.1 1.5E-06 3.3E-11 71.1 3.1 25 30-55 1-25 (186)
478 PRK14088 dnaA chromosomal repl 98.1 5.7E-06 1.2E-10 76.6 7.3 99 33-148 132-241 (440)
479 PRK06002 fliI flagellum-specif 98.1 3E-06 6.4E-11 78.1 5.3 46 8-55 137-188 (450)
480 PRK09361 radB DNA repair and r 98.1 1.4E-05 3E-10 67.2 9.0 145 26-170 18-190 (225)
481 PRK06995 flhF flagellar biosyn 98.1 8.5E-06 1.8E-10 75.9 8.0 44 21-65 246-292 (484)
482 PF13476 AAA_23: AAA domain; P 98.1 9.9E-07 2.1E-11 71.8 1.6 32 21-54 10-41 (202)
483 cd01129 PulE-GspE PulE/GspE Th 98.1 3E-05 6.6E-10 67.1 10.8 107 29-146 78-185 (264)
484 PRK13891 conjugal transfer pro 98.1 3.9E-05 8.4E-10 76.6 12.9 62 106-169 685-753 (852)
485 PF13401 AAA_22: AAA domain; P 98.1 1.5E-06 3.2E-11 66.3 2.3 113 29-144 2-125 (131)
486 PRK13898 type IV secretion sys 98.1 4.2E-05 9E-10 76.0 12.9 63 106-170 640-709 (800)
487 PRK09825 idnK D-gluconate kina 98.1 1.9E-06 4.1E-11 70.1 2.9 25 30-55 2-26 (176)
488 TIGR00767 rho transcription te 98.1 2.3E-06 5.1E-11 77.6 3.6 45 10-55 130-191 (415)
489 PF13173 AAA_14: AAA domain 98.1 1.3E-05 2.9E-10 61.5 6.8 100 31-148 2-102 (128)
490 PRK08181 transposase; Validate 98.0 1.6E-05 3.5E-10 68.9 7.8 132 28-177 103-242 (269)
491 PRK06893 DNA replication initi 98.0 2.2E-05 4.8E-10 66.4 8.4 87 32-145 40-134 (229)
492 cd01393 recA_like RecA is a b 98.0 1.3E-05 2.8E-10 67.2 6.9 27 26-52 14-40 (226)
493 PF00437 T2SE: Type II/IV secr 98.0 3.5E-05 7.5E-10 66.6 9.6 107 28-146 124-233 (270)
494 PF00004 AAA: ATPase family as 98.0 6.1E-05 1.3E-09 57.1 9.7 21 34-55 1-21 (132)
495 PRK09302 circadian clock prote 98.0 2E-05 4.4E-10 74.2 8.5 155 14-170 11-201 (509)
496 TIGR00618 sbcc exonuclease Sbc 98.0 1.5E-05 3.4E-10 81.1 7.6 52 108-170 978-1035(1042)
497 PRK06526 transposase; Provisio 98.0 2.1E-05 4.5E-10 67.7 7.1 129 29-176 96-233 (254)
498 PF06745 KaiC: KaiC; InterPro 98.0 7E-05 1.5E-09 62.9 10.2 141 27-170 15-185 (226)
499 PRK13873 conjugal transfer ATP 98.0 0.00011 2.3E-09 73.2 12.9 63 106-170 633-702 (811)
500 COG1618 Predicted nucleotide k 97.9 9.5E-05 2.1E-09 58.9 9.7 39 106-145 98-140 (179)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=251.49 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=132.6
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|++|+| |++||++|.+||+++|+||||||||||| |||+++ .++|.++.........|. .
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlL-RclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~-~ 78 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLL-RCLNGLEEPDSGSITVDGEDVGDKKDILKLRR-K 78 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHH-HHHHCCcCCCCceEEECCEeccchhhHHHHHH-h
Confidence 489999999999 9999999999999999999999999999 999998 234544332211112222 3
Q ss_pred CeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccCcEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p~ll 112 (240)
.|+|||..++||.+|+.+|..+.... ++.++.+|+++
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 59999999999999999887653210 12368999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|+||||+ ..++++.++++++ .|.|.++|||++.|+ .+.||||++|++ +++..|+|+.+
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FA----------r~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFA----------REVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHH----------HHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999 3589999999998 799999999999999 999999999999 88889988754
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.6e-36 Score=253.13 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=132.1
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++|+||++++|++++|+||||||||||| |+|+|+ .++|+++..++++...+ ..
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLL-k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk--~i 78 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLL-KCLAGLLKPKSGEVLLDGKDIASLSPKELAK--KL 78 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCCchhhcCHHHHhh--hE
Confidence 78999999999 9999999999999999999999999999 999996 45777777766655444 35
Q ss_pred eEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLD 110 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~ 110 (240)
+|++|.......+++.+...+... ++..++++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 899998655555555543322100 1223699999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce-ee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF-FT 182 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~-~~ 182 (240)
+|+|||||+ +.+++++++++++++|+|||+++||++.+ .++||++++|++ ++.+.|+|++ ++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A----------~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA----------ARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999988 45899999999977899999999999999 999999999999 9999999875 44
No 3
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-34 Score=239.94 Aligned_cols=164 Identities=21% Similarity=0.150 Sum_probs=139.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-cc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT-RY 73 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~-~~ 73 (240)
.+.|++++|+++| ++|+||+|++||+++|+||||||||||| |+|.|+ .++|+++...+..... -.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlL-r~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLL-RLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHH-HHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5689999999999 9999999999999999999999999999 999997 4678877766543321 11
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccC
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKL 109 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p 109 (240)
...|++||.+++|..+++.+|..+..+- ++.++.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 2348999999999999999998763220 12258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|++||||+ ...+.++++++.+.-|.|+++||||++.+ ..+|||+++|.+ ++.++|+++++.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~----------~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL----------LTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH----------HhhhceEEEEeCCEEEEeCCHHHHH
Confidence 9999999998 34788899999887899999999999999 999999999999 999999998654
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=241.39 Aligned_cols=160 Identities=23% Similarity=0.176 Sum_probs=137.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|+||.| ++++||+|++||+++++|||||||||+| |+|+++ .++|+++..++....+| + +
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtL-kMINrLiept~G~I~i~g~~i~~~d~~~LRr-~-I 77 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDPVELRR-K-I 77 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHH-HHHhcccCCCCceEEECCeecccCCHHHHHH-h-h
Confidence 78999999999 9999999999999999999999999999 999997 56888887776554433 3 5
Q ss_pred eEEEccCceecceecCcchhHHHhh-----------------------------------c---------hhhhccCcEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL-----------------------------------G---------DDAYAKLDVI 112 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~-----------------------------------~---------~~l~~~p~ll 112 (240)
||+-|...+||++|+.+|..+...+ + +.++.+|++|
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 8999999999999999887653221 1 1268999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
|+|||++ +.++.+.+.++.++.|+|||+||||++++ ..++|||.+|++ +++..++|+++.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA----------~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA----------LKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH----------HhhhceEEEecCCeEEEeCCHHHHH
Confidence 9999977 56788888888887899999999999999 999999999999 999999987654
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-34 Score=253.19 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=138.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.+.++++|+++.| ++|+||+|++||+++|+|||||||||+| |+|+|+ .++|+++...++..+
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlL-R~IAGfe~p~~G~I~l~G~~i~~lpp~kR---- 77 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL-RMIAGFEQPSSGEILLDGEDITDVPPEKR---- 77 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhhc----
Confidence 4589999999999 9999999999999999999999999999 999998 467888888776432
Q ss_pred CCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccCcE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p~l 111 (240)
..++|||+..+||++|+.+|..|..+. +..++.+|++
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v 157 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV 157 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence 258999999999999999997765431 1125899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
||||||.+ +.++...++++.++.|+|.|+||||-+++ +.++|||.+|++ ++...|+|+++.
T Consensus 158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA----------l~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA----------LAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH----------hhhccceEEccCCceeecCCHHHHh
Confidence 99999977 44677788888877899999999999999 999999999999 999999987654
No 6
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-34 Score=237.17 Aligned_cols=163 Identities=20% Similarity=0.182 Sum_probs=141.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.+++++++|+++| ++||||++++||+++|+|||||||||++ ++|+|+ .+.|+++...++....+.+
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf-NlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF-NLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeee-eeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3579999999999 8999999999999999999999999999 999997 4688899988888777766
Q ss_pred CCeEEEccCceecceecCcchhHHHh----h-------------------------------------------------
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQK----L------------------------------------------------- 101 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----~------------------------------------------------- 101 (240)
. .-.||...+|+.+|+.+|...... +
T Consensus 81 i-~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 81 I-ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred c-eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence 4 567999999999999988765411 0
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
+..++.+|++|+||||.+ ..++.++|+++.++.|.||+++.||++.+ +.+||||++|+. +++
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V----------m~l~dri~Vl~~G~~I 229 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV----------MGLADRIVVLNYGEVI 229 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH----------hhhccEEEeccCCcCc
Confidence 112589999999999977 35799999999986789999999999999 999999999999 999
Q ss_pred ccCCcceee
Q 026304 174 LCGKRAFFT 182 (240)
Q Consensus 174 ~~g~~~~~~ 182 (240)
++|+|++..
T Consensus 230 AeG~P~eV~ 238 (250)
T COG0411 230 AEGTPEEVR 238 (250)
T ss_pred ccCCHHHHh
Confidence 999998643
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=231.02 Aligned_cols=150 Identities=22% Similarity=0.167 Sum_probs=120.6
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.+++++++++.| |+|+||+|.+||+++|+||||||||||| |+|+|+. ..|. +.............++|+||
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLL-riiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLL-RLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCcccCCCCCCEEEEec
Confidence 478999999998 9999999999999999999999999999 9999983 2222 22211111111223589999
Q ss_pred cCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC
Q 026304 82 DGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~ 119 (240)
+..++|..|+.+|..+.... ...++.+|++||||||++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999887654321 112689999999999977
Q ss_pred ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+..+.+.+.++.++.++||++||||++++ ..++|||++|.+
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA----------v~LsdRivvl~~ 206 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEA----------VYLADRVVVLSN 206 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HhhhCEEEEecC
Confidence 45788888888887899999999999999 999999999986
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-32 Score=231.92 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=121.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-h-hCCceEEeeccc--hhcccCCCeE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-S-DNGRNIAMIKSS--KDTRYAIDSV 78 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~-~~g~~i~~~~~~--~~~~~~~~~~ 78 (240)
.++|+++|+++.| |+||||++++|++++|+||||||||||+ |+|.|+ . ..|. +...... .......++|
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLl-K~iLGll~p~~G~-i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLL-KAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCcce-EEEccccccccccCCeEEE
Confidence 3589999999999 8999999999999999999999999999 999996 2 3343 2222111 1111223589
Q ss_pred EEccCc---eecceecCcchhHH--------------------------------H--------------hhchhhhccC
Q 026304 79 VTHDGA---KLPCWALPELTSFR--------------------------------Q--------------KLGDDAYAKL 109 (240)
Q Consensus 79 v~q~~~---~~~~~~~~~~~~~~--------------------------------~--------------~~~~~l~~~p 109 (240)
|||... -|| .|+++...+. . .+++.++++|
T Consensus 80 VPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 80 VPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 998542 222 2333221110 0 0123479999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~ 182 (240)
++|+||||+. +..++++|++++++ |+||+++|||++.+ ..+||+|+.|+.++.+.|++++..
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v----------~~~~D~vi~Ln~~~~~~G~~~~~~ 226 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV----------MAYFDRVICLNRHLIASGPPEEVL 226 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh----------HhhCCEEEEEcCeeEeccChhhcc
Confidence 9999999977 56899999999985 99999999999999 999999999999888889887643
No 9
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-33 Score=229.49 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=143.9
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++||+..| |++|||++++||+++|+||||||||||| ++|+|+ .++|+++...++....+.+.
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlL-kti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLL-KTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 589999999999 9999999999999999999999999999 999997 46899999999888888774
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
+||||...+|+.+|+++|+.+.... +..++.+|++|+
T Consensus 81 -~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 81 -AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred -EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999887653110 122699999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTL 183 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~ 183 (240)
||||+. ..++.+.+++++++.|.||++|.++..++ .++|||.++|.+ ++++.|+.+++..
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A----------l~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA----------LEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH----------HHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999977 46899999999975688999999999999 999999999999 9999999876543
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-33 Score=230.28 Aligned_cols=166 Identities=20% Similarity=0.166 Sum_probs=137.4
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-cc
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT-RY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~-~~ 73 (240)
.||+++||++.| |++|||+|++||+++|+||||||||||| |+|+|+ .++|.++...+.+... .+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLL-R~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLL-RSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHH-HHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 489999999999 9999999999999999999999999999 999997 3466666655544322 22
Q ss_pred CCCeEEEccCceecceecCcchhHHHh---------------------------h-----------------------ch
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK---------------------------L-----------------------GD 103 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~---------------------------~-----------------------~~ 103 (240)
...|++||.+.+.+.+++.+|...... + +.
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 346999999999998888766543210 0 12
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++++|++||.|||++ ...+++.|++++++.|.|||+..|+++.+ .+|||||+-|++ +++++|
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA----------~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA----------KKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH----------HHHHhhheEecCCcEEEeC
Confidence 2699999999999977 35899999999988999999999999999 999999999999 999999
Q ss_pred Ccceeeeee
Q 026304 177 KRAFFTLRK 185 (240)
Q Consensus 177 ~~~~~~~~~ 185 (240)
++.+++...
T Consensus 231 ~~~el~~~~ 239 (258)
T COG3638 231 PASELTDEA 239 (258)
T ss_pred ChhhhhHHH
Confidence 987766433
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-33 Score=237.02 Aligned_cols=160 Identities=19% Similarity=0.123 Sum_probs=137.7
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD- 70 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~- 70 (240)
||+++++||.| ++||||+|++||++||+|.||||||||+ |+++++ .++|+++..++....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLi-R~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 68999999887 7899999999999999999999999999 999998 467888877765432
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhcc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAK 108 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~ 108 (240)
..++.+|++||+..++...|+.+|..+...+ ++.++.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 2223469999999999999999988776432 1226999
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++||.||||+ ...++++|+++.++.|.||+++||.|+.+ .++|||+.+|++ +++..|+...
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vv----------k~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV----------KRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHH----------HHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999 34799999999988999999999999999 999999999999 9999987643
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=1e-32 Score=230.40 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=125.5
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-- 70 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-- 70 (240)
|++++||++.| |+++||+|++||+++|+||||||||||| ++|.|+ .++|+++..++....
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL-niig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 47889999988 8899999999999999999999999999 999997 456777766654332
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYA 107 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~ 107 (240)
.|....||+||...+++.+|+.+|+.+...+ ++.++.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 2344469999999999999999988753211 122689
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
+|++||.||||. ..++++++++++++.|+||||||||+..+ .+|||++.|++ +
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-----------~~~dr~i~l~dG~ 219 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-----------KYADRVIELKDGK 219 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-----------HhCCEEEEEeCCe
Confidence 999999999988 35899999999886799999999999887 79999999988 6
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.98 E-value=1.1e-32 Score=242.64 Aligned_cols=161 Identities=22% Similarity=0.178 Sum_probs=138.9
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.+|+++||++.| ++++||+|+.||+++|+||||||||||| |+|+|+ .++|+++..++|..+ .
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlL-r~IAGLe~~~~G~I~i~g~~vt~l~P~~R----~ 76 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLL-RMIAGLEEPTSGEILIDGRDVTDLPPEKR----G 76 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhHC----C
Confidence 379999999999 7899999999999999999999999999 999998 467888887766432 2
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
.++|||...+||.+|+.+|..+..+. +..++.+|+++|
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 58999999999999999998876543 122589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLR 184 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~ 184 (240)
||||.+ +..+...|+++.++.|.|+|.+|||..++ ..++|||.+|++ ++...|+|.++..+
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA----------mtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA----------MTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH----------HhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999977 44677888888877899999999999999 999999999998 99999998765433
No 14
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.98 E-value=6.5e-33 Score=224.89 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=132.8
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
||++.+++++| ++||||+++.|++++|+|||||||||+| |+|+++. ++|.+....+.. .|. .
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~L-RmiatlL~P~~G~v~idg~d~~~~p~~--vrr-~ 76 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLL-RMIATLLIPDSGKVTIDGVDTVRDPSF--VRR-K 76 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHH-HHHHHhccCCCceEEEeecccccChHH--Hhh-h
Confidence 78999999999 8999999999999999999999999999 9999973 233333322221 222 3
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
+|+++....++..+|+.+|+.+...+ +..++++|++++
T Consensus 77 IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred cceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 58888777888899999988776543 122599999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeeeec
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLRKT 186 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~~~ 186 (240)
||||++ ...+.+.++++++ .|++||++||+++++ .++||++++|++ .+++.|+++.+..+..
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~Ev----------ealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQEV----------EALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHHHH----------HHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999988 4578899999987 799999999999999 999999999999 9999999876655543
No 15
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=5.7e-32 Score=238.20 Aligned_cols=161 Identities=20% Similarity=0.128 Sum_probs=130.6
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
..++++++||+++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...+ ...+
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl-~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~- 79 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTL-RMLLGLTHPDAGSISLCGEPVPSRA--RHAR- 79 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEecccch--HHHH-
Confidence 45689999999999 8999999999999999999999999999 9999972 3344332211 1112
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l 111 (240)
...+|++|+..+++.+++.+++.+...+ ...++++|++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l 159 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence 2358999999888888888776543211 1115899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
|+|||||+ +..++++|+++++ .|+|||++||+++++ ..+||||++|++ ++.+.|+++.+.
T Consensus 160 llLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~----------~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999988 4579999999976 699999999999999 999999999999 999999887654
No 16
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.2e-32 Score=230.97 Aligned_cols=160 Identities=25% Similarity=0.218 Sum_probs=132.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
||.++++++.| ++|||++|+.||+++++||||||||||| |+|+|+ .++|+.+..... ...+.+.+
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlL-RiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLL-RIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKV 79 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHH-HHHhCcCCCCCceEEECCEeccchhc-cchhhcce
Confidence 68999999988 8899999999999999999999999999 999998 345552222211 12233346
Q ss_pred eEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccCcEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p~ll 112 (240)
|+|||+..+|+.+|+.+|..|..+. +..++.+|++|
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL 159 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL 159 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE
Confidence 9999999999999999988775421 11258899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||.. +.++...|+++.++.|.|.++||||.+++ .++||||++|++ ++...|+|+++
T Consensus 160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea----------~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA----------LELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH----------HhhcceEEEecCCeeeeeCCHHHH
Confidence 9999966 45788899999887799999999999999 999999999999 99999988754
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=1.9e-31 Score=237.85 Aligned_cols=162 Identities=19% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304 6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR 72 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~ 72 (240)
+..++|+++||+++| ++|+||+|++|++++|+||||||||||+ ++|+|+. ++|.++.... ...+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl-~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~ 113 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA-RMILGMTSPDAGKITVLGVPVPARA--RLAR 113 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCceEEEECCEECCcch--HHHh
Confidence 445689999999999 9999999999999999999999999999 9999972 3444432211 1112
Q ss_pred cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD 110 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ 110 (240)
...+|++|+..+++.+++.+++.+...+ +..++.+|+
T Consensus 114 -~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 114 -ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred -ccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2358999998888888887766532110 111589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+||||||++ +.+++++|+++++ .|.|||++||+++++ ..+||+|++|++ ++..+|+++.+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~----------~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999988 5689999999987 699999999999999 999999999999 999999987653
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.1e-31 Score=232.08 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=129.7
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeec--cc---hhcccCCCe
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIK--SS---KDTRYAIDS 77 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~--~~---~~~~~~~~~ 77 (240)
+++++|+++.| |++|||+|++|++++++||||||||||+ |+|+|+.. .+-.+.... .. ...+ ...+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTll-k~l~gl~~p~~G~i~i~G~~~~~~~~~~~-~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLL-KILAGLLKPTSGEILVLGYDVVKEPAKVR-RRIG 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEEcCEeCccCHHHHH-hheE
Confidence 57889999998 8999999999999999999999999999 99999832 222222221 11 1112 2359
Q ss_pred EEEccCceecceecCcchhHHHhhc------------------------------------------hhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~p~lllLD 115 (240)
|++|.+.+++.+|+.+++.+...+. ..++.+|++||||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999998877754321 1158999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
|||+ +.+++++|++++++.+.||+++||.++++ ..+||||++|++ +++++|+++.+.
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~----------~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA----------EELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH----------HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9998 56899999999984348999999999999 999999999999 999999876643
No 19
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.97 E-value=4.4e-31 Score=212.44 Aligned_cols=154 Identities=22% Similarity=0.155 Sum_probs=129.5
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-cccC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-TRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-~~~~ 74 (240)
||+++||++.| |+||||+|++||++.|+||||||||||| |+|.+. .++|.++..++.... .-++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTll-kLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLL-KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHH-HHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 68999999999 9999999999999999999999999999 999885 467777776654331 1122
Q ss_pred CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll 112 (240)
.+|+|||+..+.+..|+++|..+...+ +..++++|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 359999999999999999998875432 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
|.||||. ..++++++.++.. .|+||+|+|||.+.+ ..+--|++.|.+ ++...
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv----------~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELV----------NRMRHRVLALEDGRLVRD 218 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHH----------HhccCcEEEEeCCEEEec
Confidence 9999987 3489999999987 899999999999999 888899999998 77643
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=4.3e-31 Score=235.53 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=129.4
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-c
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-T 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-~ 71 (240)
||+++|++++| ++|+||+|++||+++|+||||||||||+ |+|+|+ .++|+++...++... .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLl-r~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 68999999887 7899999999999999999999999999 999997 345665544432211 1
Q ss_pred ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKL 109 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p 109 (240)
..+..+|+||+..+++..++.++..+.... +..++.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 123469999999988888888776543210 11258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++||+||||+ ...++++|++++++.|.|||++|||++.+ .++||++++|++ ++...|+++.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v----------~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV----------KRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999988 45799999999875699999999999999 999999999999 8888887654
No 21
>PTZ00293 thymidine kinase; Provisional
Probab=99.97 E-value=4.1e-30 Score=212.93 Aligned_cols=174 Identities=44% Similarity=0.747 Sum_probs=155.3
Q ss_pred cCcEEEEEEcCCCCcHHH-HHHHHHcCchhCCceEEeeccchhccc-CCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304 29 NSGEIHVIMGPMFAGKTT-ALLRRIRSESDNGRNIAMIKSSKDTRY-AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY 106 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKST-LLl~~i~gl~~~g~~i~~~~~~~~~~~-~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (240)
..|.+..+.||+|||||| || +.+..+...|+++..+++..+.|+ ....++++++...++..+.+...+...+
T Consensus 2 ~~G~i~vi~GpMfSGKTteLL-r~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~----- 75 (211)
T PTZ00293 2 YRGTISVIIGPMFSGKTTELM-RLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA----- 75 (211)
T ss_pred CceEEEEEECCCCChHHHHHH-HHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc-----
Confidence 469999999999999999 66 999988899999999998888887 4345788888777877776666554432
Q ss_pred ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304 107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT 186 (240)
Q Consensus 107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~ 186 (240)
.++++|++||.+|+.++.+++..+++ .|++||++++|.++.+++|+.+.+|+.+||+|..|+..|..||.++.++.|+.
T Consensus 76 ~~~dvI~IDEaQFf~~i~~~~~~l~~-~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG~~A~~t~R~~ 154 (211)
T PTZ00293 76 KNYDVIAIDEGQFFPDLVEFSEAAAN-LGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIV 154 (211)
T ss_pred cCCCEEEEEchHhhHhHHHHHHHHHH-CCCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhCCcceeEEEEc
Confidence 57899999999998888999888886 79999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCcceEEeecchhhc
Q 026304 187 EETETEIIGGADVYMPVCRQHYV 209 (240)
Q Consensus 187 ~~~~~~~~g~~~~y~~~c~~~~~ 209 (240)
.+++++.+|+.+.|.++||+||.
T Consensus 155 ~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 155 QSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred CCCCEEEECCcccEEehhhhhhh
Confidence 98899999999999999999995
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=6.1e-31 Score=235.65 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=131.2
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
++|+++|++++| ++++||++++|++++|+||||||||||| ++|+|+ .++|+++...++. + +.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~---~-r~ 77 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLL-RIIAGLERQTAGTIYQGGRDITRLPPQ---K-RD 77 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCHH---H-CC
Confidence 479999999998 8999999999999999999999999999 999998 3455555433221 2 23
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
.+|+||+..+|+.+++.+|+.+.... +..++.+|++||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL 157 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL 157 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 58999999999999999887654211 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +.++.+.|+++.++.|.|+|++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea----------~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA----------LSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999987 45788899988775699999999999999 999999999999 99999987653
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=235.77 Aligned_cols=157 Identities=19% Similarity=0.123 Sum_probs=130.0
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
+|+++|++++| ++++||++++|++++|+||||||||||| ++|+|+ .++|+++...++. + +.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~---~-r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-RMVAGLERITSGEIWIGGRVVNELEPA---D-RD 77 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHH---H-CC
Confidence 69999999998 7899999999999999999999999999 999997 3455555433321 1 23
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
.+|+||+..+|+.+++.+|+.+.... +..++.+|++||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 58999999999999998877653210 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +..+.+.|+++.++.|.|+|++|||++++ ..+||++++|++ ++...|+++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA----------MTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEECCHHHH
Confidence 999988 45788889988775699999999999999 999999999999 99888987654
No 24
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.4e-31 Score=218.71 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=124.5
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT 71 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~ 71 (240)
.|++++|+++.| +++|||++.+||.++|+|+||||||||+ |+|.|+ .++|+++....+.. .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLA-RLLAGLEKPSSGSILLDGKPLAPKKRAK-A 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHH-HHHhcccCCCCceEEECCcccCccccch-h
Confidence 489999999998 8999999999999999999999999999 999998 34554443322221 3
Q ss_pred ccCCCeEEEccCc--eecceecCcchh-----------------HHHh------------------------hchhhhcc
Q 026304 72 RYAIDSVVTHDGA--KLPCWALPELTS-----------------FRQK------------------------LGDDAYAK 108 (240)
Q Consensus 72 ~~~~~~~v~q~~~--~~~~~~~~~~~~-----------------~~~~------------------------~~~~l~~~ 108 (240)
+++...+|||++. +-|..++.+.+. +... +...+..+
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 3445689999864 445555542211 1111 01236889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++||+|||++ +.+++++|.++.++.+.|+|++|||+..+ ..+||||++|++ .++..++.+.
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v----------~~~cdRi~Vm~~G~ivE~~~~~~ 228 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----------EHMCDRIAVMDNGQIVEIGPTEE 228 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHH----------HHHhhheeeeeCCeEEEeechhh
Confidence 99999999988 56899999999988999999999999999 999999999999 8887776544
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=233.65 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=130.9
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.+|+++|++++| ++++||++++||+++|+||||||||||| ++|+|+ .++|+++...++ .+ +.
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~---~~-r~ 79 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVL-RLVAGLEKPTEGQIFIDGEDVTHRSI---QQ-RD 79 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCH---HH-CC
Confidence 489999999998 8999999999999999999999999999 999997 345555443222 12 23
Q ss_pred CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll 113 (240)
.+|+||+..+|+.+++.+|..+.... +..++.+|++||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 58999999999999998887653210 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +.++.+.|+++.++.|+|+|++|||.+++ ..+||||++|++ ++...|+++++
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~----------~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA----------FAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999988 45788889888775699999999999999 999999999999 99999988654
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-30 Score=220.46 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=121.8
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccCCC
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYAID 76 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~~~ 76 (240)
|+++|+++.| ++|+||++++|++++|+||||||||||+ ++|+|+. ++|.++...++.. .......
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4788999988 8999999999999999999999999999 9999972 2343332221110 1112235
Q ss_pred eEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCcEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~lll 113 (240)
+|++|+..+++.+++.++..+... + +..++.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 899998887777777665433110 0 112588999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +..+++.|++++++.|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA----------FAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhcCEEEEEECCeEEEecCHHHH
Confidence 999988 45788999998764589999999999999 899999999998 88877776543
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.6e-30 Score=234.46 Aligned_cols=160 Identities=20% Similarity=0.174 Sum_probs=131.3
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
..++|+++|++++| ++++||++++||+++|+||||||||||| ++|+|+ .++|+++...++. +
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~---~- 85 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVL-RLIAGFETPDSGRIMLDGQDITHVPAE---N- 85 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHH---H-
Confidence 34589999999998 8899999999999999999999999999 999997 3455554433221 2
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l 111 (240)
+..+|+||+..+|+.+++.+|+.+.... +..++.+|++
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l 165 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV 165 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2358999999999999998887653210 1125899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||||++ +..+.+.|+++.++.|.|+|++|||.+++ ..+||+|++|++ ++...|++.++
T Consensus 166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea----------~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA----------LTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999987 45788999998875699999999999999 999999999999 99988887643
No 28
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=9.3e-31 Score=217.86 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=129.1
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCceEEeeccc-hhcccCCCeEEEc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRNIAMIKSS-KDTRYAIDSVVTH 81 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~i~~~~~~-~~~~~~~~~~v~q 81 (240)
++++++|+++| ++|+||++++|++.+++|||||||||.+ |+|.|+. . .|. +...... ....+..+||+|.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtf-RmILglle~~~G~-I~~~g~~~~~~~~~rIGyLPE 79 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTF-RMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYLPE 79 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchH-HHHhccCCccCce-EEEcCcchhhhhhhhcccChh
Confidence 68999999999 9999999999999999999999999999 9999972 1 222 2221111 1112224699999
Q ss_pred cCceecceecCcchhHHHhhchh------------------------------------------hhccCcEEEEcCccC
Q 026304 82 DGAKLPCWALPELTSFRQKLGDD------------------------------------------AYAKLDVIGIDEAQF 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------l~~~p~lllLDEP~~ 119 (240)
...+++.+++.+.+.+.+.+.+. ++++|++++||||++
T Consensus 80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS 159 (300)
T COG4152 80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS 159 (300)
T ss_pred hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999999999887776554211 489999999999987
Q ss_pred ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
.+.+.+.+.++++ .|.|||++||.|+.+ .++||++++|+. +.+..|+.....
T Consensus 160 GLDPVN~elLk~~I~~lk~-~GatIifSsH~Me~v----------EeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 160 GLDPVNVELLKDAIFELKE-EGATIIFSSHRMEHV----------EELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred CCChhhHHHHHHHHHHHHh-cCCEEEEecchHHHH----------HHHhhhhheecCCceEEeccHHHHH
Confidence 3467788889987 799999999999999 999999999999 888888875443
No 29
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=4.4e-30 Score=225.91 Aligned_cols=158 Identities=17% Similarity=0.074 Sum_probs=124.9
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
.+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++... .... ...
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIA-RMLLGMISPDRGKITVLGEPVPSR--ARLA-RVA 78 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccc--HHHH-hhc
Confidence 479999999998 8999999999999999999999999999 9999972 233332211 1111 223
Q ss_pred CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll 113 (240)
.+|++|+..+++.+++.++..+... + +..++.+|++||
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5899999887777777666542110 0 111589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||+ +..++++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVLESGRKIAEGRPHAL 222 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999988 4578999999876 699999999999999 899999999999 88888887654
No 30
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-30 Score=211.09 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=129.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------------hhCCceEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------------SDNGRNIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------------~~~g~~i~~~~~~~ 69 (240)
.+.++++||++.| |++||++|+++++++++||||||||||| |+++++ .++|+++.......
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~L-R~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLL-RCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHH-HHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4579999999999 9999999999999999999999999999 999886 34666665432221
Q ss_pred -hcccCCCeEEEccCceecceecCcchhHHHhh----------------------------------------------c
Q 026304 70 -DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------G 102 (240)
Q Consensus 70 -~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~ 102 (240)
..|. ..|+|||.+.-|| +++++|..+..++ +
T Consensus 84 ~~lRr-~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 84 VELRR-RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHH-HheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 1222 3599999999999 7888877664332 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
+.++.+|++||||||++ ...+-+++.++++ .-||++|||+|..+ .+++|+..++.. +++..
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQA----------aRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQA----------ARVSDYTAFFYLGELVEF 229 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHH----------HHHhHhhhhhcccEEEEE
Confidence 12588999999999998 2368888889875 68999999999999 999999999999 88888
Q ss_pred CCcce-eeee
Q 026304 176 GKRAF-FTLR 184 (240)
Q Consensus 176 g~~~~-~~~~ 184 (240)
|+.+. |+..
T Consensus 230 g~T~~iF~~P 239 (253)
T COG1117 230 GPTDKIFTNP 239 (253)
T ss_pred cCHHhhhcCc
Confidence 87664 4443
No 31
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-30 Score=231.90 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=129.8
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++|+++|++++| ++++||++++|++++|+||||||||||| ++|+|+ .++|+++...++ .+ +
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~---~~-r 91 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLL-RMLAGFEQPTAGQIMLDGVDLSHVPP---YQ-R 91 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCH---HH-C
Confidence 3479999999998 8899999999999999999999999999 999998 234554433222 12 2
Q ss_pred CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll 112 (240)
..+|+||+..+|+.+++.+|+.+.... +..++.+|++|
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 358999999999999999887653210 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||++ +..+.+.|+++.++.|.|+|++|||.+++ ..+|||+++|++ ++...|+++++
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA----------MTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999988 44677788888765689999999999999 999999999999 99988987643
No 32
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=9.5e-30 Score=208.08 Aligned_cols=149 Identities=18% Similarity=0.135 Sum_probs=118.5
Q ss_pred ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++... .....+|+
T Consensus 3 ~~l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~~i~~~ 80 (182)
T cd03215 3 PVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELA-EALFGLRPPASGEITLDGKPVTRRSPRDA-IRAGIAYV 80 (182)
T ss_pred cEEEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccCHHHH-HhCCeEEe
Confidence 489999999999 9999999999999999999999999999 9999972 34444332221111 12235899
Q ss_pred EccC---ceecceecCcchhHHHh----------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEE
Q 026304 80 THDG---AKLPCWALPELTSFRQK----------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVV 140 (240)
Q Consensus 80 ~q~~---~~~~~~~~~~~~~~~~~----------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~ 140 (240)
+|+. .+++..++.++..+... ++..++.+|++|+||||++ +..+.+.++++.+ .+.|+|+
T Consensus 81 ~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii 159 (182)
T cd03215 81 PEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLL 159 (182)
T ss_pred cCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 9984 46777788887765321 2445789999999999988 4578899998876 5899999
Q ss_pred EecChhhhhcccchHHHHHhhccceeeecc
Q 026304 141 AGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 141 vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+||+++++ ..+||++++|++
T Consensus 160 ~sh~~~~~----------~~~~d~v~~l~~ 179 (182)
T cd03215 160 ISSELDEL----------LGLCDRILVMYE 179 (182)
T ss_pred EeCCHHHH----------HHhCCEEEEecC
Confidence 99999999 899999999976
No 33
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.6e-30 Score=217.07 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=123.0
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.+||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|+++...+... ....
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~ 80 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSGRIVFDGKDITDWQTAK-IMRE 80 (237)
T ss_pred ccEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEecCCCCHHH-HHHh
Confidence 3589999999998 8999999999999999999999999999 9999972 2333332221111 1122
Q ss_pred CCeEEEccCceecceecCcchhHHH-----------------hh------------------------chhhhccCcEEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-----------------KL------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-----------------~~------------------------~~~l~~~p~lll 113 (240)
..+|++|+..+++..++.++..+.. .+ +..++.+|++|+
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3588999877776666654432210 00 112588999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ ...+.+.|+++++ +|.|||++|||++++ ..+|||+++|++ ++...|+++.+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQA----------LKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH----------HhhCCEEEEEeCCEEEeeCCHHHH
Confidence 999987 4578899998876 689999999999999 899999999999 88888877654
No 34
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.3e-30 Score=228.98 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=125.5
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-c
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-T 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~ 71 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...+.... .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLI-RCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 68999999876 6899999999999999999999999999 9999972 34444433222111 1
Q ss_pred ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKL 109 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p 109 (240)
.....+|++|+..+++.+++.++..+.... ...++.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 122358999998888877777665442110 11258899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|||||||+ +..++++|+++.++.|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i----------~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV----------KRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999988 45789999998764589999999999999 899999999999 88888876543
No 35
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4e-31 Score=214.24 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=140.7
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.+|.++|+.|+| +++|||++++||+++++|||||||||.+ .++.|+ .+++.+++.+|...+.|.+.
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F-ymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF-YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE-EEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 468999999999 8999999999999999999999999999 999997 56888999988888888874
Q ss_pred CeEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccCcE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p~l 111 (240)
+|++|+...|..+|+.+|......+ +..++.+|++
T Consensus 82 -gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 82 -GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred -ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 8999999999999998876432110 1226899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+|||||++ ..++.++++.+++ .|..|+++-|+..+. ..+|||.+++.+ ++.+.|+|+++.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVREt----------L~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVRET----------LDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHHHH----------HhhhheEEEEecCeEEecCCHHHHh
Confidence 99999977 4588899999987 799999999999999 999999999999 999999998643
No 36
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=7.2e-30 Score=213.86 Aligned_cols=149 Identities=19% Similarity=0.153 Sum_probs=114.6
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hccc
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~ 73 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++.. ....
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFL-KLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 58899999887 7899999999999999999999999999 9999972 2343332221111 0111
Q ss_pred CCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~l 111 (240)
...+|++|+..+++.+++.++..+... + ...++.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 235899999888877777766543210 0 1125899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
||||||++ +..+.++|+++++ .|.|||++|||++++ ..+||++++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~----------~~~~d~i~~l~~ 213 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLV----------ETYRHRTLTLSR 213 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 99999988 4578899998876 589999999999999 889999999976
No 37
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.5e-30 Score=215.67 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=121.0
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.|++++++++.| ++++||++++|+.++|+||||||||||+ ++++|+. ++|.++... .......+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~-~~l~GLl~p~~G~v~~~g~~~~~~-~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLL-KLLNGLLKPTSGEVLVDGLDTSSE-KSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCcCcCCCCEEEECCeeccch-hhHHHhhc
Confidence 478999999998 8899999999999999999999999999 9999982 233332210 11111223
Q ss_pred CCeEEEccC--ceecceecCcchhHHH------------h------------------------------hchhhhccCc
Q 026304 75 IDSVVTHDG--AKLPCWALPELTSFRQ------------K------------------------------LGDDAYAKLD 110 (240)
Q Consensus 75 ~~~~v~q~~--~~~~~~~~~~~~~~~~------------~------------------------------~~~~l~~~p~ 110 (240)
..|+|||++ +++.. ++.+...|.. + +++.++.+|+
T Consensus 80 ~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 80 KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred ceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 459999986 33332 3332222210 0 1233699999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|+|||||+ +.+++++++++.++.|+|||++|||++++ ..+|||+++|++ ++..+|+|..
T Consensus 159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~----------~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV----------LEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH----------HhhCCEEEEEECCEEeecCCHHH
Confidence 999999999 45899999999985589999999999999 999999999999 9989998754
No 38
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=4.8e-30 Score=232.87 Aligned_cols=158 Identities=21% Similarity=0.174 Sum_probs=125.1
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|++++| ++++||++++||+++|+||||||||||| |+|+|+ .++|+++...+.... .+.
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLL-k~LaGll~p~sG~I~l~G~~i~~~~~~~~--~~~ 78 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLL-RAINGTLTPTAGTVLVAGDDVEALSARAA--SRR 78 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEEcCcCCHHHH--hcc
Confidence 479999999999 9999999999999999999999999999 999997 234444433222111 223
Q ss_pred CeEEEccCceecceecCcchhHHH----------------h------------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ----------------K------------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------~------------------------------~~~~l~~~p 109 (240)
.++++|+..++..+++.++..+.. . +...++++|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 589999887766666655442210 0 011258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++||||||++ +.+++++|+++++ +|+|||++|||++++ .++|||+++|++ ++...|++++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~----------~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLA----------ARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence 9999999988 4579999999986 689999999999999 999999999999 9989998875
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=6.1e-30 Score=229.17 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=127.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||+|++||+++|+||||||||||| ++|+|+ .++|+++...++ +.+..
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~----~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLL-RIIAGLEHQTSGHIRFHGTDVSRLHA----RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCH----HHCCE
Confidence 58999999998 8999999999999999999999999999 999997 234554432211 11235
Q ss_pred eEEEccCceecceecCcchhHHHhh----------------------------------------------chhhhccCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------GDDAYAKLD 110 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~l~~~p~ 110 (240)
+|++|+..+++.+++.+|..+.... +..++.+|+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988887766542110 112589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +.++.+.|+++.++.|.|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea----------~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA----------MEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999987 45788999998875689999999999999 999999999999 99888887653
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-30 Score=230.06 Aligned_cols=157 Identities=24% Similarity=0.211 Sum_probs=126.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||+|++|++++|+||||||||||| ++|+|+. ++|+++...++ .+ ...
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL-~~iaGl~~p~~G~I~~~g~~i~~~~~---~~-~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLEDITSGDLFIGEKRMNDVPP---AE-RGV 77 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCH---hH-CCE
Confidence 68999999998 8999999999999999999999999999 9999972 33444322211 11 235
Q ss_pred eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL 114 (240)
+|++|+..+++.+++.++..+.... +..++.+|++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999999999888888776542110 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +..+.+.|+++.++.|.|+|++|||++++ ..+||++++|++ ++...|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~----------~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA----------MTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 99988 45788889988764589999999999999 999999999999 88888877543
No 41
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=1.1e-29 Score=214.87 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=120.2
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++.+|++++|+||||||||||+ ++|+|+. ++|+++...+.....+ ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTF-YMIVGLVKPDSGKILLDGQDITKLPMHKRAR-LGIG 78 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccCCHhHHHh-ccEE
Confidence 4788999988 8999999999999999999999999999 9999972 2333332221111111 2358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++.+++.++..+... + ...++.+|++|+||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99998888777777665543210 0 11158899999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||++ +..+.++|+++.+ .+.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRET----------LSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEEeCHHH
Confidence 9988 4578899998876 689999999999999 899999999998 8776666543
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-29 Score=211.87 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=114.7
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+. .....+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGRDVTGVPP----ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcCcCch----hhccEE
Confidence 4688999988 8999999999999999999999999999 9999972 23333321111 112358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++..++.++..+... + ...++.+|++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998777766666655432110 0 11258899999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
||++ +..++++|++++++.|.|||++|||++++ ..+||++++|++ ++...
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA----------LALADRIAVMNEGRIVQV 212 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhcCEEEEEECCEEEec
Confidence 9988 45788999998764589999999999999 899999999998 66543
No 43
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=9e-30 Score=228.63 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=127.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C--C------ceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N--G------RNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~--g------~~i~~~~~~~~~~~~ 74 (240)
.|+++|++++| ++++||+|++|++++|+||||||||||| ++|+|+.. . | +++...++ +.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~~~G~i~~~g~~~~~~~~----~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLL-RAIAGFVKAAGLTGRIAIADRDLTHAPP----HKR 79 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCEEEEECCEECCCCCH----HHC
Confidence 58999999998 8999999999999999999999999999 99999732 2 3 22211111 112
Q ss_pred CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll 112 (240)
..+|+||+..+++.+++.+|+.+.... +..++.+|++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 358999999999999999887653211 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcC-CCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHD-GKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~-g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||++ +.++.+.|+++.++. |+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea----------~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA----------LTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999987 457889999888744 89999999999999 999999999999 99999987654
No 44
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=1.1e-29 Score=213.37 Aligned_cols=156 Identities=22% Similarity=0.258 Sum_probs=118.9
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++....+ ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSIRFDGRDITGLPPHERAR-AGIG 78 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCCCCHHHHHh-cCeE
Confidence 4788999988 8999999999999999999999999999 9999972 2333332221111112 2358
Q ss_pred EEEccCceecceecCcchhHHHh-----------------h------------------------chhhhccCcEEEEcC
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-----------------L------------------------GDDAYAKLDVIGIDE 116 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-----------------~------------------------~~~l~~~p~lllLDE 116 (240)
|++|+..+++.+++.++..+... + ...++.+|++|+|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99998877777666654432110 0 112588999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
|++ +..++++|+++++ .+.|||++|||++++ ..+||++++|++ ++...|+++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFA----------LEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhccEEEEeeCCeEEEeCCHH
Confidence 988 4578999999876 689999999999999 899999999998 777666654
No 45
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.7e-30 Score=208.87 Aligned_cols=157 Identities=18% Similarity=0.186 Sum_probs=122.1
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+.+|+|++. ++++||++.+||+.+|+||||||||||| |.++|. .++|.+...+++....+. .
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlL-k~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~--r 77 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLL-KALSGELSPDSGEVTLNGVPLNSWPPEELARH--R 77 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHH-HHhhCccCCCCCeEeeCCcChhhCCHHHHHHH--h
Confidence 68999999987 9999999999999999999999999999 999996 345666666655544443 3
Q ss_pred eEEEccCceecceecCcchhHHH-----------------h------------------hchh---------------hh
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ-----------------K------------------LGDD---------------AY 106 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~-----------------~------------------~~~~---------------l~ 106 (240)
++++|...+-..+++.+...+.. . -+|+ ..
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 67787665433344443222210 0 0111 14
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.++++|+|||||+ +..++.+.+++++ .|..|+++-||++.+ ..|||||++|++ ++++||+|.
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~-~g~~V~~VLHDLNLA----------A~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR-EGGAVLAVLHDLNLA----------AQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHh-cCCcEEEEEccchHH----------HHhhheeeeeeCCeEeecCCHH
Confidence 5667999999998 4578899999998 689999999999999 999999999999 999999987
Q ss_pred e
Q 026304 180 F 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 227 ~ 227 (259)
T COG4559 227 D 227 (259)
T ss_pred H
Confidence 4
No 46
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=1.6e-29 Score=218.80 Aligned_cols=163 Identities=23% Similarity=0.194 Sum_probs=124.5
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-ccc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-TRY 73 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~~~ 73 (240)
.++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...+.... ...
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLL-RLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 3589999999998 8999999999999999999999999999 9999972 23333322211110 111
Q ss_pred CCCeEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCc
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLD 110 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~ 110 (240)
...+|++|+..+++.+++.++..+... + ...++.+|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 235899998877777676665432100 0 112588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +..+.++|+++.++.|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV----------LSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999988 45788999998764589999999999999 899999999998 88888876643
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=1.8e-29 Score=214.00 Aligned_cols=158 Identities=22% Similarity=0.172 Sum_probs=119.7
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++....+ ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIAR-LGIG 78 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEECCCCCHHHHHh-cCEE
Confidence 4688999988 8999999999999999999999999999 9999972 2233322211111111 2358
Q ss_pred EEEccCceecceecCcchhHHH----------------------h-------h-----------------------chhh
Q 026304 78 VVTHDGAKLPCWALPELTSFRQ----------------------K-------L-----------------------GDDA 105 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~----------------------~-------~-----------------------~~~l 105 (240)
|++|+..+++.+++.++..+.. . + ...+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 9999887777767665543210 0 0 1115
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|+||||++ +..++++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVV----------MSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEeecCH
Confidence 88999999999988 4578899999886 689999999999999 899999999998 88777776
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+.+
T Consensus 228 ~~~ 230 (236)
T cd03219 228 DEV 230 (236)
T ss_pred HHh
Confidence 543
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-29 Score=212.02 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=118.2
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+. ++|.++... + ...+ ...+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~-~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTI-KMLTTLLKPTSGRATVAGHDVVRE-P-REVR-RRIG 76 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecCcC-h-HHHh-hcEE
Confidence 4789999988 8999999999999999999999999999 9999972 223322110 1 1112 2358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++.+++.++..+... + ...++.+|++|+||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998877777676655433110 0 11258999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
||++ ...+.++|+++.++.|.|||++|||++++ ..+||++++|++ ++...++++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA----------EQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEeCChH
Confidence 9988 45788889988764489999999999999 899999999998 887766654
No 49
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=215.85 Aligned_cols=161 Identities=14% Similarity=0.079 Sum_probs=121.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.+||+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.....+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~- 80 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVF-NCLTGFYKPTGGTILLRGQHIEGLPGHQIARM- 80 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCcceEEECCEECCCCCHHHHHhc-
Confidence 4589999999998 8999999999999999999999999999 9999982 23333322111111122
Q ss_pred CCeEEEccCceecceecCcchhHH----------------------------------Hhh-------------------
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR----------------------------------QKL------------------- 101 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------------------~~~------------------- 101 (240)
..+|++|+..+++.+++.++..+. ..+
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 246789988777766665543321 000
Q ss_pred ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
...++.+|++||||||++ +..+.++|.+++++.|.|||++||+++++ ..+||++++|++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~g 230 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV----------MGISDRIYVVNQG 230 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence 112588999999999988 45788999988764489999999999999 899999999998
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
++...|++++
T Consensus 231 ~i~~~~~~~~ 240 (255)
T PRK11300 231 TPLANGTPEE 240 (255)
T ss_pred eEEecCCHHH
Confidence 8877777654
No 50
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=2e-29 Score=214.44 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=121.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++|+||++++||+++|+||||||||||+ ++|+|+. ++|.++...+..........
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLL-RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 58899999988 8999999999999999999999999999 9999972 23333322111111112235
Q ss_pred eEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCcEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~lll 113 (240)
+|++|+..+++.+++.++..+... + ...++.+|++|+
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 159 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 899998877776666655433110 0 112588999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||||++ +..+.++|+++++ +|+|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFA----------EKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeeCCHHH
Confidence 999987 4578899998876 689999999999999 899999999999 8887777654
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-29 Score=214.23 Aligned_cols=157 Identities=20% Similarity=0.148 Sum_probs=120.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+. .....
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLL-RLIAGLERPDSGTILFGGEDATDVPV----QERNV 76 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCc----cccce
Confidence 58999999998 9999999999999999999999999999 9999972 23333221111 11235
Q ss_pred eEEEccCceecceecCcchhHHH----------------h-------h-----------------------chhhhccCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ----------------K-------L-----------------------GDDAYAKLD 110 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~----------------~-------~-----------------------~~~l~~~p~ 110 (240)
+|++|++.+++..++.++..+.. . + ...++.+|+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999877776666654433210 0 0 112588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ ...+.++|++++++.|+|||++|||++.+ ..+||++++|++ ++...|+++.+
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA----------LEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEecCHHHH
Confidence 999999988 45788999998764589999999999999 899999999998 88777776543
No 52
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.9e-29 Score=213.23 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=120.9
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++||++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++...++.... ....+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLL-KTLMGLLPVKSGSIRLDGEDITKLPPHERA-RAGIA 78 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHH-HhCeE
Confidence 4789999988 8999999999999999999999999999 9999972 233332221111111 12358
Q ss_pred EEEccCceecceecCcchhHHHh----------------h------------------------chhhhccCcEEEEcCc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK----------------L------------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~----------------~------------------------~~~l~~~p~lllLDEP 117 (240)
|++|+..+++.+++.++..+... + ...++.+|++|+||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999887776666655432110 0 1125889999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++ +..+.++|.+++++.+.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA----------RELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHc
Confidence 88 45788999988764589999999999999 889999999999 88878876654
No 53
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.1e-29 Score=219.60 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=122.5
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR 72 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~ 72 (240)
.++||+++|+++.| ++++||+|.+||+++|+||||||||||+ ++|+|+. ++|.++..........
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLF-QNLNGILKPSSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred CCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence 45689999999998 8899999999999999999999999999 9999972 3444432111111111
Q ss_pred cCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304 73 YAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL 109 (240)
Q Consensus 73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p 109 (240)
....+|++|++. .+...++.++..+... + ...++.+|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 234589999862 2223455554432100 0 11258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|+||||++ +..+.++|++++++.|.||+++|||++++ ..+|||+++|++ ++...|+++.+
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~----------~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV----------PLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999988 45788999998764589999999999999 889999999998 88888887654
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=2.7e-29 Score=209.84 Aligned_cols=150 Identities=21% Similarity=0.171 Sum_probs=115.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...++ .+ ...+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~v~~~g~~~~~~~~---~~-~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-RMIAGLEEPTSGRIYIGGRDVTDLPP---KD-RDIA 75 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCc---cc-ceEE
Confidence 4688999988 8999999999999999999999999999 9999972 23333221111 11 2358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++..++.++..+... + ...++.+|++|+||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998877766666655433110 0 11258899999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
||++ +..++++|++++++.|.|||++|||++++ ..+||++++|++ ++...
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~----------~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA----------MTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEECCEEEec
Confidence 9988 45788999998764589999999999999 899999999988 76544
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.8e-29 Score=212.59 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=121.5
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-c
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-T 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~ 71 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...++... .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-RCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 57889998876 6899999999999999999999999999 9999972 34444432221110 1
Q ss_pred ccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL 109 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p 109 (240)
.....+|++|+..+++.+++.++..+... + ...++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 12235899999888877777665543210 0 11158899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++|+||||++ +..+.++|++++++.|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV----------KRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence 9999999988 45788999998764589999999999999 899999999998 8877776543
No 56
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=226.04 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=132.9
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
+.+++++++|.| +++|||++++||+.+|+|.||||||||+ ++|.|+ .++|+.+...+|....+.+
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm-~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G- 80 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLM-KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG- 80 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHH-HHHhCcccCCcceEEECCEEeccCCHHHHHHcC-
Confidence 478999999999 8999999999999999999999999999 999997 4688888877777666666
Q ss_pred CeEEEccCceecceecCcchhHHHh----------------------hc-----------------------hhhhccCc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK----------------------LG-----------------------DDAYAKLD 110 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~~-----------------------~~l~~~p~ 110 (240)
+|+|+|+..+++.+|+.+|.-+... ++ ..++.+|+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence 5999999999999999988655321 00 01589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+|||||||+ .+++++.++++++ .|+|||++||-++++ .++|||+-+|.. +++.
T Consensus 161 iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev----------~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 161 LLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEV----------MAIADRVTVLRRGKVVG 220 (501)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHH----------HHhhCeeEEEeCCeEEe
Confidence 999999998 3589999999998 799999999999999 999999999999 7764
No 57
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=3.6e-29 Score=208.46 Aligned_cols=149 Identities=19% Similarity=0.150 Sum_probs=115.8
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++... .. .....+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTM-KIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIG 75 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCCcccch---HH-HHhhEE
Confidence 4788999988 9999999999999999999999999999 9999972 233333211 11 122358
Q ss_pred EEEccCceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~ 119 (240)
|++|+..+++..++.++..+... + ...++.+|++|+||||++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 155 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 99998877777777766543211 0 111588999999999988
Q ss_pred ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
+..+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...
T Consensus 156 ~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 156 GLDPDGIKELRELILSLRD-QGITVLISSHLLSEI----------QKVADRIGIINKGKLIEE 207 (208)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HHhcCEEEEEECCEEEec
Confidence 4578899998886 689999999999999 899999999998 76543
No 58
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=213.86 Aligned_cols=159 Identities=15% Similarity=0.117 Sum_probs=120.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
|++++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++....+ ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTF-YMVVGIVPRDAGNIIIDDEDISLLPLHARAR-RGI 80 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHH-hCe
Confidence 79999999998 8999999999999999999999999999 9999972 2333332211111112 235
Q ss_pred eEEEccCceecceecCcchhHHH-------------h-------h-----------------------chhhhccCcEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~~l~~~p~lll 113 (240)
+|++|+..+++.+++.++..+.. . + +..++.+|++|+
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 89999887776666655433210 0 0 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +..+.++++++++ +|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRET----------LAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHH----------HHhcCEEEEEeCCeEEeeCCHHHH
Confidence 999987 4567888888876 689999999999999 899999999998 88877776543
No 59
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-30 Score=209.58 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=124.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
|++++|++++| ++++|++|++|.+++|+||||||||||| .+++++ .++|.++...+.....+. .
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLL-S~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~--l 77 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSKELAKK--L 77 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHH-HHHHHhccccCceEEEeeeecccCChHHHHHH--H
Confidence 68999999999 9999999999999999999999999999 999887 457777776654433221 1
Q ss_pred eEEEccCceecceecCcchhHH------------------------------Hh----h-chh---------hhccCcEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFR------------------------------QK----L-GDD---------AYAKLDVI 112 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~------------------------------~~----~-~~~---------l~~~p~ll 112 (240)
.++-|.+.....+|+.+...|. .+ + ||+ ++++.+++
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence 3344444433344444333221 11 1 221 58999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+||||.+ ..++++.|++++++.|+||++|-||++|+ ..|+|+|+-|++ +++..|+|+++.
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA----------S~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA----------SCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH----------HhhhhheeeecCCEEEecCCHHHhc
Confidence 9999977 23799999999998999999999999999 999999999999 999999998643
No 60
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=2.8e-29 Score=213.78 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=120.5
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~ 74 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++.. .....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLL-RCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 57899999887 8899999999999999999999999999 9999972 2343333221111 11122
Q ss_pred CCeEEEccCceecceecCcchhHH---------------------------Hhh-----------------------chh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR---------------------------QKL-----------------------GDD 104 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~---------------------------~~~-----------------------~~~ 104 (240)
..+|++|+..+++.+++.++..+. ..+ ...
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 358999987777666655443210 000 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|+||||++ +..+.++|+++.++.|+|||++|||++++ .++||++++|++ ++...|+
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA----------KKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEECCEEEecCC
Confidence 589999999999988 45788999988764589999999999999 899999999998 8887777
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 230 ~~~~ 233 (243)
T TIGR02315 230 PSEL 233 (243)
T ss_pred HHHh
Confidence 6543
No 61
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=218.24 Aligned_cols=150 Identities=22% Similarity=0.189 Sum_probs=126.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA 90 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~ 90 (240)
++|+||+++.||+++|+|-||||||||+ |+++++ .++|+++..++.... .|....++|||...++|..|
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLv-R~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-RLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHH-HHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 5799999999999999999999999999 999998 467888887766542 23344589999999999999
Q ss_pred cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304 91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED 122 (240)
Q Consensus 91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~ 122 (240)
+.+|..|...+ +..++.+|++||+|||++ +.+
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 99887663211 123689999999999988 456
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+.+.|.++.++.++||+++|||++++ .++.|||.+|++ +++.+|+|+++
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEA----------lriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEA----------LRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHH----------HhccceEEEecCCeEEEeCCHHHH
Confidence 77777788776789999999999999 999999999999 99999999764
No 62
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.9e-29 Score=202.69 Aligned_cols=149 Identities=23% Similarity=0.201 Sum_probs=115.2
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++.........+
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLL-RCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4688999988 8999999999999999999999999999 9999972 334443322110111223358
Q ss_pred EEEccCceecceecCcchhH--------HHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEec
Q 026304 78 VVTHDGAKLPCWALPELTSF--------RQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGL 143 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~--------~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtH 143 (240)
|++|++.+++..++.++..+ ...+...++.+|++++||||++ +..+.++|++++++.+.|+|++||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99998887777777766532 1123556799999999999988 457889999988733799999999
Q ss_pred ChhhhhcccchHHHHHhhccceeeecc
Q 026304 144 DGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 144 d~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|++++ ..+||++++|++
T Consensus 160 ~~~~~----------~~~~d~i~~l~~ 176 (178)
T cd03229 160 DLDEA----------ARLADRVVVLRD 176 (178)
T ss_pred CHHHH----------HHhcCEEEEEeC
Confidence 99999 889999999864
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.8e-29 Score=210.81 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=118.9
Q ss_pred CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch
Q 026304 7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK 69 (240)
Q Consensus 7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~ 69 (240)
.++||+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...+...
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 2 NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLL-HLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred CCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 34689999999876 7899999999999999999999999999 9999972 3444443332211
Q ss_pred h--cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhh
Q 026304 70 D--TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDA 105 (240)
Q Consensus 70 ~--~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l 105 (240)
. .+....+|++|+..+++.+++.++..+... + ...+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 111235899999887777777766543110 0 1115
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
+.+|++||||||++ ...+.++|++++++.|.|||++|||++++ .. +|++++|++ ++...+
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~----------~~-~~~~~~l~~G~i~~~~ 227 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA----------KR-MSRQLEMRDGRLTAEL 227 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------Hh-hCEEEEEECCEEEEEe
Confidence 88999999999988 45788999988754589999999999998 65 469999988 766443
No 64
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=3.4e-29 Score=220.11 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=125.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
+++++|++++| ++|+||++++||+++|+||||||||||+ ++|+|+. ++|+++... ....+ ...
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl-~~l~Gl~~~~~G~i~i~g~~~~~~--~~~~~-~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTM-KIITGYLPPDSGSVQVCGEDVLQN--PKEVQ-RNI 77 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccC--hHHHH-hce
Confidence 58999999998 9999999999999999999999999999 9999972 344433221 11112 235
Q ss_pred eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL 114 (240)
+|++|.+.+++.+++.+++.+...+ ...++.+|++|+|
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999998888888887776542211 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
|||++ +..++++++++++ ++|||++||+++++ .++|||+++|++ ++...|+++.+.
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~~~----------~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQEV----------EAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99988 4578899988853 69999999999999 999999999999 998889887653
No 65
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=228.56 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=131.8
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.++.++++|++|+| |++|||++.+||+++|+|.||||||||+ |+|+|. .++|+.+...++......
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLm-KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLM-KILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHH-HHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 34589999999999 9999999999999999999999999999 999996 457777766555544444
Q ss_pred CCCeEEEccCceecceecCcchhHHHh-----------------------h-----------------------chhhhc
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK-----------------------L-----------------------GDDAYA 107 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~-----------------------~-----------------------~~~l~~ 107 (240)
+ +.+++|+..+.+.+++.+|..+... + ...+..
T Consensus 84 G-I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 84 G-IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred C-cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 4 4899999999999999877643211 0 111477
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++++|+|||||+ .+.++++++++++ +|.+||++||.++++ .++||||.+|++ +++...+
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei----------~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLDEV----------FEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHH----------HHhcCEEEEEeCCEEeeecc
Confidence 999999999998 3479999999997 899999999999999 999999999999 8777666
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.7e-29 Score=212.05 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=119.6
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc-hhcccCC
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS-KDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~-~~~~~~~ 75 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++. .......
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLL-RCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4678888876 8899999999999999999999999999 9999972 334443322210 1111123
Q ss_pred CeEEEccCceecceecCcchhHH--------------------Hh-------h-----------------------chhh
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR--------------------QK-------L-----------------------GDDA 105 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~--------------------~~-------~-----------------------~~~l 105 (240)
.+|++|+..+++.+++.++..+. .. + ...+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 58999988777766665544321 00 0 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++||||||++ ...+.++|++++++.|.|||++|||++++ ..+||++++|++ ++...|++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA----------REYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeecCH
Confidence 88999999999988 45788999998764589999999999999 889999999998 88777776
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+.+
T Consensus 230 ~~~ 232 (241)
T cd03256 230 AEL 232 (241)
T ss_pred HHh
Confidence 543
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=5.2e-29 Score=208.27 Aligned_cols=149 Identities=21% Similarity=0.166 Sum_probs=113.7
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~ 74 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...+... .....
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-KLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 58899999887 8999999999999999999999999999 9999972 2333332221111 01122
Q ss_pred CCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~ll 112 (240)
..+|++|+..+++..++.++..+... + ...++.+|++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 35899998877776677665443210 0 11258899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+||||++ +..+.++|+++.+ +|.|||++|||++++ ..+||++++|++
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~i~~l~~ 212 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLV----------DRVAHRVIILDD 212 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhcCEEEEecC
Confidence 9999988 4578899999876 689999999999999 889999999875
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=6.7e-29 Score=212.35 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=121.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc------chh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS------SKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~------~~~ 70 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+. ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLL-RCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 79999999998 8999999999999999999999999999 9999972 23433322110 001
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH-------------h-------h-----------------------chhhhc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GDDAYA 107 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~~l~~ 107 (240)
......+|++|+..+++..++.++..+.. . + ...++.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 11123589999887777666665543210 0 0 112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++||||||++ +..+.++|.++.+ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFA----------RDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999988 4578889998876 689999999999999 899999999998 8877777654
No 69
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=6e-29 Score=201.77 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=115.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++...+ .. .....+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIG 76 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEE
Confidence 4688999887 8999999999999999999999999999 9999972 3343332211 11 122358
Q ss_pred EEEccCceecceecCcchhH------HHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 78 VVTHDGAKLPCWALPELTSF------RQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~------~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
|++|+..+++..++.++..+ ...+...++.+|++|+||||++ +..+.++|+++.+ +|.|+|++|||+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~ 155 (173)
T cd03230 77 YLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL 155 (173)
T ss_pred EEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH
Confidence 99999888877777766431 1123556799999999999988 4579999999987 589999999999
Q ss_pred hhhhcccchHHHHHhhccceeeecc
Q 026304 146 DYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 146 ~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+++ ..+||++++|++
T Consensus 156 ~~~----------~~~~d~i~~l~~ 170 (173)
T cd03230 156 EEA----------ERLCDRVAILNN 170 (173)
T ss_pred HHH----------HHhCCEEEEEeC
Confidence 999 889999999975
No 70
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=212.26 Aligned_cols=159 Identities=15% Similarity=0.105 Sum_probs=120.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +..............+|++
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLl-k~l~Gl~~p~~G~-i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGE-LLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeE-EEECCEEHHHhhCceEEEe
Confidence 4689999999998 8999999999999999999999999999 9999973 2332 3211111111112358999
Q ss_pred ccCceecceecCcchhHHH------h-------h-----------------------chhhhccCcEEEEcCccC-----
Q 026304 81 HDGAKLPCWALPELTSFRQ------K-------L-----------------------GDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~~~------~-------~-----------------------~~~l~~~p~lllLDEP~~----- 119 (240)
|+..+++..++.+++.+.. . + ...++.+|++||||||++
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~ 167 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 9887777667766543210 0 0 112589999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+..+.++|+++.++.+.|||++|||++++ ..+||++++|++ ++...++.
T Consensus 168 ~~~~l~~~L~~~~~~~~~tviivsHd~~~~----------~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 168 TRIEMQDLIESLWQQHGFTVLLVTHDVSEA----------VAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeeccc
Confidence 45788889888654689999999999999 899999999998 77766553
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-29 Score=218.08 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=119.8
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~ 71 (240)
+|+++||++.| +++|||+|++||+++|+||||||||||+ ++|+|+. ++|.++...+.....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLI-QHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 48999999987 6799999999999999999999999999 9999972 344444322111111
Q ss_pred ccCCCeEEEccCc-eecceecCcchhHHH-------------------h--h-----------------------chhhh
Q 026304 72 RYAIDSVVTHDGA-KLPCWALPELTSFRQ-------------------K--L-----------------------GDDAY 106 (240)
Q Consensus 72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~-------------------~--~-----------------------~~~l~ 106 (240)
.....+|++|++. .+...++.+++.+.. . + +..++
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1234589999752 222235544433210 0 0 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++||||||++ +..++++|++++++.|.|||++|||++++ ..+||||++|++ ++...|+++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV----------AKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHH
Confidence 9999999999988 45799999999764589999999999999 899999999999 888888876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
.+
T Consensus 231 ~~ 232 (287)
T PRK13637 231 EV 232 (287)
T ss_pred HH
Confidence 53
No 72
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=99.96 E-value=1.1e-28 Score=200.66 Aligned_cols=173 Identities=43% Similarity=0.763 Sum_probs=139.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecce--ecCcchhHHHhhchhhhcc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW--ALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 108 (240)
|++..++|||+|||||.|++.+..+...|+++..++|..+.|+....++++++...+.. .......+. ..+..+
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~~~~~~~----~~~~~~ 76 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPIDNLFEII----DILEND 76 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEESSGGGGG----GGCCTT
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCCeEEecCCCcccccccchhhHHHHH----HHhccC
Confidence 78999999999999999989888888999999999998888887656888887776665 222222221 222345
Q ss_pred CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304 109 LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE 187 (240)
Q Consensus 109 p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~ 187 (240)
++++++||.+|+. ++.+++..+.+ .|+.|++.+.|.++.+++|+++.+|..+||+|..|+..|..||.++.++.|+..
T Consensus 77 ~dvI~IDEaQFf~~~i~~l~~~~~~-~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~kl~avC~~Cg~~A~~t~R~~~ 155 (176)
T PF00265_consen 77 YDVIGIDEAQFFDEQIVQLVEILAN-KGIPVICAGLDTDFRGEPFGGSPRLLPLADKITKLKAVCEVCGRKATFTQRIVD 155 (176)
T ss_dssp CSEEEESSGGGSTTTHHHHHHHHHH-TT-EEEEEEESB-TTSSB-TTHHHHHHH-SEEEEE-EE-TTTSSEE-EEEEEET
T ss_pred CCEEEEechHhhHHHHHHHHHHHHh-CCCeEEEEeeCCccccCcchhHHHHHhhCCeEEEeccEECCCCCceeEEEEEcC
Confidence 9999999999987 78888888776 799999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCcceEEeecchhh
Q 026304 188 ETETEIIGGADVYMPVCRQHY 208 (240)
Q Consensus 188 ~~~~~~~g~~~~y~~~c~~~~ 208 (240)
.++++.+||++.|+++|++||
T Consensus 156 ~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 156 DGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp TSSSS-TTSTTTEEEE-CTTH
T ss_pred CCCEEEECCCCeEEEechhhC
Confidence 999999999999999999998
No 73
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=9.1e-29 Score=207.36 Aligned_cols=151 Identities=20% Similarity=0.142 Sum_probs=116.9
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR 72 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~ 72 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++... + ...+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~-~-~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFATVDGFDVVKE-P-AEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEEcccC-H-HHHH
Confidence 57889999876 7899999999999999999999999999 9999982 234433211 1 1112
Q ss_pred cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD 110 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ 110 (240)
...+|++|+..+++.+++.++..+.... ...++.+|+
T Consensus 78 -~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 78 -RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred -hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 2358999998888777777665432110 112589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
+|+||||++ +..+.++|+++.+ +|.|||++|||++++ ..+||++++|++ ++...
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEV----------ERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEeec
Confidence 999999988 4578899999876 689999999999999 899999999988 76543
No 74
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.5e-29 Score=215.19 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=117.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++..............
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLF-MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 68999999998 8999999999999999999999999999 9999972 34444321111111111235
Q ss_pred eEEEccCce-ecceecCcchhHH-------------------Hhh-----------------------chhhhccCcEEE
Q 026304 77 SVVTHDGAK-LPCWALPELTSFR-------------------QKL-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 77 ~~v~q~~~~-~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~p~lll 113 (240)
+|++|+... +...++.++..+. ..+ +..++.+|++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 899987542 1222232222110 000 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +..+.++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 160 LDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLI----------YEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 999988 4578899999876 589999999999999 899999999999 88888887653
No 75
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.8e-29 Score=217.38 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=120.8
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeecc--ch
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKS--SK 69 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~--~~ 69 (240)
||+++|++++| ++|+||+|++||+++|+||||||||||+ ++|+|+ .++|.++..... ..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLL-QHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEECccccccccH
Confidence 68999999987 7899999999999999999999999999 999997 234544421110 01
Q ss_pred hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304 70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~ 104 (240)
.......+|++|++ .++. .++.+++.+... + +..
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a 158 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI 158 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence 11122358999975 4444 355544433110 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..+.++|+++++ .|.|||++|||++++ ..+||||++|++ ++...|+
T Consensus 159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~----------~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDV----------ADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence 589999999999988 4578899998876 699999999999999 899999999999 9988898
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 228 ~~~~ 231 (288)
T PRK13643 228 PSDV 231 (288)
T ss_pred HHHH
Confidence 8764
No 76
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.4e-28 Score=197.86 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=108.6
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++...++.. .+....+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~-~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGKEVSFASPRD-ARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCcCCHHH-HHhcCeE
Confidence 4788999998 8999999999999999999999999999 9999972 2333332221111 1122347
Q ss_pred EEEccCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRS 151 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 151 (240)
|++| +.........+...++.+|++|+||||++ +..+.++|+++.+ ++.|||++|||++++
T Consensus 79 ~~~q---------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~--- 145 (163)
T cd03216 79 MVYQ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEV--- 145 (163)
T ss_pred EEEe---------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH---
Confidence 8877 23223333345667899999999999987 4578899999876 589999999999998
Q ss_pred cchHHHHHhhccceeeecc-eee
Q 026304 152 FGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 152 f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
..+||++++|++ ++.
T Consensus 146 -------~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 146 -------FEIADRVTVLRDGRVV 161 (163)
T ss_pred -------HHhCCEEEEEECCEEE
Confidence 899999999987 654
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.1e-29 Score=216.26 Aligned_cols=159 Identities=22% Similarity=0.183 Sum_probs=120.8
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
++|+++|+++.| ++|+||+|++||+++|+||||||||||+ ++|+|+. ++|+++...+. .....
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~ 79 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLL-LHLNGIYLPQRGRVKVMGREVNAENE--KWVRS 79 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEECCCCCH--HHHHh
Confidence 379999999988 8999999999999999999999999999 9999972 33443321111 11122
Q ss_pred CCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCcE
Q 026304 75 IDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLDV 111 (240)
Q Consensus 75 ~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~l 111 (240)
..+|++|++. .+...++.++..+... ++..++.+|++
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3589999852 2333455554433110 01225899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|+||||++ +.+++++|+++++ .|.|||++|||++++ .++|||+++|++ ++...|+++.+
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLA----------AEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHh
Confidence 99999988 4578999999986 599999999999999 899999999999 88888887644
No 78
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.6e-29 Score=225.77 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=117.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA 90 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~ 90 (240)
++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++...++... .+....+|++|+..+++.++
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLL-r~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 6899999999999999999999999999 9999972 34444433322111 11223589999998888888
Q ss_pred cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304 91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED 122 (240)
Q Consensus 91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~ 122 (240)
+.+++.+.... ...++.+|++||||||++ +..
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 87776542110 112589999999999988 457
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+.+.|.++.++.|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~----------~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEA----------MRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHH----------HHhCCEEEEEECCEEEecCCHHHH
Confidence 88899988764689999999999999 899999999999 88888877654
No 79
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=212.00 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=124.2
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec-------
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK------- 66 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~------- 66 (240)
+..+|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++....
T Consensus 2 ~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 2 SENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 34579999999998 8999999999999999999999999999 9999972 3344332110
Q ss_pred ---c-chhcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------
Q 026304 67 ---S-SKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L--------------------- 101 (240)
Q Consensus 67 ---~-~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~--------------------- 101 (240)
. .........+|++|++.+++.+++.++..+.. . +
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 0 00111123589999988877777766653210 0 0
Q ss_pred ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
+..++.+|++|+||||++ +..+.++|+++++ .|.|||++|||++++ ..+|||+++|++ +
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~----------~~~~d~i~~l~~G~ 229 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFA----------RHVSSHVIFLHQGK 229 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCE
Confidence 112588999999999988 4578899999876 699999999999999 889999999999 8
Q ss_pred eeccCCccee
Q 026304 172 CELCGKRAFF 181 (240)
Q Consensus 172 ~~~~g~~~~~ 181 (240)
++..|+++.+
T Consensus 230 i~~~~~~~~~ 239 (257)
T PRK10619 230 IEEEGAPEQL 239 (257)
T ss_pred EEEeCCHHHh
Confidence 8877776543
No 80
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=9.3e-29 Score=210.51 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=121.2
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.... +...
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~~ 78 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM-DVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAG 78 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCeecCCCCHHHH-HhcC
Confidence 378999999998 8999999999999999999999999999 9999972 23333322211111 1123
Q ss_pred CeEEEccCceecceecCcchhHHH--------------------h-------h-----------------------chhh
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ--------------------K-------L-----------------------GDDA 105 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~--------------------~-------~-----------------------~~~l 105 (240)
.+|++|+..+++.+++.++..+.. . + ...+
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 589999888887777665543310 0 0 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|+||||++ +..++++|+++.+ +.|||++||+++++ ..+||++++|++ ++...|++
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFV----------RSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHH----------HHhCCEEEEEECCeEEeeCCH
Confidence 88999999999988 4578899988864 68999999999999 899999999998 88777766
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+.+
T Consensus 227 ~~~ 229 (242)
T TIGR03411 227 DQV 229 (242)
T ss_pred HHH
Confidence 543
No 81
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.7e-29 Score=219.73 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=122.6
Q ss_pred CceEEEcceeEee---------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe
Q 026304 8 PAAVTTNQVNSGR---------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM 64 (240)
Q Consensus 8 ~~~l~~~~ls~~~---------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~ 64 (240)
.++|+++||++.| ++||||+|++||+++|+|+||||||||+ ++|+|+ .++|+++..
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl-~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHHcCCCCCCcEEEECCEEcCc
Confidence 4589999999876 6799999999999999999999999999 999997 245555543
Q ss_pred eccch-hcccCCCeEEEccC--ceecceecCcchhH--------------------HHhh--------------------
Q 026304 65 IKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSF--------------------RQKL-------------------- 101 (240)
Q Consensus 65 ~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~--------------------~~~~-------------------- 101 (240)
.+... ....+..+|++|++ .+.+.+++.+++.. ...+
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 32211 11123468999986 35554444332211 0000
Q ss_pred ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
+..++.+|++||+||||+ +.+++++|+++.++.|.|||++|||++.+ ..+||+|++|++
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~----------~~~adrv~vm~~G 231 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV----------EHIADEVMVMYLG 231 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence 112589999999999988 45899999999875699999999999999 889999999999
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
+++..|+++.
T Consensus 232 ~ive~g~~~~ 241 (327)
T PRK11308 232 RCVEKGTKEQ 241 (327)
T ss_pred EEEEECCHHH
Confidence 9988887654
No 82
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=8.5e-29 Score=220.10 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=124.5
Q ss_pred CceEEEcceeEee------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCce
Q 026304 8 PAAVTTNQVNSGR------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRN 61 (240)
Q Consensus 8 ~~~l~~~~ls~~~------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~ 61 (240)
.++|+++||+++| ++|+||+|.+||+++|+|+||||||||+ ++|+|+ .++|++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLl-k~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA-RAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCcEEEECCEE
Confidence 4689999999876 4799999999999999999999999999 999997 345555
Q ss_pred EEeeccch-hcccCCCeEEEccC--ceecceecCcchhHHH---------------------hh----------------
Q 026304 62 IAMIKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ---------------------KL---------------- 101 (240)
Q Consensus 62 i~~~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~---------------------~~---------------- 101 (240)
+...+... ....+..+|++|++ .+++.+++.+++.+.. .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 54332211 11123468999986 4666666655532110 00
Q ss_pred --------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceee
Q 026304 102 --------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTK 167 (240)
Q Consensus 102 --------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~ 167 (240)
+..++.+|++||+||||+ +.+++++|+++.++.|.|+|++|||++.+ ..+||||++
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~----------~~~~dri~v 234 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV----------KHISDRVLV 234 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEE
Confidence 112589999999999988 45799999999875699999999999999 899999999
Q ss_pred ecc-eeeccCCcce
Q 026304 168 LTA-RCELCGKRAF 180 (240)
Q Consensus 168 l~~-~~~~~g~~~~ 180 (240)
|++ +++..|+++.
T Consensus 235 l~~G~ive~g~~~~ 248 (331)
T PRK15079 235 MYLGHAVELGTYDE 248 (331)
T ss_pred EECCEEEEEcCHHH
Confidence 999 8888887654
No 83
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.4e-28 Score=210.01 Aligned_cols=156 Identities=20% Similarity=0.164 Sum_probs=115.7
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
||+++|+++.| ++|+||+|++|++++|+||||||||||+ ++|+|+. ..|. +..............+|++|+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-NLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeCC
Confidence 58999999998 8999999999999999999999999999 9999973 2232 221110000011124899998
Q ss_pred CceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCccC-
Q 026304 83 GAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQF- 119 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~~- 119 (240)
..+++..++.++..+... + ...++.+|++||||||++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 877776666655433110 0 112588999999999988
Q ss_pred -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--c-eeeccCC
Q 026304 120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--A-RCELCGK 177 (240)
Q Consensus 120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--~-~~~~~g~ 177 (240)
+..+.++|++++++.|.|||++|||++++ ..+||++++|+ + ++...++
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~----------~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA----------VFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCcEEEEEec
Confidence 45788899888653589999999999999 89999999997 3 6654443
No 84
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=1.5e-28 Score=206.82 Aligned_cols=151 Identities=19% Similarity=0.113 Sum_probs=114.6
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-cccC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-TRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~~~~ 74 (240)
||+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.... ....
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLL-KLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 58899999987 8999999999999999999999999999 9999972 23443332221110 1112
Q ss_pred CCeEEEccCceecceecCcchhHHH-------------------hh-----------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-------------------KL-----------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l~~~p~ll 112 (240)
..+|++|++.+++..++.++..+.. .+ ...++.+|++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3589999887766666655543311 00 11258899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
+||||++ +..+.++|+++.+ .+.|||++|||++++ ..+||++++|++ ++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i 215 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLI----------SRRSYRMLTLSDGHL 215 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEE
Confidence 9999988 4578899998876 589999999999999 899999999988 54
No 85
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=1.4e-28 Score=205.38 Aligned_cols=148 Identities=20% Similarity=0.190 Sum_probs=111.7
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++..............+
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL-RCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4688999988 8999999999999999999999999999 9999972 233332110000011122358
Q ss_pred EEEccCceecceecCcchhHHH--------------------hh-----------------------chhhhccCcEEEE
Q 026304 78 VVTHDGAKLPCWALPELTSFRQ--------------------KL-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~--------------------~~-----------------------~~~l~~~p~lllL 114 (240)
|++|+..+++..++.++..+.. .+ ...++.+|++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999887777666665543210 00 1125889999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|||++ +..+.++|+++++ .|.|||++|||++++ ..+||++++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~----------~~~~d~i~~l~~ 210 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFA----------REVADRVIFMDD 210 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 99987 4578899999886 689999999999999 899999999976
No 86
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.7e-29 Score=215.34 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=122.4
Q ss_pred CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304 7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT 71 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~ 71 (240)
..++|+++|+++.| ++++||+|.+||+++|+||||||||||+ ++|+|+ .++|+++...+.. ..
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl-~~i~G~~~p~~G~i~~~g~~i~~~~~~-~~ 79 (279)
T PRK13635 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLA-KLLNGLLLPEAGTITVGGMVLSEETVW-DV 79 (279)
T ss_pred CCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHH-HH
Confidence 34589999999988 7899999999999999999999999999 999997 2445544322211 11
Q ss_pred ccCCCeEEEccCc-eecceecCcchhHHHh------------h------------------------------chhhhcc
Q 026304 72 RYAIDSVVTHDGA-KLPCWALPELTSFRQK------------L------------------------------GDDAYAK 108 (240)
Q Consensus 72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~------------~------------------------------~~~l~~~ 108 (240)
+ ...+|++|+.. .+...++.+++.+... . ...++.+
T Consensus 80 ~-~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 80 R-RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred h-hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2 23589999863 4444566555433100 0 1125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++||||||++ +..++++|++++++.|.|||++|||++.+ . .||++++|++ ++...|+++.+
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA----------A-QADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHHH
Confidence 99999999988 45789999999874589999999999998 6 5999999999 88888876643
No 87
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=212.03 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=122.4
Q ss_pred CCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304 5 NLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT 71 (240)
Q Consensus 5 ~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~ 71 (240)
+.++.+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.. .
T Consensus 6 ~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~ 82 (265)
T PRK10575 6 NHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSK--A 82 (265)
T ss_pred CCCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEehhhCCHH--H
Confidence 4456789999999998 9999999999999999999999999999 9999972 233333221111 1
Q ss_pred ccCCCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------chhh
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GDDA 105 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~~l 105 (240)
.....+|++|+..+++.+++.++..+. ..+ ...+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 122358899886655555554333210 000 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++||||||++ ...+.++|.+++++.|.|||++||+++++ ..+||++++|++ ++...|++
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i----------~~~~d~i~~l~~G~i~~~~~~ 232 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA----------ARYCDYLVALRGGEMIAQGTP 232 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEecCH
Confidence 89999999999988 45788999998764589999999999999 899999999998 88777766
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+++
T Consensus 233 ~~~ 235 (265)
T PRK10575 233 AEL 235 (265)
T ss_pred HHh
Confidence 543
No 88
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.3e-28 Score=205.41 Aligned_cols=154 Identities=22% Similarity=0.157 Sum_probs=112.9
Q ss_pred EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEE
Q 026304 11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ...-.+..............+|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 4577887765 6799999999999999999999999999 9999973 222222211111101112358999
Q ss_pred ccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCcc
Q 026304 81 HDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~ 118 (240)
|...+++..++.++..+... + ...++.+|++||||||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 98877776777665543210 0 11258899999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--c-eeecc
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--A-RCELC 175 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--~-~~~~~ 175 (240)
+ +..++++|+++.++.|.|||++|||++++ ..+||++++|+ + ++...
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA----------VFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhCCEEEEEECCCCEEEEE
Confidence 8 45788999988654589999999999999 89999999998 5 66543
No 89
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=219.08 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=119.9
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------CCceEEeeccc
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------NGRNIAMIKSS 68 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------~g~~i~~~~~~ 68 (240)
+|+++||++.| ++||||+|++||+++|+|+||||||||+ ++|+|+.. +|+++..++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 68999999987 8899999999999999999999999999 99999732 23333322221
Q ss_pred hhc--ccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304 69 KDT--RYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL----------------------- 101 (240)
Q Consensus 69 ~~~--~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~----------------------- 101 (240)
... +....+|++|++. +.+.+++.++... ...+
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 111 2224589999863 4544444321100 0000
Q ss_pred ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
...++.+|++||+||||+ +.+++++|+++.++.|.|+|++|||++.+ ..+||||++|++ +
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~----------~~~adri~vm~~G~ 231 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV----------AEAAHKIIVMYAGQ 231 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence 112588999999999988 45799999999875699999999999999 899999999999 9
Q ss_pred eeccCCcce
Q 026304 172 CELCGKRAF 180 (240)
Q Consensus 172 ~~~~g~~~~ 180 (240)
++..|+++.
T Consensus 232 ive~g~~~~ 240 (326)
T PRK11022 232 VVETGKAHD 240 (326)
T ss_pred EEEECCHHH
Confidence 988887654
No 90
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.96 E-value=9.8e-29 Score=207.17 Aligned_cols=148 Identities=19% Similarity=0.165 Sum_probs=110.2
Q ss_pred EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hc
Q 026304 11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DT 71 (240)
Q Consensus 11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~ 71 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHH-HHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 4677887765 7899999999999999999999999999 9999972 2333332222111 11
Q ss_pred ccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL 109 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p 109 (240)
+....+|++|+..+++.+++.++..+... + ...++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 12235899998887777677655443110 0 11258899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++||||||++ +..+.++|++++++.|+|||++|||++++ . +||++++|++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~-~~d~v~~l~~ 215 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA----------E-YADRIIELRD 215 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH----------h-hhcEEEEeeC
Confidence 9999999988 45788999998764589999999999998 6 9999999976
No 91
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=9.8e-29 Score=231.48 Aligned_cols=161 Identities=20% Similarity=0.194 Sum_probs=124.4
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...++.. .+..
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~ 86 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLM-KIIAGIVPPDSGTLEIGGNPCARLTPAK-AHQL 86 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHH-HHhC
Confidence 4589999999998 8999999999999999999999999999 9999973 2333322111111 1112
Q ss_pred CCeEEEccCceecceecCcchhHH--------Hh------------------------------hchhhhccCcEEEEcC
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR--------QK------------------------------LGDDAYAKLDVIGIDE 116 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~--------~~------------------------------~~~~l~~~p~lllLDE 116 (240)
..+|++|+..+++.+++.+++.+. .+ +...++.+|++|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 358999998777777776554321 00 0122689999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++ +..+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEI----------RQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecChHHc
Confidence 988 4578999999876 699999999999999 899999999999 88878876543
No 92
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=1.4e-28 Score=208.79 Aligned_cols=157 Identities=16% Similarity=0.084 Sum_probs=118.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||+|.+|++++|+||||||||||+ ++|+|+. ++|.++...+. ..+ ...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~i~~~~~--~~~-~~i 76 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLF-SLLTRLYVAQEGQISVAGHDLRRAPR--AAL-ARL 76 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccCCh--hhh-hhE
Confidence 57899999988 8999999999999999999999999999 9999972 23333322111 111 235
Q ss_pred eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL 114 (240)
+|++|+..+++..++.++..+... + +..++.+|++|+|
T Consensus 77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899998776666666555432110 0 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +..+.+.|++++++.|.|||++|||++++ .. ||++++|++ ++...|+++.+
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~-~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI----------EA-DDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH----------hh-CCEEEEEeCCeEEEeCCHHHH
Confidence 99988 45788999998754589999999999998 64 999999998 87777766543
No 93
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=2.3e-28 Score=206.05 Aligned_cols=154 Identities=15% Similarity=0.089 Sum_probs=111.8
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc-hhc
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS-KDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~-~~~ 71 (240)
+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++. ...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 57889998876 6799999999999999999999999999 9999972 334443322210 011
Q ss_pred ccCCCeEEEccC--ceecceecCcchhHH---------------------Hhh------------------------chh
Q 026304 72 RYAIDSVVTHDG--AKLPCWALPELTSFR---------------------QKL------------------------GDD 104 (240)
Q Consensus 72 ~~~~~~~v~q~~--~~~~~~~~~~~~~~~---------------------~~~------------------------~~~ 104 (240)
.....+|++|+. .+++.+++.++..+. ..+ ...
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 122358899886 344444443332110 000 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
++.+|++||||||++ +..+.+.|++++++.|.|||++|||++.+ ..+||++++|++ ++..
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV----------AKIADRVAVMYAGKIVE 226 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEeCCEEEe
Confidence 588999999999988 45788999998763489999999999999 889999999998 6653
No 94
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=210.23 Aligned_cols=157 Identities=17% Similarity=0.102 Sum_probs=118.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++. ..+ ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~-~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLI-KLINRLIDPTEGSILIDGVDIKTIDVI-DLR-RKI 79 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcChH-Hhh-hcE
Confidence 68999999998 8999999999999999999999999999 9999972 234333222111 112 235
Q ss_pred eEEEccCceecceecCcchhHH---------------Hhh------------------------chhhhccCcEEEEcCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFR---------------QKL------------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~---------------~~~------------------------~~~l~~~p~lllLDEP 117 (240)
+|++|+..+++ .++.++..+. ..+ ...++.+|++||||||
T Consensus 80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 80 GMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88999876654 3444332210 000 1125889999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++ +..+.+.|++++++.|.|||++|||++++ ..+||++++|++ ++...|++.+
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA----------KRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH----------HHhCCEEEEEeCCEEEEeCCHHH
Confidence 87 45788889888764589999999999999 899999999999 8877776654
No 95
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.96 E-value=1.1e-28 Score=222.53 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=118.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCc----eEEeeccch--hcccCCCeEEEccCcee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGR----NIAMIKSSK--DTRYAIDSVVTHDGAKL 86 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~----~i~~~~~~~--~~~~~~~~~v~q~~~~~ 86 (240)
++|+||+|++||+++|+||||||||||+ ++|+|+. ++|+ ++...+... ..|....+|+||+..++
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLl-r~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~ 118 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLL-RAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM 118 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCC
Confidence 7899999999999999999999999999 9999972 3332 222221111 11223468999999999
Q ss_pred cceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC-----
Q 026304 87 PCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 87 ~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~----- 119 (240)
+.+++.+|..+...+ +..++.+|++||||||++
T Consensus 119 p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~ 198 (382)
T TIGR03415 119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPL 198 (382)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 988888777643210 112589999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+.++.+.|.++.++.++|||++|||++++ .++||||++|++ ++...|+++++
T Consensus 199 ~r~~l~~~L~~l~~~~~~TII~iTHdl~e~----------~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 199 IRTQLQDELLELQAKLNKTIIFVSHDLDEA----------LKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence 45788999998765689999999999999 999999999999 99888987654
No 96
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.7e-29 Score=216.16 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=119.9
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec-c-ch
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK-S-SK 69 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~-~-~~ 69 (240)
.|+++|++++| |+|+||+|++||+++|+||||||||||+ ++|+|+ .++|+++.... . ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLL-QHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 38899999887 6899999999999999999999999999 999997 23444432110 0 01
Q ss_pred hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304 70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~ 104 (240)
.......+|++|++ .+++ .++.+++.+... + +..
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 11122358999975 3443 455554432110 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..++++|++++++.|.|||++|||++++ ..+||||++|++ ++...|+
T Consensus 160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~----------~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA----------ARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence 589999999999988 45788999999764699999999999999 899999999999 8888888
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 230 ~~~~ 233 (290)
T PRK13634 230 PREI 233 (290)
T ss_pred HHHH
Confidence 7653
No 97
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=1.4e-28 Score=206.54 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=116.7
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++... ... ....
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTL-KMLTGELRPTSGTAYINGYSIRTD--RKA-ARQS 76 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccc--hHH-Hhhh
Confidence 4678888776 7899999999999999999999999999 9999972 233333211 111 1223
Q ss_pred CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll 113 (240)
.+|++|+..+++..++.++..+... + ...++.+|++|+
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5899998877776676655443210 0 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||||++ ...+.+.|+++++ +.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEA----------EALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHH----------HHhcCEEEEEECCEEEecCCHHH
Confidence 999988 4578888988865 48999999999999 899999999998 8877776543
No 98
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-28 Score=217.12 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=122.2
Q ss_pred CCCceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEee--
Q 026304 6 LKPAAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMI-- 65 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~-- 65 (240)
...++|+++|++++| |+|+||+|++|++++|+||||||||||+ ++|+|+ .++|.++...
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV-THFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCEEcccccc
Confidence 345689999999987 7899999999999999999999999999 999997 2344443221
Q ss_pred -----------c-cchhcccCCCeEEEccC--ceecceecCcchhHHH------------h-------------------
Q 026304 66 -----------K-SSKDTRYAIDSVVTHDG--AKLPCWALPELTSFRQ------------K------------------- 100 (240)
Q Consensus 66 -----------~-~~~~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~------------~------------------- 100 (240)
+ ..........+|++|++ .+++. ++.+++.+.. +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 0 00111122358999986 35543 5544432210 0
Q ss_pred ------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhc
Q 026304 101 ------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLA 162 (240)
Q Consensus 101 ------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~a 162 (240)
++..++.+|++||||||++ ...++++|.++.+ +|.|||++|||++++ ..+|
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~----------~~~a 243 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHV----------LEVA 243 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhC
Confidence 0122589999999999988 4578899988876 699999999999999 8999
Q ss_pred cceeeecc-eeeccCCccee
Q 026304 163 DTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 163 d~i~~l~~-~~~~~g~~~~~ 181 (240)
||+++|++ ++...|+++.+
T Consensus 244 dri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 244 DEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999 88888887653
No 99
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=211.31 Aligned_cols=160 Identities=20% Similarity=0.160 Sum_probs=119.6
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...+.. .....
T Consensus 1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~G~i~~~g~~~~~~~~~--~~~~~ 77 (258)
T PRK13548 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLL-RALSGELSPDSGEVRLNGRPLADWSPA--ELARR 77 (258)
T ss_pred CeEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcccCCHH--Hhhhh
Confidence 378999999998 9999999999999999999999999999 9999972 233333222111 11123
Q ss_pred CeEEEccCceecceecCcchhHHH------------h-------h-----------------------chhhh------c
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ------------K-------L-----------------------GDDAY------A 107 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~------~ 107 (240)
.+|++|+..++...++.++..+.. . + ...++ .
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 589999877655556655433210 0 0 01135 4
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+||||++ +..+.++|++++++.|.|||++|||++++ ..+||++++|++ ++...|++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA----------ARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhcCEEEEEECCEEEeeCCHHH
Confidence 899999999988 45788999998733689999999999999 889999999998 8877777654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 228 ~ 228 (258)
T PRK13548 228 V 228 (258)
T ss_pred H
Confidence 3
No 100
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=1.7e-28 Score=210.26 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=121.3
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec-------c---
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK-------S--- 67 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~-------~--- 67 (240)
|+++||++.| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++...+ +
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTIL-RILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4789999988 8999999999999999999999999999 9999972 3444443221 0
Q ss_pred c-hhcccCCCeEEEccCceecceecCcchhHHH-------------h-------h-----------------------ch
Q 026304 68 S-KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GD 103 (240)
Q Consensus 68 ~-~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~ 103 (240)
. ........+|++|+..+++..++.++..+.. . + ..
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 0 0011223589999888777667665554310 0 0 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++||||||++ +..+.++|+++.++.|.|||++|||++++ ..+||++++|++ ++...|
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA----------REFADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeC
Confidence 2588999999999987 45788999988764589999999999999 899999999999 887777
Q ss_pred Cccee
Q 026304 177 KRAFF 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
+++.+
T Consensus 230 ~~~~~ 234 (252)
T TIGR03005 230 KPDEI 234 (252)
T ss_pred CHHHH
Confidence 66543
No 101
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=1.2e-28 Score=208.03 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=115.2
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----h--CC------ceEEeeccchhcc
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----D--NG------RNIAMIKSSKDTR 72 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~--~g------~~i~~~~~~~~~~ 72 (240)
|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. . .| +++...+......
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4789999988 8999999999999999999999999999 9999975 2 23 2221111001111
Q ss_pred cCCCeEEEccCceecceecCcchhHHH-------------h-------h-------------------------chhhhc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-------------------------GDDAYA 107 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-------------------------~~~l~~ 107 (240)
....+|++|+..++ .+++.++..+.. . + ...++.
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 12358999987666 556554432210 0 0 112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
+|++|+||||++ +..++++|+++++ + .|||++|||++++ ..+||++++|++ ++...|+++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQA----------ARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHH----------HHhCCEEEEEeCCEEEEecCcc
Confidence 999999999988 4578999999876 5 8999999999999 899999999999 887777654
No 102
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-28 Score=211.26 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=121.4
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
..+|+++|++++| ++++||++.+|++++|+||||||||||+ ++|+|+. ++|+++...+.. ..+ .
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLL-RTLSRLMTPAHGHVWLDGEHIQHYASK-EVA-R 81 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEEhhhCCHH-HHh-h
Confidence 3589999999998 9999999999999999999999999999 9999972 233333221111 111 2
Q ss_pred CCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------chhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~~l~~~ 108 (240)
..+|++|+..+++..++.++..+. ..+ +..++.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 358999987666554444332210 000 1225899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++||||||++ +..+.++|.++.++.|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA----------CRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999987 45788999988764589999999999999 999999999999 88888876543
No 103
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=4.2e-29 Score=199.87 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=130.5
Q ss_pred eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCeE
Q 026304 10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
|+.+++|+++| --..+++|+.||+++|+||||||||||| ++|+|+ .++|++....+|.. +. ..+
T Consensus 1 ~l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLL-nLIAGF~~P~~G~i~i~g~d~t~~~P~~---RP-VSm 75 (231)
T COG3840 1 MLALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLL-NLIAGFETPASGEILINGVDHTASPPAE---RP-VSM 75 (231)
T ss_pred CccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHH-HHHHhccCCCCceEEEcCeecCcCCccc---CC-hhh
Confidence 57889999999 3367889999999999999999999999 999997 45677766655532 22 378
Q ss_pred EEccCceecceecCcchhHHHh----------------------------h-----c---------hhhhccCcEEEEcC
Q 026304 79 VTHDGAKLPCWALPELTSFRQK----------------------------L-----G---------DDAYAKLDVIGIDE 116 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~~~~----------------------------~-----~---------~~l~~~p~lllLDE 116 (240)
+||++++|..+++.+|..+... + + ..++++-++++|||
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 9999999999999887654211 0 1 12588999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
|++ +.+++.++.+++++++.|++||||.++.+ ..++|+++++++ ++.+.|+...+.
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da----------~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA----------ARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HHhhhceEEEeCCEEEeeccHHHHh
Confidence 977 56899999999988999999999999999 999999999999 999988765543
No 104
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=209.62 Aligned_cols=160 Identities=13% Similarity=0.088 Sum_probs=118.2
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSS 68 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~ 68 (240)
++++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. ++...+..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35689999999998 8999999999999999999999999999 9999973 1232 22110000
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------------- 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------------- 101 (240)
........+|++|+..+++. ++.++..+.. .+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 01112235899998766653 5544432210 00
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
...++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++..
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~----------~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNMQQA----------ARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHH----------HHhCCEEEEEECCEEEE
Confidence 112588999999999988 4578899988843 68999999999999 899999999998 8877
Q ss_pred cCCcce
Q 026304 175 CGKRAF 180 (240)
Q Consensus 175 ~g~~~~ 180 (240)
.|+++.
T Consensus 229 ~g~~~~ 234 (253)
T PRK14242 229 VGPTEQ 234 (253)
T ss_pred eCCHHH
Confidence 777654
No 105
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=210.54 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=122.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----------CCceEEeec--c-c
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----------NGRNIAMIK--S-S 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----------~g~~i~~~~--~-~ 68 (240)
.++|+++||+++| ++++||++.+||+++|+||||||||||+ ++|+|+.- +|.++.... . .
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLL-RHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3589999999998 8999999999999999999999999999 99999742 122221110 0 0
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHH--------------------Hh-------h--------------------
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QK-------L-------------------- 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~-------~-------------------- 101 (240)
........+|++|+..+++.+++.++..+. .. +
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence 011112348999988777766665544321 00 0
Q ss_pred ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
...++.+|++||||||++ +..+.+.|++++++.|.|||++|||++++ ..+||++++|++ +
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~----------~~~~d~i~~l~~g~ 230 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA----------LRYCERIVALRQGH 230 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence 112588999999999988 45788999998764589999999999999 899999999999 8
Q ss_pred eeccCCccee
Q 026304 172 CELCGKRAFF 181 (240)
Q Consensus 172 ~~~~g~~~~~ 181 (240)
+...|+++.+
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 8888877654
No 106
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=210.02 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=121.3
Q ss_pred CCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeec
Q 026304 5 NLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIK 66 (240)
Q Consensus 5 ~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~ 66 (240)
+...++|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. ++....
T Consensus 7 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 7 NVAQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred cccceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3456799999999998 8999999999999999999999999999 9999973 2342 221110
Q ss_pred cchhcccCCCeEEEccCceecceecCcchhHHH-------------------hh--------------------------
Q 026304 67 SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------------KL-------------------------- 101 (240)
Q Consensus 67 ~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------------~~-------------------------- 101 (240)
..........+|++|+..+++ .++.++..+.. .+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 000111223589999877666 55554443210 00
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++.
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQQA----------ARISDYTGFFLMGELI 232 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHH----------HHhCCEEEEEECCEEE
Confidence 112588999999999988 4578888988853 79999999999999 899999999999 888
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++.+
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK14268 233 EFGQTRQI 240 (258)
T ss_pred EeCCHHHH
Confidence 77776543
No 107
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2e-28 Score=229.42 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=122.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.+||+++|++++| ++|+||+|++||+++|+||||||||||+ ++|+|+. ++|+++...++... +..
T Consensus 3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~-~~~ 80 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLM-KVLSGIHEPTKGTITINNINYNKLDHKLA-AQL 80 (510)
T ss_pred CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCcCCCccEEEECCEECCCCCHHHH-HHC
Confidence 3689999999998 8999999999999999999999999999 9999973 33443322221111 112
Q ss_pred CCeEEEccCceecceecCcchhHH-------------------Hh-------h-----------------------chhh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-------------------QK-------L-----------------------GDDA 105 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-------------------~~-------~-----------------------~~~l 105 (240)
..+|++|+..+++.+++.++..+. .. + +..+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 358999987666655554332210 00 0 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|||||||+ +..++++|+++++ .|+|||++|||++++ ..+||++++|++ ++...|++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~----------~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEI----------RRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEeeecch
Confidence 89999999999988 4578999999987 699999999999999 899999999998 88777776
Q ss_pred ce
Q 026304 179 AF 180 (240)
Q Consensus 179 ~~ 180 (240)
+.
T Consensus 230 ~~ 231 (510)
T PRK09700 230 SD 231 (510)
T ss_pred hh
Confidence 54
No 108
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-28 Score=215.84 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=118.8
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeec-----
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIK----- 66 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~----- 66 (240)
+|+++|+++.| ++++||+|.+||+++|+||||||||||+ ++|+|+. ..| +++....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFI-EHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEEeceecccccccccc
Confidence 48999999988 6799999999999999999999999999 9999972 223 2221000
Q ss_pred -----------------cchhcccCCCeEEEccC--ceecceecCcchhHHHh---------------------h-----
Q 026304 67 -----------------SSKDTRYAIDSVVTHDG--AKLPCWALPELTSFRQK---------------------L----- 101 (240)
Q Consensus 67 -----------------~~~~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~---------------------~----- 101 (240)
..........+|+||++ .++ ..++.+++.+... +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 00111123358999974 333 3455554433110 0
Q ss_pred -----------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHH
Q 026304 102 -----------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDI 158 (240)
Q Consensus 102 -----------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L 158 (240)
+..++.+|++||||||++ +..++++|+++++ .|.|||++|||++++
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~---------- 228 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNV---------- 228 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHH----------
Confidence 112589999999999988 4578999999886 699999999999999
Q ss_pred Hhhccceeeecc-eeeccCCccee
Q 026304 159 IPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 159 ~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
..+||||++|++ ++...|+++++
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHH
Confidence 899999999999 88888887654
No 109
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.8e-28 Score=212.17 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=122.5
Q ss_pred EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------------hCCceEEeeccc
Q 026304 11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------------DNGRNIAMIKSS 68 (240)
Q Consensus 11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------------~~g~~i~~~~~~ 68 (240)
|+++||+..| ++||||++++||+++|+|.|||||||+. +.|+|+. ++|+++..++..
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~-~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLA-KAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHH-HHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 7899999988 7899999999999999999999999999 9999862 345555555443
Q ss_pred h--hcccCCCeEEEccCc--eecceecCcch---------------------hHHHhh-----------------ch---
Q 026304 69 K--DTRYAIDSVVTHDGA--KLPCWALPELT---------------------SFRQKL-----------------GD--- 103 (240)
Q Consensus 69 ~--~~~~~~~~~v~q~~~--~~~~~~~~~~~---------------------~~~~~~-----------------~~--- 103 (240)
. ..|.+.++++||++. +.|.+++.+.. .+...+ ||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2 234445689999853 33333322100 000000 11
Q ss_pred ------hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 104 ------DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 104 ------~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
.++.+|++||.||||+ +.+++++|+++.++.|.++|++|||+..+ .++||||++|++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv----------a~~aDri~VMYaG 230 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV----------AEIADRVAVMYAG 230 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcceEEEEECc
Confidence 1588999999999988 56899999999987899999999999999 999999999999
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
+++..|+.+.
T Consensus 231 ~iVE~g~~~~ 240 (316)
T COG0444 231 RIVEEGPVEE 240 (316)
T ss_pred EEEEeCCHHH
Confidence 9999998754
No 110
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.3e-28 Score=202.97 Aligned_cols=152 Identities=20% Similarity=0.151 Sum_probs=113.8
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-hcccCCCeEEEccC
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-DTRYAIDSVVTHDG 83 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~~~~~~~~~v~q~~ 83 (240)
++++|+++.| ++++||++.+|++++|+||||||||||+ ++|+|+. ...-.+....... .......+|++|+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTI-RMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4688999988 8999999999999999999999999999 9999972 2111222111110 01112358999988
Q ss_pred ceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC--
Q 026304 84 AKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF-- 119 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~-- 119 (240)
.+++..++.++..+.... ...++.+|++|+||||++
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 777776776654332110 111588999999999987
Q ss_pred ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+..+.+.|+++.+ ++.|||++|||++++ ..+||++++|++ ++..
T Consensus 160 D~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 160 DPVNVELLKDVIRELAR-AGKTVILSTHQMELV----------EELCDRVLLLNKGRAVL 208 (210)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHH----------HHhhhEEEEEeCCEEEe
Confidence 4578889988876 589999999999999 899999999988 6543
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.95 E-value=2.9e-28 Score=210.48 Aligned_cols=161 Identities=14% Similarity=0.061 Sum_probs=118.3
Q ss_pred eEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc
Q 026304 10 AVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS 67 (240)
Q Consensus 10 ~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~ 67 (240)
||+++|+++.| ++|+||+|++||+++|+||||||||||+ ++|+|+. ++|.++...+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLA-RLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEccccCH
Confidence 68899998876 6799999999999999999999999999 9999972 34444332221
Q ss_pred ch-hcccCCCeEEEccC--ceecceecCcchhHH--------------------Hhh-----------------------
Q 026304 68 SK-DTRYAIDSVVTHDG--AKLPCWALPELTSFR--------------------QKL----------------------- 101 (240)
Q Consensus 68 ~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~--------------------~~~----------------------- 101 (240)
.. .......+|++|++ .+++..++.+++.+. ..+
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 11 01122358999985 344444544432110 000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++||||||++ ...+.++|+++.++.|.|||++|||++++ ..+||++++|++ ++.
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV----------QSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHHhcEEEEEeCCEEE
Confidence 112588999999999987 35788999998764589999999999999 889999999999 888
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++.+
T Consensus 231 ~~g~~~~~ 238 (265)
T TIGR02769 231 EECDVAQL 238 (265)
T ss_pred EECCHHHH
Confidence 77776543
No 112
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=2.1e-28 Score=217.60 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=122.0
Q ss_pred CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CC------ceEEeecc
Q 026304 8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NG------RNIAMIKS 67 (240)
Q Consensus 8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g------~~i~~~~~ 67 (240)
.++|+++|+++.| ++||||+|++||+++|+|+||||||||+ ++|+|+.- .| +++..++.
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~-~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA-FALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 4589999999887 7899999999999999999999999999 99999732 23 33322222
Q ss_pred chh--cccCCCeEEEccC--ceecceecCcchhH--------------------HHhh----------------------
Q 026304 68 SKD--TRYAIDSVVTHDG--AKLPCWALPELTSF--------------------RQKL---------------------- 101 (240)
Q Consensus 68 ~~~--~~~~~~~~v~q~~--~~~~~~~~~~~~~~--------------------~~~~---------------------- 101 (240)
... .|....+|+||+. .+.+.+++.+++.. ...+
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 111 1223468999986 44554444322110 0000
Q ss_pred ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
+..++.+|++||+||||+ +.+++++|+++.++.|.|+|++|||++.+ ..+||||++|++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~----------~~~~Dri~vm~~G 238 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV----------AGICDKVLVMYAG 238 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH----------HHhCCEEEEEECC
Confidence 112589999999999988 45799999999875699999999999999 889999999999
Q ss_pred eeeccCCccee
Q 026304 171 RCELCGKRAFF 181 (240)
Q Consensus 171 ~~~~~g~~~~~ 181 (240)
+++..|+++.+
T Consensus 239 ~ive~g~~~~i 249 (330)
T PRK09473 239 RTMEYGNARDV 249 (330)
T ss_pred EEEEECCHHHH
Confidence 99888876543
No 113
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-28 Score=213.89 Aligned_cols=159 Identities=18% Similarity=0.113 Sum_probs=121.2
Q ss_pred ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304 9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~ 72 (240)
++|+++|+++.| |+|+||+|++||+++|+||||||||||+ ++|+|+ .++|.++...+.. ..+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~ 80 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTV-RLIDGLLEAESGQIIIDGDLLTEENVW-DIR 80 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHH-HHH
Confidence 379999999987 7899999999999999999999999999 999997 2344444321111 112
Q ss_pred cCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304 73 YAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL 109 (240)
Q Consensus 73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p 109 (240)
...+|++|++. .+...++.++..+... + +..++.+|
T Consensus 81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 81 -HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred -hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 23589999863 4555566655443210 0 11258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++||||||++ +..++++|++++++.|+|||++|||++.+ . +|||+++|++ ++...|+++.+
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~----------~-~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV----------A-LSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999988 45788999999864599999999999988 5 7999999999 88888887653
No 114
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.8e-28 Score=212.94 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=119.3
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
||+++|++++| ++++||+|.+||+++|+||||||||||+ ++|+|+. ++|+++...+.........
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLF-LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 58899999988 8899999999999999999999999999 9999972 3444432111111111233
Q ss_pred CeEEEccCc-eecceecCcchhHHH------------h-------h-----------------------chhhhccCcEE
Q 026304 76 DSVVTHDGA-KLPCWALPELTSFRQ------------K-------L-----------------------GDDAYAKLDVI 112 (240)
Q Consensus 76 ~~~v~q~~~-~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~~~p~ll 112 (240)
.+|++|+.. .+...++.++..+.. . + +..++.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 589999852 222235555443211 0 0 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||++ +..++++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLV----------PVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999988 4578899999876 599999999999999 889999999998 88888887654
No 115
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-28 Score=220.00 Aligned_cols=160 Identities=17% Similarity=0.127 Sum_probs=123.6
Q ss_pred eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc--hhcccCCC
Q 026304 10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS--KDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~--~~~~~~~~ 76 (240)
||++ ||+++| ..++||++++||+++|+||||||||||+ ++|+|+. ++|+++...... .....+..
T Consensus 1 ~l~~-~l~k~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 1 MLEL-NFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLI-NAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred CeEE-EEEEEeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 5788 999998 4489999999999999999999999999 9999972 334333211000 01112235
Q ss_pred eEEEccCceecceecCcchhHHHh-------------h-----------------------chhhhccCcEEEEcCccC-
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-------------L-----------------------GDDAYAKLDVIGIDEAQF- 119 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------~-----------------------~~~l~~~p~lllLDEP~~- 119 (240)
+|++|+..+++.+++.++..+... + +..++.+|++||||||++
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 899999999988888777654210 0 122589999999999988
Q ss_pred -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+..+.+.|+++.++.|.|+|++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEI----------LRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH----------HHhCCEEEEEeCCEEEEecCHHHH
Confidence 45788999998774589999999999999 999999999999 88888887643
No 116
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=217.20 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=119.6
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------CCceEEeecc
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------NGRNIAMIKS 67 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------~g~~i~~~~~ 67 (240)
++|+++||+++| +++|||+|.+||+++|+|+||||||||+ ++|+|+.- +|+++...+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIA-KAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 379999999987 7899999999999999999999999999 99999741 2333322222
Q ss_pred chh--cccCCCeEEEccCc--eecceecCcchhH-------------------------HHhh-----------------
Q 026304 68 SKD--TRYAIDSVVTHDGA--KLPCWALPELTSF-------------------------RQKL----------------- 101 (240)
Q Consensus 68 ~~~--~~~~~~~~v~q~~~--~~~~~~~~~~~~~-------------------------~~~~----------------- 101 (240)
... .+....+|+||++. +.+.+++.+++.. ...+
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 111 11224589999864 3343333221110 0000
Q ss_pred ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304 102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT 166 (240)
Q Consensus 102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~ 166 (240)
+..++.+|++||+|||++ +.+++++|+++.++.|.|||++|||++.+ ..+||||+
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v----------~~~~dri~ 230 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML----------SQWADKIN 230 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEE
Confidence 112589999999999988 46899999999875699999999999999 99999999
Q ss_pred eecc-eeeccCCcce
Q 026304 167 KLTA-RCELCGKRAF 180 (240)
Q Consensus 167 ~l~~-~~~~~g~~~~ 180 (240)
+|++ +++..|+++.
T Consensus 231 vm~~G~ive~g~~~~ 245 (330)
T PRK15093 231 VLYCGQTVETAPSKE 245 (330)
T ss_pred EEECCEEEEECCHHH
Confidence 9999 9988887654
No 117
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=3.5e-28 Score=196.76 Aligned_cols=186 Identities=34% Similarity=0.524 Sum_probs=161.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
..|.++.+.|||+|||||.|++.+..+...|+++..+.+..+.|++...+.++.+...++..+....++...+....-..
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~ 81 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP 81 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCC
Confidence 36889999999999999988899988899999999999999999887777888888888887777777766653221111
Q ss_pred -CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304 109 -LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT 186 (240)
Q Consensus 109 -p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~ 186 (240)
.+++++||.+|++ ++...|.+++++.|..|++.+.|.+|.+|+|+++..|+.+||+|..|+..|..||.+++++.|+.
T Consensus 82 ~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~At~~~Rl~ 161 (201)
T COG1435 82 PVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLI 161 (201)
T ss_pred CcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccCCCccHHHHHHHHHHHHHHHHHHHHhCCcceEEEEec
Confidence 4799999999964 78899999998559999999999999999999999999999999999999999999999999998
Q ss_pred CC------CcEEEeCCcceEEeecchhhccCccc
Q 026304 187 EE------TETEIIGGADVYMPVCRQHYVNGQVV 214 (240)
Q Consensus 187 ~~------~~~~~~g~~~~y~~~c~~~~~~~~~~ 214 (240)
++ ++++.+||.+.|.++||+||......
T Consensus 162 ~~~~a~~~~~~i~IGg~e~Y~a~CR~h~~~~~~~ 195 (201)
T COG1435 162 NGGPAVYEGPQILIGGNESYEARCRKHHKEPGKE 195 (201)
T ss_pred CCCCCccCCCeEEECCCcceeehhhhhhhccccc
Confidence 75 67889999999999999999765433
No 118
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.5e-28 Score=203.82 Aligned_cols=148 Identities=13% Similarity=0.147 Sum_probs=113.9
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++| +++|+||||||||||+ ++|+|+. ++|.++...+ ...+ ...+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~-~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLM-RILATLTPPSSGTIRIDGQDVLKQP--QKLR-RRIG 75 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCCccccch--HHHH-hheE
Confidence 4788999988 89999999999 9999999999999999 9999972 2343332211 1112 2358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++.+++.++..+... + +..++.+|++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999888777777665543110 0 11258999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
||++ +..+.++|+++++ +.|||++|||++++ ..+|||+++|++ ++...
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~----------~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDV----------ESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEec
Confidence 9988 4578889988875 48999999999999 889999999998 76544
No 119
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-28 Score=212.65 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=120.4
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.+++++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|+++...+. .....
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~ 78 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLF-RHFNGILKPTSGSVLIRGEPITKENI--REVRK 78 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCH--HHHHh
Confidence 368999999988 8999999999999999999999999999 9999972 33443322111 11122
Q ss_pred CCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCcE
Q 026304 75 IDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLDV 111 (240)
Q Consensus 75 ~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~l 111 (240)
..+|++|++. .+...++.+++.+... ++..++.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3589999863 2223455444432110 01225899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||||++ ...+.++++++.++.|.|||++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~----------~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV----------PEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCeEEEECCHHHH
Confidence 99999987 45788999998764589999999999999 899999999999 88888887654
No 120
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=2.8e-28 Score=202.26 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=117.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-------CCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-------NGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-------~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+. . +|+++...++....+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~-~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLA-KTIMGHPKYEVTEGEILFKGEDITDLPPEERAR-LG 78 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCccEEEECCEECCcCCHHHHhh-Cc
Confidence 4688999988 8999999999999999999999999999 9999972 1 233322221111111 22
Q ss_pred CeEEEccCceecceecCcchhHH-----------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR-----------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV 138 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv 138 (240)
.+|++|+..+++..++.++.... ..+...++.+|++|+||||++ ...+.++|+++++ .+.||
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~ti 157 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSV 157 (200)
T ss_pred EEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEE
Confidence 58899988777766665544221 112345789999999999987 4578899999876 58999
Q ss_pred EEEecChhhhhcccchHHHHHh-hccceeeecc-eeeccCC
Q 026304 139 VVAGLDGDYLRRSFGSVLDIIP-LADTVTKLTA-RCELCGK 177 (240)
Q Consensus 139 i~vtHd~~~~~~~f~~~~~L~~-~ad~i~~l~~-~~~~~g~ 177 (240)
|++||+++.+ .. +||++++|++ ++...|+
T Consensus 158 ii~sh~~~~~----------~~~~~d~i~~l~~G~i~~~~~ 188 (200)
T cd03217 158 LIITHYQRLL----------DYIKPDRVHVLYDGRIVKSGD 188 (200)
T ss_pred EEEecCHHHH----------HHhhCCEEEEEECCEEEEEcc
Confidence 9999999988 77 7999999998 7776663
No 121
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=5.5e-28 Score=193.80 Aligned_cols=199 Identities=61% Similarity=1.039 Sum_probs=177.3
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchh-hh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDD-AY 106 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~-l~ 106 (240)
-.+|++..|+||+.|||||-|++.+....+.|+.+...++..+.|+....++.+++.-++.+++.+ ..+...++.. +-
T Consensus 24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~-a~~~s~f~~d~~~ 102 (234)
T KOG3125|consen 24 MTRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPD-ASFLSEFGKDALN 102 (234)
T ss_pred CCCceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCC-chhHHHHHHHHhc
Confidence 458999999999999999988788887788999999888888888876678899998888888887 3444444433 34
Q ss_pred ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304 107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT 186 (240)
Q Consensus 107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~ 186 (240)
.+-++|.+||.+|+.++.+.++++++.+|++|++...|-+|.+++|+++..|..+||.+..|..+|..||..+.|+.|+.
T Consensus 103 ~~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg~il~Lvplad~v~kLtavC~~Cg~~a~Ft~R~~ 182 (234)
T KOG3125|consen 103 GDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFKRKPFGAILDLVPLADSVTKLTAVCEECGADARFTLRKT 182 (234)
T ss_pred CcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchhhCcchhhhhhHhhhhhhhhhhhhhhhhcccceeEeeec
Confidence 48999999999999999999999998789999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCcceEEeecchhhc-cCcccccccccccccccc
Q 026304 187 EETETEIIGGADVYMPVCRQHYV-NGQVVIGAARNVLEFHKV 227 (240)
Q Consensus 187 ~~~~~~~~g~~~~y~~~c~~~~~-~~~~~~~~~~~~~~~~~~ 227 (240)
.+..+.++||.+.|.++|++||. -+..+.++.+..++..+-
T Consensus 183 ~~K~ve~iggaDvy~pvcr~~yv~~~~~~~e~~kt~~e~~dk 224 (234)
T KOG3125|consen 183 NDKEVEVIGGADVYMPVCRKCYVVCGQCATEKTKTVCEVSDK 224 (234)
T ss_pred CCceeEEccCcceeecccceeEEEeccccchhhccccccCCC
Confidence 99999999999999999999998 788899999998876554
No 122
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-28 Score=203.71 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=113.5
Q ss_pred EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
|+++|++++| ..++||++.+|++++|+||||||||||+ ++|+|+. ++|.++...++ .+ ...+|+
T Consensus 1 i~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~gl~~~~~G~i~~~g~~~~~~~~---~~-~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGVDVTAAPP---AD-RPVSML 75 (211)
T ss_pred CEEEeEEEEeCCEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCcCCH---hH-ccEEEE
Confidence 4688999998 4599999999999999999999999999 9999972 23333322111 12 235899
Q ss_pred EccCceecceecCcchhHHH------------hh------------------------------chhhhccCcEEEEcCc
Q 026304 80 THDGAKLPCWALPELTSFRQ------------KL------------------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~~------------~~------------------------------~~~l~~~p~lllLDEP 117 (240)
+|+..+++..++.++..+.. .. ...++.+|++|+||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99888777666655543210 00 1125889999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
++ +..++++|++++++.+.|||++|||++++ ..+||++++|++ ++..
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA----------KRLAQRVVFLDNGRIAA 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HhhhCEEEEEECCEEee
Confidence 88 45788999988764589999999999999 899999999998 6653
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-28 Score=212.65 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=118.1
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|++++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++...++.... ...
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLA-LHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKL 78 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEECCccccHHHH-Hhh
Confidence 58899999988 8999999999999999999999999999 9999972 334333222111111 123
Q ss_pred CeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccCcEE
Q 026304 76 DSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVI 112 (240)
Q Consensus 76 ~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~ll 112 (240)
.+|++|++. .+...++.+++.+... + +..++.+|++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 589999864 2444455554432110 0 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||++ +..+++.|+++++ .|.|||++|||++.+ . .||++++|++ ++...|+++++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEEL----------H-DADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------h-hCCEEEEEECCEEEEECCHHHH
Confidence 9999988 4578899999876 699999999999988 5 5999999999 88888877653
No 124
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=4.2e-28 Score=204.78 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=114.5
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD- 70 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~- 70 (240)
+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 589999999876 7899999999999999999999999999 9999972 23443332221111
Q ss_pred -cccCCCeEEEccCceecceecCcchhHHH------------h-------h-----------------------chhhhc
Q 026304 71 -TRYAIDSVVTHDGAKLPCWALPELTSFRQ------------K-------L-----------------------GDDAYA 107 (240)
Q Consensus 71 -~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~~ 107 (240)
.+....+|++|+..+++.+++.++..+.. . + ...++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11223589999887777666665543210 0 0 112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
+|++||||||++ ...+.++|++++++.|.|||++|||++++ .. ||++++|++ ++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA----------AR-CDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------Hh-CCEEEEEECCEEE
Confidence 999999999988 45788999998764589999999999987 54 999999987 654
No 125
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.1e-28 Score=213.61 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=119.1
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc--h
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS--K 69 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~--~ 69 (240)
.++++|+++.| |+|+||+|++||+++|+||||||||||+ ++|+|+ .++|.++...... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLI-QNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 48899999887 6799999999999999999999999999 999997 2344444321110 1
Q ss_pred hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304 70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~ 104 (240)
.......+|+||++ .+++ .++.+++.+... + +..
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara 159 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI 159 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 11122358999975 3443 245444332100 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..+.++++++.++.|.|||++|||++++ ..+|||+++|++ ++...|+
T Consensus 160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~----------~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV----------ARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence 589999999999988 45788999998764689999999999999 899999999999 8888888
Q ss_pred cce
Q 026304 178 RAF 180 (240)
Q Consensus 178 ~~~ 180 (240)
++.
T Consensus 230 ~~~ 232 (286)
T PRK13646 230 PKE 232 (286)
T ss_pred HHH
Confidence 764
No 126
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=2.2e-28 Score=204.34 Aligned_cols=148 Identities=21% Similarity=0.159 Sum_probs=112.1
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccCC
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~~ 75 (240)
++++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++.. ......
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLL-KLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4678888887 7899999999999999999999999999 9999972 2333332221111 111123
Q ss_pred CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll 113 (240)
.+|++|+..+++..++.++..+... + ...++.+|++|+
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 5899998888777677665543210 0 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
||||++ +..+.+.|+++.+ +|.|||++|||++++ ..+||++++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~----------~~~~d~i~~l~~ 211 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELV----------DTTRHRVIALER 211 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 999988 4578899999876 589999999999999 889999999975
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.3e-28 Score=220.94 Aligned_cols=150 Identities=23% Similarity=0.165 Sum_probs=121.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA 90 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~ 90 (240)
++|+||+|++||+++|+||||||||||+ ++|+|+ .++|+++...++... .+....+|++|...+++.+|
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLL-r~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTV-RMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 8999999999999999999999999999 999997 356666654433221 11234689999999999999
Q ss_pred cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304 91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED 122 (240)
Q Consensus 91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~ 122 (240)
+.+|..+...+ ...++.+|++||||||++ +..
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~ 167 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS 167 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 98876543210 112589999999999988 457
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+.+.+.++.++.|+|||++|||++++ ..+||||++|++ ++..+|+++++
T Consensus 168 l~~~l~~l~~~~~~Tii~vTHd~~ea----------~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 168 MQDELKKLQATLQKTIVFITHDLDEA----------IRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEeeCCHHHH
Confidence 88899988764689999999999999 999999999999 99999987654
No 128
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-28 Score=228.41 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=122.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc------hhcc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS------KDTR 72 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~------~~~~ 72 (240)
.+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+.. .|. +...... ...+
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLM-KVLSGVYPHGTYEGE-IIFEGEELQASNIRDTE 80 (506)
T ss_pred CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeE-EEECCEECCCCCHHHHH
Confidence 3589999999998 8999999999999999999999999999 99999743 232 2211100 0111
Q ss_pred cCCCeEEEccCceecceecCcchhHH---------------Hh-------h-----------------------chhhhc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFR---------------QK-------L-----------------------GDDAYA 107 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~---------------~~-------~-----------------------~~~l~~ 107 (240)
....+|++|+..+++.+++.+++.+. .. + +..++.
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 12358999987776666655433221 00 0 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++||||||++ +..++++|.++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEV----------KAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH----------HHhcCEEEEEECCEEeeeccccc
Confidence 999999999988 4578899999876 689999999999999 899999999999 8887777654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 3
No 129
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.7e-28 Score=209.43 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=118.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ..| .++...+.. ......
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLL-KCFARLLTPQSGTVFLGDKPISMLSSR--QLARRL 78 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCcEEEECCEEhHHCCHH--HHhhhe
Confidence 68999999998 8999999999999999999999999999 9999972 223 222111111 111235
Q ss_pred eEEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKLD 110 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p~ 110 (240)
+|++|+..+++.+++.++..+. .. + ...++.+|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 8899987666555554443221 00 0 112589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +..+.++|+++++ .|.|||++|||++++ .++||++++|++ ++...|+++.+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQA----------SRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHH----------HHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999987 4578899988876 589999999999999 899999999998 88777766543
No 130
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=206.88 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=118.7
Q ss_pred eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304 10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
||+++|++++| ..++||++.+|++++|+||||||||||+ ++|+|+. ++|+++..... .+ ...+|
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~-~~i~~ 75 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLL-NLIAGFLTPASGSLTLNGQDHTTTPP---SR-RPVSM 75 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCeecCcCCh---hh-ccEEE
Confidence 58999999999 5699999999999999999999999999 9999972 23333221111 11 23589
Q ss_pred EEccCceecceecCcchhHH-------------------Hhh-----------------------chhhhccCcEEEEcC
Q 026304 79 VTHDGAKLPCWALPELTSFR-------------------QKL-----------------------GDDAYAKLDVIGIDE 116 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~p~lllLDE 116 (240)
++|+..+++.+++.++..+. ..+ ...++.+|++|+|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99987777665555443221 000 112589999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++ +..+.++|+++.++.|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA----------ARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEeCCHHH
Confidence 988 45788999988764589999999999999 899999999998 8887777654
No 131
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=3.2e-28 Score=204.43 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=112.7
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-- 70 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-- 70 (240)
+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 36788998876 7899999999999999999999999999 9999972 34444333222111
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhcc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAK 108 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~ 108 (240)
.+....+|++|+..+++.+++.++..+... + ...++.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 111235899999877777677665543110 0 1125889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
|++||||||++ +..+.+.|++++++.+.|||++|||++++ .. ||++++|++ ++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~----------~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA----------KK-LDRVLEMKDGQL 219 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------hh-cCEEEEEeCCEe
Confidence 99999999988 45788999988764589999999999988 54 799999987 54
No 132
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.95 E-value=4.1e-28 Score=206.46 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=114.7
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----hCCc------eEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----DNGR------NIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----~~g~------~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++|+||+|++|++++|+||||||||||+ ++|+|+. ..|. ++...+.....+ ..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLS-KTIAGHPSYEVTSGTILFKGQDLLELEPDERAR-AG 78 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCcceEEECCEecCCCCHHHhhc-cc
Confidence 4789999998 8999999999999999999999999999 9999972 2232 221111111111 12
Q ss_pred CeEEEccCceecceecCcchhHH-------------------Hh----------------------h----------chh
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR-------------------QK----------------------L----------GDD 104 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~-------------------~~----------------------~----------~~~ 104 (240)
.+|++|++.+++.+++.++..+. .. + ...
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 47888887666554433222110 00 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeeccC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELCG 176 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~g 176 (240)
++.+|++||||||++ +..+.++|+++++ .|.|||++|||++++ ..+ ||++++|++ ++...|
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~----------~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLL----------NYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHH----------HhhcCCeEEEEeCCEEEEec
Confidence 588999999999988 4578899999876 689999999999999 888 899999998 887777
Q ss_pred Ccce
Q 026304 177 KRAF 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+++.
T Consensus 228 ~~~~ 231 (243)
T TIGR01978 228 DVEL 231 (243)
T ss_pred CHHH
Confidence 7653
No 133
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.7e-28 Score=206.30 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=121.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEee---ccc-hhcc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMI---KSS-KDTR 72 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~---~~~-~~~~ 72 (240)
+|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++... ... ....
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 68999999998 9999999999999999999999999999 9999972 233332100 000 0111
Q ss_pred cCCCeEEEccCceecceecCcchhHH-------------Hh-------h-----------------------chhhhccC
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFR-------------QK-------L-----------------------GDDAYAKL 109 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~-------------~~-------~-----------------------~~~l~~~p 109 (240)
....+|++|+..+++.+++.++..+. .. + ...++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 12358999988877776776654310 00 0 11258899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|+||||++ +..+.++|+++.+ .|.|+|++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVA----------RKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999987 4578889988876 689999999999999 889999999998 88777776544
No 134
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=207.33 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=118.5
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h----CCceEEeeccc-------
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D----NGRNIAMIKSS------- 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~----~g~~i~~~~~~------- 68 (240)
.+||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. . .|. +......
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~-i~~~g~~~~~~~~~ 80 (252)
T PRK14239 3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLL-RSINRMNDLNPEVTITGS-IVYNGHNIYSPRTD 80 (252)
T ss_pred CceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhcccccCCCCCccce-EEECCEECcCcccc
Confidence 3589999999998 8999999999999999999999999999 9999962 2 343 2211100
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------------- 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------------- 101 (240)
........+|++|+..+++ .++.++..+.. .+
T Consensus 81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 0111123589999877665 45554432210 00
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
...++.+|++||||||++ ...+.++|+++.+ +.|||++|||++++ ..+|||+++|++ ++..
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQA----------SRISDRTGFFLDGDLIE 227 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHH----------HHhCCEEEEEECCEEEE
Confidence 112588999999999988 4578888988854 58999999999999 899999999999 8887
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|+++.+
T Consensus 228 ~g~~~~~ 234 (252)
T PRK14239 228 YNDTKQM 234 (252)
T ss_pred eCCHHHH
Confidence 7776543
No 135
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=1.7e-28 Score=215.73 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=116.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP 92 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~ 92 (240)
++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...+ ...+ ...+|++|+..+++.+++.
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~-~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTI-RMLTTLLRPTSGTARVAGYDVVREP--RKVR-RSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCH--HHHH-hhcEEecCCCCCCCCCcHH
Confidence 8999999999999999999999999999 9999972 3343332211 1112 2358999998888888887
Q ss_pred cchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHHHH
Q 026304 93 ELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FEDLY 124 (240)
Q Consensus 93 ~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~i~ 124 (240)
+++.+...+ +..++.+|++||||||++ +..++
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 765542110 112589999999999988 45789
Q ss_pred HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 125 EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 125 ~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|+++++ .|.|||++||+++++ ..+||++++|++ ++...|+++.+.
T Consensus 165 ~~l~~~~~-~g~tvi~~sH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 165 DYIRALKE-EGVTILLTTHYMEEA----------DKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred HHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999986 599999999999999 899999999999 888888876653
No 136
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.95 E-value=4.9e-28 Score=208.18 Aligned_cols=163 Identities=14% Similarity=0.048 Sum_probs=117.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce-----EEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN-----IAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~-----i~~~~~~~ 69 (240)
.++|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|++ +...+...
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-NALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3489999999998 8999999999999999999999999999 9999972 23333 22221111
Q ss_pred hc--ccCCCeEEEccCc--eecceecCcchh--------------------HHHhh------------------------
Q 026304 70 DT--RYAIDSVVTHDGA--KLPCWALPELTS--------------------FRQKL------------------------ 101 (240)
Q Consensus 70 ~~--~~~~~~~v~q~~~--~~~~~~~~~~~~--------------------~~~~~------------------------ 101 (240)
.. +....+|++|+.. ++...++.++.. +...+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 10 1223589998863 233222221110 00000
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+..++.+|++||||||++ ...+.+.|++++++.|.|||++|||++++ ..+||++++|++ ++..
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~----------~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA----------RLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEEE
Confidence 122588999999999988 45788888888764589999999999999 889999999999 8888
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (258)
T PRK11701 233 SGLTDQV 239 (258)
T ss_pred eCCHHHH
Confidence 7776543
No 137
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.8e-28 Score=212.31 Aligned_cols=159 Identities=23% Similarity=0.186 Sum_probs=120.8
Q ss_pred EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--cccCCC
Q 026304 12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD--TRYAID 76 (240)
Q Consensus 12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~--~~~~~~ 76 (240)
.++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++... .+....
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 566888887 8999999999999999999999999999 9999973 33444332221111 112235
Q ss_pred eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL 114 (240)
+|++|+..+++.+++.++..+... + +..++.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999888877777666543210 0 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +..+.++|.++.++.|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA----------LRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHHH
Confidence 99988 45788999988764589999999999999 899999999998 88777776543
No 138
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=3e-28 Score=227.78 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=121.0
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|++++| ++|+||+|.+|++++|+||||||||||+ ++|+|+. ++|.++...++.. .+...
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~~ 80 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMM-KVLTGIYTRDAGSILYLGKEVTFNGPKS-SQEAG 80 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHH-HHhCC
Confidence 489999999998 8999999999999999999999999999 9999973 2333332111111 11123
Q ss_pred CeEEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p 109 (240)
.+|++|+..+++.+++.++..+. .. + +..++.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 58999987776666665443220 00 0 11258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++|||||||+ +..++++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEI----------FEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEecCcCc
Confidence 9999999988 4578899999876 689999999999999 899999999998 8877666543
No 139
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.95 E-value=5.3e-28 Score=209.11 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=115.6
Q ss_pred ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec
Q 026304 9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK 66 (240)
Q Consensus 9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~ 66 (240)
+||+++||+++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCc
Confidence 589999999866 5799999999999999999999999999 9999972 2333332111
Q ss_pred cchhcccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304 67 SSKDTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL----------------------- 101 (240)
Q Consensus 67 ~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~----------------------- 101 (240)
...+....+|++|+.. +++.+++.++..+ ...+
T Consensus 82 --~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 159 (267)
T PRK15112 82 --YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159 (267)
T ss_pred --hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence 1111223588998753 2332222211110 0000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++||||||++ +..+.++|.++.++.|.|||++||+++++ ..+||++++|++ ++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~----------~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM----------KHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEE
Confidence 112588999999999988 45788899998764589999999999999 889999999998 887
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++.+
T Consensus 230 ~~~~~~~~ 237 (267)
T PRK15112 230 ERGSTADV 237 (267)
T ss_pred ecCCHHHH
Confidence 77766543
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=5.3e-28 Score=206.63 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=117.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~ 70 (240)
||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +..... ...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~~~~~~G~-i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLL-RSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceE-EEECCEEccccccchH
Confidence 58999999998 8999999999999999999999999999 99999732 332 221110 011
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHh----------------------h-------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~ 103 (240)
......+|++|+..+++ .++.++..+... + +.
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 11223589999877666 555544322100 0 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++||||||++ +..++++|+++++ +.|||++|||++.+ ..+||++++|++ ++...|
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQA----------ARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHH----------HHhCCEEEEEECCEEEEeC
Confidence 2588999999999988 4578899998876 38999999999999 899999999999 887777
Q ss_pred Ccce
Q 026304 177 KRAF 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+++.
T Consensus 226 ~~~~ 229 (247)
T TIGR00972 226 PTEQ 229 (247)
T ss_pred CHHH
Confidence 7654
No 141
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.8e-28 Score=206.95 Aligned_cols=158 Identities=21% Similarity=0.159 Sum_probs=118.6
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
++++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...++. ..+ ...
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~~i 77 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTSGEIFIDGEDIREQDPV-ELR-RKI 77 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCeEcCcCChH-Hhh-cce
Confidence 4678888766 7899999999999999999999999999 9999972 334333222111 112 235
Q ss_pred eEEEccCceecceecCcchhHHH-------------------h--h-----------------------chhhhccCcEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ-------------------K--L-----------------------GDDAYAKLDVI 112 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~-------------------~--~-----------------------~~~l~~~p~ll 112 (240)
+|++|++.+++.+++.++..+.. . + ...++.+|++|
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 157 (242)
T cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL 157 (242)
T ss_pred EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999887777666655543210 0 0 11158999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||++ ...+.+.|++++++.|.|||++||+++++ ..+||++++|++ ++...|+++.+
T Consensus 158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA----------FRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence 9999988 45788899988764589999999999998 899999999999 88777766543
No 142
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=6.1e-28 Score=201.95 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=116.2
Q ss_pred EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
++++|++++| +.++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+ . .....+|+
T Consensus 1 ~~~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~---~-~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLL-NLIAGFIEPASGSIKVNDQSHTGLA---P-YQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccCC---h-hccceEEE
Confidence 4689999999 7899999999999999999999999999 9999972 2333332111 1 12235899
Q ss_pred EccCceecceecCcchhHHH------------hh------------------------------chhhhccCcEEEEcCc
Q 026304 80 THDGAKLPCWALPELTSFRQ------------KL------------------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~~------------~~------------------------------~~~l~~~p~lllLDEP 117 (240)
+|++.+++.+++.++..+.. .. +..++.+|++++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99988777667665543210 00 1125889999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
++ +..+.++|+++.++.+.|||++||+++++ ..+||++++|++ ++...|
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~----------~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA----------RAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HhhcCeEEEEECCeEEEec
Confidence 88 45788999998764589999999999999 889999999988 776554
No 143
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.6e-28 Score=207.90 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=119.3
Q ss_pred CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc------
Q 026304 6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS------ 67 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~------ 67 (240)
+..+||+++|+++.| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +.....
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G~-i~~~g~~~~~~~ 85 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTGE-MNYNGSNILKGK 85 (259)
T ss_pred cCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceE-EEECCEEccccc
Confidence 345689999999998 8999999999999999999999999999 99999642 232 211110
Q ss_pred -chhcccCCCeEEEccCceecceecCcchhHH--------------------Hhh-------------------------
Q 026304 68 -SKDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL------------------------- 101 (240)
Q Consensus 68 -~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~------------------------- 101 (240)
.........+|++|+..+++. ++.++..+. ..+
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 011112235899998766553 443332110 000
Q ss_pred --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
...++.+|++|+||||++ +..+.+.|+++.+ +.|||++|||++.+ ..+|||+++|++ ++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~G~i 232 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQA----------ARVSDQTAFFYMGEL 232 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHH----------HHhCCEEEEEECCEE
Confidence 112588999999999988 4578888988854 68999999999999 899999999999 88
Q ss_pred eccCCccee
Q 026304 173 ELCGKRAFF 181 (240)
Q Consensus 173 ~~~g~~~~~ 181 (240)
...|+++.+
T Consensus 233 ~~~g~~~~~ 241 (259)
T PRK14274 233 VECNDTNKM 241 (259)
T ss_pred EEECCHHHH
Confidence 888887654
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.7e-28 Score=206.78 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=117.6
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h----CCc------eEEeeccchh
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D----NGR------NIAMIKSSKD 70 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~----~g~------~i~~~~~~~~ 70 (240)
+||+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. . .|. ++...+....
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 589999999998 8999999999999999999999999999 9998851 1 232 2221110011
Q ss_pred cccCCCeEEEccCceecceecCcchhHH--------------------Hhh---------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL---------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~---------------------------~~ 103 (240)
......+|++|+..+++ .++.++..+. ..+ ..
T Consensus 81 ~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 11223589999876654 3444333210 000 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++||||||++ +..+.++|+++. .+.|||++|||++++ ..+|||+++|++ ++...|
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~----------~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNMQQA----------ARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEEEC
Confidence 1588999999999988 457889999884 378999999999999 899999999999 888888
Q ss_pred Cccee
Q 026304 177 KRAFF 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
+++.+
T Consensus 228 ~~~~~ 232 (250)
T PRK14245 228 DTKKI 232 (250)
T ss_pred CHHHH
Confidence 87654
No 145
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.5e-28 Score=211.66 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=119.3
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeecc--ch
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKS--SK 69 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~--~~ 69 (240)
+|+++|+++.| ++|+||++++||+++|+||||||||||+ ++|+|+ .++|+++..... ..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLM-QHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 58899999877 7899999999999999999999999999 999997 234544432110 01
Q ss_pred hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304 70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~ 104 (240)
.......+|++|++ .++ ..++.+++.+... + +..
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 11122358999985 333 3455554432110 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..+.++|+++.+ .|.|||++|||++++ ..+||++++|++ ++...|+
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~----------~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDV----------AEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence 589999999999988 4578899999876 699999999999999 899999999999 8888888
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 229 ~~~~ 232 (287)
T PRK13641 229 PKEI 232 (287)
T ss_pred HHHH
Confidence 7653
No 146
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-28 Score=209.74 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=118.4
Q ss_pred CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304 7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT 71 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~ 71 (240)
.+++|+++|++++| ++|+||+|++||+++|+||||||||||+ ++|+|+. ++|.++...+. ...
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 81 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIA-KLMIGIEKVKSGEIFYNNQAITDDNF-EKL 81 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCH-HHH
Confidence 46689999999988 7899999999999999999999999999 9999972 23333321111 111
Q ss_pred ccCCCeEEEccCc-eecceecCcchhHH-------------------Hhh-----------------------chhhhcc
Q 026304 72 RYAIDSVVTHDGA-KLPCWALPELTSFR-------------------QKL-----------------------GDDAYAK 108 (240)
Q Consensus 72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~ 108 (240)
+ ...+|++|++. .++..++.++..+. ..+ ...++.+
T Consensus 82 ~-~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 82 R-KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred H-hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2 23589999863 34433433222110 000 1125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++||||||++ ...+++.|+++.++.|.|||++||+++++ .. |||+++|++ ++...|+++.+
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~----------~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA----------ME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH----------hc-CCEEEEEECCEEEEecCHHHH
Confidence 99999999988 45788899888764589999999999998 65 999999999 88888887654
No 147
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=8.7e-28 Score=202.27 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=117.2
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccch-hcccCCCeEEEcc
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSK-DTRYAIDSVVTHD 82 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~-~~~~~~~~~v~q~ 82 (240)
|+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+. ..|. +....... .......+|++|+
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~~~~~~~~~~~~~~~~~q~ 78 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLL-KMITGILRPTSGE-IIFDGHPWTRKDLHKIGSLIES 78 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEECCEeccccccccEEEEcCC
Confidence 4688999987 9999999999999999999999999999 9999972 2232 21111000 0111235788988
Q ss_pred CceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC-----
Q 026304 83 GAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~----- 119 (240)
..+++..++.++..+... + ...++.+|++|+||||++
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~ 158 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence 777776666655433111 0 112588999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
+..+.++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|++.
T Consensus 159 ~~~~l~~~L~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 159 GIQELRELIRSFPE-QGITVILSSHILSEV----------QQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HHhcCEEEEEeCCEEEEecChh
Confidence 4578899999876 689999999999999 899999999998 877777653
No 148
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.3e-28 Score=205.91 Aligned_cols=158 Identities=15% Similarity=0.071 Sum_probs=118.1
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~ 69 (240)
++|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +..... ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEGN-VIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCcCCCCceE-EEECCEecccccccH
Confidence 489999999998 8999999999999999999999999999 99999742 332 221110 01
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~ 102 (240)
.......+|++|+..++. .++.+++.+.. . + +
T Consensus 84 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 111223589999876653 45544332210 0 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ ...++++|+++++ +.|||++|||++++ ..+|||+++|++ ++...
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQQA----------GRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12588999999999988 4578899999853 68999999999999 899999999999 88877
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|++..+
T Consensus 231 g~~~~~ 236 (254)
T PRK14273 231 SSTDEL 236 (254)
T ss_pred CCHHHH
Confidence 876543
No 149
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.4e-28 Score=194.77 Aligned_cols=167 Identities=23% Similarity=0.185 Sum_probs=130.9
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
+++.++++|.+| ++|+|++|.+||+++++||||||||||| ++++|+. ++|+.+..- -
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLL-nl~AGf~~P~~G~i~l~~r~i~gP-------g 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLL-NLIAGFVTPSRGSIQLNGRRIEGP-------G 73 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHH-HHHhcCcCcccceEEECCEeccCC-------C
Confidence 478889999998 8999999999999999999999999999 9999982 233333211 1
Q ss_pred CCCeEEEccCceecceecCcchhHHHhhc------------------------------------------hhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~p~l 111 (240)
...++|||+..++|.+++.+|..+..++. ..++-+|++
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 12489999999999999999988754431 125889999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCcceee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFFT 182 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~~ 182 (240)
|+||||.. ++++.++|.++.++.|+.++++|||++++ .-+|+|+++|.. +++..-+++ |.
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA----------lflatrLvvlsp~pgRvv~~~~~d-f~ 222 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA----------LFLATRLVVLSPGPGRVVERLPLD-FA 222 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH----------HhhhheeEEecCCCceeeEecCCC-HH
Confidence 99999966 45788888888887899999999999999 999999999985 555443433 55
Q ss_pred eeecCCCcEEEe
Q 026304 183 LRKTEETETEII 194 (240)
Q Consensus 183 ~~~~~~~~~~~~ 194 (240)
.|+..+.+..-+
T Consensus 223 rR~aage~~RaI 234 (259)
T COG4525 223 RRYAAGEPSRAI 234 (259)
T ss_pred HHhhcCCCcchh
Confidence 566555444433
No 150
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=207.21 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=117.2
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~~ 69 (240)
.++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. ++...+...
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4589999999998 8999999999999999999999999999 9999963 1232 221111111
Q ss_pred hcccCCCeEEEccCceecceecCcchhHH--------------------H----------hh-----------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------Q----------KL-----------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~----------~~-----------------~ 102 (240)
.......+|++|+..+++. ++.++..+. . .. .
T Consensus 98 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 1112235899998766653 443332210 0 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+|||+++|++ ++...
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQA----------LRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12588999999999988 4578889988854 58999999999999 899999999999 88887
Q ss_pred CCcce
Q 026304 176 GKRAF 180 (240)
Q Consensus 176 g~~~~ 180 (240)
|+++.
T Consensus 245 ~~~~~ 249 (268)
T PRK14248 245 DQTEQ 249 (268)
T ss_pred CCHHH
Confidence 77654
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=205.15 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=119.4
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~ 69 (240)
++|+++|+++.| ++|+||++.+||+++|+||||||||||+ ++|+|+.. .|. +..... ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDP 80 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceE-EEECCEEccccccCh
Confidence 379999999998 9999999999999999999999999999 99999732 342 211100 00
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH---------------------hh---------------------------
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ---------------------KL--------------------------- 101 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~--------------------------- 101 (240)
.......+|++|+..+++..++.++..+.. .+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 111123589999887776666554443210 00
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
...++.+|++|+||||++ ...+.+.|+++++ +.|||++|||++++ ..+||++++|++ ++..
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQA----------ARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHH----------HhhCCEEEEEECCEEEE
Confidence 111588999999999987 4578889988864 58999999999999 899999999999 8887
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|+++++
T Consensus 229 ~~~~~~~ 235 (253)
T PRK14267 229 VGPTRKV 235 (253)
T ss_pred eCCHHHH
Confidence 7776543
No 152
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=7.2e-28 Score=216.12 Aligned_cols=154 Identities=17% Similarity=0.117 Sum_probs=119.0
Q ss_pred ceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--chhcccCCCeEEE
Q 026304 15 QVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SKDTRYAIDSVVT 80 (240)
Q Consensus 15 ~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~~~~~~~~~~v~ 80 (240)
|++++| + ++||++++|++++|+||||||||||| ++|+|+. ++|+++..... .........+|++
T Consensus 4 ~l~~~~~~~~~-~isl~i~~Gei~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL-DADFTLPGQGVTAIFGRSGSGKTTLI-RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE-EEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 678887 6 99999999999999999999999999 9999972 34444322111 0011122358999
Q ss_pred ccCceecceecCcchhHHHh----------h------------------------------chhhhccCcEEEEcCccC-
Q 026304 81 HDGAKLPCWALPELTSFRQK----------L------------------------------GDDAYAKLDVIGIDEAQF- 119 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~~~~----------~------------------------------~~~l~~~p~lllLDEP~~- 119 (240)
|+..+++.+++.++..+... . +..++.+|++||||||++
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~ 161 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99988888888776654210 0 112588999999999988
Q ss_pred -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+..+++.|++++++.|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV----------LRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEEECCHHH
Confidence 45789999998764589999999999999 899999999999 8888887654
No 153
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=1.2e-27 Score=199.98 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=107.8
Q ss_pred EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCc
Q 026304 12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGA 84 (240)
Q Consensus 12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~ 84 (240)
+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +..............+|++|+..
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLL-KAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCE-EEECCccHHHHHhheEEeccccc
Confidence 367888887 8999999999999999999999999999 9999973 2332 22211111011123578888765
Q ss_pred eec--ceecCcchhHH-----------------------Hhh-----------------------chhhhccCcEEEEcC
Q 026304 85 KLP--CWALPELTSFR-----------------------QKL-----------------------GDDAYAKLDVIGIDE 116 (240)
Q Consensus 85 ~~~--~~~~~~~~~~~-----------------------~~~-----------------------~~~l~~~p~lllLDE 116 (240)
+.. ..++.++..+. ..+ ...++.+|++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 421 13443332110 000 112588999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeecc
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELC 175 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~ 175 (240)
|++ +..+.+.|+++++ .|.|||++|||++++ ..+||++++|++.+.+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~~~~~~ 212 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLV----------LEYFDRVLLLNRTVVAS 212 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEcCcEeec
Confidence 988 4578899999887 689999999999999 89999999998754433
No 154
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=7.1e-28 Score=200.33 Aligned_cols=147 Identities=22% Similarity=0.168 Sum_probs=105.8
Q ss_pred EcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccc--hhcccCCCeEEEcc
Q 026304 13 TNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSS--KDTRYAIDSVVTHD 82 (240)
Q Consensus 13 ~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~--~~~~~~~~~~v~q~ 82 (240)
++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ..|. +...... ...+....+|++|+
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLA-KILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEecC
Confidence 56777766 7899999999999999999999999999 9999972 2232 2111100 01112235899998
Q ss_pred Cc-eecceecCcchhHHH--------h-------h-----------------------chhhhccCcEEEEcCccC----
Q 026304 83 GA-KLPCWALPELTSFRQ--------K-------L-----------------------GDDAYAKLDVIGIDEAQF---- 119 (240)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~--------~-------~-----------------------~~~l~~~p~lllLDEP~~---- 119 (240)
+. .+...++.++..+.. . + ...++.+|++|+||||++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 53 222345554443211 0 0 112588999999999988
Q ss_pred --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
+..+.++|+++++ .|.|||++|||++++ ..+||++++|++ ++
T Consensus 160 ~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i 204 (205)
T cd03226 160 KNMERVGELIRELAA-QGKAVIVITHDYEFL----------AKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEE
Confidence 4578899999876 689999999999999 889999999987 54
No 155
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.3e-28 Score=197.55 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=133.3
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCC-ceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNG-RNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g-~~i~~~~~~~~~~~~ 74 (240)
..|+++|+|++| ++++||++.+||.-+|+|||||||||++ ..|+|. .++| .++..++.....|.+
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~m-D~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM-DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeee-eeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 579999999998 9999999999999999999999999999 999996 3455 667666665556665
Q ss_pred CCeEEEccCceecceecCcchhHHHhh------------------------------------c-----h---------h
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------G-----D---------D 104 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------~-----~---------~ 104 (240)
+ |-.||.+..|+.+++++|+++.... + + .
T Consensus 83 I-GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 83 I-GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred c-CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 3 6789999999999999998775321 0 0 0
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++++|++|++|||.+ ....-++|+.++. +.+|+++.|||.|+ ..+|++|-+|+. .+...|+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fv----------r~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFV----------REIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHH----------HHhhheeEEEeccceeeccc
Confidence 389999999999977 2367888999875 67999999999999 999999999999 8888888
Q ss_pred cceee
Q 026304 178 RAFFT 182 (240)
Q Consensus 178 ~~~~~ 182 (240)
.+.+.
T Consensus 230 ld~v~ 234 (249)
T COG4674 230 LDEVQ 234 (249)
T ss_pred HHHhh
Confidence 76544
No 156
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=206.12 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=118.0
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc------
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS------ 68 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~------ 68 (240)
...+|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +......
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G~-i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEGE-ILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcceE-EEECCEEcccccc
Confidence 34589999999998 8999999999999999999999999999 9999974 1342 2211100
Q ss_pred -hhcccCCCeEEEccCceecceecCcchhHH--------------------Hhh--------------------------
Q 026304 69 -KDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL-------------------------- 101 (240)
Q Consensus 69 -~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~-------------------------- 101 (240)
........+|++|+..+++ .++.++..+. ..+
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 0111223589999876665 4544333210 000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++||||||++ ...+.+.|+++.+ +.|||++||+++.+ ..+||++++|++ ++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNMQQA----------ARCSDYTAFMYLGELI 234 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEE
Confidence 112589999999999988 4578888888853 68999999999999 899999999999 887
Q ss_pred ccCCcce
Q 026304 174 LCGKRAF 180 (240)
Q Consensus 174 ~~g~~~~ 180 (240)
..|+++.
T Consensus 235 ~~g~~~~ 241 (260)
T PRK10744 235 EFGNTDT 241 (260)
T ss_pred EeCCHHH
Confidence 7777654
No 157
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.4e-27 Score=202.31 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=119.4
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+. .+ ...+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~g~~~~~~G~i~~~g~~~~~~~~---~~-~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLL-RLIAGFETPTSGEILLDGKDITNLPP---HK-RPVN 75 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCh---hh-cceE
Confidence 4688999988 8999999999999999999999999999 9999972 23333221111 12 2358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..++..+++.++..+... + +..++.+|++++||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999888776677665543110 0 11258999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||++ +..+.++|++++++.|.|||++||+++++ ..+||++++|++ ++...|++..
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~----------~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA----------LTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEecCCHHH
Confidence 9988 45788999998764589999999999999 899999999998 8777776543
No 158
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=1.1e-27 Score=194.45 Aligned_cols=144 Identities=20% Similarity=0.170 Sum_probs=110.5
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
++++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++...+.. . ....
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~ 77 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLA-RLILGLLRPTSGRVRLDGADISQWDPN-E-LGDH 77 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEEcccCCHH-H-HHhh
Confidence 4678888877 7899999999999999999999999999 9999972 334443322211 1 1223
Q ss_pred CeEEEccCceecceecCcch-----hHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 76 DSVVTHDGAKLPCWALPELT-----SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
.+|++|+..+++. ++.++. .....+...++.+|++||||||++ +..+.++|+++++ +|.|||++|||
T Consensus 78 i~~~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~ 155 (173)
T cd03246 78 VGYLPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHR 155 (173)
T ss_pred eEEECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 5899998877764 666653 111223556799999999999988 4578899998876 68999999999
Q ss_pred hhhhhcccchHHHHHhhccceeeecc
Q 026304 145 GDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 145 ~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++ .+||++++|++
T Consensus 156 ~~~~-----------~~~d~v~~l~~ 170 (173)
T cd03246 156 PETL-----------ASADRILVLED 170 (173)
T ss_pred HHHH-----------HhCCEEEEEEC
Confidence 9877 47999999976
No 159
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.9e-28 Score=209.62 Aligned_cols=162 Identities=15% Similarity=0.050 Sum_probs=120.8
Q ss_pred CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C---CceEEeeccc-----h
Q 026304 7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N---GRNIAMIKSS-----K 69 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~---g~~i~~~~~~-----~ 69 (240)
++.||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. . |. +...... .
T Consensus 2 ~~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl-~~l~G~~~p~~g~~G~-i~i~g~~~~~~~~ 79 (282)
T PRK13640 2 KDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTIS-KLINGLLLPDDNPNSK-ITVDGITLTAKTV 79 (282)
T ss_pred CCceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCCCCCcE-EEECCEECCcCCH
Confidence 45689999999987 8899999999999999999999999999 99999732 2 32 2211111 1
Q ss_pred hcccCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhh
Q 026304 70 DTRYAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAY 106 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~ 106 (240)
.......+|++|++. .+...++.+++.+... + +..++
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 111223589999863 4445566555432110 0 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++||||||++ +..+.++|++++++.|.|||++||+++++ . +||++++|++ ++...|+++
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA----------N-MADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEeCCHH
Confidence 9999999999988 45788999988764589999999999988 5 7999999999 888888876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
.+
T Consensus 229 ~~ 230 (282)
T PRK13640 229 EI 230 (282)
T ss_pred HH
Confidence 53
No 160
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.95 E-value=1.5e-27 Score=201.35 Aligned_cols=154 Identities=18% Similarity=0.091 Sum_probs=113.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.++|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++...++. ..+ .
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~ 81 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDISTLKPE-IYR-Q 81 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEcCcCCHH-HHH-h
Confidence 3589999999998 8999999999999999999999999999 9999972 233333222111 112 2
Q ss_pred CCeEEEccCceecceecCcchhHHH-----------------hh------------------------chhhhccCcEEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-----------------KL------------------------GDDAYAKLDVIG 113 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-----------------~~------------------------~~~l~~~p~lll 113 (240)
..+|++|+..+++. ++.++..+.. .+ +..++.+|++|+
T Consensus 82 ~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 82 QVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred ccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35899998776653 5555443210 00 112589999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccC
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCG 176 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g 176 (240)
||||++ +..+.++|.++.++.|.|||++|||++++ . .||++++|++ ..+.+|
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~----------~-~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI----------N-HADKVITLQPHAGEMQEA 220 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH----------H-hCCEEEEEecccchHhhh
Confidence 999987 45788889888764589999999999998 5 6999999963 444444
No 161
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=204.04 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=118.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~ 70 (240)
.|+++|++++| ++|+||+|++||+++|+||||||||||+ ++|+|+.. .|. +..... ...
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTGK-ILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCceE-EEECCEEcccccCChH
Confidence 68999999998 9999999999999999999999999999 99999742 232 222111 111
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~ 103 (240)
......+|++|+..+++..++.++..+.. .+ +.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 11223589999877776656554432210 00 01
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++||||||++ +..+.+.|+++.+ +.|||++|||++++ ..+||++++|++ ++...|
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQA----------ARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHH----------HhhCCEEEEEECCEEEEeC
Confidence 1488999999999987 4578889998864 58999999999999 899999999998 888777
Q ss_pred Ccce
Q 026304 177 KRAF 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+++.
T Consensus 230 ~~~~ 233 (252)
T PRK14256 230 ETKK 233 (252)
T ss_pred CHHH
Confidence 7654
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=1.2e-27 Score=205.48 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=117.9
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++...+.. .+....+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLL-RLLAGALRPDAGTVDLAGVDLHGLSRR--ARARRVA 78 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEEcccCCHH--HHhhheE
Confidence 5789999988 9999999999999999999999999999 9999972 234433322211 1112357
Q ss_pred EEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccCcE
Q 026304 78 VVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKLDV 111 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p~l 111 (240)
|++|+...+...++.++..+. .. + ...++.+|++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 888886554444544443221 00 0 1125889999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++||||++ ...+.++|+++.+ +|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLA----------ASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999988 4578899999876 689999999999999 899999999998 88777776543
No 163
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=203.52 Aligned_cols=157 Identities=15% Similarity=0.058 Sum_probs=118.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-----chhcc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-----SKDTR 72 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-----~~~~~ 72 (240)
+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.- .|. +..... ....+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLL-RVFNRLIELYPEARVSGE-VYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCceE-EEECCEECCcCCHHHH
Confidence 69999999998 8999999999999999999999999999 99999742 332 221110 00111
Q ss_pred cCCCeEEEccCceecceecCcchhHHH---------------------hh---------------------------chh
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQ---------------------KL---------------------------GDD 104 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~---------------------------~~~ 104 (240)
....+|++|+..+++..++.++..+.. .+ ...
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 223589999877666666655543210 00 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|+||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++...|+
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQA----------ARISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCEEEEEECCeEEEECC
Confidence 588999999999988 4578888888853 78999999999999 899999999998 8877777
Q ss_pred cce
Q 026304 178 RAF 180 (240)
Q Consensus 178 ~~~ 180 (240)
++.
T Consensus 229 ~~~ 231 (250)
T PRK14247 229 TRE 231 (250)
T ss_pred HHH
Confidence 654
No 164
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=2.3e-27 Score=203.24 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=116.1
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce-----EEeeccchh
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN-----IAMIKSSKD 70 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~-----i~~~~~~~~ 70 (240)
++|+++|+++.| ++|+||+|++|++++|+||||||||||+ ++|+|+. ++|++ +...+....
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLL-GCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 479999999998 8999999999999999999999999999 9999972 22322 221111111
Q ss_pred c--ccCCCeEEEccCce--ecceecCcchh--------------------HHHhh------------------------c
Q 026304 71 T--RYAIDSVVTHDGAK--LPCWALPELTS--------------------FRQKL------------------------G 102 (240)
Q Consensus 71 ~--~~~~~~~v~q~~~~--~~~~~~~~~~~--------------------~~~~~------------------------~ 102 (240)
. +....+|++|++.. +...++.++.. +...+ +
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 1 11235889987632 22222211110 00000 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ ...+.++|+++.++.|.|||++||+++++ ..+||++++|++ ++...
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~----------~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA----------RLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEE
Confidence 22589999999999988 45788889888764589999999999999 889999999999 88877
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 231 ~~~~~~ 236 (253)
T TIGR02323 231 GLTDQV 236 (253)
T ss_pred CCHHHH
Confidence 776543
No 165
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=3.6e-28 Score=205.21 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=119.6
Q ss_pred ceEEEcceeEee--------------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCc
Q 026304 9 AAVTTNQVNSGR--------------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGR 60 (240)
Q Consensus 9 ~~l~~~~ls~~~--------------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~ 60 (240)
.|+.++|+++.| ++|+||+|++|++++++|||||||||+| |+++|+.. .|+
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtL-KmLTGll~p~~G~ 80 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTL-KMLTGLLLPTSGK 80 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhH-HHHhCccccCCCe
Confidence 367888888877 4799999999999999999999999999 99999732 232
Q ss_pred -eEEeeccchhcc--cCCCeEEE-ccCceecceecCcchhHH------------H-------------------------
Q 026304 61 -NIAMIKSSKDTR--YAIDSVVT-HDGAKLPCWALPELTSFR------------Q------------------------- 99 (240)
Q Consensus 61 -~i~~~~~~~~~~--~~~~~~v~-q~~~~~~~~~~~~~~~~~------------~------------------------- 99 (240)
.+....|..+.+ .+..++|+ |...+..++.+.+..... .
T Consensus 81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlG 160 (325)
T COG4586 81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG 160 (325)
T ss_pred EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccch
Confidence 222222221111 01112322 333333332222211110 0
Q ss_pred -----hhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 100 -----KLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 100 -----~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
.+...++++|++|+|||||- +..+.+++++..++++.||+.+||+++.+ ..+||||++|
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di----------~~lc~rv~~I 230 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI----------ATLCDRVLLI 230 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH----------HHhhhheEEe
Confidence 01122689999999999987 56899999999988999999999999999 9999999999
Q ss_pred cc-eeeccCCcceeeeeecCC
Q 026304 169 TA-RCELCGKRAFFTLRKTEE 188 (240)
Q Consensus 169 ~~-~~~~~g~~~~~~~~~~~~ 188 (240)
+. +++++|+-+.+..++...
T Consensus 231 ~~Gqlv~dg~l~~l~~~f~~~ 251 (325)
T COG4586 231 DQGQLVFDGTLAQLQEQFGPY 251 (325)
T ss_pred eCCcEeecccHHHHHHHhCCc
Confidence 99 999999887776666443
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=207.71 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=117.1
Q ss_pred ceEEEcceeEee-----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch
Q 026304 9 AAVTTNQVNSGR-----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~ 69 (240)
+||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++.......
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIA-KHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeccccccHH
Confidence 489999999887 6799999999999999999999999999 9999972 3444332211111
Q ss_pred hcccCCCeEEEccCc--eecceecCcchhHHH-------------------hh-----------------------chhh
Q 026304 70 DTRYAIDSVVTHDGA--KLPCWALPELTSFRQ-------------------KL-----------------------GDDA 105 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l 105 (240)
..+ ...+|++|++. ++. .++.++..+.. .+ +..+
T Consensus 82 ~~~-~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 82 DIR-NKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HHh-hheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112 23589999863 332 23333322210 00 1225
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++||||||++ +..+.+.|++++++.|.|||++|||++++ .. ||++++|++ ++...|++
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~----------~~-~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA----------VE-ADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH----------hc-CCEEEEEECCEEEEecCH
Confidence 89999999999988 45788999998764599999999999998 65 999999999 88888887
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+.+
T Consensus 229 ~~~ 231 (280)
T PRK13633 229 KEI 231 (280)
T ss_pred HHH
Confidence 654
No 167
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=202.59 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=117.0
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~ 69 (240)
.+||+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+.. .|. ++...+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3589999999998 9999999999999999999999999999 99999631 232 221100001
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH-------------h-----------------h-----------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-----------------L-----------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-----------------~-----------------~ 102 (240)
.......+|++|+..+++ .++.++..+.. . . .
T Consensus 82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 111223589999876665 34443332110 0 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++...
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQA----------SRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12588999999999988 4578888988865 48999999999999 899999999999 88777
Q ss_pred CCcce
Q 026304 176 GKRAF 180 (240)
Q Consensus 176 g~~~~ 180 (240)
|++..
T Consensus 229 ~~~~~ 233 (252)
T PRK14255 229 ADTKQ 233 (252)
T ss_pred CCHHH
Confidence 76644
No 168
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=2.9e-27 Score=198.09 Aligned_cols=147 Identities=17% Similarity=0.090 Sum_probs=112.6
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
.+++|+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++.. . .+.
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~i~~---~--~~~ 81 (214)
T PRK13543 8 APPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLL-RVLAGLLHVESGQIQIDGKTATR---G--DRS 81 (214)
T ss_pred CcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCeeEEECCEEccc---h--hhh
Confidence 34689999999998 8999999999999999999999999999 9999972 23333221 0 111
Q ss_pred CCCeEEEccCceecceecCcchhHHHh----------------h-----------------------chhhhccCcEEEE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK----------------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------~-----------------------~~~l~~~p~lllL 114 (240)
...+|++|...+++..++.++..+... + ...++.+|++|+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 234788888776666566554432110 0 1125889999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|||++ ...+.++++++.+ .|.|||++|||++++ ..+||+++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~~~i~~l~~ 212 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAA----------PPVRTRMLTLEA 212 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhh----------hhhcceEEEEee
Confidence 99988 4578888888876 689999999999999 999999998863
No 169
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=205.91 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=110.4
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS------- 67 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~------- 67 (240)
.+++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +.....
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~-v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKGR-VLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceE-EEECCEEcccccC
Confidence 34689999999998 9999999999999999999999999999 9999973 2232 221110
Q ss_pred chhcccCCCeEEEccCceecceecCcchhHH------------------Hhh---------------------------c
Q 026304 68 SKDTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QKL---------------------------G 102 (240)
Q Consensus 68 ~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~~---------------------------~ 102 (240)
.........+|++|+..+++. ++.+++.+. ..+ +
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 001111235899998776653 444333210 000 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
..++.+|++||||||++ +..+.++|+++++ +.|||++|||++++ ..+||++++|++
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQQA----------VRVSDMTAFFNA 228 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCEEEEEec
Confidence 12588999999999988 4578888988853 68999999999999 999999999985
No 170
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=205.88 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=117.1
Q ss_pred CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeec-------
Q 026304 6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIK------- 66 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~------- 66 (240)
..++||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ..|. +....
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~l~~~~ 93 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEGR-LLYRDRNIYDSQ 93 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhcccccccCCCcCce-EEECCEeccccc
Confidence 345699999999998 8999999999999999999999999999 9999973 1343 22111
Q ss_pred cchhcccCCCeEEEccCceecceecCcchhHHH------------------h---------------------------h
Q 026304 67 SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------K---------------------------L 101 (240)
Q Consensus 67 ~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~---------------------------~ 101 (240)
..........+|++|+..+++. ++.+++.+.. . +
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 0111112235899998766543 4443332100 0 0
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------ 169 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------ 169 (240)
...++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|+
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~~~~~~ 240 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQA----------SRVADWTAFFNTEIDEY 240 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEecccccc
Confidence 112589999999999988 4578889988864 58999999999999 99999999997
Q ss_pred ---c-eeeccCCcce
Q 026304 170 ---A-RCELCGKRAF 180 (240)
Q Consensus 170 ---~-~~~~~g~~~~ 180 (240)
+ +++..|+++.
T Consensus 241 ~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 241 GKRRGKLVEFSPTEQ 255 (274)
T ss_pred cccCceEEEeCCHHH
Confidence 4 6666666654
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=1.6e-27 Score=198.92 Aligned_cols=144 Identities=22% Similarity=0.245 Sum_probs=105.5
Q ss_pred EcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 13 TNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 13 ~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+. ...+ ...+
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~-~~i~ 78 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLL-RLLNGLLGPTSGEVLVDGKDLTKLSL-KELR-RKVG 78 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEcccCCH-HHHH-hhce
Confidence 46676655 8899999999999999999999999999 9999972 23333322111 1112 2358
Q ss_pred EEEccCc-eecceecCcchhHHH-------------------hh-----------------------chhhhccCcEEEE
Q 026304 78 VVTHDGA-KLPCWALPELTSFRQ-------------------KL-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 78 ~v~q~~~-~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l~~~p~lllL 114 (240)
|++|+.. .++..++.++..+.. .+ ...++.+|++|+|
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999863 244455554433210 00 1125889999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|||++ +..+.+.|+++++ +|.|||++|||++++ ..+||++++|++
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~ 209 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLL----------LELADRVIVLED 209 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 99988 4578899999887 589999999999999 889999999874
No 172
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=202.43 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=119.0
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc-------h
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS-------K 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~-------~ 69 (240)
.+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. .|. +...... .
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCcee-EEECCEEcccCccCH
Confidence 379999999998 9999999999999999999999999999 99999731 242 2111100 0
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~ 102 (240)
.......+|++|+..+++..++.++..+.. .+ +
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 111223589999877776655544332110 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++|+||||++ +..+.+.|+++++ +.|||++||+++++ ..+|||+++|++ ++...
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQA----------ARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12589999999999988 4578888888853 68999999999999 889999999999 88888
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 229 ~~~~~~ 234 (252)
T PRK14272 229 GPTDQL 234 (252)
T ss_pred CCHHHH
Confidence 876543
No 173
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=3.6e-27 Score=194.79 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=116.6
Q ss_pred eEEEcceeEee-----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h--CCceEEeeccc--hhcc
Q 026304 10 AVTTNQVNSGR-----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D--NGRNIAMIKSS--KDTR 72 (240)
Q Consensus 10 ~l~~~~ls~~~-----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~--~g~~i~~~~~~--~~~~ 72 (240)
.|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. . .|. +...... ....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl-~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLL-NALAGRRTGLGVSGE-VLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCceE-EEECCEeCchHhh
Confidence 47889998876 5699999999999999999999999999 9999975 2 232 2211111 0111
Q ss_pred cCCCeEEEccCceecceecCcchhHHHh-------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQK-------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH 133 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~ 133 (240)
....+|++|+..+++.+++.++..+... +...++.+|++|+||||++ +..+.++|+++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~- 159 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD- 159 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence 1235889999888887888877655322 1334789999999999987 4578899998876
Q ss_pred CCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeec
Q 026304 134 DGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 134 ~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+|.|+|++|||++ .+ ..+||++++|++ ++..
T Consensus 160 ~~~tiii~sh~~~~~~----------~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 160 TGRTIICSIHQPSSEI----------FELFDKLLLLSQGRVIY 192 (194)
T ss_pred CCCEEEEEecCchHHH----------HHhcCEEEEEeCCEEEe
Confidence 5999999999996 67 789999999998 6654
No 174
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=206.04 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=119.4
Q ss_pred CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304 7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT 71 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~ 71 (240)
+.+|++++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+. ...
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~ 81 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTIS-KILTGLLKPQSGEIKIDGITISKENL-KEI 81 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEecCcCCH-HHH
Confidence 45699999999987 8999999999999999999999999999 9999972 23333322111 111
Q ss_pred ccCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhcc
Q 026304 72 RYAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAK 108 (240)
Q Consensus 72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~ 108 (240)
+ ...+|++|++. .+..+++.++..+... + ...++.+
T Consensus 82 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 82 R-KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred h-cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2 23589999863 4545566655433110 0 1125889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++||||||++ ...++++|++++++.+.|||++||+++++ . .||++++|++ ++...|++..
T Consensus 161 p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 161 PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA----------I-LADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH----------h-hCCEEEEEECCEEEEecCHHH
Confidence 99999999987 45788999998763358999999999988 5 7999999999 8877776654
No 175
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2e-27 Score=206.79 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=116.9
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--ch
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SK 69 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~ 69 (240)
.|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...++ ..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIM-QLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccCH
Confidence 38899999887 5899999999999999999999999999 9999972 34444432211 00
Q ss_pred hcccCCCeEEEccC--ceecceecCcchhHHH-------------------hh------------------------chh
Q 026304 70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ-------------------KL------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~-------------------~~------------------------~~~ 104 (240)
.......+|++|+. .+++ .++.++..+.. .+ ...
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 159 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 11112358999975 3333 34444332210 00 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..+.+.|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDV----------ANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence 589999999999988 4578899998876 589999999999999 899999999999 8877777
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 229 ~~~~ 232 (280)
T PRK13649 229 PKDI 232 (280)
T ss_pred HHHH
Confidence 6543
No 176
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-27 Score=202.41 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=117.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------chh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS-------SKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~-------~~~ 70 (240)
||+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ..|. +..... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~-i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceE-EEECCEEcccchhhHH
Confidence 79999999998 8999999999999999999999999999 9999973 2232 221110 001
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------hch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------LGD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~~~ 103 (240)
......+|++|++.+++ .++.++..+.. . +..
T Consensus 81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 11223589999877665 45544332210 0 011
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++|+||||++ +..+.++|+++.+ +.|||++|||++.+ ..+||++++|++ ++...|
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~----------~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQA----------IRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEec
Confidence 2588999999999988 4578889988864 68999999999998 899999999999 888777
Q ss_pred Cccee
Q 026304 177 KRAFF 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
+++.+
T Consensus 228 ~~~~~ 232 (250)
T PRK14262 228 PTREI 232 (250)
T ss_pred CHHHH
Confidence 76543
No 177
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-27 Score=204.24 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=124.2
Q ss_pred CcCCCCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C------Cce------
Q 026304 1 MAASNLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N------GRN------ 61 (240)
Q Consensus 1 m~~~~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~------g~~------ 61 (240)
|.+.+...++|++++++++| ++|+||++.+||+++|+||||||||||+ ++|+|+.. . |..
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~iaG~~~~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLL-KVLNRLIEIYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred CCCchhhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCcCceeEcCEEEECCcc
Confidence 45556667899999999999 9999999999999999999999999999 99999732 2 321
Q ss_pred EEeeccchhcccCCCeEEEccCceecceecCcchhHHH--------------------hh--------------------
Q 026304 62 IAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL-------------------- 101 (240)
Q Consensus 62 i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~-------------------- 101 (240)
+...+. ...+ ...+|++|++.+++..++.++..+.. .+
T Consensus 80 ~~~~~~-~~~~-~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 80 IFQIDA-IKLR-KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred cccCCH-HHHh-cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 111111 1112 23589999887776656554433210 00
Q ss_pred -------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 102 -------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 102 -------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
+..++.+|++++||||++ +..+.+.|.++.+ +.|||++||+++++ ..+||++++|
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~----------~~~~d~v~~l 225 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQV----------ARVADYVAFL 225 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHH----------HHhCCEEEEE
Confidence 112589999999999988 4578888888854 58999999999999 8999999999
Q ss_pred cc-eeeccCCccee
Q 026304 169 TA-RCELCGKRAFF 181 (240)
Q Consensus 169 ~~-~~~~~g~~~~~ 181 (240)
++ ++...|+++++
T Consensus 226 ~~g~i~~~g~~~~~ 239 (257)
T PRK14246 226 YNGELVEWGSSNEI 239 (257)
T ss_pred ECCEEEEECCHHHH
Confidence 98 88777776543
No 178
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-27 Score=202.66 Aligned_cols=160 Identities=15% Similarity=0.088 Sum_probs=117.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~ 69 (240)
.+||+++|++++| ++|+||++++||+++|+||||||||||+ ++|+|+.- .|. ++...+...
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3489999999998 9999999999999999999999999999 99999621 342 221110001
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------hc
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------LG 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~~ 102 (240)
.......+|++|+..+++. ++.++..+.. . +.
T Consensus 83 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 1112235899998776642 4433322110 0 01
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|+++|||||++ +..+.++|+++++ +.|||++||+++++ ..+||++++|++ ++...
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~----------~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQA----------ARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHH----------HhhCCEEEEEECCEEEEc
Confidence 12588999999999988 4578888888864 58999999999999 899999999999 88877
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 230 g~~~~~ 235 (253)
T PRK14261 230 DKTTQI 235 (253)
T ss_pred CCHHHH
Confidence 776543
No 179
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.1e-27 Score=197.00 Aligned_cols=151 Identities=20% Similarity=0.093 Sum_probs=112.1
Q ss_pred EEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--chhcccCCC
Q 026304 11 VTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SKDTRYAID 76 (240)
Q Consensus 11 l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~~~~~~~~ 76 (240)
+.+ +|+++| + |+||++++ ++++|+||||||||||+ ++|+|+. ++|.++..... .........
T Consensus 2 ~~~-~l~~~~~~~~~-~vsl~i~~-e~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL-KIDFDLNE-EVTGIFGASGAGKSTLL-RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee-CceEEEcc-eeEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 455 889998 6 99999999 99999999999999999 9999972 23333221110 001111235
Q ss_pred eEEEccCceecceecCcchhHHHh-----------------h-----------------------chhhhccCcEEEEcC
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-----------------L-----------------------GDDAYAKLDVIGIDE 116 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-----------------~-----------------------~~~l~~~p~lllLDE 116 (240)
+|++|+..+++.+++.++..+... + ...++.+|++|+|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 899999887777677665432110 0 112589999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
|++ +..+.++|++++++.|.|||++|||++++ ..+||++++|++ ++...
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA----------EYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH----------HHhcCEEEEEECCEEEec
Confidence 988 45788999998764589999999999999 899999999998 76543
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=2.1e-27 Score=201.89 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=119.6
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++++|++++| ++++||++.+|++++|+||||||||||+ ++|+|+. ++|.++...+ ......+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~i~g~~~~~~~----~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLL-RIIAGLEQPDSGRIRLNGQDATRVH----ARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCC----hhhcCEE
Confidence 4688999988 9999999999999999999999999999 9999972 2333322111 1122358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++..++.++..+... + ...++.+|++++||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99998877776666655433110 0 11158899999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||++ ...+.++|++++++.+.|||++||+++++ ..+||++++|++ ++...|+++.+
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA----------MEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HhhcCEEEEEECCEEEEecCHHHH
Confidence 9988 45788999988763489999999999999 899999999999 88777776544
No 181
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=203.39 Aligned_cols=157 Identities=12% Similarity=0.083 Sum_probs=116.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc-------hh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS-------KD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~-------~~ 70 (240)
+++++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. .|. +...... ..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~-I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEGE-VLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcccCCCcceE-EEECCEeccccccChH
Confidence 79999999998 8999999999999999999999999999 99999742 332 2211100 01
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~ 103 (240)
......+|++|+..+++..++.++..+.. .+ +.
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 11223589999877766555554432110 00 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A- 170 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~- 170 (240)
.++.+|++||||||++ ...+.++|+++++ +.|||++|||++++ ..+||++++|+ +
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~----------~~~~d~i~~l~~~~~~~~g 229 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQA----------ARVSDQTAFFNLEATGKPG 229 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhCCEEEEEecccCCCCc
Confidence 1588999999999988 4578888888853 58999999999999 89999999996 5
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
++...|+++.
T Consensus 230 ~i~~~~~~~~ 239 (258)
T PRK14241 230 RLVEIDDTEK 239 (258)
T ss_pred eEEecCCHHH
Confidence 7777777654
No 182
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=6.3e-27 Score=200.38 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=114.2
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc---h-hCC------ceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE---S-DNG------RNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl---~-~~g------~~i~~~~~~~~~~~ 73 (240)
++|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+ . ..| .++...++... +.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~-~~ 83 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLS-KVIAGHPAYKILEGDILFKGESILDLEPEER-AH 83 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHH-HHHcCCCcCcCCCceEEECCEEcccCChhhh-he
Confidence 489999999998 8999999999999999999999999999 999996 1 223 22222211111 11
Q ss_pred CCCeEEEccCceecceecCcchhH--------------------------HHh---------------h----------c
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSF--------------------------RQK---------------L----------G 102 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~--------------------------~~~---------------~----------~ 102 (240)
...++++|+..+++..++.++..+ ... + .
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 113577787654443332211100 000 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeec
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCEL 174 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~ 174 (240)
..++.+|++||||||++ ...+.++|+++++ .|.|||++|||++++ ..+ ||++++|++ ++..
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~----------~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLL----------DYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HhhhCCEEEEEeCCEEEE
Confidence 12588999999999988 4578899999876 689999999999998 776 899999998 8887
Q ss_pred cCCcc
Q 026304 175 CGKRA 179 (240)
Q Consensus 175 ~g~~~ 179 (240)
.|+++
T Consensus 233 ~~~~~ 237 (252)
T CHL00131 233 TGDAE 237 (252)
T ss_pred ecChh
Confidence 77765
No 183
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=227.15 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=123.3
Q ss_pred ceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEe
Q 026304 9 AAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAM 64 (240)
Q Consensus 9 ~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~ 64 (240)
++|+++||++.| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|+++..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG-RALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCcEEEECCEECCc
Confidence 589999999866 5799999999999999999999999999 9999972 34444432
Q ss_pred eccch-hcccCCCeEEEccC--ceecceecCcchhHHH--------------------hh--------------------
Q 026304 65 IKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ--------------------KL-------------------- 101 (240)
Q Consensus 65 ~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~--------------------~~-------------------- 101 (240)
.+... .......+|++|++ .+++.+++.+++.+.. .+
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 22111 11122358999986 4666666654432210 00
Q ss_pred ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
+..++.+|++|||||||+ +.+++++|++++++.|.|||++|||++++ ..+||||++|++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v----------~~~~dri~vl~~G 540 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV----------ERISHRVAVMYLG 540 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence 112588999999999988 45799999999875689999999999999 999999999999
Q ss_pred eeeccCCccee
Q 026304 171 RCELCGKRAFF 181 (240)
Q Consensus 171 ~~~~~g~~~~~ 181 (240)
+++..|+++.+
T Consensus 541 ~iv~~g~~~~i 551 (623)
T PRK10261 541 QIVEIGPRRAV 551 (623)
T ss_pred EEEEecCHHHH
Confidence 88888887653
No 184
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-27 Score=202.40 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=118.0
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccchh
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSSKD 70 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~~~ 70 (240)
++|+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ..|. ++...+....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 589999999998 8999999999999999999999999999 9999973 2342 2211111001
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~ 103 (240)
......+|++|+..+++ .++.++..+.. .+ ..
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 11223589999877665 45544432210 00 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++|+||||++ +..+.++|+++.+ +.|||++|||++++ ..+|||+++|++ ++...|
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~----------~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQA----------SRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHH----------HHhcCEEEEEECCeEEEeC
Confidence 1478999999999988 4578889988865 48999999999999 899999999999 888777
Q ss_pred Ccce
Q 026304 177 KRAF 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+++.
T Consensus 229 ~~~~ 232 (251)
T PRK14270 229 KTEK 232 (251)
T ss_pred CHHH
Confidence 7654
No 185
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=203.12 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=116.8
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~ 69 (240)
++|+++|++++| ++|+||++++|++++|+||||||||||+ ++|+|+.. .|. +..... ..
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~g~i~~~G~-i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFL-KCLNRMNELESEVRVEGR-VEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCccccce-EEECCEEhhccccch
Confidence 489999999998 8999999999999999999999999999 99999832 332 221110 10
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~ 102 (240)
.......+|++|+..+++ .++.++..+.. .+ +
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 111223578898876666 55544332210 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc------
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA------ 170 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~------ 170 (240)
..++.+|++|+||||++ ...+.+.|++++++.+.|||++|||++++ ..+||++++|++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i----------~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV----------SRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHhcCEEEEEccCCCcCc
Confidence 12588999999999988 45788888888654589999999999999 999999999994
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
+++..|+++.
T Consensus 233 ~i~~~~~~~~ 242 (261)
T PRK14258 233 QLVEFGLTKK 242 (261)
T ss_pred eEEEeCCHHH
Confidence 5555566544
No 186
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=203.88 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=118.9
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc------
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS------ 68 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~------ 68 (240)
+.++|+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+.. .|. +......
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~ 94 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTGQ-ILYRGIDINRKEI 94 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCccCCCCcceE-EEECCEEcccccC
Confidence 34589999999998 8999999999999999999999999999 99999742 342 2211100
Q ss_pred -hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh--------------------------
Q 026304 69 -KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL-------------------------- 101 (240)
Q Consensus 69 -~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~-------------------------- 101 (240)
........+|++|+..+++ .++.++..+.. .+
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 0111223589999876665 34444332210 00
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++|+||||++ ...+.++|+++.+ +.|||++||+++++ ..+||++++|++ ++.
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQQA----------ARASDYTAFFYLGDLI 241 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhcCEEEEEECCEEE
Confidence 112588999999999988 4578888888853 68999999999999 899999999999 888
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|++..+
T Consensus 242 ~~g~~~~~ 249 (267)
T PRK14237 242 EYDKTRNI 249 (267)
T ss_pred EeCCHHHH
Confidence 77776543
No 187
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-27 Score=201.75 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=117.1
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeec-------cch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIK-------SSK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~-------~~~ 69 (240)
++|+++|++++| ++++||+|.+|++++|+||||||||||+ ++|+|+.. .|. +.... ...
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEGA-VLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCccccCCcccE-EEECCEEccccccCh
Confidence 479999999998 8999999999999999999999999999 99999732 233 21111 000
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~ 102 (240)
.......+|++|+..+++. ++.++..+.. . + .
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 1112235899998776653 4443332110 0 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++|+||||++ ...+.++|+++. ++.|||++|||++++ ..+||++++|++ ++...
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~----------~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQA----------ARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHH----------HhhCCEEEEEeCCeEEEe
Confidence 12588999999999988 346888888884 478999999999999 899999999998 88777
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 228 ~~~~~~ 233 (251)
T PRK14249 228 GRTGEI 233 (251)
T ss_pred CCHHHH
Confidence 776543
No 188
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.3e-27 Score=192.59 Aligned_cols=148 Identities=20% Similarity=0.171 Sum_probs=114.3
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----hCCceEEeeccch-hcccCC
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----DNGRNIAMIKSSK-DTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----~~g~~i~~~~~~~-~~~~~~ 75 (240)
+|+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ..|. +....... ......
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~G~-i~~~g~~~~~~~~~~ 80 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGE-ILINGRPLDKNFQRS 80 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCcceE-EEECCEehHHHhhhc
Confidence 68899998876 7899999999999999999999999999 9999963 2332 22111110 111123
Q ss_pred CeEEEccCceecceecCcchhHHHh---h----------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK---L----------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGK 136 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~---~----------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~ 136 (240)
.+|++|+..+++.+++.++..+... + ...++.+|++|++|||++ +..+++.++++++ .|.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~ 159 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQ 159 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCC
Confidence 5899998888888888888765321 2 334789999999999988 4578889998876 689
Q ss_pred EEEEEecChh-hhhcccchHHHHHhhccceeeecc
Q 026304 137 TVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 137 tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|||++||+++ .+ ..+||++++|++
T Consensus 160 tiiivtH~~~~~~----------~~~~d~i~~l~~ 184 (192)
T cd03232 160 AILCTIHQPSASI----------FEKFDRLLLLKR 184 (192)
T ss_pred EEEEEEcCChHHH----------HhhCCEEEEEcC
Confidence 9999999998 46 789999999975
No 189
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.5e-27 Score=205.96 Aligned_cols=158 Identities=14% Similarity=0.048 Sum_probs=119.4
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
+|+++|++++| ++++||++.+||+++|+|+||||||||+ ++|+|+. ++|+++...+. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~-~~~~- 80 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTA-RLIDGLFEEFEGKVKIDGELLTAENV-WNLR- 80 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCCEEEECCEECCcCCH-HHHh-
Confidence 79999999987 7899999999999999999999999999 9999972 34444322111 1112
Q ss_pred CCCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCc
Q 026304 74 AIDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLD 110 (240)
Q Consensus 74 ~~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~ 110 (240)
...+|++|++. .+...++.+++.+... ++..++.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 33589999863 4444555544432100 0112589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +..+.++|++++++.|.|||++|||++++ . .||++++|++ ++...|+++++
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA----------A-SSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999988 45788999998764589999999999998 6 5999999999 88888877653
No 190
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.94 E-value=4.8e-27 Score=203.26 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=117.4
Q ss_pred eEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc
Q 026304 10 AVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS 67 (240)
Q Consensus 10 ~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~ 67 (240)
||+++|++++| ++|+||+|++|++++|+||||||||||+ ++|+|+. ++|+++....+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLA-RLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccCh
Confidence 78999998876 5799999999999999999999999999 9999972 23433332222
Q ss_pred ch-hcccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304 68 SK-DTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL----------------------- 101 (240)
Q Consensus 68 ~~-~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~----------------------- 101 (240)
.. .......+|++|+.. +++..++.++..+ ...+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 11 111223589999862 3333443332211 0000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++||||||++ +..+.++|++++++.+.|||++||+++++ ..+||++++|++ ++.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i----------~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLV----------ERFCQRVMVMDNGQIV 231 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHH----------HHhCCEEEEEECCEEe
Confidence 112589999999999987 34688999988764589999999999999 889999999998 888
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++++
T Consensus 232 ~~g~~~~~ 239 (268)
T PRK10419 232 ETQPVGDK 239 (268)
T ss_pred eeCChhhc
Confidence 88876553
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-27 Score=201.07 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=116.3
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~ 69 (240)
++|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +..... ..
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~-v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDL 80 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccccccCCCcceE-EEECCEEcccccchH
Confidence 479999999998 8999999999999999999999999999 99999742 332 221110 00
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------h--h-------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K--L-------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~--~-------------------------~ 102 (240)
.......+|++|+..+++ .++.++..+.. . + .
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 111223588999876654 34444332110 0 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ +..+.+.|+++.+ +.|||++|||++++ ..+||++++|++ ++...
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQA----------GRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHH----------HhhcCEEEEEECCEEEEe
Confidence 12588999999999987 4578888888853 68999999999999 899999999998 88777
Q ss_pred CCcce
Q 026304 176 GKRAF 180 (240)
Q Consensus 176 g~~~~ 180 (240)
|+++.
T Consensus 228 ~~~~~ 232 (251)
T PRK14251 228 GPTEE 232 (251)
T ss_pred CCHHH
Confidence 76543
No 192
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=203.70 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=117.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS------- 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~------- 68 (240)
.++|+++|+++.| ++|+||+|++|++++|+||||||||||+ ++|+|+. ..|. +......
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTGK-ITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceE-EEECCEECcccccc
Confidence 4589999999998 8999999999999999999999999999 9999974 2332 2211110
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHHH---------------------h--h------------------------
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ---------------------K--L------------------------ 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~--~------------------------ 101 (240)
........+|++|+..+++. ++.+++.+.. . +
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 11112235899998766653 4443332110 0 0
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
+..++.+|++||||||++ +..+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++.
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~----------~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQA----------ARVSQRTAFFHLGNLV 241 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHH----------HhhCCEEEEEECCEEE
Confidence 112588999999999988 4578889988864 68999999999999 899999999998 888
Q ss_pred ccCCcce
Q 026304 174 LCGKRAF 180 (240)
Q Consensus 174 ~~g~~~~ 180 (240)
..|++..
T Consensus 242 ~~g~~~~ 248 (267)
T PRK14235 242 EVGDTEK 248 (267)
T ss_pred EeCCHHH
Confidence 7777654
No 193
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-27 Score=205.33 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=117.4
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSS 68 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~ 68 (240)
..++|+++|++++| ++|+||+|++|++++|+||||||||||+ ++|+|+. ..|. ++......
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFL-RAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 34589999999998 8999999999999999999999999999 9999962 2232 22111011
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHHH------------------------------h-----------------h
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------------------K-----------------L 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------------------~-----------------~ 101 (240)
........+|++|++.+++. ++.+++.+.. . +
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCV 193 (286)
T ss_pred hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHH
Confidence 11112235899998766542 3333222100 0 0
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
...++.+|++||||||++ ...+.+.|++++. +.|||++|||++++ ..+||++++|++ ++..
T Consensus 194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~----------~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQA----------SRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEE
Confidence 112588999999999988 4578888888864 58999999999999 899999999998 8888
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|++..+
T Consensus 262 ~g~~~~~ 268 (286)
T PRK14275 262 HAPTAQL 268 (286)
T ss_pred eCCHHHH
Confidence 8876543
No 194
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-27 Score=203.17 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=117.7
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS------- 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~------- 68 (240)
.++|+++|++++| ++++||+|++|++++|+|+||||||||+ ++|+|+. ..|. +......
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTGK-ILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCcee-EEECCEEccccccc
Confidence 4589999999998 8999999999999999999999999999 9999974 2232 2211100
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHH----------------H----h------h---------------------
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR----------------Q----K------L--------------------- 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~----------------~----~------~--------------------- 101 (240)
........+|++|+..+++. ++.++..+. . . +
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 01112235899998766542 444332210 0 0 0
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+..++.+|++||||||++ ...+.++|+++.+ +.|||++|||++++ ..+||++++|++ ++..
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i----------~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQA----------ARISDKTAFFLNGYVNE 246 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHH----------HHhCCEEEEEECCEEEE
Confidence 112588999999999988 4578888888864 68999999999999 899999999999 8877
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|++..+
T Consensus 247 ~g~~~~~ 253 (271)
T PRK14238 247 YDDTDKI 253 (271)
T ss_pred eCCHHHH
Confidence 7776543
No 195
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.94 E-value=3.8e-27 Score=191.97 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=109.3
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++... + ...+ ..
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~-~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL-QLLTGDLKPQQGEITLDGVPVSDL-E-KALS-SL 76 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCEEHHHH-H-HHHH-hh
Confidence 4678888887 7899999999999999999999999999 9999972 223222111 0 1111 23
Q ss_pred CeEEEccCceecceecCcch--------hHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEE
Q 026304 76 DSVVTHDGAKLPCWALPELT--------SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVA 141 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~--------~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~v 141 (240)
.+|++|++.+++ .++.++. .....+...++.+|++|+||||++ ...+++.|+++. ++.|||++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~ 153 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWI 153 (178)
T ss_pred EEEEccCCeeec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEE
Confidence 489999887775 4665543 111123455799999999999987 457888888874 47899999
Q ss_pred ecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 142 GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 142 tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
|||++++ . .||++++|++ ++..
T Consensus 154 sh~~~~~----------~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 154 THHLTGI----------E-HMDKILFLENGKIIM 176 (178)
T ss_pred ecCHHHH----------H-hCCEEEEEECCEEEe
Confidence 9999988 5 6999999988 6654
No 196
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-27 Score=220.42 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=117.4
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++. ......
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~-~~~~~~ 80 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLL-KILSGNYQPDAGSILIDGQEMRFASTT-AALAAG 80 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHH-HHHhCC
Confidence 589999999998 8999999999999999999999999999 9999973 233332211111 111223
Q ss_pred CeEEEccCceecceecCcchhHHH---------------h-------h-----------------------chhhhccCc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ---------------K-------L-----------------------GDDAYAKLD 110 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------~-------~-----------------------~~~l~~~p~ 110 (240)
.+|++|...+++.+++.++..+.. . + +..++.+|+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 589999877766656544432210 0 0 112588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
+|||||||+ ...+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...+
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~----------~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEI----------FALCDAITVFKDGRYVATF 222 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeec
Confidence 999999988 4578899999876 699999999999999 899999999998 765444
No 197
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.1e-27 Score=202.16 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=115.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------c
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS-------S 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~-------~ 68 (240)
.++|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ..|. +..... .
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCceE-EEECCEEccccccC
Confidence 4589999999998 8999999999999999999999999999 9999863 1232 221110 0
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHH------------------Hh---------------------------hch
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QK---------------------------LGD 103 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~---------------------------~~~ 103 (240)
........+|++|+..+++. ++.++..+. .. +..
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred hHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 01111235899998766542 443332210 00 011
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--------
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT-------- 169 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~-------- 169 (240)
.++.+|++||||||++ +..+.++|.++.+ +.|||++|||++++ ..+|||+++|+
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~----------~~~~d~v~~l~~~~~~~~~ 232 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQA----------ARVSDMTAFFNVELTEGGG 232 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhCCEEEEEecccccccc
Confidence 2588999999999988 4578899988865 47999999999999 99999999998
Q ss_pred -c-eeeccCCccee
Q 026304 170 -A-RCELCGKRAFF 181 (240)
Q Consensus 170 -~-~~~~~g~~~~~ 181 (240)
+ +++..|+++.+
T Consensus 233 ~~g~i~~~~~~~~~ 246 (264)
T PRK14243 233 RYGYLVEFDRTEKI 246 (264)
T ss_pred cCceEEEeCCHHHH
Confidence 5 77777766543
No 198
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.3e-27 Score=200.98 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=116.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----hCC------ceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----DNG------RNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~~g------~~i~~~~~~~~~~~ 73 (240)
+++++|+++.| ++++||++.+||+++|+||||||||||+ ++|+|+. ..| +++...+. ...+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~- 78 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFL-RCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALR- 78 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCCceEEEECCEecccCCH-HHHh-
Confidence 68899999998 8999999999999999999999999999 9999973 233 22221111 1112
Q ss_pred CCCeEEEccCceecceecCcchhHH---------------------Hh--h-------------------------chhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR---------------------QK--L-------------------------GDDA 105 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------------------~~--~-------------------------~~~l 105 (240)
...+|++|+..+++ .++.++..+. .. + ...+
T Consensus 79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 79 KNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 23589999877665 3554443221 00 0 1115
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|+||||++ +..+.+.|+++.+ +.|||++|||++++ ..+||++++|++ ++...|++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQQG----------KRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH----------HhhCcEEEEEECCEEEEECCH
Confidence 88999999999987 4578888888753 78999999999999 899999999999 88877776
Q ss_pred ce
Q 026304 179 AF 180 (240)
Q Consensus 179 ~~ 180 (240)
..
T Consensus 226 ~~ 227 (246)
T PRK14269 226 KE 227 (246)
T ss_pred HH
Confidence 54
No 199
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=6.3e-27 Score=194.64 Aligned_cols=144 Identities=19% Similarity=0.103 Sum_probs=108.7
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++.... ...+ ...
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~-~~~ 76 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLWQGEPIRRQR--DEYH-QDL 76 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccch--HHhh-hhe
Confidence 58999999998 8999999999999999999999999999 9999972 2333332211 1111 224
Q ss_pred eEEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP 117 (240)
++++|...+++.+++.++..+.... ...++.+|++++||||
T Consensus 77 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 77 LYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred EEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7888877776666666554332100 1125899999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
++ +..+.++|+++++ .+.|||++|||++++ .++.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i----------~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPV----------ASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhh----------ccCCceEEec
Confidence 87 4578888988876 689999999999999 7777787766
No 200
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.7e-27 Score=205.38 Aligned_cols=160 Identities=12% Similarity=0.040 Sum_probs=115.9
Q ss_pred ceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEee-c-c-
Q 026304 9 AAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMI-K-S- 67 (240)
Q Consensus 9 ~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~-~-~- 67 (240)
..|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++... . .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMI-QLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEccccccccc
Confidence 368999999877 6799999999999999999999999999 9999972 233333210 0 0
Q ss_pred chhcccCCCeEEEccCc--eecceecCcchhHHH-------------------hh------------------------c
Q 026304 68 SKDTRYAIDSVVTHDGA--KLPCWALPELTSFRQ-------------------KL------------------------G 102 (240)
Q Consensus 68 ~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~-------------------~~------------------------~ 102 (240)
.........+|++|++. +++ .++.++..+.. .+ .
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 01111223589999752 232 24433332210 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ +..++++|+++.++.|+|||++|||++++ ..+||++++|++ ++...
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV----------LRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12588999999999988 45788889888764589999999999999 899999999999 88777
Q ss_pred CCcce
Q 026304 176 GKRAF 180 (240)
Q Consensus 176 g~~~~ 180 (240)
|+++.
T Consensus 233 g~~~~ 237 (289)
T PRK13645 233 GSPFE 237 (289)
T ss_pred CCHHH
Confidence 77654
No 201
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.94 E-value=6.2e-27 Score=200.78 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=114.2
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEcc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. .....+... . +. ..+|++|+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~-~----~~-~i~~v~q~ 75 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLV-RVVLGLVAPDEGVIKRN-G----KL-RIGYVPQK 75 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEEC-C----cc-CEEEeccc
Confidence 489999999998 8999999999999999999999999999 9999973 222223211 1 11 24788887
Q ss_pred Cceecce--ecCcchh---------H---HHh-----------------------hchhhhccCcEEEEcCccC------
Q 026304 83 GAKLPCW--ALPELTS---------F---RQK-----------------------LGDDAYAKLDVIGIDEAQF------ 119 (240)
Q Consensus 83 ~~~~~~~--~~~~~~~---------~---~~~-----------------------~~~~l~~~p~lllLDEP~~------ 119 (240)
..+++.+ ++.++.. . ... +...++.+|++||||||++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 155 (251)
T PRK09544 76 LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG 155 (251)
T ss_pred cccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 6544332 2221110 0 000 0122589999999999988
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcce
Q 026304 120 FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAF 180 (240)
Q Consensus 120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~ 180 (240)
+..+.+.|+++.++.|.|||++|||++++ ..+||++++|++++...|+++.
T Consensus 156 ~~~l~~~L~~~~~~~g~tiiivsH~~~~i----------~~~~d~i~~l~~~i~~~g~~~~ 206 (251)
T PRK09544 156 QVALYDLIDQLRRELDCAVLMVSHDLHLV----------MAKTDEVLCLNHHICCSGTPEV 206 (251)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEECCceEeeCCHHH
Confidence 45788889888763489999999999999 8999999999777666777654
No 202
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=4.7e-27 Score=216.57 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=124.2
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc------------hhCCceEEeecc
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE------------SDNGRNIAMIKS 67 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl------------~~~g~~i~~~~~ 67 (240)
++|+++||++.| ++||||++.+||++||+|.|||||||+. +.|.|+ .++|+++...+.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a-~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLA-LALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHH-HHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 489999999998 7999999999999999999999999999 999997 234444444443
Q ss_pred chh--cccCCCeEEEccCc--eecceecCcchh--------------------HHH---------------hh-ch----
Q 026304 68 SKD--TRYAIDSVVTHDGA--KLPCWALPELTS--------------------FRQ---------------KL-GD---- 103 (240)
Q Consensus 68 ~~~--~~~~~~~~v~q~~~--~~~~~~~~~~~~--------------------~~~---------------~~-~~---- 103 (240)
... .|...++++||++. +-|.+++.+... +.. .+ ||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 322 23344589999853 223333321110 000 00 11
Q ss_pred -----hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 104 -----DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 104 -----~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
.++.+|++||+||||. +.+++++|+++.++.|+++|++|||+..+ ..+||||++|++ +
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv----------a~~aDrv~Vm~~G~ 232 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV----------AELADRVVVMYKGE 232 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH----------HHhcCeEEEEECCE
Confidence 2589999999999987 56899999999988999999999999999 999999999999 9
Q ss_pred eeccCCcce
Q 026304 172 CELCGKRAF 180 (240)
Q Consensus 172 ~~~~g~~~~ 180 (240)
++..|+++.
T Consensus 233 iVE~G~~~~ 241 (539)
T COG1123 233 IVETGPTEE 241 (539)
T ss_pred EEEecCHHH
Confidence 999998765
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.5e-27 Score=200.17 Aligned_cols=156 Identities=12% Similarity=0.121 Sum_probs=115.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~ 70 (240)
+|+++|+++.| ++|+||+|++||+++|+||||||||||+ ++|+|+.. .|. +..... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceE-EEECCEEccccccchH
Confidence 68999999998 8999999999999999999999999999 99999621 232 221110 001
Q ss_pred cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~ 103 (240)
......+|++|+..+++ .++.++..+.. .+ ..
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 11223589999876665 45544332210 00 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++|+||||++ +..+.++|+++. .+.|||++|||++.+ ..+||++++|++ ++...|
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~----------~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIVTHNMQQA----------SRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEEeCHHHH----------HhhCCEEEEEECCEEEEeC
Confidence 2588999999999988 457888888885 378999999999999 899999999998 887777
Q ss_pred Ccce
Q 026304 177 KRAF 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+++.
T Consensus 228 ~~~~ 231 (250)
T PRK14240 228 DTVD 231 (250)
T ss_pred CHHH
Confidence 6554
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=5.4e-27 Score=194.88 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=106.4
Q ss_pred EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hcccCCCe
Q 026304 13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DTRYAIDS 77 (240)
Q Consensus 13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~~~~~~~ 77 (240)
++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++....... ..+....+
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 46788877 8999999999999999999999999999 9999972 2333332221111 11122358
Q ss_pred EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD 115 (240)
|++|+..+++..++.++..+... + ...++.+|++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999888777777665543110 0 11258999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
||++ +..+.++|+++.+ .|.|||++||+++.. .+||++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-----------~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVA-----------KQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-----------hhcCEEEeC
Confidence 9988 4578999998876 589999999999865 579999875
No 205
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.7e-27 Score=199.00 Aligned_cols=155 Identities=21% Similarity=0.179 Sum_probs=119.1
Q ss_pred EEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304 11 VTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 11 l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
|+++|+++.| ++++||+|.+||+++|+||||||||||+ ++|+|+. ++|.++...+. .+ ...++
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl-~~l~G~~~p~~G~v~i~g~~~~~~~~---~~-~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLL-ETIAGFIKPDSGKILLNGKDITNLPP---EK-RDISY 75 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcCcCCh---hH-cCEEE
Confidence 4678899888 8999999999999999999999999999 9999972 33433322111 11 23589
Q ss_pred EEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcC
Q 026304 79 VTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDE 116 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDE 116 (240)
++|+..+++..++.++..+... + +..++.+|++++|||
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 9998887776666655442110 0 112588999999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++ +..+.++|+++..+.|.|||++||+++++ ..+||++++|++ ++...|+++.
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA----------WALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence 988 45788889988764589999999999999 899999999998 8877776553
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=193.29 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=115.5
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CCceEEeeccc----hhc
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NGRNIAMIKSS----KDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g~~i~~~~~~----~~~ 71 (240)
.+.++|++|.| ++++||++++|++++|+||||||||||+ ++|+|+.. .|. +...... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~G~-i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLL-KALANRTEGNVSVEGD-IHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHH-HHhcccCCCCCCcceE-EEECCEECccchhh
Confidence 57899999998 7899999999999999999999999999 99999733 332 2211110 011
Q ss_pred ccCCCeEEEccCceecceecCcchhHHHh-------------------hchhhhccCcEEEEcCccC------hHHHHHH
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------LGDDAYAKLDVIGIDEAQF------FEDLYEF 126 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~p~lllLDEP~~------~~~i~~~ 126 (240)
.....+|++|+..+++.+++.++..+... ++..++.+|++||||||++ +..++++
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 160 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC 160 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 12235899998888888888877665321 1233689999999999988 4578999
Q ss_pred HHHHHhcCCCEEEEE-ecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 127 CCNAADHDGKTVVVA-GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 127 l~~l~~~~g~tvi~v-tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
++++.++.+.|++++ +|+.+.+ ..+||++++|++ ++...
T Consensus 161 l~~~~~~~~~t~ii~~~h~~~~~----------~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 161 IRTMADVLKTTTFVSLYQASDEI----------YDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHHHhCCCEEEEEEcCCHHHH----------HHhCCeEEEEECCEEEec
Confidence 999876446665555 5666888 899999999998 76543
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.9e-27 Score=199.54 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=115.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccchhc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSKDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~~~ 71 (240)
+|+++|+++.| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. ++....+....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 68999999998 9999999999999999999999999999 99999732 232 11100000111
Q ss_pred ccCCCeEEEccCceecceecCcchhHH--------------------Hhh---------------------------chh
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL---------------------------GDD 104 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~---------------------------~~~ 104 (240)
+ ...+|++|+..+++ .++.++..+. ..+ ...
T Consensus 82 ~-~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 82 R-IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred H-hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 2 23589999877665 3443332210 000 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++||||||++ +..+.++|+++++ +.|||++||+++++ ..+||++++|++ ++...|+
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQA----------RRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence 588999999999988 4578889998865 48999999999999 899999999999 8887777
Q ss_pred cce
Q 026304 178 RAF 180 (240)
Q Consensus 178 ~~~ 180 (240)
++.
T Consensus 228 ~~~ 230 (249)
T PRK14253 228 TQV 230 (249)
T ss_pred HHH
Confidence 654
No 208
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=6.7e-27 Score=198.71 Aligned_cols=141 Identities=19% Similarity=0.072 Sum_probs=102.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEE-ccCceecceec
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVT-HDGAKLPCWAL 91 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~-q~~~~~~~~~~ 91 (240)
++++||++++|++++|+||||||||||+ ++|+|+. ++|+++... .. ......+|++ |...+++.+++
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEVRVAGLVPWKR--RK-KFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccc--ch-hhcccEEEEcCCccccCCCCcH
Confidence 8999999999999999999999999999 9999972 223222110 11 1112347776 44555555555
Q ss_pred CcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCccC------hHHH
Q 026304 92 PELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQF------FEDL 123 (240)
Q Consensus 92 ~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~~------~~~i 123 (240)
.++..+... + +..++.+|++|+||||++ +..+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 544322110 0 112588999999999988 4578
Q ss_pred HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 124 YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 124 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
.++|++++++.+.|||++|||++++ ..+||++++|++ ++...
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDI----------EALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEec
Confidence 8999998764589999999999999 899999999988 66543
No 209
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=4.2e-27 Score=186.80 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=124.0
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-- 70 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-- 70 (240)
.|+++++++.. |++|+|.|++||.++|+||+|||||||| -+++|+ .+.|+++..+....+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl-~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHH-HHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 68899988865 8999999999999999999999999999 999998 345666555543322
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHhhc------------------------------------------hhhhcc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAK 108 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~ 108 (240)
.|.+..++|||...+.+.++..+|..+...+. ..++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 23334599999999999999888876644321 125789
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
|++|+.||||- -+++.+++..+..+.|.|.++||||+..+ .-|+|++.|.+ +++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-----------~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-----------ARCDRQLRLRSGRLV 225 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-----------Hhhhheeeeecceec
Confidence 99999999977 24799999999888999999999999887 67999999988 665
No 210
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.94 E-value=1.6e-26 Score=197.33 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=111.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-CC------ceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-NG------RNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-~g------~~i~~~~~~~~~~~~ 74 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. . .| .++...++... +..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 78 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLELSPEDR-AGE 78 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCccCCCCceEEEECCCccccCCHHHH-hhc
Confidence 58999999998 8999999999999999999999999999 9999972 2 23 22211111111 112
Q ss_pred CCeEEEccCceecceec-------C------------cchhHH---H-------------------h----------hch
Q 026304 75 IDSVVTHDGAKLPCWAL-------P------------ELTSFR---Q-------------------K----------LGD 103 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~-------~------------~~~~~~---~-------------------~----------~~~ 103 (240)
..+|++|+...++..+. . +...+. . . ++.
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 24788887543332110 0 000000 0 0 112
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeecc
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELC 175 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~ 175 (240)
.++.+|++|+||||++ ...+.++|+++++ .+.|||++|||++++ ..+ ||++++|++ ++...
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~----------~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRIL----------DYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HhhhCCEEEEEECCeEEEe
Confidence 3689999999999988 4578888888876 689999999999998 776 899999998 88777
Q ss_pred CCcc
Q 026304 176 GKRA 179 (240)
Q Consensus 176 g~~~ 179 (240)
|+++
T Consensus 228 g~~~ 231 (248)
T PRK09580 228 GDFT 231 (248)
T ss_pred CCHH
Confidence 7654
No 211
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=6.1e-27 Score=218.84 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=117.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc------hhcccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS------KDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~------~~~~~~ 74 (240)
+|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+.. .|. +...... ...+..
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl-~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhC
Confidence 47899999998 8999999999999999999999999999 99999742 333 2211110 011112
Q ss_pred CCeEEEccCceecceecCcchhHH-----------------------Hhh------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~------------------------~~~l~~ 107 (240)
..+|++|+..+++.+++.++..+. ..+ +..++.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 358999987666554443332210 000 112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
+|++||||||++ ...+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...++++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~----------~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEV----------KAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH----------HHhCCEEEEEeCCeEeeecCcc
Confidence 999999999988 4578999999876 699999999999999 899999999998 877766654
No 212
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=6.2e-27 Score=220.23 Aligned_cols=163 Identities=13% Similarity=0.031 Sum_probs=121.5
Q ss_pred CceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEe
Q 026304 8 PAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAM 64 (240)
Q Consensus 8 ~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~ 64 (240)
.+||+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG-LALLRLINSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCcEEEECCEEccc
Confidence 4589999999865 6899999999999999999999999999 9999973 33444332
Q ss_pred eccchh-cccCCCeEEEccC--ceecceecCcchhHHH---------------------hh-------------------
Q 026304 65 IKSSKD-TRYAIDSVVTHDG--AKLPCWALPELTSFRQ---------------------KL------------------- 101 (240)
Q Consensus 65 ~~~~~~-~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~---------------------~~------------------- 101 (240)
.+.... ......+|++|+. .+++.+++.+++.+.. .+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 221111 1112358999986 3555555554443210 00
Q ss_pred -----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 102 -----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 102 -----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+..++.+|++||||||++ +..++++|++++++.|.|||++|||++++ ..+||++++|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~----------~~~~d~i~~l~~ 501 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV----------RALCHQVIVLRQ 501 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HHhcCeEEEEEC
Confidence 111588999999999988 45789999999864589999999999999 899999999999
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
++...|+++.+
T Consensus 502 G~i~~~~~~~~~ 513 (529)
T PRK15134 502 GEVVEQGDCERV 513 (529)
T ss_pred CEEEEEcCHHHH
Confidence 88877776543
No 213
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.94 E-value=8.9e-27 Score=202.03 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=116.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----------CCceEEeeccc-----h
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----------NGRNIAMIKSS-----K 69 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----------~g~~i~~~~~~-----~ 69 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. .|. +...... .
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLL-KALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCcccccccCCceE-EEECCEEcccCCH
Confidence 58999999998 8999999999999999999999999999 99999732 232 2211100 0
Q ss_pred hcccCCCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------ch
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GD 103 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~ 103 (240)
..+....+|++|+...+..+++.+++.+. ..+ ..
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 11112347889876543334444332210 000 01
Q ss_pred hhh---------ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 104 DAY---------AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 104 ~l~---------~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
.++ .+|++||||||++ +..+.++|+++.++.|.|||++|||++++ ..+||++++|
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~----------~~~~d~i~~l 228 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA----------ARHADRIAML 228 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEEEE
Confidence 135 4999999999988 45789999998764489999999999999 8999999999
Q ss_pred cc-eeeccCCccee
Q 026304 169 TA-RCELCGKRAFF 181 (240)
Q Consensus 169 ~~-~~~~~g~~~~~ 181 (240)
++ ++...|+++.+
T Consensus 229 ~~G~i~~~g~~~~~ 242 (272)
T PRK13547 229 ADGAIVAHGAPADV 242 (272)
T ss_pred ECCeEEEecCHHHH
Confidence 99 88877876543
No 214
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=201.80 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=118.4
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc------h
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS------K 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~------~ 69 (240)
.++|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +...... .
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSGD-VLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCceE-EEECCEEccccchh
Confidence 4589999999999 8999999999999999999999999999 99999732 332 2211100 0
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~ 102 (240)
.......+|++|+..+++ .++.++..+.. .+ +
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 011123589999876665 45544332110 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++||||||++ +..+.+.|+++.+ +.|||++|||++++ ..+|||+++|++ ++...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~----------~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQA----------ARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence 12588999999999987 4578888888865 48999999999999 899999999999 88887
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 244 g~~~~~ 249 (276)
T PRK14271 244 GPTEQL 249 (276)
T ss_pred CCHHHH
Confidence 876654
No 215
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=201.16 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=118.5
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCce------EEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRN------IAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~------i~~~~~~~ 69 (240)
..+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|.- +...+...
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3589999999998 8999999999999999999999999999 9999973 23432 11100000
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~ 102 (240)
.......+|++|+..+++. ++.++..+.. .+ +
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 1111235899998776653 5544332210 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..++.+|++|+||||++ +..+.++|+++++ +.|||++||+++++ ..+||++++|++ ++...
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQA----------ARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEec
Confidence 12588999999999988 4578899988864 58999999999999 899999999999 88877
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 249 g~~~~~ 254 (272)
T PRK14236 249 GDTDTL 254 (272)
T ss_pred CCHHHH
Confidence 776543
No 216
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.94 E-value=4.3e-27 Score=201.38 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=112.7
Q ss_pred EEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCCCeEEEccC
Q 026304 12 TTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 12 ~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~~~~v~q~~ 83 (240)
+++||++.. |+++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++.. +....+|++|+.
T Consensus 2 ~~~~l~~~~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl-~~l~Gl~~~~G~i~~~g~~i~~~~~~~--~~~~i~~v~q~~ 78 (248)
T PRK03695 2 QLNDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLL-ARMAGLLPGSGSIQFAGQPLEAWSAAE--LARHRAYLSQQQ 78 (248)
T ss_pred cccccchhceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCeEEEECCEecCcCCHHH--HhhheEEecccC
Confidence 466777655 8999999999999999999999999999 9999973 2333332211111 112247889876
Q ss_pred ceecceecCcchhHH------------------Hhh-----------------------chhhhc-------cCcEEEEc
Q 026304 84 AKLPCWALPELTSFR------------------QKL-----------------------GDDAYA-------KLDVIGID 115 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~------------------~~~-----------------------~~~l~~-------~p~lllLD 115 (240)
..+..+++.++..+. ..+ ...++. +|++||||
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 555444444332221 000 111354 67999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||++ +..+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHT----------LRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence 9988 4578899998876 689999999999999 899999999999 88888876543
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=214.16 Aligned_cols=162 Identities=13% Similarity=0.056 Sum_probs=123.9
Q ss_pred CCceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceE
Q 026304 7 KPAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNI 62 (240)
Q Consensus 7 ~~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i 62 (240)
..++++++||++.| ++||||++.+||+++|+|+||||||||. |+|+|+ .++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla-r~i~gL~~P~~G~i~~~g~~- 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA-RILAGLLPPSSGSIIFDGQD- 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEEeCcc-
Confidence 34689999999987 5699999999999999999999999999 999998 234444
Q ss_pred Eeeccch-hcccCCCeEEEccCc--eecceecCcchhHHHh---------------------------------------
Q 026304 63 AMIKSSK-DTRYAIDSVVTHDGA--KLPCWALPELTSFRQK--------------------------------------- 100 (240)
Q Consensus 63 ~~~~~~~-~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~--------------------------------------- 100 (240)
....... ........++||++. +.|..|+.+.+.-...
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 2121111 111123478999763 5566666533211100
Q ss_pred -----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 101 -----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 101 -----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
++..++.+|++|++|||++ +.+++++|+++.++.|.|.+++|||+.++ ..+||||++|+
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV----------~~i~drv~vm~ 504 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV----------RYIADRVAVMY 504 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH----------HhhCceEEEEE
Confidence 0123689999999999988 56899999999988899999999999999 99999999999
Q ss_pred c-eeeccCCcce
Q 026304 170 A-RCELCGKRAF 180 (240)
Q Consensus 170 ~-~~~~~g~~~~ 180 (240)
. +++.+|+.+.
T Consensus 505 ~G~iVE~G~~~~ 516 (539)
T COG1123 505 DGRIVEEGPTEK 516 (539)
T ss_pred CCeEEEeCCHHH
Confidence 9 9999996553
No 218
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=221.10 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=122.0
Q ss_pred CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEE-------
Q 026304 8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIA------- 63 (240)
Q Consensus 8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~------- 63 (240)
.+||+++|++++| +++|||++++||+++|+||||||||||+ ++|+|+. ++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl-~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA-LALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCeEEEECCEEecccccccc
Confidence 4589999999987 7799999999999999999999999999 9999983 1222110
Q ss_pred ee---ccch--hcccCCCeEEEccC--ceecceecCcchhHHHh--------------------h---------------
Q 026304 64 MI---KSSK--DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK--------------------L--------------- 101 (240)
Q Consensus 64 ~~---~~~~--~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~--------------------~--------------- 101 (240)
.. +... ..+....+|++|++ .+++.+++.+++.+... +
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 00 1000 11112358999986 45666666554432100 0
Q ss_pred -----------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 102 -----------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 102 -----------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
+..++.+|++|||||||+ +.+++++++++.++.|+|||++|||++++ ..+|||
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~----------~~~adr 238 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV----------AEIADR 238 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCE
Confidence 111588999999999988 45799999999864599999999999999 999999
Q ss_pred eeeecc-eeeccCCccee
Q 026304 165 VTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 165 i~~l~~-~~~~~g~~~~~ 181 (240)
|++|++ +++..|+++.+
T Consensus 239 i~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEeeCCeecccCCHHHh
Confidence 999999 88888876543
No 219
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.94 E-value=1.1e-26 Score=195.57 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=108.2
Q ss_pred eEEEcceeEee------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEee----------
Q 026304 10 AVTTNQVNSGR------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMI---------- 65 (240)
Q Consensus 10 ~l~~~~ls~~~------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~---------- 65 (240)
||+++|++++| ++|+||+|.+||+++|+||||||||||+ ++|+|+. ..|. +...
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~-i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLL-KSLYANYLPDSGR-ILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCe-EEEecCCCccchhh
Confidence 57889998766 7899999999999999999999999999 9999983 2333 2211
Q ss_pred -ccch--hcccCCCeEEEccCceecceecCcchhHHH------------h-------h----------------------
Q 026304 66 -KSSK--DTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------K-------L---------------------- 101 (240)
Q Consensus 66 -~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~---------------------- 101 (240)
+... ..+....+|++|+..+++.+++.++..+.. . +
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 1100 011223589999887776655544432210 0 0
Q ss_pred --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
...++.+|++|+||||++ ...+.++|+++++ .|.|||++|||++++ ..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~----------~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVR----------ELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcceeEecC
Confidence 112588999999999988 4578899999876 689999999999999 88999998764
No 220
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.94 E-value=2.6e-26 Score=197.05 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=116.5
Q ss_pred ceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch------hCCceEEeeccc---hhcccCC
Q 026304 9 AAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES------DNGRNIAMIKSS---KDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~------~~g~~i~~~~~~---~~~~~~~ 75 (240)
.+|+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ..|. +...... ...+...
T Consensus 3 ~~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 3 QQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTC-AAALGILPAGVRQTAGR-VLLDGKPVAPCALRGRK 80 (254)
T ss_pred cEEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCCE-EEECCeeccccccccce
Confidence 479999999988 8999999999999999999999999999 9999973 2242 2211110 0111123
Q ss_pred CeEEEccCc--eecceecCcchhH-----------------HHh--------------------------hchhhhccCc
Q 026304 76 DSVVTHDGA--KLPCWALPELTSF-----------------RQK--------------------------LGDDAYAKLD 110 (240)
Q Consensus 76 ~~~v~q~~~--~~~~~~~~~~~~~-----------------~~~--------------------------~~~~l~~~p~ 110 (240)
.+|++|+.. +.+..++.++... ... +...++.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 588999863 2222222111100 000 0122589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +..+.++|++++++.|.|||++||+++.+ ..+||++++|++ ++...|+++.+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV----------ARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence 999999987 45788999988764589999999999999 899999999999 88877776543
No 221
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=201.00 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=116.3
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS------- 67 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~------- 67 (240)
..++|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+.. .|. +.....
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~-I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEGE-LTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceE-EEECCEEcccccc
Confidence 34589999999998 8999999999999999999999999999 99999742 332 221110
Q ss_pred chhcccCCCeEEEccCceecceecCcchhHHH------------------hh---------------------------c
Q 026304 68 SKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------KL---------------------------G 102 (240)
Q Consensus 68 ~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~~---------------------------~ 102 (240)
.........+|++|+..+++. ++.++..+.. .+ .
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred chHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 001112235899998766653 5544332210 00 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee-eecc-eeec
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT-KLTA-RCEL 174 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~-~l~~-~~~~ 174 (240)
..++.+|++||||||++ +..+.++|+++++ +.|||++|||++++ ..+|||++ +|++ ++..
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i----------~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQA----------ARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HhhcCEEEEEeeCCEEEE
Confidence 12588999999999988 4578889998875 37999999999999 89999975 5677 8877
Q ss_pred cCCcce
Q 026304 175 CGKRAF 180 (240)
Q Consensus 175 ~g~~~~ 180 (240)
.|+++.
T Consensus 261 ~g~~~~ 266 (285)
T PRK14254 261 FDDTDK 266 (285)
T ss_pred eCCHHH
Confidence 776544
No 222
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=188.01 Aligned_cols=143 Identities=20% Similarity=0.126 Sum_probs=107.0
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+.. . +...
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~ 77 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL-KLLLRLYDPTSGEILIDGVDLRDLDLE-S-LRKN 77 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhhhcCHH-H-HHhh
Confidence 4678888876 7899999999999999999999999999 9999972 233333221111 1 1123
Q ss_pred CeEEEccCceecceecCcch-h----HHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 76 DSVVTHDGAKLPCWALPELT-S----FRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~-~----~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
.+|++|+..+++ .++.++. . ....+...++.+|++|+||||++ +..+.++|+++.+ +.|||++|||
T Consensus 78 i~~~~~~~~~~~-~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~ 154 (171)
T cd03228 78 IAYVPQDPFLFS-GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHR 154 (171)
T ss_pred EEEEcCCchhcc-chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecC
Confidence 588999887765 4666553 1 11123455789999999999987 4578888888853 6999999999
Q ss_pred hhhhhcccchHHHHHhhccceeeecc
Q 026304 145 GDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 145 ~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++ .. ||++++|++
T Consensus 155 ~~~~----------~~-~d~~~~l~~ 169 (171)
T cd03228 155 LSTI----------RD-ADRIIVLDD 169 (171)
T ss_pred HHHH----------Hh-CCEEEEEcC
Confidence 9998 76 999999875
No 223
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.8e-26 Score=205.01 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=120.0
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CC------ceEEeeccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NG------RNIAMIKSS 68 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g------~~i~~~~~~ 68 (240)
.+|+++|++++| |+++||+|++||+++|+||||||||||+ ++|+|+.. .| +++......
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccc
Confidence 489999999988 8999999999999999999999999999 99999741 33 222111101
Q ss_pred hhcccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------h
Q 026304 69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------L 101 (240)
Q Consensus 69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~ 101 (240)
.....+..+|++|++.+++ .++.+|+.+.. . +
T Consensus 158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 0111223589999987764 35544443210 0 0
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+..++.+|++||||||++ ...+.+.|+++.+ +.|||++||+++++ ..+||||++|++ ++..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i----------~~~~Driivl~~G~i~e 304 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQA----------QRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEE
Confidence 112589999999999988 3468888888864 58999999999999 889999999999 9999
Q ss_pred cCCccee
Q 026304 175 CGKRAFF 181 (240)
Q Consensus 175 ~g~~~~~ 181 (240)
.|++..+
T Consensus 305 ~g~~~~l 311 (329)
T PRK14257 305 AGETKTI 311 (329)
T ss_pred eCCHHHH
Confidence 9998764
No 224
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.7e-27 Score=217.39 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=115.1
Q ss_pred EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
++|++++| ++|+||++++|++++|+||||||||||+ ++|+|+. ++|+++...++....+ ...+|+
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLL-KCLFGIYQKDSGSILFQGKEIDFKSSKEALE-NGISMV 78 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEECCEECCCCCHHHHHh-CCEEEE
Confidence 36788887 8999999999999999999999999999 9999973 2343332211111112 235899
Q ss_pred EccCceecceecCcchhHH---------------Hh-------h-----------------------chhhhccCcEEEE
Q 026304 80 THDGAKLPCWALPELTSFR---------------QK-------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~---------------~~-------~-----------------------~~~l~~~p~lllL 114 (240)
+|+..+++.+++.++..+. .. + +..++.+|++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9987666555554432210 00 0 1125889999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|||++ ...+.++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEI----------FQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEeecChhh
Confidence 99988 4578899999876 699999999999999 899999999999 8877776543
No 225
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=1.5e-26 Score=217.22 Aligned_cols=157 Identities=13% Similarity=0.014 Sum_probs=116.7
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-CCceEEee----------------
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-NGRNIAMI---------------- 65 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-~g~~i~~~---------------- 65 (240)
|+++|++++| ++++||++.+|++++|+||||||||||+ ++|+|+. . .|. +...
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~~~p~~G~-i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM-HVLRGMDQYEPTSGR-IIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhcccCCCCceE-EEEecccccccccccccccc
Confidence 4789999998 8999999999999999999999999999 9999973 2 332 2111
Q ss_pred -------c--------------cch-hcccCCCeEEEcc-CceecceecCcchhHHHh-------------------h--
Q 026304 66 -------K--------------SSK-DTRYAIDSVVTHD-GAKLPCWALPELTSFRQK-------------------L-- 101 (240)
Q Consensus 66 -------~--------------~~~-~~~~~~~~~v~q~-~~~~~~~~~~~~~~~~~~-------------------~-- 101 (240)
. ... .......+|++|+ ..+++.+++.+++.+... +
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 0 000 0011235899996 556665665554432110 0
Q ss_pred ---------------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccch
Q 026304 102 ---------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGS 154 (240)
Q Consensus 102 ---------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~ 154 (240)
+..++.+|++||||||++ ...++++|++++++.|.|||++|||++++
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~------ 232 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI------ 232 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------
Confidence 112588999999999988 45788999998764689999999999999
Q ss_pred HHHHHhhccceeeecc-eeeccCCcc
Q 026304 155 VLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 155 ~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
..+||++++|++ ++...|+++
T Consensus 233 ----~~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 233 ----EDLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred ----HHhcCEEEEEeCCEEeeecCHH
Confidence 899999999998 877666543
No 226
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=9.6e-27 Score=189.98 Aligned_cols=146 Identities=24% Similarity=0.203 Sum_probs=103.7
Q ss_pred EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304 12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
+++|++++| ++++||++.+|++++|+||||||||||+ ++|+|+. ++|.++....+. ..+ ...+|
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~-~~~-~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLL-KTLAGLLKPSSGEILLDGKDLASLSPK-ELA-RKIAY 77 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCcCCHH-HHH-HHHhH
Confidence 467888887 8999999999999999999999999999 9999972 233333221111 111 12356
Q ss_pred EEccCceeccee-----------cCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEE
Q 026304 79 VTHDGAKLPCWA-----------LPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVA 141 (240)
Q Consensus 79 v~q~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~v 141 (240)
++| ....+. +.........+...++.+|++++||||++ ...+.+.|.+++++.+.|+|++
T Consensus 78 ~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 78 VPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154 (180)
T ss_pred HHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 655 111111 11111112223455799999999999987 4578888988876338999999
Q ss_pred ecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 142 GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 142 tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
||+++++ ..+||++++|++ ++.
T Consensus 155 sh~~~~~----------~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 155 LHDLNLA----------ARYADRVILLKDGRIV 177 (180)
T ss_pred eCCHHHH----------HHhCCEEEEEECCEEE
Confidence 9999999 899999999988 654
No 227
>PRK04296 thymidine kinase; Provisional
Probab=99.94 E-value=1.8e-25 Score=184.12 Aligned_cols=180 Identities=31% Similarity=0.509 Sum_probs=137.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL 109 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p 109 (240)
.|.++.+.||+|+||||++++.+..+...|+.+..+++..+.+.....+..+.+..++.........+...+.. ...++
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 37899999999999999997777766667888776655434343333344443322222112222222222211 23478
Q ss_pred cEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304 110 DVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE 187 (240)
Q Consensus 110 ~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~ 187 (240)
++|++||.+++ +++.++++.++. .|++|++++++.++.+++|+.+..|..+||.|..|+..|..||.++.++.|+.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~~r~~~ 158 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLID 158 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccCCccceEEEEeC
Confidence 99999999885 358888877776 799999999999999999999999999999999999999999999999999984
Q ss_pred ------CCcEEEeCCcceEEeecchhhccC
Q 026304 188 ------ETETEIIGGADVYMPVCRQHYVNG 211 (240)
Q Consensus 188 ------~~~~~~~g~~~~y~~~c~~~~~~~ 211 (240)
+++++.+|+.+.|.++||+||...
T Consensus 159 ~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~~~ 188 (190)
T PRK04296 159 GGPAVYEGPQVLVGGNESYEAVCRKHYKEA 188 (190)
T ss_pred CCCccCCCCEEEECCcCcEEehhHHhhhcc
Confidence 567888999999999999999754
No 228
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=1.1e-26 Score=216.60 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=115.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCc------eEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGR------NIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~------~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ..|. ++...+.. . .....
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~~~~~~~-~-~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALA-RALAGELPLLSGERQSQFSHITRLSFE-Q-LQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCceEEECCcccccCCHH-H-HHHHh
Confidence 79999999999 8999999999999999999999999999 9999973 2232 22111111 1 11224
Q ss_pred eEEEccCce--e-c-----ceecCcchh-----------HHHhh-----------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAK--L-P-----CWALPELTS-----------FRQKL-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~--~-~-----~~~~~~~~~-----------~~~~~-----------------------~~~l~~~p~lllL 114 (240)
++++|+... + . .+++.++.. +...+ ...++.+|++|||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 788886432 1 0 233433221 00000 1226899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|||++ +..+.++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~ 221 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEI----------PDFVQFAGVLADCTLAETGEREE 221 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEEeCCHHH
Confidence 99988 4579999999886 589999999999999 999999999999 8888777653
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=2.1e-26 Score=216.62 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=117.4
Q ss_pred CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEee
Q 026304 8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMI 65 (240)
Q Consensus 8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~ 65 (240)
.+||+++|++++| ++++||++.+||+++|+||||||||||+ ++|+|+.. .|. ++...
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccceEEEECCEecccC
Confidence 3589999999987 6899999999999999999999999999 99999742 232 22221
Q ss_pred ccch--hcccCCCeEEEccCc--eecceecCcchhH--------------------H------------Hh---------
Q 026304 66 KSSK--DTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------R------------QK--------- 100 (240)
Q Consensus 66 ~~~~--~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~------------~~--------- 100 (240)
+... ..+....+|++|+.. +++.+++.++..+ . .+
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1111 111123589999853 3333332221110 0 00
Q ss_pred -----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 101 -----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 101 -----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
++..++.+|++|||||||+ ...++++|++++++.|.|||++|||++++ ..+||||++|+
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~dri~~l~ 231 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV----------RKLADRVAVMQ 231 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH----------HHhcCEEEEEE
Confidence 0112589999999999988 45789999998764589999999999999 89999999999
Q ss_pred c-eeeccCCcce
Q 026304 170 A-RCELCGKRAF 180 (240)
Q Consensus 170 ~-~~~~~g~~~~ 180 (240)
+ ++...|+++.
T Consensus 232 ~G~i~~~g~~~~ 243 (529)
T PRK15134 232 NGRCVEQNRAAT 243 (529)
T ss_pred CCEEEEeCCHHH
Confidence 9 8877776643
No 230
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.7e-26 Score=197.53 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=117.7
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK 69 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~ 69 (240)
.+|+++|+++.| ++++||++++||+++|+|+||||||||+ ++|+|+.. .|. +..... ..
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGPVKVEGV-VDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcCcccCCccceE-EEECCEeccccccch
Confidence 479999999998 8999999999999999999999999999 99999732 342 221110 00
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G 102 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~ 102 (240)
.......+|++|+..+++ .++.++..+.. . + +
T Consensus 84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 111123589999887765 56655443210 0 0 1
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec-----c-
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT-----A- 170 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~-----~- 170 (240)
..++.+|++|+||||++ +..+.+.|+++++ +.|||++|||++++ ..+||++++|+ +
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i----------~~~~d~i~~l~~~~~~~G 230 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQA----------TRVSDFTAFFSTDESRIG 230 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCeEEEEeccCCCCc
Confidence 11588999999999987 4578889988864 58999999999999 99999999997 4
Q ss_pred eeeccCCccee
Q 026304 171 RCELCGKRAFF 181 (240)
Q Consensus 171 ~~~~~g~~~~~ 181 (240)
+++..|+++.+
T Consensus 231 ~i~~~~~~~~~ 241 (259)
T PRK14260 231 QMVEFGVTTQI 241 (259)
T ss_pred eEEEeCCHHHH
Confidence 77777776653
No 231
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=3.4e-26 Score=193.68 Aligned_cols=146 Identities=20% Similarity=0.119 Sum_probs=107.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~ 98 (240)
++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +..............+|++|+..+++.+++.++..+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLL-NLISGLAQPTSGG-VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 5799999999999999999999999999 9999973 2232 2211111000001137899988777766666554331
Q ss_pred H--------------h-------h-----------------------chhhhccCcEEEEcCccC------hHHHHHHHH
Q 026304 99 Q--------------K-------L-----------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCC 128 (240)
Q Consensus 99 ~--------------~-------~-----------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~ 128 (240)
. . + ...++.+|++||||||++ +..+.+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 158 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 0 0 0 111588999999999988 457889998
Q ss_pred HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+++++.|.|||++|||++++ ..+||++++|++ ++...|++
T Consensus 159 ~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~ 199 (230)
T TIGR01184 159 QIWEEHRVTVLMVTHDVDEA----------LLLSDRVVMLTNGPAANIGQI 199 (230)
T ss_pred HHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEeCCcEecccCc
Confidence 88764589999999999999 899999999998 77766654
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=197.07 Aligned_cols=156 Identities=14% Similarity=0.071 Sum_probs=114.0
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccch-------hc
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSSK-------DT 71 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~~-------~~ 71 (240)
-+++|++++| ++++||+|.+|++++|+||||||||||+ ++|+|+.. .|. +....... ..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKGE-LDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcceE-EEECCEehHhcccchHH
Confidence 4688999988 8999999999999999999999999999 99999742 342 22211000 01
Q ss_pred ccCCCeEEEccCceecceecCcchhHH---------------------Hhh---------------------------ch
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFR---------------------QKL---------------------------GD 103 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~---------------------~~~---------------------------~~ 103 (240)
.....+|++|+..+++. ++.++..+. ..+ ..
T Consensus 84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 12235899998766653 443332211 000 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++|+||||++ +..+.+.|+++. .+.|||++|||++++ ..+||++++|++ ++...|
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSMKQA----------KKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HhhcCEEEEEECCEEEEeC
Confidence 2588999999999988 457888888884 379999999999999 899999999999 887777
Q ss_pred Cccee
Q 026304 177 KRAFF 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
+++.+
T Consensus 231 ~~~~~ 235 (251)
T PRK14244 231 TTQEI 235 (251)
T ss_pred CHHHH
Confidence 76543
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=2.5e-26 Score=191.32 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=112.7
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
..++++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.. ..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~- 81 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLI-LALFRFLEAEEGKIEIDGIDISTIPLE-DLR- 81 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEhHHCCHH-HHH-
Confidence 368999999987 7899999999999999999999999999 9999972 233333211111 112
Q ss_pred CCCeEEEccCceecceecCcchhHH---------Hh-------------------hchhhhccCcEEEEcCccC------
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR---------QK-------------------LGDDAYAKLDVIGIDEAQF------ 119 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------~~-------------------~~~~l~~~p~lllLDEP~~------ 119 (240)
...+|++|++.+++. ++.++..+. .. +...++.+|++||||||++
T Consensus 82 ~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 82 SSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred hhEEEEecCCcccCc-cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 235899998876653 554433211 00 1223689999999999987
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 120 FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
+..++++|+++. .+.|+|++||+++++ .. ||++++|++ ++...|+
T Consensus 161 ~~~l~~~l~~~~--~~~tiii~th~~~~~----------~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 161 DALIQKTIREEF--TNSTILTIAHRLRTI----------ID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHHHHHhc--CCCEEEEEeCCHHHH----------hh-CCEEEEEECCEEEecCC
Confidence 457888888874 489999999999998 65 999999998 7765554
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=2.4e-26 Score=193.13 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=109.5
Q ss_pred EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcc
Q 026304 11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTR 72 (240)
Q Consensus 11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~ 72 (240)
++++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...++.. ...
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 6788888765 7899999999999999999999999999 9999972 2333332221111 011
Q ss_pred cCCCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccC
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKL 109 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p 109 (240)
....+|++|+..+++..++.++..+...+ ...++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 22358999988777766665544322100 11258899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++|+||||++ +..+.++|+++.++.+.|||++|||++ . ..+||++++|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~----------~~~~d~v~~l~~ 216 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I----------LDVADRIVHMED 216 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H----------HhhCCEEEEEEC
Confidence 9999999987 457889998887645899999999998 4 479999999986
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=216.97 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=114.4
Q ss_pred CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
.++|+++|+++.| ++|+||++++|++++|+||||||||||+ ++|+|+. ++|+++...++....+ ...
T Consensus 263 ~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELM-NCLFGVDKRAGGEIRLNGKDISPRSPLDAVK-KGM 340 (510)
T ss_pred CcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCEECCCCCHHHHHH-CCc
Confidence 3589999999877 8999999999999999999999999999 9999972 2333321111111111 235
Q ss_pred eEEEccC---ceecceecCcchhH----------------------------HHhh------------------------
Q 026304 77 SVVTHDG---AKLPCWALPELTSF----------------------------RQKL------------------------ 101 (240)
Q Consensus 77 ~~v~q~~---~~~~~~~~~~~~~~----------------------------~~~~------------------------ 101 (240)
+|++|+. .+++.+++.++..+ ...+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 8899862 34444444332211 0000
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
...++.+|++|||||||+ ...++++|+++++ .|.|||++|||++++ ..+|||+++|++ ++..
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~----------~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEI----------ITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HhhCCEEEEEECCEEEE
Confidence 112588999999999988 4578999999886 699999999999999 999999999998 7765
Q ss_pred cCC
Q 026304 175 CGK 177 (240)
Q Consensus 175 ~g~ 177 (240)
.++
T Consensus 490 ~~~ 492 (510)
T PRK09700 490 ILT 492 (510)
T ss_pred Eec
Confidence 443
No 236
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=6.6e-27 Score=224.41 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=125.4
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++|+| |+|+||+|++||.++|+|+||||||||+ |+|.|+ .++|.++..++....++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~-KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~-- 547 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL-KLLLGLYKPQQGRILLDGVDLNDIDLASLRR-- 547 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEeHHhcCHHHHHh--
Confidence 59999999999 8999999999999999999999999999 999997 45777777665543322
Q ss_pred CCeEEEccCceecceecCcchhHHH------------h-----------------------------------hchhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ------------K-----------------------------------LGDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~------------~-----------------------------------~~~~l~~ 107 (240)
..+||+|++.+|.. ++.+|..+.. . +++.+++
T Consensus 548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 548 QVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred heeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 35899999887764 3443332210 0 0122689
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|.++.. |+|+|+++|++..+ +.||||++|++ +++..|+.++
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti-----------~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTI-----------RSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHh-----------hhccEEEEccCCceeccCCHHH
Confidence 999999999999 2368888888864 79999999999987 88999999999 9999999876
Q ss_pred eee
Q 026304 181 FTL 183 (240)
Q Consensus 181 ~~~ 183 (240)
+-.
T Consensus 694 ll~ 696 (709)
T COG2274 694 LLA 696 (709)
T ss_pred HHH
Confidence 543
No 237
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-26 Score=197.62 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=113.3
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCceEEeeccc--hhcccCCC
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRNIAMIKSS--KDTRYAID 76 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~i~~~~~~--~~~~~~~~ 76 (240)
...+|+++|++++| ++|+||+|++|++++|+||||||||||+ ++|+|+. . .|. +...... ...+....
T Consensus 3 ~~~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~i 80 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLF-KALMGFVRLASGK-ISILGQPTRQALQKNLV 80 (272)
T ss_pred hhceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEECCEEhHHhhccceE
Confidence 34589999999988 7999999999999999999999999999 9999972 1 222 2111100 11111124
Q ss_pred eEEEccCceec--ceecCcch-----------------------hHHHhh-----------------------chhhhcc
Q 026304 77 SVVTHDGAKLP--CWALPELT-----------------------SFRQKL-----------------------GDDAYAK 108 (240)
Q Consensus 77 ~~v~q~~~~~~--~~~~~~~~-----------------------~~~~~~-----------------------~~~l~~~ 108 (240)
+|++|+..+.. ..++.++. .....+ ...++.+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 78887643210 01111110 000000 1225889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~ 181 (240)
|++|+||||++ ...+.++|+++++ +|.|||++|||++++ ..+||++++++.++...|+++.+
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~----------~~~~d~v~~~~G~i~~~g~~~~~ 228 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSV----------TEFCDYTVMVKGTVLASGPTETT 228 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEECCEEEeecCHHhc
Confidence 99999999988 4578899999876 689999999999999 89999998884488778877653
No 238
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1.3e-26 Score=201.29 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=116.8
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+. ++|.++...+.. ..+ ..
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl-~~L~gl~~~~G~I~i~g~~i~~~~~~-~lr-~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGDIQIDGVSWNSVPLQ-KWR-KA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEhhhCCHH-HHh-hh
Confidence 37899999998 8999999999999999999999999999 9999973 334333322211 112 23
Q ss_pred CeEEEccCceecceecCcchhHH------------Hh----------------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR------------QK----------------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~------------~~----------------------------------~~~~l~~~p 109 (240)
.+|++|++.+++. ++.+++... .. ++..++.+|
T Consensus 79 i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 5899998877753 444433210 00 011258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|+||||++ ...+.+.|+++. .++|||++||+++.+ . .||||++|++ ++...|+|+.+.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i----------~-~~dri~vl~~G~i~~~g~~~~l~ 224 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAM----------L-ECQRFLVIEENKVRQYDSIQKLL 224 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHH----------H-hCCEEEEecCCeEeecCCHHHHh
Confidence 9999999988 346777777763 479999999999988 5 4999999999 999999987653
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=3.1e-26 Score=190.09 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=107.3
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|+++.| ++++||+|++|++++|+|+||||||||+ ++|+|+. ++|.++.... ...+ ...+
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~~i~ 76 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLL-RILAGLSPPLAGRVLLNGGPLDFQR--DSIA-RGLL 76 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccc--HHhh-hheE
Confidence 4789999988 8999999999999999999999999999 9999973 2333322111 1111 2347
Q ss_pred EEEccCceecceecCcchhHHH-------------hh-----------------------chhhhccCcEEEEcCccC--
Q 026304 78 VVTHDGAKLPCWALPELTSFRQ-------------KL-----------------------GDDAYAKLDVIGIDEAQF-- 119 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~-------------~~-----------------------~~~l~~~p~lllLDEP~~-- 119 (240)
|++|...+++..++.++..+.. .+ +..++.+|++|+||||++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 8888776666666655443210 00 122589999999999988
Q ss_pred ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
+..+.+.|+++.+ .|.|+|++|||.... ..+|++++.+
T Consensus 157 D~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~----------~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGL----------SEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCchhh----------hhccceeEec
Confidence 4578888988876 689999999999888 8899999876
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=8.7e-26 Score=190.52 Aligned_cols=154 Identities=19% Similarity=0.152 Sum_probs=112.9
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc--hhcccC
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS--KDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~--~~~~~~ 74 (240)
.+.++|++++| ++++||++++||+++|+||||||||||+ ++|+|+.. ....+...... ......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLL-DAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHH-HHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 35677777776 7899999999999999999999999999 99999743 22223221111 111122
Q ss_pred CCeEEEccCceecceecCcchhHHH--------------------hh--------------------------chhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------------GDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------------~~~l~~~ 108 (240)
..+|++|+..+++.+++.++..+.. .+ ...++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 3588999887777666655443210 00 1115889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
|++|+||||++ +..+.++++++.+ .+.|+|++||++ +.+ ..+||++++|++ ++...
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~----------~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDL----------FRLFDRILLLSSGEIVYS 225 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHH----------HHhCCEEEEEeCCEEEec
Confidence 99999999987 4578899998876 589999999998 578 899999999998 76654
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-26 Score=214.56 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=117.4
Q ss_pred CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeecc------chhc
Q 026304 8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKS------SKDT 71 (240)
Q Consensus 8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~------~~~~ 71 (240)
.++|+++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+.. ..-.+..... ....
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV-QCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3589999999876 7899999999999999999999999999 99999832 2222221110 0011
Q ss_pred ccCCCeEEEccC---ceecceecCcchhHH------------------------Hhh-----------------------
Q 026304 72 RYAIDSVVTHDG---AKLPCWALPELTSFR------------------------QKL----------------------- 101 (240)
Q Consensus 72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~~------------------------~~~----------------------- 101 (240)
.....+|++|+. .+++.+++.++..+. ..+
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 112358999874 244444443322110 000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++|||||||+ +..++++|.++++ +|.|||++|||++++ ..+|||+++|++ ++.
T Consensus 416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~----------~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEV----------LGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEE
Confidence 112588999999999988 4578999999887 699999999999999 999999999998 887
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++.+
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 77766543
No 242
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=3.1e-26 Score=214.17 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=118.5
Q ss_pred ceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEE
Q 026304 9 AAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 9 ~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
++++++|+++..++++||+|.+||+++|+||||||||||+ ++|+|+. ++|+++...++....+ ...+|++
T Consensus 256 ~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~-~~i~~v~ 333 (501)
T PRK10762 256 VRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELM-KVLYGALPRTSGYVTLDGHEVVTRSPQDGLA-NGIVYIS 333 (501)
T ss_pred cEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHH-CCCEEec
Confidence 5899999998779999999999999999999999999999 9999972 2333332211111112 2358999
Q ss_pred ccC---ceecceecCcchhH-------------------------HHhh------------------------chhhhcc
Q 026304 81 HDG---AKLPCWALPELTSF-------------------------RQKL------------------------GDDAYAK 108 (240)
Q Consensus 81 q~~---~~~~~~~~~~~~~~-------------------------~~~~------------------------~~~l~~~ 108 (240)
|++ .+++.+++.++..+ ...+ +..++.+
T Consensus 334 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~ 413 (501)
T PRK10762 334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTR 413 (501)
T ss_pred CccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhC
Confidence 985 34444444332211 0000 1125889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|||||||+ +..+.++|+++++ +|.|||++|||++++ ..+||++++|++ ++...++++.+
T Consensus 414 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 414 PKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEV----------LGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HhhCCEEEEEECCEEEEEeccccC
Confidence 99999999988 4578999999986 699999999999999 999999999998 87776665543
No 243
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.8e-26 Score=195.38 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=117.7
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~ 69 (240)
++.+.++++++.| ++++||++++||+++|+||||||||||+ ++|+|+.. .|. ++.......
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4578999999998 8999999999999999999999999999 99999742 332 221110011
Q ss_pred hcccCCCeEEEccCceecceecCcchhHHH-----------h----h------------------------------chh
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-----------K----L------------------------------GDD 104 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-----------~----~------------------------------~~~ 104 (240)
.......+|++|+..++. .++.++..+.. . + +..
T Consensus 85 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred HhhhhceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 111223589999877663 55555443210 0 0 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--------c
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--------A 170 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--------~ 170 (240)
++.+|++|+||||++ +.++.++|+++. .+.|||++||+++++ ..+|||+++|+ +
T Consensus 164 l~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i----------~~~~d~v~~l~~~~~~~~~~ 231 (261)
T PRK14263 164 IATEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIALVTHNMQQA----------IRVADTTAFFSVDISQGTRT 231 (261)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HHhCCEEEEEecccccccCC
Confidence 588999999999988 457899998885 368999999999999 89999999995 5
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
+++..|+++.+
T Consensus 232 G~i~~~g~~~~~ 243 (261)
T PRK14263 232 GYLVEMGPTAQI 243 (261)
T ss_pred ceEEEeCCHHHH
Confidence 77777776543
No 244
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=5.1e-26 Score=189.65 Aligned_cols=145 Identities=20% Similarity=0.107 Sum_probs=106.1
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccc---hhcccCCCeEE
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSS---KDTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~---~~~~~~~~~~v 79 (240)
||+++|+++.| ++++||+|++||+++|+||||||||||+ ++|+|+. ..|. +...... ...+ ...+|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~g~~~~~~~~~-~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLL-RLIAGLLPPAAGT-IKLDGGDIDDPDVA-EACHYL 78 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCEeCcchhhH-hhcEEe
Confidence 79999999998 9999999999999999999999999999 9999972 2232 2111000 0112 224788
Q ss_pred EccCceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC--
Q 026304 80 THDGAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF-- 119 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~-- 119 (240)
+|...+++..++.++..+... + ...++.+|++|+||||++
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 876666655566554432110 0 112588999999999988
Q ss_pred ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
...++++|+++++ +|.|||++||+++++ .. |+++.+..
T Consensus 159 D~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~--~~~~~~~~ 200 (207)
T PRK13539 159 DAAAVALFAELIRAHLA-QGGIVIAATHIPLGL----------PG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhh----------cc--CcEEeecC
Confidence 4578899998876 699999999999998 54 88877753
No 245
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.6e-26 Score=196.18 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=111.0
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
++++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+. ...+ ..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~-~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLT-KLIQRFYVPENGRVLVDGHDLALADP-AWLR-RQ 77 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCeehHhcCH-HHHh-hc
Confidence 4678898887 7899999999999999999999999999 9999972 23332221111 1111 23
Q ss_pred CeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~~ 108 (240)
.+|++|+..+++ .++.+++.+ ... +...++.+
T Consensus 78 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 78 VGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 588898876553 244332211 000 01125889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++||||||++ +..+.+.|+++. .|.|||++|||++++ . .||++++|++ ++...|+++.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~----------~-~~d~v~~l~~G~i~~~~~~~~ 222 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTV----------K-NADRIIVMEKGRIVEQGSHDE 222 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEEcCHHH
Confidence 99999999988 457888888885 389999999999988 5 5999999999 8887777654
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=2.8e-26 Score=237.87 Aligned_cols=164 Identities=14% Similarity=0.081 Sum_probs=131.0
Q ss_pred CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304 8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~ 72 (240)
..+|+++||++.| ++++||+|++||+++|+||||||||||+ |+|+|+ .++|+++.. .....+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLl-kmL~Gll~ptsG~I~i~G~~i~~--~~~~~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF-KMLTGDTTVTSGDATVAGKSILT--NISDVH 2011 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECcc--hHHHHh
Confidence 4589999999988 7899999999999999999999999999 999997 234444321 111112
Q ss_pred cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD 110 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ 110 (240)
...+|++|...+++.+++.+++.+...+ +..++.+|+
T Consensus 2012 -~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2012 -QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred -hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2358999998888888887766542211 111588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTL 183 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~ 183 (240)
+|+||||++ ++.++++|+++++ +|+|||++||+++++ ..+|||+++|++ ++...|++..+..
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIILtTH~mee~----------e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHSMEEC----------EALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999988 5689999999877 599999999999999 999999999999 8888899877665
Q ss_pred eec
Q 026304 184 RKT 186 (240)
Q Consensus 184 ~~~ 186 (240)
++.
T Consensus 2160 ~~g 2162 (2272)
T TIGR01257 2160 KFG 2162 (2272)
T ss_pred HhC
Confidence 554
No 247
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-26 Score=195.53 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=110.7
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+.. ..+ ..
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~-~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILIDGHDVRDYTLA-SLR-RQ 77 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCCCEEEECCEEhhhCCHH-HHH-hh
Confidence 4678888876 7899999999999999999999999999 9999972 233332211111 112 23
Q ss_pred CeEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~ 108 (240)
.+|++|+..+++ .++.++..+. .. +...++.+
T Consensus 78 i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 78 IGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred EEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 478888876654 3443322110 00 01225889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++|+||||++ ...+.+.|+++. ++.|||++|||++++ .. ||++++|++ ++...|+++.
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~----------~~-~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTI----------EN-ADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH----------hh-CCEEEEecCCeEeeeCCHHH
Confidence 99999999988 457888888885 378999999999998 65 999999999 8877776554
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=1.4e-26 Score=196.74 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=109.5
Q ss_pred EEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccC
Q 026304 11 VTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYA 74 (240)
Q Consensus 11 l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~ 74 (240)
++++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ..| .++...+.. ..+ .
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTSGEILLDGVDIRDLNLR-WLR-S 77 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHH-HHHhccCCCCCCEEEECCEehhhcCHH-HHH-h
Confidence 4678888876 7899999999999999999999999999 9999972 233 322211111 111 2
Q ss_pred CCeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~ 107 (240)
..+|++|+..+++ .++.++..+ ... +...++.
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 3578888765543 233322111 000 0112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+||||++ +..+.+.|+++. +|.|||++|||++++ . +||++++|++ ++...|+++.
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~----------~-~~d~v~~l~~G~i~~~~~~~~ 223 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTI----------R-NADLIAVLQNGQVVEQGTHDE 223 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH----------h-hCCEEEEEECCEEEEeCCHHH
Confidence 999999999988 457888888875 589999999999998 6 8999999999 8877766543
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.93 E-value=4.8e-26 Score=213.77 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=120.3
Q ss_pred CceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEee-c-------c
Q 026304 8 PAAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMI-K-------S 67 (240)
Q Consensus 8 ~~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~-~-------~ 67 (240)
.+||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +... . .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~Gl~~p~~G~-i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS-KIIAGVLEPTSGE-VNVRVGDEWVDMTK 354 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeE-EEEecCCccccccc
Confidence 4589999999876 7899999999999999999999999999 9999983 2332 2210 0 0
Q ss_pred ---ch-hcccCCCeEEEccCceecceecCcchhHH------------------Hh--h----------------------
Q 026304 68 ---SK-DTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QK--L---------------------- 101 (240)
Q Consensus 68 ---~~-~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~--~---------------------- 101 (240)
.. .......+|++|+..+++.+++.+++.+. .. +
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 00 01112358999987766666665444320 00 0
Q ss_pred ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304 102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA- 170 (240)
Q Consensus 102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~- 170 (240)
+..++.+|++|||||||+ +..++++|++++++.|.|||++|||++++ ..+|||+++|++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~~d~i~~l~~G 504 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV----------LDVCDRAALMRDG 504 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence 111588999999999988 45789999998764689999999999999 999999999998
Q ss_pred eeeccCCcce
Q 026304 171 RCELCGKRAF 180 (240)
Q Consensus 171 ~~~~~g~~~~ 180 (240)
++...|+++.
T Consensus 505 ~i~~~g~~~~ 514 (520)
T TIGR03269 505 KIVKIGDPEE 514 (520)
T ss_pred EEEEECCHHH
Confidence 8877776643
No 250
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.1e-26 Score=194.46 Aligned_cols=153 Identities=20% Similarity=0.137 Sum_probs=110.1
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~~ 75 (240)
-|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ..| .++...+. ......
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLI-NLLMRFYDPQKGQILIDGIDIRDISR--KSLRSM 78 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEeHHHcCH--HHHhhh
Confidence 37899999987 8899999999999999999999999999 9999973 223 22211111 111123
Q ss_pred CeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~~ 108 (240)
.+|++|+..+++. ++.++..+ ... +...++.+
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 4788888765543 33222111 000 01225899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
|++||||||++ +..+++.|+++. .+.|||++||+++++ . .||++++|++ ++...|+.+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~----------~-~~d~i~~l~~g~~~~~~~~~ 222 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTI----------K-NADKILVLDDGKIIEEGTHD 222 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH----------h-hCCEEEEEeCCeEEEeCCHH
Confidence 99999999987 457888888884 389999999999988 5 4999999998 777666544
No 251
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=7e-26 Score=193.77 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=115.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------hh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS-------KD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~-------~~ 70 (240)
+|+++|+++.| ++++||+|++||+++|+||||||||||+ ++|+|+. ..|. +...... ..
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEGH-IYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCccE-EEECCEEcccccccHH
Confidence 68999999988 8999999999999999999999999999 9999862 1232 2211111 11
Q ss_pred cccCCCeEEEccCceecceecCcchhHH--------------------Hh---------------------------hch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QK---------------------------LGD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~~ 103 (240)
......+|++|+..+++. ++.++..+. .. +..
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 112235899998776653 443332210 00 011
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
.++.+|++|+||||++ ...+.++|+++++ +.|||++||+++++ ..+||++++|++ ++...|
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~----------~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQA----------TRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHH----------HhhcCEEEEEECCeEEEeC
Confidence 2589999999999987 4578888888853 78999999999999 999999999998 888777
Q ss_pred Cccee
Q 026304 177 KRAFF 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
++..+
T Consensus 228 ~~~~~ 232 (250)
T PRK14266 228 LTDQI 232 (250)
T ss_pred CHHHH
Confidence 76543
No 252
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.3e-25 Score=193.80 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=117.3
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeec-------cc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIK-------SS 68 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~-------~~ 68 (240)
..+|+++|++++| ++++||+|++||+++|+||||||||||+ ++|+|+.. .|. +.... ..
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG~-i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEGE-IILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCCCcccE-EEEcCccccccccc
Confidence 4689999999998 8999999999999999999999999999 99999732 232 22110 00
Q ss_pred --hhcccCCCeEEEccCceecceecCcchhHH-------------H-------hh-------------------------
Q 026304 69 --KDTRYAIDSVVTHDGAKLPCWALPELTSFR-------------Q-------KL------------------------- 101 (240)
Q Consensus 69 --~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~-------------~-------~~------------------------- 101 (240)
........+|++|+..+++. ++.++..+. . ..
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 01112235889998766653 444333211 0 00
Q ss_pred --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
+..++.+|++|+||||++ ...+.++|+++++ +.|||++||+++++ ..+||++++|++ ++
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~----------~~~~d~i~~l~~G~i 238 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQA----------ARVSDYTAYMYMGEL 238 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHH----------HHhCCEEEEEECCEE
Confidence 112588999999999988 4578888888864 58999999999999 899999999999 88
Q ss_pred eccCCcce
Q 026304 173 ELCGKRAF 180 (240)
Q Consensus 173 ~~~g~~~~ 180 (240)
...|+++.
T Consensus 239 ~~~g~~~~ 246 (265)
T PRK14252 239 IEFGATDT 246 (265)
T ss_pred EEeCCHHH
Confidence 77776644
No 253
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=4.5e-26 Score=213.55 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=115.7
Q ss_pred CceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 8 PAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 8 ~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
.+||+++|+++..++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...++....+ ...+|+
T Consensus 266 ~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~~i~~v 343 (510)
T PRK15439 266 APVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELA-ETLYGLRPARGGRIMLNGKEINALSTAQRLA-RGLVYL 343 (510)
T ss_pred CceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEECCCCCHHHHHh-CCcEEC
Confidence 34899999997669999999999999999999999999999 9999972 2333332211111111 234788
Q ss_pred EccC---ceecceecCcchh----------------------HHHhh------------------------chhhhccCc
Q 026304 80 THDG---AKLPCWALPELTS----------------------FRQKL------------------------GDDAYAKLD 110 (240)
Q Consensus 80 ~q~~---~~~~~~~~~~~~~----------------------~~~~~------------------------~~~l~~~p~ 110 (240)
+|+. .+++.+++.++.. +...+ ...++.+|+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~ 423 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ 423 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence 8763 2344333322110 00000 112588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|||||||+ +..+.++|+++++ +|.|||++|||++++ ..+|||+++|++ ++...|++++
T Consensus 424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i----------~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEI----------EQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred EEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEEcccc
Confidence 999999988 4578999999987 699999999999999 999999999998 8876666543
No 254
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=3.7e-26 Score=191.76 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=106.0
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|+++.| ++|+||++++|++++|+||||||||||+ ++|+|+. ++|.++...++. ..+ ..
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~~ 79 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-KLLAGLYKPTSGSVLLDGTDIRQLDPA-DLR-RN 79 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCeEEECCEEhHHCCHH-HHH-hh
Confidence 7889999887 7899999999999999999999999999 9999973 223222111111 111 23
Q ss_pred CeEEEccCceecceecCcchhH-------------H---------Hh---------------h----------chhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSF-------------R---------QK---------------L----------GDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~-------------~---------~~---------------~----------~~~l~~~ 108 (240)
.+|++|+..+++ .++.++..+ . .. + ...++.+
T Consensus 80 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 578888876554 244332211 0 00 0 1125889
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
|++||||||++ ...++++|+++++ . .|||++|||+++. .+||++++|++ ++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~-----------~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLG-D-KTLIIITHRPSLL-----------DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-CEEEEEeCCHHHH-----------HhCCEEEEEeCCeEee
Confidence 99999999988 4578889988865 3 8999999999876 59999999988 6653
No 255
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=5e-26 Score=191.10 Aligned_cols=150 Identities=18% Similarity=0.088 Sum_probs=108.7
Q ss_pred EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|.++...+.. . ....
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~ 79 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL-LALFRLVELSSGSILIDGVDISKIGLH-D-LRSR 79 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhHhCCHH-H-Hhhh
Confidence 7899999987 7899999999999999999999999999 9999972 233332211111 1 1223
Q ss_pred CeEEEccCceecceecCcchhH---------------------HHh-------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSF---------------------RQK-------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~---------------------~~~-------------------------~~~~l~~~p 109 (240)
.+|++|+..+++. ++.++..+ ... +...++.+|
T Consensus 80 i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccc-hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 5888988765542 44332210 000 012258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++|+||||++ +..+.++|+++.+ +.|||++||+++++ .. ||++++|++ ++...|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTI----------ID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH----------hh-CCEEEEEECCeEEecCC
Confidence 9999999987 4578888888753 68999999999998 54 999999998 7765543
No 256
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=3e-26 Score=194.28 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=110.5
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
++++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|.++...+.. ..+ ...
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~v~~~g~~~~~~~~~-~~~-~~i 77 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-RLLFRFYDVSSGSILIDGQDIREVTLD-SLR-RAI 77 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEhhhCCHH-HHH-hhE
Confidence 4678888887 7899999999999999999999999999 9999973 233332221111 111 234
Q ss_pred eEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhccC
Q 026304 77 SVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAKL 109 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~p 109 (240)
+|++|+..+++ .++.++..+. .. +...++.+|
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 78888876554 2443322110 00 012258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
++||||||++ +..+.++|.++.+ |.|||++||+++++ .. ||++++|++ ++...|+++.
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~----------~~-~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTI----------VN-ADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH----------Hh-CCEEEEEECCEEEeeCCHHH
Confidence 9999999987 4578888888753 89999999999998 55 999999998 8877766544
No 257
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=212.33 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=117.3
Q ss_pred ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304 9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
..++++|+++.. ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...++....+ ...+|+
T Consensus 256 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~~~ 333 (501)
T PRK11288 256 VRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELM-KLLYGATRRTAGQVYLDGKPIDIRSPRDAIR-AGIMLC 333 (501)
T ss_pred cEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHH-HHHcCCCcCCCceEEECCEECCCCCHHHHHh-CCCEEc
Confidence 468999998765 8999999999999999999999999999 9999972 2333322111111111 234788
Q ss_pred EccC---ceecceecCcchhH-------------------------HHhh------------------------chhhhc
Q 026304 80 THDG---AKLPCWALPELTSF-------------------------RQKL------------------------GDDAYA 107 (240)
Q Consensus 80 ~q~~---~~~~~~~~~~~~~~-------------------------~~~~------------------------~~~l~~ 107 (240)
+|+. .+++.+++.+++.+ ...+ ...++.
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 8874 24444444333211 0000 111578
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|||||||+ +.+++++|.++++ +|.|||++|||++++ ..+||++++|++ ++...|++++
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~----------~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEV----------LGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HhhCCEEEEEECCEEEEEEcccc
Confidence 999999999988 4578999999987 699999999999999 999999999998 8887777654
Q ss_pred ee
Q 026304 181 FT 182 (240)
Q Consensus 181 ~~ 182 (240)
+.
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 43
No 258
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=9.4e-26 Score=187.01 Aligned_cols=134 Identities=16% Similarity=0.044 Sum_probs=101.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
||+++|++++| ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++.. .... .....
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~--~~~~-~~~~i 76 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLL-KLIAGLLNPEKGEILFERQSIKK--DLCT-YQKQL 76 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeeEEECCCcccc--CHHH-HHhhe
Confidence 58999999998 9999999999999999999999999999 9999972 23333321 1111 12235
Q ss_pred eEEEccCceecceecCcchhHHH-------h-------h-----------------------chhhhccCcEEEEcCccC
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ-------K-------L-----------------------GDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~-------~-------~-----------------------~~~l~~~p~lllLDEP~~ 119 (240)
+|++|+..+++..++.++..+.. . + ...++.+|++|+||||++
T Consensus 77 ~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 77 CFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred EEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 78998877766666665544321 0 0 112589999999999988
Q ss_pred ------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+..+.+.|+++++ .|.|||++||+.+++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~ 190 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPL 190 (200)
T ss_pred ccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhc
Confidence 4578899998876 689999999999887
No 259
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=196.48 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=115.2
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~ 69 (240)
.++|+++|+++.| ++++||+|.+|++++|+||||||||||+ ++|+|+.. .|. ++.......
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 4589999999998 8999999999999999999999999999 99999741 332 221100000
Q ss_pred hcccCCCeEEEccCceecceecCcchhHH--------------------------------H----------h-------
Q 026304 70 DTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------------------Q----------K------- 100 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------------------~----------~------- 100 (240)
.......+|++|+..+++. ++.++..+. . .
T Consensus 122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 1111235899988765432 333222110 0 0
Q ss_pred ----------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 101 ----------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 101 ----------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
+...++.+|++||||||++ +..+.++|+++++ +.|||++|||++++ ..+||+
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i----------~~~~d~ 268 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQA----------ARISDQ 268 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHH----------HHhcCE
Confidence 0122589999999999988 4578899998875 48999999999999 899999
Q ss_pred e-eeecc-eeeccCCccee
Q 026304 165 V-TKLTA-RCELCGKRAFF 181 (240)
Q Consensus 165 i-~~l~~-~~~~~g~~~~~ 181 (240)
+ ++|++ ++...|+++.+
T Consensus 269 i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 269 TAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEEecCCEEEEeCCHHHH
Confidence 7 56788 88877776543
No 260
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.6e-26 Score=183.76 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=128.1
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc-------
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS------- 68 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~------- 68 (240)
+.|+++|+.++| |++|||+-.+|+++.|+|.+||||||+| |||+=+ ..+|..+...+..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfL-RCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHH-HHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468999999999 9999999999999999999999999999 999765 2345544432211
Q ss_pred ---h--hcccCCCeEEEccCceecceecCcchhH--------------------HHh-----------------------
Q 026304 69 ---K--DTRYAIDSVVTHDGAKLPCWALPELTSF--------------------RQK----------------------- 100 (240)
Q Consensus 69 ---~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~--------------------~~~----------------------- 100 (240)
. +.|. ..++|||..+++..+|+.+|.-- ..+
T Consensus 84 d~~q~~r~Rs-~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a 162 (256)
T COG4598 84 DKRQLQRLRT-RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA 162 (256)
T ss_pred CHHHHHHHHH-HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH
Confidence 0 1122 23899999999999988766421 011
Q ss_pred hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
++..++.+|+++|+||||+ ..++++.++++++ +|+|.+++||.+.|+ ...++++++|++ .+.
T Consensus 163 IARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FA----------R~Vss~v~fLh~G~iE 231 (256)
T COG4598 163 IARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFA----------RDVSSHVIFLHQGKIE 231 (256)
T ss_pred HHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHH----------HhhhhheEEeecceec
Confidence 0223689999999999999 2478999999998 799999999999999 999999999999 999
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+|+++
T Consensus 232 E~G~P~qv 239 (256)
T COG4598 232 EEGPPEQV 239 (256)
T ss_pred ccCChHHH
Confidence 99999763
No 261
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.2e-25 Score=182.75 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=126.6
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc----------hhCCceEEeeccchhcc
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE----------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl----------~~~g~~i~~~~~~~~~~ 72 (240)
.||+++||+++. |++|||+|++||+.+|+||||||||||. ++|+|. .++|+++..+++..+.|
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa-~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLA-YTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHH-HHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 479999999875 8999999999999999999999999999 999995 57899999999988888
Q ss_pred cCCCeEEEccCceecceecCcchhH---------------HHhh-----------------------ch---------hh
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSF---------------RQKL-----------------------GD---------DA 105 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~---------------~~~~-----------------------~~---------~l 105 (240)
.+. .+.||.+.-++..++.+.+.. ...+ +| .+
T Consensus 81 ~Gi-fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 81 AGI-FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred cCC-EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 774 678898877766554432211 1000 11 14
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhc--cceeeecc-eeeccC
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLA--DTVTKLTA-RCELCG 176 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~a--d~i~~l~~-~~~~~g 176 (240)
+.+|++.+||||.+ .+.+.+.+.++++ .|.+++++||.-+.+ .+. |++.+|-+ +++..|
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~rll-----------~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQRLL-----------DYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHH-----------hhcCCCEEEEEECCEEEecC
Confidence 88999999999988 3467788888887 799999999998766 444 99999999 999888
Q ss_pred Ccc
Q 026304 177 KRA 179 (240)
Q Consensus 177 ~~~ 179 (240)
.++
T Consensus 228 ~~e 230 (251)
T COG0396 228 DPE 230 (251)
T ss_pred CHH
Confidence 883
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=4.2e-25 Score=178.17 Aligned_cols=137 Identities=18% Similarity=0.126 Sum_probs=101.0
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccC
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~ 83 (240)
|+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+. .....+.. .. + ...+|++|+.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~-~~----~-~~i~~~~q~~ 73 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF-RALAGLWPWGSGRIGM-PE----G-EDLLFLPQRP 73 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEE-CC----C-ceEEEECCCC
Confidence 4678888877 7999999999999999999999999999 9999973 22222322 11 1 2347889887
Q ss_pred ceecceecCcchhHH------------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 84 AKLPCWALPELTSFR------------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~------------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
.++ ..++.++..+. ..+...++.+|++++||||++ ...+.++++++ +.|+|++|||+
T Consensus 74 ~~~-~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~ 148 (166)
T cd03223 74 YLP-LGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP 148 (166)
T ss_pred ccc-cccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh
Confidence 654 44666665431 112445789999999999988 23455555443 68999999998
Q ss_pred hhhhcccchHHHHHhhccceeeecc
Q 026304 146 DYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 146 ~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+.. .+||++++|++
T Consensus 149 ~~~-----------~~~d~i~~l~~ 162 (166)
T cd03223 149 SLW-----------KFHDRVLDLDG 162 (166)
T ss_pred hHH-----------hhCCEEEEEcC
Confidence 765 69999999976
No 263
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=3.9e-25 Score=174.40 Aligned_cols=130 Identities=19% Similarity=0.140 Sum_probs=97.3
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCc
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGA 84 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~ 84 (240)
++++|++++| ++++||++++||+++|+||||||||||+ ++|+|+.. ..-.+... . + ...+|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~-~----~-~~i~~~~~--- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVTWG-S----T-VKIGYFEQ--- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEEC-C----e-EEEEEEcc---
Confidence 4678999887 8999999999999999999999999999 99999732 22222221 1 1 12366766
Q ss_pred eecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHH
Q 026304 85 KLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDI 158 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L 158 (240)
+.........+...++.+|+++++|||++ +..+.+.++++ +.|++++||+++++
T Consensus 71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~---------- 130 (144)
T cd03221 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFL---------- 130 (144)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHH----------
Confidence 22222333345667899999999999987 33566666554 46999999999999
Q ss_pred Hhhccceeeecc
Q 026304 159 IPLADTVTKLTA 170 (240)
Q Consensus 159 ~~~ad~i~~l~~ 170 (240)
..+||++++|++
T Consensus 131 ~~~~d~v~~l~~ 142 (144)
T cd03221 131 DQVATKIIELED 142 (144)
T ss_pred HHhCCEEEEEeC
Confidence 899999999875
No 264
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=2.4e-25 Score=184.21 Aligned_cols=133 Identities=19% Similarity=0.086 Sum_probs=98.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
|+++|+++.| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++.... ...+ ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLL-RILAGLLRPDSGEVRWNGTALAEQR--DEPH-RNIL 76 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccch--HHhh-hheE
Confidence 4788999988 8999999999999999999999999999 9999972 2333332221 1111 2347
Q ss_pred EEEccCceecceecCcchhHHHhh--------------------------------------chhhhccCcEEEEcCccC
Q 026304 78 VVTHDGAKLPCWALPELTSFRQKL--------------------------------------GDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~~~p~lllLDEP~~ 119 (240)
|++|...+++..++.++..+.... ...++.+|++|+||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 888877666666665554321100 112588999999999988
Q ss_pred ------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
...+.+.|.++++ .|.|||++||+....
T Consensus 157 ~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL 190 (198)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc
Confidence 4578889988876 689999999998655
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.1e-25 Score=210.27 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=112.3
Q ss_pred ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeecc------chhc
Q 026304 9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKS------SKDT 71 (240)
Q Consensus 9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~------~~~~ 71 (240)
.+|+++|+++.| ++++||++.+||+++|+||||||||||+ ++|+|+.. .|. +..... ....
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV-QALFGAYPGKFEGN-VFINGKPVDIRNPAQA 333 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCeE-EEECCEECCCCCHHHH
Confidence 489999999865 7899999999999999999999999999 99999832 332 222110 0011
Q ss_pred ccCCCeEEEccC---ceecceecCcchhH------------------------HHhh-----------------------
Q 026304 72 RYAIDSVVTHDG---AKLPCWALPELTSF------------------------RQKL----------------------- 101 (240)
Q Consensus 72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~------------------------~~~~----------------------- 101 (240)
.....+|++|+. .+++.+++.++..+ ...+
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 112358999874 24443333222111 0000
Q ss_pred -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
...++.+|++|||||||+ +..++++|+++++ +|.|||++|||++++ ..+||++++|++ ++.
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~----------~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEV----------LGLSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEE
Confidence 112578999999999988 4578889999887 699999999999999 999999999988 766
Q ss_pred ccCC
Q 026304 174 LCGK 177 (240)
Q Consensus 174 ~~g~ 177 (240)
...+
T Consensus 483 ~~~~ 486 (500)
T TIGR02633 483 GDFV 486 (500)
T ss_pred EEEc
Confidence 5443
No 266
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-25 Score=208.45 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=111.6
Q ss_pred CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
.++|+++|+++.+ ++++||++++||+++|+||||||||||+ ++|+|+. ++|+++...++....+ ...
T Consensus 248 ~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIV-ETLFGIREKSAGTITLHGKKINNHNANEAIN-HGF 325 (491)
T ss_pred CcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHH-HHHcCCCcCCccEEEECCEECCCCCHHHHHH-CCC
Confidence 4589999999887 9999999999999999999999999999 9999972 2333332211111111 224
Q ss_pred eEEEccCc---eecceecC-----cch--------------------hHHHh------------------------hchh
Q 026304 77 SVVTHDGA---KLPCWALP-----ELT--------------------SFRQK------------------------LGDD 104 (240)
Q Consensus 77 ~~v~q~~~---~~~~~~~~-----~~~--------------------~~~~~------------------------~~~~ 104 (240)
+|++|+.. +++.+++. ++. .+... ++..
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 405 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW 405 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence 67776531 22322211 000 00000 0112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|||||||+ +..+++++.++.+ +|.|||++|||++++ ..+|||+++|++ ++...++
T Consensus 406 l~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~----------~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPEL----------LGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHH----------HhhCCEEEEEECCEEEEEEc
Confidence 588999999999988 4578899999887 699999999999999 999999999988 7764443
No 267
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=1.1e-25 Score=217.59 Aligned_cols=153 Identities=21% Similarity=0.134 Sum_probs=118.4
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++||+++| |+|+||+|++||.++|+||||||||||+ ++|+|+ .++|.++..+++... | .
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLL-RLLLGFETPESGSVFYDGQDLAGLDVQAV-R-R 527 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcCcCCHHHH-H-h
Confidence 59999999998 8999999999999999999999999999 999997 356777666554332 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~ 108 (240)
..+|++|++.+|+. |+.+|..+.. . +++.++++
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 46999999988765 4544443210 0 01225899
Q ss_pred CcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ . ..+.+.|+++ ++|+|++||+++.+ ..||+|++|++ +++.+|+.+++
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i-----------~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTI-----------RNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHH-----------HcCCEEEEEECCEEEEECCHHHH
Confidence 99999999998 2 2455555443 57999999999887 56999999999 99989987654
No 268
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=1.7e-25 Score=232.07 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=130.6
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
+.|+++||++.| ++++||++++||+++|+||||||||||+ ++|+|+. ++|.++.. .....+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLL-kiLaGLl~PtsG~I~i~G~dI~~--~~~~~r- 1002 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTL-SILTGLLPPTSGTVLVGGKDIET--NLDAVR- 1002 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHH-HHHhcCCCCCceEEEECCEECcc--hHHHHh-
Confidence 479999999988 7899999999999999999999999999 9999982 34544421 111112
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l 111 (240)
...++++|+..+++.+|+.+++.+..++ +..++.+|++
T Consensus 1003 ~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 2358999999888888888776553221 0115889999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLR 184 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~ 184 (240)
|||||||+ +..++++|++++ +|+|||++|||++++ ..+||||++|++ ++..+|++..+..+
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea----------~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEA----------DLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999988 567999999984 489999999999999 899999999999 88889998776655
Q ss_pred ecC
Q 026304 185 KTE 187 (240)
Q Consensus 185 ~~~ 187 (240)
+..
T Consensus 1151 ~g~ 1153 (2272)
T TIGR01257 1151 FGT 1153 (2272)
T ss_pred cCC
Confidence 543
No 269
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=9.2e-25 Score=177.89 Aligned_cols=132 Identities=19% Similarity=0.070 Sum_probs=99.1
Q ss_pred cceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceec
Q 026304 14 NQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87 (240)
Q Consensus 14 ~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~ 87 (240)
.|++++| +++ +|++++|++++|+||||||||||+ ++|+|+. .++..+..... ..++++|...
T Consensus 4 ~~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~-------~i~~~~q~~~--- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAV-KILAGQLIPNGDNDEWDGI-------TPVYKPQYID--- 71 (177)
T ss_pred CCeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCcEEEECCE-------EEEEEcccCC---
Confidence 5778887 667 599999999999999999999999 9999973 22222322110 1356676543
Q ss_pred ceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304 88 CWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL 161 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ 161 (240)
+.........++..++.+|++++||||++ +..+.+.+.+++++.+.|||++|||++++ ..+
T Consensus 72 ---LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~----------~~~ 138 (177)
T cd03222 72 ---LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL----------DYL 138 (177)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH----------HHh
Confidence 22222333345566889999999999988 45688888888763348999999999999 889
Q ss_pred ccceeeecc
Q 026304 162 ADTVTKLTA 170 (240)
Q Consensus 162 ad~i~~l~~ 170 (240)
||++++|++
T Consensus 139 ~d~i~~l~~ 147 (177)
T cd03222 139 SDRIHVFEG 147 (177)
T ss_pred CCEEEEEcC
Confidence 999999987
No 270
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=1.4e-25 Score=213.04 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=119.3
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++++| ++|+||+|++|+.++|+||||||||||+ ++|+|+ .++|.++..++... .+.
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~--~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA-NLLTRFYDIDEGEILLDGHDLRDYTLAS--LRN 417 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHH-HHHHhccCCCCceEEECCEEhhhcCHHH--HHh
Confidence 59999999998 8999999999999999999999999999 999997 34555554443322 223
Q ss_pred CCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chhhh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDDAY 106 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~l~ 106 (240)
..+|++|++.+|+. |+.+|..+. ..+ .+.++
T Consensus 418 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 418 QVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred hceEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 46899999888764 444333321 000 12258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
++|++|+|||||+ ...+++.|.++. .++|+|++||+++.+ ..||+|++|++ ++...|+.+
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~-----------~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTI-----------EKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH-----------HhCCEEEEEECCEEEEeCCHH
Confidence 9999999999988 236777787764 368999999999876 67999999999 888888876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
++
T Consensus 564 ~l 565 (582)
T PRK11176 564 EL 565 (582)
T ss_pred HH
Confidence 54
No 271
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=1.5e-25 Score=192.79 Aligned_cols=156 Identities=16% Similarity=0.077 Sum_probs=113.4
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
.+|+++|++++| ++++||++++|++++|+|+||||||||+ ++|+|+. ++|+++...+.. ..+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~-~~~- 94 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS-LAFFRMVDIFDGKIVIDGIDISKLPLH-TLR- 94 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccCCCCCeEEECCEEhhhCCHH-HHh-
Confidence 479999999987 7899999999999999999999999999 9999972 234333222111 112
Q ss_pred CCCeEEEccCceecceecCcchhH---------H------------Hh-------------------------hchhhhc
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSF---------R------------QK-------------------------LGDDAYA 107 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~---------~------------~~-------------------------~~~~l~~ 107 (240)
...+|++|++.+++. ++.++... . .. +...++.
T Consensus 95 ~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 234788888765542 32211100 0 00 0122589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+||||++ ...+.++++++. ++.|||++||+++.+ .. |||+++|++ ++...|+++.
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~----------~~-~dri~~l~~G~i~~~g~~~~ 240 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTI----------LD-ADLVLVLSRGILVECDTPEN 240 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHH----------Hh-CCEEEEEECCEEEEeCCHHH
Confidence 999999999987 346778887763 479999999999998 64 999999999 8888887664
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 241 ~ 241 (257)
T cd03288 241 L 241 (257)
T ss_pred H
Confidence 4
No 272
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=5.2e-25 Score=186.32 Aligned_cols=149 Identities=13% Similarity=0.052 Sum_probs=106.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------CCceEEeeccc---hhcccCCCeEEEccCc--eecce
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------NGRNIAMIKSS---KDTRYAIDSVVTHDGA--KLPCW 89 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------~g~~i~~~~~~---~~~~~~~~~~v~q~~~--~~~~~ 89 (240)
++++||++++|++++|+||||||||||+ ++|+|+.. .|. +...... ...+....+|++|++. +.+.+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTC-LAILGLLPPGLTQTSGE-ILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCccCccccE-EEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5799999999999999999999999999 99999832 343 3221111 1111123589998863 33333
Q ss_pred ecCcchhH-------------------H------------Hh--------------hchhhhccCcEEEEcCccC-----
Q 026304 90 ALPELTSF-------------------R------------QK--------------LGDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 90 ~~~~~~~~-------------------~------------~~--------------~~~~l~~~p~lllLDEP~~----- 119 (240)
++.++..+ . .. ++..++.+|++|+||||++
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 33221100 0 00 0112588999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
...+.+.|++++++.|.|||++||+++++ ..+||++++|++ ++...|+++.+
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVV----------ARIADEVAVMDDGRIVERGTVKEI 213 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 34688889988764589999999999999 899999999999 88877776543
No 273
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=8.4e-25 Score=182.72 Aligned_cols=142 Identities=19% Similarity=0.076 Sum_probs=100.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~ 98 (240)
|+||||++++||.+||+|+||||||||| |+|+|... .|+-...-........ + ..+.+.+|..+|..+.
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~v~G~v~~li~l---g-----~Gf~pelTGreNi~l~ 113 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVKVTGKVAPLIEL---G-----AGFDPELTGRENIYLR 113 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHH-HHHhCccCCCCceEEEcceEehhhhc---c-----cCCCcccchHHHHHHH
Confidence 7899999999999999999999999999 99999732 2321111000000000 0 1112334444443332
Q ss_pred Hhh------------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304 99 QKL------------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA 130 (240)
Q Consensus 99 ~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l 130 (240)
..+ +-....+|++||+||..+ ++...+.+.++
T Consensus 114 ~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 114 GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 221 111367999999999844 56788888888
Q ss_pred HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
.+ ++.|||+||||++.+ .++|||++.|++ ++...|++++..
T Consensus 194 ~~-~~~tiv~VSHd~~~I----------~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 194 VE-KNKTIVLVSHDLGAI----------KQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HH-cCCEEEEEECCHHHH----------HHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 76 579999999999999 999999999999 999999887543
No 274
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=2.3e-25 Score=187.93 Aligned_cols=139 Identities=19% Similarity=0.099 Sum_probs=100.0
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~ 77 (240)
+.+++++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++.... .. ..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~------~~-~~ 94 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLL-RLLAGIYPPDSGTVTVRGRVSSLLG------LG-GG 94 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEchhhc------cc-cc
Confidence 6788999988 9999999999999999999999999999 9999972 2232221000 00 00
Q ss_pred EEEccCceecceecCcchhH-------------------HH-----------------------hhchhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSF-------------------RQ-----------------------KLGDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~~~l~~~p~lllLD 115 (240)
+ .+..++.++..+ .. .+...++.+|++||||
T Consensus 95 ~-------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 95 F-------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred C-------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 111111111110 00 0122368999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
||++ +..+.+.|+++++ .|.|||++|||++++ ..+||++++|++ ++...
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDPSSI----------KRLCDRALVLEKGKIRFD 223 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEec
Confidence 9987 4578899998876 589999999999999 899999999998 76543
No 275
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=1.9e-25 Score=212.61 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=120.7
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.++++|++++| ++|+||++++||.++|+|+||||||||+ ++|.|+ .++|.++..+++.. .+..
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~--l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLA-SLLMGYYPLTEGEIRLDGRPLSSLSHSV--LRQG 416 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEhhhCCHHH--HHhh
Confidence 59999999998 8999999999999999999999999999 999997 34555555443322 2234
Q ss_pred CeEEEccCceecceecCcchhHHH---------------------hh-------------------------chhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ---------------------KL-------------------------GDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~-------------------------~~~l~~~p 109 (240)
.+|++|++.+|+. |+.+|..+.. .+ .+.++.+|
T Consensus 417 i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 417 VAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred eEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 6899999988875 5554443211 00 12258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|+|||||+ ...+.+.|+++.+ ++|+|++||+++.+ ..||+|++|++ ++...|+++++
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l-----------~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTI-----------VEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHH-----------HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999988 2367778877754 68999999999876 67999999999 99888887654
No 276
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=188.37 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=96.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH-
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF- 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~- 97 (240)
++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +.... . ..+++|...+.+.+++.++..+
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTLl-k~L~Gl~~p~~G~-I~~~g-~-------~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLS-NIIGGSLSPTVGK-VDRNG-E-------VSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceE-EEECC-E-------EeEEecccCCCCCCcHHHHHHHH
Confidence 5799999999999999999999999999 9999972 2232 21110 0 0111121111111122111110
Q ss_pred ------------------H-----------------------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304 98 ------------------R-----------------------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNA 130 (240)
Q Consensus 98 ------------------~-----------------------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l 130 (240)
. ..+...++.+|++||||||++ +..+++.|.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 0 001223688999999999987 34788888888
Q ss_pred HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
.+ .|.|||++||+++++ ..+||++++|++ ++...|+++.+
T Consensus 190 ~~-~g~tiIiisH~~~~i----------~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 190 KE-QNKTIFFVSHNLGQV----------RQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HH-CCCEEEEEcCCHHHH----------HHHcCEEEEEECCEEEEeCCHHHH
Confidence 75 689999999999999 899999999998 88777776543
No 277
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=2.4e-25 Score=187.68 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=105.9
Q ss_pred CCceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchh
Q 026304 7 KPAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKD 70 (240)
Q Consensus 7 ~~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~ 70 (240)
..++++++|+++.| ++++||+|++|++++|+||||||||||+ ++|+|+. ..| .++..... .
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~--~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLLDGKPISQYEH--K 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCCchHHcCH--H
Confidence 34689999999987 7899999999999999999999999999 9999972 223 32221111 1
Q ss_pred cccCCCeEEEccCceecceecCcchhH----------------------HHhh-------------------------ch
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSF----------------------RQKL-------------------------GD 103 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~----------------------~~~~-------------------------~~ 103 (240)
.+....+|++|+..+++ .++.++..+ ...+ ..
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 11223578888765543 233222210 0000 11
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++.+|++||||||++ +..+.+.|+++.+ +.|||++|||++++ .. ||++++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~-~d~i~~l~~ 223 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTV----------ER-ADQILVLDG 223 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH----------Hh-CCEEEEecC
Confidence 2589999999999988 4578888888764 58999999999998 64 999999976
No 278
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=1.3e-25 Score=217.52 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=121.7
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++|++++| |+|+||+|++||.++|+||||||||||+ ++|.|+ .++|.++..++.... | .
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~l~~~~~~~l-r-~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGSVLLDGVDIRQIDPADL-R-R 539 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHH-H-h
Confidence 59999999998 8899999999999999999999999999 999997 345655555443222 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~ 107 (240)
..+|++|++.+|+. |+.+|..+.. . +++.++.
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 35899999887764 4444332210 0 0122689
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++ ++...|+.++
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~-----------~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-----------DLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-----------HhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999988 3467788877753 78999999999876 68999999999 9998998776
Q ss_pred eee
Q 026304 181 FTL 183 (240)
Q Consensus 181 ~~~ 183 (240)
+..
T Consensus 686 Ll~ 688 (694)
T TIGR03375 686 VLE 688 (694)
T ss_pred HHH
Confidence 543
No 279
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=2e-25 Score=212.34 Aligned_cols=155 Identities=15% Similarity=0.053 Sum_probs=119.7
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~~ 76 (240)
.++++||++.| |+|+||++++|+.++|+||||||||||+ ++|.|+. ++|.++..+++... | +..
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~-~lL~g~~p~~G~I~i~g~~i~~~~~~~l-r-~~i 425 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL-NALLGFLPYQGSLKINGIELRELDPESW-R-KHL 425 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCcEEEECCEecccCCHHHH-H-hhe
Confidence 59999999755 8999999999999999999999999999 9999973 35555555443322 2 246
Q ss_pred eEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhccC
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAKL 109 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~p 109 (240)
+|++|++.+|+. |+.+|..+.. .+ ++.++++|
T Consensus 426 ~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 426 SWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred EEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 899999988875 5554443320 00 12258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|+|||||+ ...+.+.|.++. .++|+|++||+++.+ ..||+|++|++ ++...|+.+++
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i-----------~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDL-----------AQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHH-----------HhCCEEEEEeCCeEeecCCHHHH
Confidence 9999999998 236777777775 478999999999877 67999999999 88888887654
No 280
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=1e-24 Score=207.12 Aligned_cols=150 Identities=16% Similarity=0.036 Sum_probs=115.1
Q ss_pred CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304 8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.++++++|++++| |+++||+|.+||+++|+||||||||||+ ++|+|+. ..|. +.. . . ..+|++|
T Consensus 338 ~~~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLl-k~L~Gl~~p~~G~-I~~-~------~-~i~y~~Q 407 (590)
T PRK13409 338 ETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA-KLLAGVLKPDEGE-VDP-E------L-KISYKPQ 407 (590)
T ss_pred ceEEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEE-e------e-eEEEecc
Confidence 4589999999998 8999999999999999999999999999 9999973 2332 221 1 1 2467888
Q ss_pred cCceecceecCcchhHHH--------------h-----------------------hchhhhccCcEEEEcCccC-----
Q 026304 82 DGAKLPCWALPELTSFRQ--------------K-----------------------LGDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--------------~-----------------------~~~~l~~~p~lllLDEP~~----- 119 (240)
+......+++.+++.+.. . ++..++.+|++|||||||+
T Consensus 408 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 408 YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred cccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 765555555554433210 0 0122588999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCC
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGK 177 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~ 177 (240)
+..+.++|++++++.|.|||++|||++++ ..+|||+++|+++....|.
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~----------~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMI----------DYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEcCcceeeee
Confidence 45789999999875689999999999999 8999999999885444443
No 281
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=1.8e-25 Score=216.92 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=117.0
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++|++++| |+|+||+|++||.++|+||||||||||+ ++|+|+ .++|.++..++.... | +
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~ 553 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA-KLVAGLYQPWSGEILFDGIPREEIPREVL-A-N 553 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEeHHHCCHHHH-H-h
Confidence 69999999998 8999999999999999999999999999 999997 345555544433222 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~ 107 (240)
..+|++|++.+|+. |+.+|..+.. . +++.+++
T Consensus 554 ~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 554 SVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred heeEEecCChhhhc-cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 35899999888764 4444432210 0 0122589
Q ss_pred cCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ . ..+.+.|+ + .++|+|++||+++.+ ..||||++|++ +++.+|++++
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~---~-~~~T~IiitHrl~~i-----------~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLR---R-RGCTCIIVAHRLSTI-----------RDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHH---h-cCCEEEEEecCHHHH-----------HhCCEEEEEeCCEEEEecCHHH
Confidence 999999999998 2 24555544 3 579999999999887 56999999999 9998998776
Q ss_pred ee
Q 026304 181 FT 182 (240)
Q Consensus 181 ~~ 182 (240)
+.
T Consensus 698 Ll 699 (710)
T TIGR03796 698 LW 699 (710)
T ss_pred HH
Confidence 43
No 282
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.92 E-value=8.2e-25 Score=206.96 Aligned_cols=152 Identities=19% Similarity=0.054 Sum_probs=111.7
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEE
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
..+||+++||+++| ++++||+|++|++++|+||||||||||| ++|+|+. ..+-.+... . . ...+|+
T Consensus 3 ~~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLl-k~i~G~~~p~~G~i~~~-~----~-~~i~~v 75 (556)
T PRK11819 3 AQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFEGEARPA-P----G-IKVGYL 75 (556)
T ss_pred ccEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEec-C----C-CEEEEE
Confidence 35699999999988 7899999999999999999999999999 9999973 222223211 1 1 124788
Q ss_pred EccCceecceecCcchhHH------------------------------------------------Hh-----------
Q 026304 80 THDGAKLPCWALPELTSFR------------------------------------------------QK----------- 100 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~------------------------------------------------~~----------- 100 (240)
+|++.+++.+++.+++.+. .+
T Consensus 76 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 155 (556)
T PRK11819 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP 155 (556)
T ss_pred ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC
Confidence 9887766655555443210 00
Q ss_pred ------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHH
Q 026304 101 ------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVL 156 (240)
Q Consensus 101 ------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~ 156 (240)
+...++.+|++||||||++ ...+.++|+++ +.|||++|||++++
T Consensus 156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~-------- 223 (556)
T PRK11819 156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFL-------- 223 (556)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHH--------
Confidence 0112588999999999988 23455555543 35999999999999
Q ss_pred HHHhhccceeeecc-eee-ccCCcc
Q 026304 157 DIIPLADTVTKLTA-RCE-LCGKRA 179 (240)
Q Consensus 157 ~L~~~ad~i~~l~~-~~~-~~g~~~ 179 (240)
..+||+|++|++ ++. +.|+.+
T Consensus 224 --~~~~d~i~~l~~g~i~~~~g~~~ 246 (556)
T PRK11819 224 --DNVAGWILELDRGRGIPWEGNYS 246 (556)
T ss_pred --HhhcCeEEEEeCCEEEEecCCHH
Confidence 899999999998 764 666654
No 283
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.7e-25 Score=205.71 Aligned_cols=149 Identities=12% Similarity=0.131 Sum_probs=106.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
||+++|++++| ++++||+|++|++++|+||||||||||| ++|+|+. ..|. +... . + ...+|++|.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~-i~~~-~----~-~~i~~~~q~ 72 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFM-KILGGDLEPSAGN-VSLD-P----N-ERLGKLRQD 72 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEec-C----C-CEEEEEecc
Confidence 58999999998 8999999999999999999999999999 9999973 2333 2211 1 0 113677776
Q ss_pred CceecceecCcchhH---------------------------------------------------HH------------
Q 026304 83 GAKLPCWALPELTSF---------------------------------------------------RQ------------ 99 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~---------------------------------------------------~~------------ 99 (240)
..+++.+++.++..+ ..
T Consensus 73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 544443333222110 00
Q ss_pred ------------hhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304 100 ------------KLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL 161 (240)
Q Consensus 100 ------------~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ 161 (240)
.+...++.+|++|||||||+ +..+.++|. + .|.|||++|||++++ ..+
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~~~tiiivsHd~~~~----------~~~ 218 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---E-RNSTMIIISHDRHFL----------NSV 218 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---h-CCCeEEEEeCCHHHH----------Hhh
Confidence 00122588999999999988 234444443 3 589999999999999 899
Q ss_pred ccceeeecc-ee-eccCCcce
Q 026304 162 ADTVTKLTA-RC-ELCGKRAF 180 (240)
Q Consensus 162 ad~i~~l~~-~~-~~~g~~~~ 180 (240)
||++++|++ ++ .+.|+++.
T Consensus 219 ~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 219 CTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred cceEEEEeCCEEEEecCCHHH
Confidence 999999999 77 46776653
No 284
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=208.57 Aligned_cols=160 Identities=16% Similarity=0.084 Sum_probs=123.5
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD- 70 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~- 70 (240)
+||+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+ .++|+++...+....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 489999999987 7899999999999999999999999999 999997 234554443322211
Q ss_pred -cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhc
Q 026304 71 -TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYA 107 (240)
Q Consensus 71 -~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~ 107 (240)
.+....+|++|+..+++..++.++..+... + ...++.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 112345899999888877666554432110 0 112588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+||||+. ++.+.++++++.+ .|.|++++||+++.+ ..|||+++|++ ++..+|++++
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVA-----------AQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHH-----------HhCCEEEEEECCEEEeecCccc
Confidence 999999999987 4578899998876 699999999999977 46999999999 8888887764
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
.
T Consensus 230 ~ 230 (648)
T PRK10535 230 K 230 (648)
T ss_pred c
Confidence 3
No 285
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.91 E-value=3.7e-25 Score=214.68 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=118.4
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++|++|+| |+|+||+|++|+.++|+||||||||||+ ++|.|+ .++|.++..+++... | ..
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~~ 549 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA-KLLVGFFQARSGEILLNGFSLKDIDRHTL-R-QF 549 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCCcEEEECCEEHHHcCHHHH-H-Hh
Confidence 59999999998 8999999999999999999999999999 999997 345555554443322 2 23
Q ss_pred CeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhhhc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDAYA 107 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l~~ 107 (240)
.+|++|++.+|+. |+.+|..+.. .+ ++.+++
T Consensus 550 i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 550 INYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred eEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 5899999888765 4444433210 00 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|+++ .++|+|++||+++.+ ..||+|++|++ ++...|+.++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~-----------~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVA-----------KQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHH-----------HcCCEEEEEECCEEEEECCHHH
Confidence 999999999998 23566777653 378999999999876 67999999999 8888888765
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 695 L 695 (708)
T TIGR01193 695 L 695 (708)
T ss_pred H
Confidence 4
No 286
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=7.9e-25 Score=210.16 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=118.6
Q ss_pred EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc-hhcccCCCeEEEcc
Q 026304 13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS-KDTRYAIDSVVTHD 82 (240)
Q Consensus 13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~-~~~~~~~~~~v~q~ 82 (240)
++|+++.| |+|+|+++++||+++|+||||||||||| ++|+|... .|. +...... .....+..+|++|+
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL-~iLaG~~~~~~~sG~-I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLL-NALAGRIQGNNFTGT-ILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCceeEE-EEECCEECchhhccceEEECcc
Confidence 45666666 9999999999999999999999999999 99999732 232 2211110 01111235899999
Q ss_pred CceecceecCcchhHHHhh--------------------------------------------------chhhhccCcEE
Q 026304 83 GAKLPCWALPELTSFRQKL--------------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~l~~~p~ll 112 (240)
..+++.+|+.+++.+...+ +.+++.+|++|
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 8888877777665442100 01158899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||++ ...+++.|+++++ +|+|||+++|+++ .+ .++||++++|++ ++.+.|+++.+
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i----------~~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRV----------YQMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHH----------HHhhceEEEecCCcEEEECCHHHH
Confidence 9999988 4579999999987 6999999999998 47 799999999999 99999987543
No 287
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.1e-24 Score=171.26 Aligned_cols=137 Identities=23% Similarity=0.193 Sum_probs=100.5
Q ss_pred EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccc-----hhcccCCCeEEEc
Q 026304 13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSS-----KDTRYAIDSVVTH 81 (240)
Q Consensus 13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~-----~~~~~~~~~~v~q 81 (240)
++++++.| ++++||++++|++++|+||||||||||+ ++|+|+.. ....+...... ........+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll-~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLL-RAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 56777777 8999999999999999999999999999 99999732 11122211100 0111123467777
Q ss_pred cCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH
Q 026304 82 DGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV 155 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~ 155 (240)
+.........+...++.+|++++||||++ ...+.+.+.++.+ .+.|++++||+++++
T Consensus 81 ---------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~------- 143 (157)
T cd00267 81 ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELA------- 143 (157)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH-------
Confidence 22222333334566789999999999987 4578888888876 478999999999999
Q ss_pred HHHHhhccceeeecc
Q 026304 156 LDIIPLADTVTKLTA 170 (240)
Q Consensus 156 ~~L~~~ad~i~~l~~ 170 (240)
..+||+++.+++
T Consensus 144 ---~~~~d~i~~l~~ 155 (157)
T cd00267 144 ---ELAADRVIVLKD 155 (157)
T ss_pred ---HHhCCEEEEEeC
Confidence 888999998864
No 288
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=7.4e-25 Score=206.77 Aligned_cols=156 Identities=21% Similarity=0.143 Sum_probs=118.1
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++++| ++|+||++++|+.++|+||||||||||+ ++|+|+. ++|.++...+... ...
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~i~~~~~~~--~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLA-RLIVGIWPPTSGSVRLDGADLKQWDRET--FGK 392 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEehhhCCHHH--Hhh
Confidence 69999999988 8999999999999999999999999999 9999972 3444444333221 122
Q ss_pred CCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~~ 107 (240)
..+|++|++.+++. ++.+|..+. ..+ ++.+++
T Consensus 393 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 45899999887754 444433210 000 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ .+.+.+.|.++.. .++|+|++||+++.+ ..||+|++|++ ++...|++++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-----------GCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEeeCCHHH
Confidence 999999999988 3467788888764 589999999999865 67999999999 8888887654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 540 l 540 (544)
T TIGR01842 540 V 540 (544)
T ss_pred H
Confidence 3
No 289
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=184.41 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=119.6
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hcccCCCeEEEccCceecceecC
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DTRYAIDSVVTHDGAKLPCWALP 92 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~~~~~~~~v~q~~~~~~~~~~~ 92 (240)
+++|..+.-.+++|.|+||||||||+ ++|+|+. ++|.-+....... ....+.+|||||+..+|+.+++.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTsli-n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLI-NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHH-HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 67888888679999999999999999 9999982 3444333221111 11122359999999999999999
Q ss_pred cchhHHHhh------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304 93 ELTSFRQKL------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA 130 (240)
Q Consensus 93 ~~~~~~~~~------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l 130 (240)
.|+.+..+. +..++.+|++|+||||.+ ..+++..|.++
T Consensus 95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL 174 (352)
T COG4148 95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL 174 (352)
T ss_pred cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence 888764321 233789999999999966 35899999999
Q ss_pred HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
.++.++.|+.|||.++++ .++||+|++|++ ++.+.|+.++.-
T Consensus 175 ~~e~~IPIlYVSHS~~Ev----------~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 175 RDEINIPILYVSHSLDEV----------LRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred HHhcCCCEEEEecCHHHH----------HhhhheEEEecCCeEEecCcHHHHh
Confidence 998899999999999999 999999999999 999999876543
No 290
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.91 E-value=5.2e-25 Score=213.68 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=116.1
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++||+++| |+|+||++++||.++|+||||||||||+ ++|.|+ .++|+++..++.... +
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~l--r 554 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPTGGQVLLDGVPLVQYDHHYL--H 554 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHH--H
Confidence 59999999998 7899999999999999999999999999 999997 245555544433221 2
Q ss_pred CCCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~ 106 (240)
...+|++|++.+|+. |+.+|..+. ..+ ++.++
T Consensus 555 ~~i~~v~Q~~~lF~g-TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 555 RQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred hhceEEecCcccccc-CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 235899999888764 444433221 000 12258
Q ss_pred ccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 107 AKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 107 ~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|++|+|||||+ .+ +..+.+.+.....++|+|++||+++.+ ..||+|++|++ +++..|+++++.
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i-----------~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV-----------ERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHH-----------HhCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999999998 22 222233332222579999999999876 66999999999 999889877643
No 291
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=2.8e-24 Score=198.84 Aligned_cols=152 Identities=15% Similarity=0.046 Sum_probs=106.5
Q ss_pred CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCe
Q 026304 8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~ 77 (240)
.+|++++|+++.| |+++||+|++|++++|+||||||||||+ ++|+|+. ..|. +.......
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL-kiLaGLl~P~sGe-I~I~G~~~-------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS-NLIAGVTMPNKGT-VDIKGSAA-------- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCceE-EEECCEee--------
Confidence 3589999998876 7899999999999999999999999999 9999973 1222 21110000
Q ss_pred EEEccCceecceecCcchhH------------------------------------------HHhhchhhhccCcEEEEc
Q 026304 78 VVTHDGAKLPCWALPELTSF------------------------------------------RQKLGDDAYAKLDVIGID 115 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~l~~~p~lllLD 115 (240)
++.+...+.+.+++.++..+ +..++..++.+|++||||
T Consensus 89 ~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 89 LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00000001111111111100 000123368999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||++ +..+++.|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i----------~~l~DrIivL~~GkIv~~G~~~e 229 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQV----------KSFCTKALWLHYGQVKEYGDIKE 229 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEECCHHH
Confidence 9988 3468888988876 689999999999999 899999999998 8888887654
No 292
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.7e-24 Score=179.70 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=108.0
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--------CCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--------NGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--------~g~~i~~~~~~~~~~~~ 74 (240)
+++|+++|+++.| |+|+||+|++||.++|+||||||||||| ++++|... .|+......-..+.|.
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL-~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk- 106 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLL-SLLTGEHPPSSGDVTLLGRRFGKGETIFELRK- 106 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHH-HHHhcccCCCCCceeeeeeeccCCcchHHHHH-
Confidence 3579999999999 9999999999999999999999999999 99999733 2222211111111121
Q ss_pred CCeEEEcc--C--------------ceecceecCc-----c-----hhHHH-----------------------hhchhh
Q 026304 75 IDSVVTHD--G--------------AKLPCWALPE-----L-----TSFRQ-----------------------KLGDDA 105 (240)
Q Consensus 75 ~~~~v~q~--~--------------~~~~~~~~~~-----~-----~~~~~-----------------------~~~~~l 105 (240)
.+|+|+.. . ..|....++. . ..+.. .+++.+
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL 186 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL 186 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH
Confidence 23444310 0 0011111111 0 00000 113447
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhc-CCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADH-DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~-~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
+.+|++||||||+. +..+.+.|.+++.. .+.++|+|||..+++ ....++++.+++ +++..|
T Consensus 187 v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi----------~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI----------PPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc----------ccccceEEEeeCCceeecc
Confidence 99999999999977 45788889888762 378999999999999 899999999998 777655
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.91 E-value=9.9e-25 Score=207.64 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=118.2
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.++++|++++| ++|+||++++|+.++|+|+||||||||+ ++|.|+ .++|.++..++... .+..
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~p~~G~I~i~g~~i~~~~~~~--~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRAS--LRRN 410 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEhhhCCHHH--HHhh
Confidence 59999999998 8999999999999999999999999999 999997 34555555443322 2234
Q ss_pred CeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~ 108 (240)
.+|++|++.+|+. |+.+|..+.. .+ ++.++++
T Consensus 411 i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 411 IAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred eEEEecCcccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 6899999888764 4444332210 00 1225899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++++|||||+ ...+++.|.++. .++|+|++||+++.+ +.||+|++|++ ++...|+.+++
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~-----------~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTV-----------RNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHH-----------HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999988 235777777664 379999999999876 67999999998 88877776544
No 294
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-24 Score=198.27 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=122.9
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~ 75 (240)
..|+++|++++| |+++||+|++||.+||+|+|||||||++ |+|.++ .++|+++....... -++.
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTil-r~LlrF~d~sG~I~IdG~dik~~~~~S--lR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTIL-RLLLRFFDYSGSILIDGQDIKEVSLES--LRQS 426 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHH-HHHHHHhccCCcEEECCeeHhhhChHH--hhhh
Confidence 369999999999 8999999999999999999999999999 999886 46777776654332 2235
Q ss_pred CeEEEccCceecceecCcchhHH-------------H---------hh----------------c---------hhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR-------------Q---------KL----------------G---------DDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~-------------~---------~~----------------~---------~~l~~~ 108 (240)
+++|||+..+|.+. +..|..+. . ++ + +.++.+
T Consensus 427 Ig~VPQd~~LFndT-Il~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDT-ILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred eeEeCCcccccchh-HHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 69999999988763 33222211 0 00 1 125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|+++++||||+ -.++++.+.... .++|+|++-|+++.+ .-||+|+++++ ++...|+..++
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll-----------~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLL-----------KDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhH-----------hcCCEEEEEECCeeEEeccHHHH
Confidence 99999999999 236788887743 589999999999987 78999999999 88888887654
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 573 l 573 (591)
T KOG0057|consen 573 L 573 (591)
T ss_pred h
Confidence 4
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=184.90 Aligned_cols=160 Identities=14% Similarity=0.043 Sum_probs=117.5
Q ss_pred ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec
Q 026304 9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK 66 (240)
Q Consensus 9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~ 66 (240)
++++++|+++.| ++||||+|++||+++|+|+|||||||+- |+|.|+ .++|+++..++
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhhcc
Confidence 478999999877 5689999999999999999999999999 999998 35666655443
Q ss_pred cchhc-cc----CCCeEEEccCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCC
Q 026304 67 SSKDT-RY----AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDG 135 (240)
Q Consensus 67 ~~~~~-~~----~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g 135 (240)
..... +. ...+.-......++. .+.+....+-.++..++.+|+++++|||++ +.+++++|.++.++.|
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPh-elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPH-ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCc-ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 21111 00 001111111111221 122222223334566899999999999988 5689999999998889
Q ss_pred CEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 136 KTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 136 ~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
.|.+++|||+..+ ..+||||.+|.. +++..|+.++
T Consensus 161 lt~lFIsHDL~vv----------~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 161 LTYLFISHDLSVV----------RYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred CeEEEEEEEHHhh----------hhhcccEEEEecCceeEecCHHH
Confidence 9999999999999 999999999999 8888887654
No 296
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=1.1e-24 Score=206.62 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=123.8
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++|++++| ++|+||++++||.++|+|||||||||++ ++|.|+ .++|.++..++.... |. .
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~-~LL~r~~~~~~G~I~idg~dI~~i~~~~l-r~-~ 404 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI-KLLLRLYDPTSGEILIDGIDIRDISLDSL-RK-R 404 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCEehhhcCHHHH-HH-h
Confidence 48999999999 7999999999999999999999999999 999997 345777766654332 22 3
Q ss_pred CeEEEccCceecceecCcchhHHHh----------------------h-------------------------chhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~l~~~ 108 (240)
.++|+|++.+|. -|+.+|..+... + ++.++.+
T Consensus 405 I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 405 IGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred ccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 579999999988 466655443210 0 1125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ ...+.+.+.++.+ ++|+++++|.++.+ .. ||+|++|++ ++...|+++++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti----------~~-aD~IiVl~~G~i~e~G~h~eL 550 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTI----------KN-ADRIIVLDNGRIVERGTHEEL 550 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHH----------Hh-CCEEEEEECCEEEEecCHHHH
Confidence 99999999998 2357777776663 57999999999888 44 999999999 99999998775
Q ss_pred ee
Q 026304 182 TL 183 (240)
Q Consensus 182 ~~ 183 (240)
..
T Consensus 551 l~ 552 (567)
T COG1132 551 LA 552 (567)
T ss_pred HH
Confidence 43
No 297
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.91 E-value=8.8e-25 Score=207.07 Aligned_cols=155 Identities=16% Similarity=0.087 Sum_probs=117.2
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++++| ++|+||++++|+.++|+|+||||||||+ ++|+|+ .++|.++..++... .+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~~~~G~I~i~g~~i~~~~~~~--~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYTLAS--LRR 406 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEeHHhcCHHH--HHh
Confidence 59999999998 8899999999999999999999999999 999997 23455544433222 223
Q ss_pred CCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chhhh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDDAY 106 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~l~ 106 (240)
..+|++|++.+|+. |+.+|..+. ..+ .+.++
T Consensus 407 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 407 QVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hceEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 45899999887765 343332211 000 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++++|||||+ .+.+++.|.++. .++|+|++||+++.. ..||+|++|++ ++...|+.+
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~-----------~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTI-----------EKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHH-----------HhCCEEEEEeCCEEEeeCCHH
Confidence 9999999999988 346778887774 368999999999776 77999999998 888777766
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
++
T Consensus 553 ~l 554 (571)
T TIGR02203 553 EL 554 (571)
T ss_pred HH
Confidence 53
No 298
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.9e-25 Score=198.67 Aligned_cols=157 Identities=21% Similarity=0.142 Sum_probs=122.0
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|+||+| |+|+||++++||.++|+|++|||||||+ +++.|. .++|.++..++++.. +.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll-qLl~~~~~~~~G~i~~~g~~~~~l~~~~~-~e- 412 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWDPQQGSITLNGVEIASLDEQAL-RE- 412 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH-HHHHhccCCCCCeeeECCcChhhCChhhH-HH-
Confidence 68999999999 9999999999999999999999999999 999984 556777766654321 21
Q ss_pred CCeEEEccCceecceecCcchhHH-------------Hh-----------------h--------c---------hhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR-------------QK-----------------L--------G---------DDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~-------------~~-----------------~--------~---------~~l~~ 107 (240)
...++.|...+|.. |+.+|+.+. .. + | +.+++
T Consensus 413 ~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 413 TISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred HHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 23678887766654 333332221 00 0 1 12589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+.++++|||||. -.++++++.+..+ |+|+|++||++..+ +.||||++|++ +++..|++++
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~l-----------e~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGL-----------ERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccH-----------hhcCEEEEEECCeeeecCCHHh
Confidence 999999999987 3478888888764 89999999999987 88999999999 9999999887
Q ss_pred eee
Q 026304 181 FTL 183 (240)
Q Consensus 181 ~~~ 183 (240)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 654
No 299
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.91 E-value=3.4e-24 Score=189.55 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=128.1
Q ss_pred CceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEe
Q 026304 8 PAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAM 64 (240)
Q Consensus 8 ~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~ 64 (240)
++.++.+++.+.| ++++||++.+||.++|+|.||||||||- +.|.++ .|.|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG-~allrL~~s~G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG-LALLRLIPSQGEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH-HHHHhhcCcCceEEECCccccc
Confidence 4579999999987 6899999999999999999999999998 888876 567777776
Q ss_pred eccchhcc-cCCCeEEEccCc--eecceecCcchhHHHh-----------------------------------------
Q 026304 65 IKSSKDTR-YAIDSVVTHDGA--KLPCWALPELTSFRQK----------------------------------------- 100 (240)
Q Consensus 65 ~~~~~~~~-~~~~~~v~q~~~--~~~~~~~~~~~~~~~~----------------------------------------- 100 (240)
++...... ++...+|||++. +-|.+++.+...-...
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR 432 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR 432 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence 65443211 123479999864 5566666432211100
Q ss_pred ----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 101 ----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 101 ----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++..++.+|++++|||||+ +.+++++|+++.+++|.+-+++|||+..+ ..+||+|++|++
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv----------rAl~~~viVm~~ 502 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV----------RALCHRVIVMRD 502 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH----------HHhhceEEEEeC
Confidence 0123688999999999999 45899999999988999999999999999 999999999999
Q ss_pred -eeeccCCcce
Q 026304 171 -RCELCGKRAF 180 (240)
Q Consensus 171 -~~~~~g~~~~ 180 (240)
+++..|+.+.
T Consensus 503 GkiVE~G~~~~ 513 (534)
T COG4172 503 GKIVEQGPTEA 513 (534)
T ss_pred CEEeeeCCHHH
Confidence 9999998764
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3e-24 Score=202.09 Aligned_cols=151 Identities=21% Similarity=0.175 Sum_probs=107.7
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEcc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
.+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+... . + ...+|++|+
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~-~----~-~~i~~~~q~ 390 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLL-RTLVGELEPDSGTVKWS-E----N-ANIGYYAQD 390 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEEC-C----c-eEEEEEccc
Confidence 489999999998 8999999999999999999999999999 99999732 22223211 1 1 124677776
Q ss_pred Cc--eecceecCcchhHH--------------Hhh------------------------chhhhccCcEEEEcCccC---
Q 026304 83 GA--KLPCWALPELTSFR--------------QKL------------------------GDDAYAKLDVIGIDEAQF--- 119 (240)
Q Consensus 83 ~~--~~~~~~~~~~~~~~--------------~~~------------------------~~~l~~~p~lllLDEP~~--- 119 (240)
.. +++.+++.++..+. ..+ +..++.+|++||||||++
T Consensus 391 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 391 HAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 (530)
T ss_pred ccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 42 23333443322110 000 122588999999999988
Q ss_pred ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcce
Q 026304 120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRAF 180 (240)
Q Consensus 120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~~ 180 (240)
...+.+.|+++ +.|||++|||++++ ..+|||+++|++ ++. ++|++..
T Consensus 471 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~~----------~~~~d~i~~l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 471 MESIESLNMALEKY----EGTLIFVSHDREFV----------SSLATRIIEITPDGVVDFSGTYEE 522 (530)
T ss_pred HHHHHHHHHHHHHC----CCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEcCCCHHH
Confidence 23455555543 45999999999999 899999999998 765 6776643
No 301
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=2.6e-24 Score=180.50 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=100.0
Q ss_pred EEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc--hhcccCC
Q 026304 12 TTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS--KDTRYAI 75 (240)
Q Consensus 12 ~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~--~~~~~~~ 75 (240)
.+.+++++| ++++||++++|++++|+||||||||||+ ++|+|+. ++|+++...+.. ...+...
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 456777777 8999999999999999999999999999 9999972 233333221110 0111123
Q ss_pred CeEEEccCceecceecCcchhHH------------H------h----------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR------------Q------K----------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~------------~------~----------------------------~~~~l~~~p 109 (240)
.+|++|++.+++ .++.+++.+. . . ++..++.+|
T Consensus 81 i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCcccc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 478898876553 3443322210 0 0 011258899
Q ss_pred cEEEEcCccC------hHHHHH--HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 110 DVIGIDEAQF------FEDLYE--FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~--~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++||||||++ +..+++ +++.+.+ .|.|+|++||+++.+ . .||++++|++
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~----------~-~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYL----------P-HADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH----------h-hCCEEEEecC
Confidence 9999999988 345666 5555554 689999999999987 5 6999998864
No 302
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=1.3e-24 Score=210.42 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=120.3
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++|++++| ++++||++++|+.++|+|+||||||||+ ++|+|+ .++|.++..++.... | .
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~-~ll~g~~~p~~G~I~idg~~i~~~~~~~~-r-~ 531 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRLYTPQHGQVLVDGVDLAIADPAWL-R-R 531 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEehhhCCHHHH-H-H
Confidence 59999999998 8999999999999999999999999999 999997 345666655543322 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~ 107 (240)
..+|++|++.+++. |+.+|..+.. .+ ++.+++
T Consensus 532 ~i~~v~q~~~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 532 QMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred hCeEEccCCeehhh-hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 35899999887764 4443332210 00 122589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|+++. .++|+|++||+++.+ ..||+|++|++ ++..+|++++
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-----------~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTV-----------RACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH-----------HhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999988 346888888774 478999999999887 56999999999 9988888765
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 678 l 678 (694)
T TIGR01846 678 L 678 (694)
T ss_pred H
Confidence 4
No 303
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=198.34 Aligned_cols=157 Identities=16% Similarity=0.085 Sum_probs=122.0
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.++.+|+++.| ++|+||++++|+.++|+|+||||||||+ ++|.|+ .++|.+....++. ..++.
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl-~lL~G~~~~~~G~I~vng~~l~~l~~~--~~~k~ 396 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLL-NLLLGFLAPTQGEIRVNGIDLRDLSPE--AWRKQ 396 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCccccccCHH--HHHhH
Confidence 34556999999 8999999999999999999999999999 999997 3566666555432 22334
Q ss_pred CeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p 109 (240)
..+++|++.+++. |+.+|..+... +.+.++.++
T Consensus 397 i~~v~Q~p~lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 5899999988875 44444322110 012258899
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+++++||||+ -..+.+.|.++++ ++|++++||++..+ .-||+|++|++ +++..|+++++.
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~-----------~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDA-----------ADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHH-----------hcCCEEEEecCCceeccCCHHHHh
Confidence 9999999998 2358888889876 58999999999987 77999999999 999999887764
Q ss_pred e
Q 026304 183 L 183 (240)
Q Consensus 183 ~ 183 (240)
.
T Consensus 543 ~ 543 (559)
T COG4988 543 E 543 (559)
T ss_pred h
Confidence 3
No 304
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=1.5e-24 Score=205.87 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=119.7
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
..|+++|++++| |+|+||++++|+.++|+||||||||||+ ++|+|+ .++|.++..++... .+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~p~~G~I~i~g~~i~~~~~~~--~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL-QLLTRAWDPQQGEILLNGQPIADYSEAA--LR 413 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHH--HH
Confidence 369999999998 8999999999999999999999999999 999997 34555555443322 22
Q ss_pred CCCeEEEccCceecceecCcchhHHH----------------------h------------------------hchhhhc
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K------------------------LGDDAYA 107 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~------------------------~~~~l~~ 107 (240)
...+|++|++.+|+. |+.+|..+.. . +.+.+++
T Consensus 414 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 414 QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred hheeEEcccchhhcc-cHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 335899999887764 4444432210 0 0112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|.++. +++|+|++||+++.+ ..||+|++|++ ++...|+.++
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~-----------~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGL-----------EQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHH-----------HhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999988 346777787775 478999999999887 56999999999 8888888765
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 560 l 560 (574)
T PRK11160 560 L 560 (574)
T ss_pred H
Confidence 4
No 305
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-24 Score=203.52 Aligned_cols=156 Identities=17% Similarity=0.115 Sum_probs=125.6
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++||+|+| ++|+||+|+|||+++|+||||+||||+. .+|.++ .++|.++..+++....
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia-sLL~rfY~PtsG~IllDG~~i~~~~~~~lr-- 541 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA-SLLLRFYDPTSGRILLDGVPISDINHKYLR-- 541 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCeehhhcCHHHHH--
Confidence 69999999999 9999999999999999999999999999 999886 4688888887765433
Q ss_pred CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~ 106 (240)
+.+++|.|++.+|.. ++.+|..+.. . +++.++
T Consensus 542 ~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 346999999999876 4555443310 0 022369
Q ss_pred ccCcEEEEcCccCh-H-----HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQFF-E-----DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~~-~-----~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
++|.+|||||.|+. + .+.+.|.++.+ +.|||++.|.++-+ +.||+|+++++ ++..-|+.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV-----------~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTV-----------RHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHh-----------hhccEEEEEcCCeEEecccHH
Confidence 99999999999992 1 46667767664 69999999999998 78999999999 998888766
Q ss_pred eee
Q 026304 180 FFT 182 (240)
Q Consensus 180 ~~~ 182 (240)
++.
T Consensus 688 eLl 690 (716)
T KOG0058|consen 688 ELL 690 (716)
T ss_pred HHh
Confidence 543
No 306
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.7e-24 Score=177.80 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=94.9
Q ss_pred EEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEE
Q 026304 11 VTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 11 l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
++++||+++| ++++||+|++|++++|+||||||||||+ ++|+|+. ...-.+.... ..+|+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl-~~i~G~~~~~~G~i~~~g--------~i~~~ 71 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-SALLGELEKLSGSVSVPG--------SIAYV 71 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCCeEEEcC--------EEEEE
Confidence 3577777765 6699999999999999999999999999 9999973 2222222110 13566
Q ss_pred EccCceecceecCcchhH---------------------HH-------------------------hhchhhhccCcEEE
Q 026304 80 THDGAKLPCWALPELTSF---------------------RQ-------------------------KLGDDAYAKLDVIG 113 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~---------------------~~-------------------------~~~~~l~~~p~lll 113 (240)
+|++.+++ .++.++..+ .. .+...++.+|++++
T Consensus 72 ~q~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll 150 (204)
T cd03250 72 SQEPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL 150 (204)
T ss_pred ecCchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 66654432 222221111 00 01223689999999
Q ss_pred EcCccC------hHHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 114 IDEAQF------FEDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 114 LDEP~~------~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
||||++ .+.+.+ +++++.+ .|.|||++||+++.+ .. ||++++|++
T Consensus 151 lDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~----------~~-~d~i~~l~~ 202 (204)
T cd03250 151 LDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLL----------PH-ADQIVVLDN 202 (204)
T ss_pred EeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHH----------hh-CCEEEEEeC
Confidence 999988 235666 3455555 589999999999998 66 999999875
No 307
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=170.76 Aligned_cols=163 Identities=20% Similarity=0.149 Sum_probs=126.7
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce--EEeeccc---hhc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN--IAMIKSS---KDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~--i~~~~~~---~~~ 71 (240)
.|.++++++.| |-||+|+.++||.+.++||+|||||||+ |.++-+. +.|.. ....+.. ...
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssll-r~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHH-HHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 47899999999 8999999999999999999999999999 9886542 11211 1111111 112
Q ss_pred ccCCCeEEEccCceecceecCcchhHH--------------------Hhh-----------------------chhhhcc
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL-----------------------GDDAYAK 108 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~-----------------------~~~l~~~ 108 (240)
|. ..|+|||...++|.+++.+|+--. .++ ++.++++
T Consensus 81 r~-~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 81 RR-NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HH-hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 22 248999999999999887654210 000 1236999
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|++||||+ ..++.++++++.. .|+|-+++||..+.+ ...|.+++.|.+ +++..|+.+.|
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~va----------~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEVA----------RKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhHH----------HhhhhheEeeecCeeEeecchhhc
Confidence 99999999988 2479999999997 799999999999999 999999999999 99999988877
Q ss_pred eeee
Q 026304 182 TLRK 185 (240)
Q Consensus 182 ~~~~ 185 (240)
+...
T Consensus 229 t~p~ 232 (242)
T COG4161 229 TEPQ 232 (242)
T ss_pred cCcc
Confidence 6544
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=6.3e-24 Score=200.82 Aligned_cols=149 Identities=21% Similarity=0.067 Sum_probs=109.5
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.|++++|++++| ++|+||+|++|++++|+||||||||||| ++|+|+. ..|. +.. .. + ...+|++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-~~i~G~~~p~~G~-i~~-~~----~-~~i~~v~ 74 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFNGE-ARP-AP----G-IKVGYLP 74 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEe-cC----C-CEEEEEe
Confidence 489999999988 7999999999999999999999999999 9999973 2343 221 11 1 1247888
Q ss_pred ccCceecceecCcchhHH------------------------------------------------Hh------------
Q 026304 81 HDGAKLPCWALPELTSFR------------------------------------------------QK------------ 100 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~~------------------------------------------------~~------------ 100 (240)
|++.+++.+++.+++.+. .+
T Consensus 75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 154 (552)
T TIGR03719 75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP 154 (552)
T ss_pred ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence 887666655554443210 00
Q ss_pred -----------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304 101 -----------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD 157 (240)
Q Consensus 101 -----------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~ 157 (240)
++..++.+|++|||||||+ ...+.++|+++ +.|||++|||++++
T Consensus 155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~--------- 221 (552)
T TIGR03719 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFL--------- 221 (552)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHH---------
Confidence 0112588999999999988 23455555443 45999999999999
Q ss_pred HHhhccceeeecc-eee-ccCCcc
Q 026304 158 IIPLADTVTKLTA-RCE-LCGKRA 179 (240)
Q Consensus 158 L~~~ad~i~~l~~-~~~-~~g~~~ 179 (240)
..+||++++|++ ++. +.|+..
T Consensus 222 -~~~~d~v~~l~~g~i~~~~g~~~ 244 (552)
T TIGR03719 222 -DNVAGWILELDRGRGIPWEGNYS 244 (552)
T ss_pred -HhhcCeEEEEECCEEEEecCCHH
Confidence 899999999998 654 556654
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=4.5e-24 Score=176.28 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=94.6
Q ss_pred eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccch-hcccCCCeEEEcc
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSK-DTRYAIDSVVTHD 82 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~-~~~~~~~~~v~q~ 82 (240)
||+++|++++| +.++||++++|++++|+||||||||||+ ++|+|+. ..|. +....... .......+|++|.
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLL-RMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcE-EEECCcccChhhhhhEEeccCC
Confidence 58899999998 4459999999999999999999999999 9999972 1222 22111000 0001123677776
Q ss_pred CceecceecCcchhHHHh--------------h-----------------------chhhhccCcEEEEcCccC------
Q 026304 83 GAKLPCWALPELTSFRQK--------------L-----------------------GDDAYAKLDVIGIDEAQF------ 119 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~--------------~-----------------------~~~l~~~p~lllLDEP~~------ 119 (240)
..++...++.++..+... + ...++.+|++++||||++
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 555555555544432110 0 112588999999999987
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 120 FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
...+.+++++..+ .+.|||++||+++.+
T Consensus 159 ~~~l~~~l~~~~~-~~~tiii~sh~~~~i 186 (195)
T PRK13541 159 RDLLNNLIVMKAN-SGGIVLLSSHLESSI 186 (195)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCcccc
Confidence 3467788876655 689999999999887
No 310
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=2e-24 Score=204.88 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=116.7
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++++| ++++||++++|+.++|+||||||||||+ ++|.|+. ++|+++...+.. ..+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~i~~~g~~~~~~~~~--~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSEGDIRFHDIPLTKLQLD--SWRS 389 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEHhhCCHH--HHHh
Confidence 58999999988 8999999999999999999999999999 9999972 344444333221 1122
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~ 107 (240)
..+|++|++.+++. |+.+|..+.. . ++..+++
T Consensus 390 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 390 RLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred heEEEccCCeeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 35899999887764 4444332210 0 0122589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.|+++. .++|+|++||+++.+ ..||+|++|++ ++...|+.++
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSAL-----------TEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHH-----------HcCCEEEEEeCCEEEEecCHHH
Confidence 999999999988 346778887764 489999999999876 56999999998 8888887654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 536 l 536 (569)
T PRK10789 536 L 536 (569)
T ss_pred H
Confidence 3
No 311
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.90 E-value=2.6e-24 Score=204.65 Aligned_cols=155 Identities=17% Similarity=0.077 Sum_probs=116.4
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
.++++|++++| ++|+||++++|+.++|+||||||||||+ ++|.|+. ++|.++...+... ....
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~--~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI-NLLQRVYDPTVGQILIDGIDINTVTRES--LRKS 410 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHccCCCCCCCEEEECCEEhhhCCHHH--HHhh
Confidence 59999999998 8999999999999999999999999999 9999972 3444443332221 1223
Q ss_pred CeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~~~ 108 (240)
.+|++|++.+++. |+.+|..+. ..+ +..++.+
T Consensus 411 i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 411 IATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred eEEEccCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5899999877653 444333221 000 1125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ ...+.+.|.++. .++|+|++||+++.+ ..||+|++|++ ++...|+.+++
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTV-----------RNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHH-----------HcCCEEEEEECCEEEEECCHHHH
Confidence 99999999988 346778887764 479999999999887 56999999999 88877776544
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=4.6e-24 Score=199.00 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=107.4
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeecc------chhccc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKS------SKDTRY 73 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~------~~~~~~ 73 (240)
.++|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+.. .|. +..... ......
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~G~~~~~~~G~-i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL-SLITGDHPQGYSND-LTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCcccCCe-EEEecccCCCCCCHHHHH
Confidence 4589999999998 8999999999999999999999999999 99999732 332 221110 000111
Q ss_pred CCCeEEEccCceecc--eecCcch-----------------------hHHHhh------------------------chh
Q 026304 74 AIDSVVTHDGAKLPC--WALPELT-----------------------SFRQKL------------------------GDD 104 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~--~~~~~~~-----------------------~~~~~~------------------------~~~ 104 (240)
...+|++|+..++.. .++.++. .+...+ +..
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 234788876432111 1111100 000000 122
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHh-hccceeeecc-eee
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIP-LADTVTKLTA-RCE 173 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~-~ad~i~~l~~-~~~ 173 (240)
++.+|++||||||++ +..+.++|++++++.+.|||++|||++++ .. +||++++|++ +++
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~----------~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA----------PACITHRLEFVPDGDIY 482 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh----------hhhhheeEEEecCCceE
Confidence 589999999999988 45799999999873345799999999999 77 5999999987 654
No 313
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2.9e-24 Score=176.21 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=123.3
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~ 71 (240)
|+++.|+++.| |+++|++|++|+++.|+|.||||||||+ +.|+|. .++|.++..++...+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTll-n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL-NAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHH-HHhhCccccCCceEEECceecccCCHHHHh
Confidence 56778888876 8999999999999999999999999999 999996 4678888777654433
Q ss_pred ccCCCeEEEccCc--eecceecCcchhHHHhh-----------------------------------------chh----
Q 026304 72 RYAIDSVVTHDGA--KLPCWALPELTSFRQKL-----------------------------------------GDD---- 104 (240)
Q Consensus 72 ~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~~-----------------------------------------~~~---- 104 (240)
. ...-|||++. ..+.+|++||..+...- +|+
T Consensus 80 ~--~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal 157 (263)
T COG1101 80 N--LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL 157 (263)
T ss_pred h--HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence 2 2356788864 56788888887664321 111
Q ss_pred -----hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 105 -----AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 105 -----l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
.++.|++|+|||-|+ ...++++-.++.++.+.|.+||||.++.+ ..|.+|.++|++ ++
T Consensus 158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A----------l~yG~RlImLh~G~I 227 (263)
T COG1101 158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA----------LDYGNRLIMLHSGKI 227 (263)
T ss_pred HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH----------HhhCCeEEEEeCCeE
Confidence 278999999999988 34788888898887899999999999999 999999999999 77
Q ss_pred ecc
Q 026304 173 ELC 175 (240)
Q Consensus 173 ~~~ 175 (240)
+.+
T Consensus 228 vlD 230 (263)
T COG1101 228 VLD 230 (263)
T ss_pred EEE
Confidence 644
No 314
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=4e-24 Score=175.72 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=87.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCc--eeccee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGA--KLPCWA 90 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~--~~~~~~ 90 (240)
++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++..............+|++|++. ++. .+
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~t 85 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLL-LHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA-AD 85 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-cc
Confidence 7999999999999999999999999999 9999972 3444432111111111123489999862 332 35
Q ss_pred cCcchhHHH------------h-------h-----------------------chhhhccCcEEEEcCccC------hHH
Q 026304 91 LPELTSFRQ------------K-------L-----------------------GDDAYAKLDVIGIDEAQF------FED 122 (240)
Q Consensus 91 ~~~~~~~~~------------~-------~-----------------------~~~l~~~p~lllLDEP~~------~~~ 122 (240)
+.++..+.. . + ...++.+|++|+||||++ +..
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 544443210 0 0 112588999999999988 457
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+.++|+++++ +|.|||++|||++++
T Consensus 166 ~~~~l~~~~~-~~~tili~sH~~~~~ 190 (190)
T TIGR01166 166 MLAILRRLRA-EGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHH-cCCEEEEEeeccccC
Confidence 8899999876 689999999998753
No 315
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.90 E-value=2.5e-24 Score=204.28 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=115.5
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~ 73 (240)
.|+++|++++| ++|+||++++||.++|+||||||||||+ ++|+|+. ++|.++..+.+.. ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl-klL~gl~~p~~G~I~i~g~~i~~~~~~~--~~ 413 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF-QLLLRFYDPQSGRILLDGVDLRQLDPAE--LR 413 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHH--HH
Confidence 59999999987 7899999999999999999999999999 9999972 3444443332222 12
Q ss_pred CCCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~ 106 (240)
+..+|++|++.+++. |+.+|..+. ..+ ++.++
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 235899999887764 333332210 000 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|+|||||+ .+.+++.++++. .++|+|++||+++.. ..||++++|++ ++...|+++
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~-----------~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATV-----------LKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH-----------HhCCEEEEEECCEEEeeecHH
Confidence 8999999999988 345777887774 479999999999776 67999999999 888777765
Q ss_pred e
Q 026304 180 F 180 (240)
Q Consensus 180 ~ 180 (240)
.
T Consensus 560 ~ 560 (576)
T TIGR02204 560 E 560 (576)
T ss_pred H
Confidence 4
No 316
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=7.9e-24 Score=181.94 Aligned_cols=148 Identities=18% Similarity=0.092 Sum_probs=99.5
Q ss_pred cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCc-----------------eEEeeccc
Q 026304 14 NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGR-----------------NIAMIKSS 68 (240)
Q Consensus 14 ~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~-----------------~i~~~~~~ 68 (240)
.|++++| ++++|+ +.+|++++|+||||||||||+ ++|+|+. ..|+ ++.....
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLl-k~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~- 80 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTAL-KILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT- 80 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH-
Confidence 4677777 789994 999999999999999999999 9999973 1232 2111100
Q ss_pred hhcccC-CCeEEEccCceecceecCcchh--------------HHHh-----------------------hchhhhccCc
Q 026304 69 KDTRYA-IDSVVTHDGAKLPCWALPELTS--------------FRQK-----------------------LGDDAYAKLD 110 (240)
Q Consensus 69 ~~~~~~-~~~~v~q~~~~~~~~~~~~~~~--------------~~~~-----------------------~~~~l~~~p~ 110 (240)
...+.. ..++++|....++. ++.++.. +... ++..++.+|+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred HhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 000101 12455665444332 1111100 0000 0122588999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccC
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCG 176 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g 176 (240)
++++|||++ +..+.++++++++ .+.|||++|||++++ ..+||++++|++++.+.|
T Consensus 160 illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~----------~~~ad~i~~l~~~~~~~~ 220 (255)
T cd03236 160 FYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVL----------DYLSDYIHCLYGEPGAYG 220 (255)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH----------HHhCCEEEEECCCCCcce
Confidence 999999988 3468899999876 589999999999999 889999999987655433
No 317
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=3.8e-24 Score=210.51 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=124.4
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.++++||+|+| |+++||.|++|+.++|+|||||||||++ ++|.++ .++|.++..+.....+
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~idG~di~~~~~~~lr-- 426 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGEDIRNLNLKWLR-- 426 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCceEEEcCccchhcchHHHH--
Confidence 69999999999 8999999999999999999999999999 999997 4678887766544332
Q ss_pred CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~ 106 (240)
..+|+|+|++.+|.. |+.+|..+.. . +++.++
T Consensus 427 ~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 427 SQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 246999999977754 5554443311 0 012369
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|||||||+ ...+.+.|.+.. .|+|-|+++|+++.+ +.||+|++|++ +++..|+++
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStI-----------rnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTI-----------RNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhh-----------hccCEEEEEECCEEEEecCHH
Confidence 9999999999999 224666666654 488999999999998 44999999999 999999988
Q ss_pred eeee
Q 026304 180 FFTL 183 (240)
Q Consensus 180 ~~~~ 183 (240)
++..
T Consensus 573 ELi~ 576 (1228)
T KOG0055|consen 573 ELIA 576 (1228)
T ss_pred HHHh
Confidence 7543
No 318
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.6e-23 Score=182.38 Aligned_cols=150 Identities=21% Similarity=0.198 Sum_probs=105.0
Q ss_pred CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304 8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
.+.|+++|+++.. ++++||+|++|++++|+||||||||||+ ++|+|+. ..|. +... . ..+|++|+
T Consensus 37 ~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl-~~I~Gl~~p~~G~-I~i~-g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLL-MLILGELEPSEGK-IKHS-G-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEEC-C-------EEEEEeCc
Confidence 4579999999864 9999999999999999999999999999 9999973 2332 2211 0 12455555
Q ss_pred CceecceecCcchhH----------------------------------------------HHhhchhhhccCcEEEEcC
Q 026304 83 GAKLPCWALPELTSF----------------------------------------------RQKLGDDAYAKLDVIGIDE 116 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~l~~~p~lllLDE 116 (240)
..+++. ++.++..+ ...++..++.+|++|||||
T Consensus 107 ~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 107 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 443321 22111100 0001223688999999999
Q ss_pred ccC------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 117 AQF------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 117 P~~------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++ ...+++.+ .++. .+.|||++|||++++ ..||++++|++ ++...|+++.+
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEHL-----------KKADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence 987 23455544 4443 478999999999987 47999999999 88888876654
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=3.3e-23 Score=168.59 Aligned_cols=141 Identities=18% Similarity=0.078 Sum_probs=92.7
Q ss_pred EcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceec-
Q 026304 13 TNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWAL- 91 (240)
Q Consensus 13 ~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~- 91 (240)
+-+.+...++|+||++++|++++|+||||||||||| +++.+ ..|... ........+.....|++|... ...+.+
T Consensus 3 ~~~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl-~~il~--~~G~v~-~~~~~~~~~~~~~~~~~q~~~-l~~~~L~ 77 (176)
T cd03238 3 VSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV-NEGLY--ASGKAR-LISFLPKFSRNKLIFIDQLQF-LIDVGLG 77 (176)
T ss_pred ecceeeeeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhh--cCCcEE-ECCcccccccccEEEEhHHHH-HHHcCCC
Confidence 344555559999999999999999999999999999 98853 223221 111100000111245555111 000110
Q ss_pred -----------CcchhHHHhhchhhhcc--CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc
Q 026304 92 -----------PELTSFRQKLGDDAYAK--LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF 152 (240)
Q Consensus 92 -----------~~~~~~~~~~~~~l~~~--p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f 152 (240)
.........+...++.+ |+++|||||++ ...+.+.++++.+ .|.|||++||+++++
T Consensus 78 ~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~---- 152 (176)
T cd03238 78 YLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVL---- 152 (176)
T ss_pred ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----
Confidence 01111122234557889 99999999988 3568888888876 699999999999887
Q ss_pred chHHHHHhhccceeeecc
Q 026304 153 GSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 153 ~~~~~L~~~ad~i~~l~~ 170 (240)
..||++++|.+
T Consensus 153 -------~~~d~i~~l~~ 163 (176)
T cd03238 153 -------SSADWIIDFGP 163 (176)
T ss_pred -------HhCCEEEEECC
Confidence 47999999976
No 320
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=167.63 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=115.7
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CC---------ceE--Eeeccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NG---------RNI--AMIKSS 68 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g---------~~i--~~~~~~ 68 (240)
..|.+++.++|+.| .++|||++.+||+.+|+|.+|||||||| ++|++-. . .| +.. ..++..
T Consensus 3 ~~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL-~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-KCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred CCcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHH-HHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 34689999999999 8899999999999999999999999999 9998841 1 11 111 111111
Q ss_pred hhcc--cCCCeEEEccCceecceecC--cchh-------------H-------------------------------HHh
Q 026304 69 KDTR--YAIDSVVTHDGAKLPCWALP--ELTS-------------F-------------------------------RQK 100 (240)
Q Consensus 69 ~~~~--~~~~~~v~q~~~~~~~~~~~--~~~~-------------~-------------------------------~~~ 100 (240)
.+.+ ....|+|.|++.---.+.+. .|.. + ...
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 1111 11237888865321112221 1110 0 001
Q ss_pred hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
++..++..|+++++||||. +..++++++.+..+.+..++++|||+..+ .-++||..+|++ +++
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va----------rLla~rlmvmk~g~vv 231 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA----------RLLADRLMVMKQGQVV 231 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH----------HHhhhcceeecCCCEe
Confidence 1223689999999999987 56899999999887899999999999999 889999999999 888
Q ss_pred ccCCcc
Q 026304 174 LCGKRA 179 (240)
Q Consensus 174 ~~g~~~ 179 (240)
..|-.+
T Consensus 232 e~GLTD 237 (258)
T COG4107 232 ESGLTD 237 (258)
T ss_pred cccccc
Confidence 777543
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=200.63 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=106.8
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.++|+++|+++.| ++++||+|.+|++++|+||||||||||| ++|+|+. ..|. +.... . . ..+|++
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~-i~~~~-~----~-~igy~~ 381 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLI-KLLAGELAPVSGE-IGLAK-G----I-KLGYFA 381 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCe-EEECC-C----E-EEEEec
Confidence 4589999999998 8999999999999999999999999999 9999973 2332 22111 0 0 135666
Q ss_pred ccC--ceecceecCcch-------------hHHHh------------------------hchhhhccCcEEEEcCccC--
Q 026304 81 HDG--AKLPCWALPELT-------------SFRQK------------------------LGDDAYAKLDVIGIDEAQF-- 119 (240)
Q Consensus 81 q~~--~~~~~~~~~~~~-------------~~~~~------------------------~~~~l~~~p~lllLDEP~~-- 119 (240)
|.. .+.+..++.+.. .+... +...++.+|++|||||||+
T Consensus 382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 642 111211211110 00000 0122588999999999998
Q ss_pred ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCccee
Q 026304 120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRAFF 181 (240)
Q Consensus 120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~~~ 181 (240)
...+.+.|.++ +.|||+||||++++ ..+||++++|++ ++. +.|+...+
T Consensus 462 D~~~~~~l~~~L~~~----~gtvi~vSHd~~~~----------~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 462 DLDMRQALTEALIDF----EGALVVVSHDRHLL----------RSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CHHHHHHHHHHHHHc----CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEcCCCHHHH
Confidence 34566666554 34999999999999 999999999998 775 67776654
No 322
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=6.2e-24 Score=220.04 Aligned_cols=156 Identities=13% Similarity=0.010 Sum_probs=124.5
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++||+++| |+|+||+|++||.+||+|++|||||||+ ++|.|+ .++|.++..++.... |.
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl-~lL~rl~~p~~G~I~IDG~dI~~i~l~~L-R~- 1313 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML-NALFRIVELERGRILIDGCDISKFGLMDL-RK- 1313 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCEecccCCHHHH-Hh-
Confidence 59999999999 8999999999999999999999999999 999997 467888776654432 32
Q ss_pred CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~ 108 (240)
..++++|++.+|.. |+.+|+.... . +++.++++
T Consensus 1314 ~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999988875 5554443210 0 01226899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ ...+.+.|++.. .++|+|+++|+++.+ ..||||++|++ +++..|+|+++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI-----------~~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTI-----------IDCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHH-----------HhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999998 125667777664 479999999999988 45999999999 99999999875
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 1460 l 1460 (1622)
T PLN03130 1460 L 1460 (1622)
T ss_pred H
Confidence 4
No 323
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=6e-24 Score=219.47 Aligned_cols=156 Identities=12% Similarity=0.009 Sum_probs=122.7
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++||+++| |+|+||+|++||.+||+||+|||||||+ ++|.|+ .++|.++..++.... | +
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~-~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R-~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML-NALFRIVELEKGRIMIDDCDVAKFGLTDL-R-R 1310 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCceEEECCEEhhhCCHHHH-H-h
Confidence 59999999999 8999999999999999999999999999 999997 457777766554322 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~ 108 (240)
..++++|++.+|+. |+.+|+.... . +++.++++
T Consensus 1311 ~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1311 VLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 35899999988875 5554432210 0 01226899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ ...+.+.|++.. .++|+|+++|+++.+ ..||||++|++ +++..|+++++
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTI-----------IDCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999998 124666676654 479999999999888 45999999999 99999998875
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 1457 l 1457 (1495)
T PLN03232 1457 L 1457 (1495)
T ss_pred H
Confidence 4
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=2.5e-23 Score=184.12 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=125.1
Q ss_pred CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------------hhCCceEEe
Q 026304 7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------------SDNGRNIAM 64 (240)
Q Consensus 7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------------~~~g~~i~~ 64 (240)
..+.|+++|+|+.| +++|||++.+||.++|+|.||||||-.. +.++++ .++|.++..
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa-~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTA-LSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHH-HHHHHhcCCCcccCccceeEEcChhhhc
Confidence 34689999999998 8999999999999999999999999998 888776 356777766
Q ss_pred eccchhc--ccCCCeEEEccCc--eecceecCcc----hh----------------HHHh----------------h-ch
Q 026304 65 IKSSKDT--RYAIDSVVTHDGA--KLPCWALPEL----TS----------------FRQK----------------L-GD 103 (240)
Q Consensus 65 ~~~~~~~--~~~~~~~v~q~~~--~~~~~~~~~~----~~----------------~~~~----------------~-~~ 103 (240)
.+..... |-..++++||++. +-|-.++... +. +... + +|
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 6544322 2234589999864 2222222210 00 0000 0 11
Q ss_pred ---------hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 104 ---------DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 104 ---------~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
.++.+|++||.||||. +.+++++|+++.++.|..++++|||+..+ ..+||||++|
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iV----------r~~ADrV~VM 231 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV----------RKFADRVYVM 231 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHH----------HHhhhhEEEE
Confidence 2589999999999977 56899999999988999999999999999 9999999999
Q ss_pred cc-eeeccCCcce
Q 026304 169 TA-RCELCGKRAF 180 (240)
Q Consensus 169 ~~-~~~~~g~~~~ 180 (240)
.. +|+..|..+.
T Consensus 232 ~~G~ivE~~~t~~ 244 (534)
T COG4172 232 QHGEIVETGTTET 244 (534)
T ss_pred eccEEeecCcHHH
Confidence 99 9998887654
No 325
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.90 E-value=7.9e-24 Score=199.05 Aligned_cols=142 Identities=19% Similarity=0.115 Sum_probs=108.4
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++|++++| ++|+||++++|+.++|+||||||||||+ ++|.|+ .++|.++..++... .| +
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~I~~~g~~i~~~~~~~-lr-~ 396 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLL-NLLLGFVDPTEGSIAVNGVPLADADADS-WR-D 396 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEehhhCCHHH-HH-h
Confidence 69999999998 8999999999999999999999999999 999997 24555555443322 12 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~ 107 (240)
..+|++|++.+|+. |+.+|..+.. .+ ++.+++
T Consensus 397 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 397 QIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred heEEEcCCCcccCc-CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 35899999888764 5554433210 00 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
+|++++|||||+ ...+.+.+.++. .++|+|++||+++.+ ..||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-----------~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALA-----------ERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH-----------HhCCEEEeC
Confidence 999999999988 236777777764 479999999999877 679999875
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.90 E-value=2.3e-23 Score=197.08 Aligned_cols=141 Identities=20% Similarity=0.134 Sum_probs=103.5
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.++|+++|+++.| ++++||+|.+|++++|+||||||||||+ ++|+|+. ..| .+.. ... . ..+|++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G-~i~~-~~~----~-~i~~v~ 393 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF-KMITGQEQPDSG-TIKI-GET----V-KLAYVD 393 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCe-EEEE-CCc----e-EEEEEe
Confidence 3589999999998 8999999999999999999999999999 9999973 233 2322 111 1 247888
Q ss_pred ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304 81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~ 118 (240)
|+. .+++.+++.+++.+. ..+ ...++.+|++|||||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 864 444444444333211 000 11258899999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+ +..+.++|.++ +.|||++|||++++ ..+||++++|++
T Consensus 474 ~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~----------~~~~d~i~~l~~ 517 (556)
T PRK11819 474 NDLDVETLRALEEALLEF----PGCAVVISHDRWFL----------DRIATHILAFEG 517 (556)
T ss_pred CCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHH----------HHhCCEEEEEEC
Confidence 8 34566666654 23899999999999 999999999973
No 327
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=163.15 Aligned_cols=144 Identities=18% Similarity=0.186 Sum_probs=109.3
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----------~~~g~~i~~~~~~~~~~~ 73 (240)
|+.++|++.+. |-++||+|.+||++.|+||+|||||||+ ..+.|. .++++++...+.. +
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLl-s~~~G~La~~F~~~G~~~l~~~~l~~lPa~---q- 76 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLL-SWMIGALAGQFSCTGELWLNEQRLDMLPAA---Q- 76 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHH-HHHHhhcccCcceeeEEEECCeeccccchh---h-
Confidence 67899999775 8899999999999999999999999999 888884 3455555554432 1
Q ss_pred CCCeEEEccCceecceecCcchhHHHh--h------------------------------c---------hhhhccCcEE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK--L------------------------------G---------DDAYAKLDVI 112 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~--~------------------------------~---------~~l~~~p~ll 112 (240)
+..|++||+..+|+.+++.+|+.+..- + + ..++..|+.+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 235899999999999999877644210 0 1 1258899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
+||||.+ ++++.+++..-....|+..++||||...+ ....||+.+.
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dv-----------pagsrVie~~ 208 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDV-----------PAGSRVIEMA 208 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC-----------CCCCeeeeee
Confidence 9999987 34556655443344799999999999988 4567777654
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.89 E-value=3.3e-23 Score=173.57 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=95.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~ 98 (240)
++|+||+|++|++++|+||||||||||+ ++|+|+. ..|. +..+.... . .+.+...+++.+++.++..+.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~sG~-i~~~~~~~-~------~~~~~~~l~~~ltv~enl~~~ 73 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLT-RLLCGLDAPDEGD-FIGLRGDA-L------PLGANSFILPGLTGEENARMM 73 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCCC-EEEecCce-e------ccccccccCCcCcHHHHHHHH
Confidence 6899999999999999999999999999 9999973 2343 21111100 0 011122233333333333221
Q ss_pred Hh---------------------------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304 99 QK---------------------------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH 133 (240)
Q Consensus 99 ~~---------------------------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~ 133 (240)
.. +...++.+|++++||||++ ...+.+.+.+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~- 152 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ- 152 (213)
T ss_pred HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence 10 1122588999999999966 3356666654433
Q ss_pred CCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 134 DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 134 ~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+.++|++||+++.+ ..+||++++|++ ++.++++.+...
T Consensus 153 -~~~ii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 153 -QKGLIVLTHNPRLI----------KEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred -CCcEEEEECCHHHH----------HHhcCeeEEEECCeEEEeCCHHHHH
Confidence 35799999999999 889999999999 888888766543
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=3.1e-23 Score=196.09 Aligned_cols=141 Identities=21% Similarity=0.161 Sum_probs=102.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.++|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ..| .+.. ... . ..+|++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G-~i~~-~~~----~-~i~~v~ 391 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLF-RMITGQEQPDSG-TIKI-GET----V-KLAYVD 391 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCe-EEEE-CCc----e-EEEEEe
Confidence 3589999999998 8999999999999999999999999999 9999973 233 2322 111 0 246777
Q ss_pred ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304 81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~ 118 (240)
|+. .+++.+++.+++.+. ..+ ...++.+|++||||||+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 764 244444443332210 000 11258999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+ +..+.++|+++ +.|||++|||++++ ..+||++++|++
T Consensus 472 ~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~----------~~~~d~i~~l~~ 515 (552)
T TIGR03719 472 NDLDVETLRALEEALLEF----AGCAVVISHDRWFL----------DRIATHILAFEG 515 (552)
T ss_pred CCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHH----------HHhCCEEEEEEC
Confidence 8 34566666655 23899999999999 899999999974
No 330
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=3.2e-24 Score=169.97 Aligned_cols=146 Identities=20% Similarity=0.154 Sum_probs=114.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~ 77 (240)
++++++.+.- |+++||++.+||+++|+||+|||||||+ |+++.+ .+.|+++....+...+. ...
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStll-k~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq--~Vs 80 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDVSTLKPEAYRQ--QVS 80 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHH-HHHHhccCCCCceEEEcCccccccChHHHHH--HHH
Confidence 4555654432 8999999999999999999999999999 999886 56788888776654322 236
Q ss_pred EEEccCceecceecCcchhHHHhh--------------------------------ch---------hhhccCcEEEEcC
Q 026304 78 VVTHDGAKLPCWALPELTSFRQKL--------------------------------GD---------DAYAKLDVIGIDE 116 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------~~---------~l~~~p~lllLDE 116 (240)
|+.|.+.+|+. |+++|+.|.-++ || .+..-|++|||||
T Consensus 81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 81 YCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred HHHcCcccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 88888888876 567665543211 11 1467899999999
Q ss_pred ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
||+ ...+-++|.++..++...++++|||.+.+ .+.+|+++-+..
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa----------~rha~k~itl~~ 209 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA----------IRHADKVITLQP 209 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH----------hhhhheEEEecc
Confidence 988 34677888888766889999999999998 899999998876
No 331
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=5.3e-23 Score=173.35 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=98.3
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceec--ceecCcchhH-----
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP--CWALPELTSF----- 97 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~--~~~~~~~~~~----- 97 (240)
|++++|++++|+||||||||||+ ++|+|+. .....+..............+|++|++.++. ..++.++..+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLL-RAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 67899999999999999999999 9999972 2222222211111111123578888764421 1222221110
Q ss_pred ------------------HHhh-----------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304 98 ------------------RQKL-----------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA 130 (240)
Q Consensus 98 ------------------~~~~-----------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l 130 (240)
...+ ...++.+|++|++|||++ +..+.++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0000 122589999999999988 45789999988
Q ss_pred HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304 131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF 181 (240)
Q Consensus 131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~ 181 (240)
.+ +|.|||++|||++++ ..+||++++++.++...|+++.+
T Consensus 160 ~~-~~~tvii~sH~~~~~----------~~~~d~i~~l~G~i~~~~~~~~~ 199 (223)
T TIGR03771 160 AG-AGTAILMTTHDLAQA----------MATCDRVVLLNGRVIADGTPQQL 199 (223)
T ss_pred HH-cCCEEEEEeCCHHHH----------HHhCCEEEEECCEEEeecCHHHh
Confidence 76 699999999999999 89999999994387777766543
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-23 Score=200.74 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=98.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCce-------EEeeccch-hcccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRN-------IAMIKSSK-DTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~-------i~~~~~~~-~~~~~ 74 (240)
||+++||+++| ++++||+|++|++++|+||||||||||| ++|+|+. . .|.- +...++.. .....
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLL-kiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL-ALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 68999999999 8999999999999999999999999999 9999972 2 2221 11111100 00001
Q ss_pred CCeEEEccCceeccee--------------------------cCcch----hH------------------------HHh
Q 026304 75 IDSVVTHDGAKLPCWA--------------------------LPELT----SF------------------------RQK 100 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~--------------------------~~~~~----~~------------------------~~~ 100 (240)
..+++++....+..++ ..+.. .+ ...
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 1122222110000000 00000 00 000
Q ss_pred hchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccC
Q 026304 101 LGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCG 176 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g 176 (240)
++..++.+|++|||||||+ .+ .-.+.|.++..+.+.|||+||||.+++ ..+||++++|++ ++. +.|
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l----------~~~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFL----------DPIVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHH----------HHhcCEEEEEeCCEEEEecC
Confidence 1223689999999999999 22 222233333332467999999999999 999999999998 664 455
Q ss_pred Cc
Q 026304 177 KR 178 (240)
Q Consensus 177 ~~ 178 (240)
..
T Consensus 230 ~~ 231 (638)
T PRK10636 230 NY 231 (638)
T ss_pred CH
Confidence 43
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=1.5e-23 Score=216.75 Aligned_cols=156 Identities=17% Similarity=0.042 Sum_probs=124.1
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++||+++| |+|+||+|++||.+||+|++|||||||+ ++|.|+ .++|.++..++.... |.
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~-~lL~rl~~~~~G~I~IdG~dI~~i~~~~L-R~- 1360 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT-LGLFRINESAEGEIIIDGLNIAKIGLHDL-RF- 1360 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCccCCCCeEEECCEEccccCHHHH-Hh-
Confidence 59999999999 8999999999999999999999999999 999997 467888877654432 22
Q ss_pred CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~ 108 (240)
..++++|++.+|+. |+.+|++... . +++.++++
T Consensus 1361 ~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 35899999998875 5655543110 0 01225899
Q ss_pred CcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ . ..+.+.|++.. .++|||+++|+++.+ ..||||++|++ +++..|+++++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTI-----------MDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999998 1 24666666654 479999999999887 56999999999 99999998765
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 1507 l 1507 (1522)
T TIGR00957 1507 L 1507 (1522)
T ss_pred H
Confidence 4
No 334
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=5.6e-23 Score=175.80 Aligned_cols=131 Identities=20% Similarity=0.067 Sum_probs=92.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~ 98 (240)
|+..++++++|++++|+||||||||||+ ++|+|+. ..|. +... .. ..+|++|........++.+++...
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~L~G~~~p~~G~-i~~~-g~------~i~~~~q~~~~~~~~tv~e~l~~~ 85 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFI-KMLAGVLKPDEGD-IEIE-LD------TVSYKPQYIKADYEGTVRDLLSSI 85 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCCe-EEEC-Cc------eEEEecccccCCCCCCHHHHHHHH
Confidence 4555666678999999999999999999 9999973 2232 2111 00 134555554333333333322110
Q ss_pred ---------------Hh-----------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcC
Q 026304 99 ---------------QK-----------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHD 134 (240)
Q Consensus 99 ---------------~~-----------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~ 134 (240)
.. +...++.+|+++|||||++ +..+.++|++++++.
T Consensus 86 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 165 (246)
T cd03237 86 TKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165 (246)
T ss_pred hhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 00 1123689999999999988 457888999987656
Q ss_pred CCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 135 GKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 135 g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++|||++|||++++ ..+||++++|+.
T Consensus 166 ~~tiiivsHd~~~~----------~~~~d~i~~l~~ 191 (246)
T cd03237 166 EKTAFVVEHDIIMI----------DYLADRLIVFEG 191 (246)
T ss_pred CCEEEEEeCCHHHH----------HHhCCEEEEEcC
Confidence 89999999999999 889999999987
No 335
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=1.6e-23 Score=216.55 Aligned_cols=156 Identities=17% Similarity=0.054 Sum_probs=122.7
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++||+++| |+|+||+|++||.++|+|++|||||||+ ++|.|+ .++|.++..++.... | +
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl-~lLlrl~~p~~G~I~IDG~di~~i~l~~L-R-~ 1384 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVEVCGGEIRVNGREIGAYGLREL-R-R 1384 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccCCHHHH-H-h
Confidence 59999999999 8999999999999999999999999999 999997 467888776654332 2 3
Q ss_pred CCeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~ 108 (240)
..++++|++.+|+. |+.+|+..... +++.++++
T Consensus 1385 ~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 46999999998875 56554432100 01124775
Q ss_pred -CcEEEEcCccCh------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 109 -LDVIGIDEAQFF------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 109 -p~lllLDEP~~~------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|++|||||||+- ..+.+.|++.. .++|||+++|+++.+ ..||+|++|++ ++..+|++++
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTV-----------AQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHH-----------HhCCEEEEEECCEEEEECCHHH
Confidence 899999999991 24666666653 479999999999887 67999999999 9999999877
Q ss_pred ee
Q 026304 181 FT 182 (240)
Q Consensus 181 ~~ 182 (240)
+.
T Consensus 1531 Ll 1532 (1560)
T PTZ00243 1531 LV 1532 (1560)
T ss_pred HH
Confidence 54
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=8.5e-23 Score=190.55 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=105.3
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEcc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
.+|+++|++++| ++++||++.+|+.+||+|+||||||||| ++|+|.. .+...+...+. . ..+|+.|+
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLL-kilaG~~~~~~G~i~~~~~---~---~v~~l~Q~ 74 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLL-KILAGELEPDSGEVTRPKG---L---RVGYLSQE 74 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHH-HHHcCCCcCCCCeEeecCC---c---eEEEeCCC
Confidence 479999999999 8999999999999999999999999999 9999963 22222221110 0 12566665
Q ss_pred CceecceecCc---------------------------------------------------------------------
Q 026304 83 GAKLPCWALPE--------------------------------------------------------------------- 93 (240)
Q Consensus 83 ~~~~~~~~~~~--------------------------------------------------------------------- 93 (240)
....+..++.+
T Consensus 75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~L 154 (530)
T COG0488 75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSL 154 (530)
T ss_pred CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhc
Confidence 54443322211
Q ss_pred --chhHHHhhchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 94 --LTSFRQKLGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 94 --~~~~~~~~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
....+..++..++.+||+|||||||+ .+ +-+++|.+...+...|+|+||||-.|+ -.+|++|+.++
T Consensus 155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FL----------d~V~t~I~~ld 224 (530)
T COG0488 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFL----------DNVATHILELD 224 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHH----------HHHhhheEEec
Confidence 00111112233689999999999999 33 445556554433333999999999999 99999999999
Q ss_pred c-eee-ccCC
Q 026304 170 A-RCE-LCGK 177 (240)
Q Consensus 170 ~-~~~-~~g~ 177 (240)
. ++. +.|.
T Consensus 225 ~g~l~~y~Gn 234 (530)
T COG0488 225 RGKLTPYKGN 234 (530)
T ss_pred CCceeEecCC
Confidence 8 543 4443
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=9.4e-23 Score=195.66 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=105.4
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
..+|+++|++++| ++++||+|.+|++++|+||||||||||| ++|+|+. ..| .+.. ... . ..+|++
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G-~i~~-~~~----~-~i~y~~ 388 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL-KLMLGQLQADSG-RIHC-GTK----L-EVAYFD 388 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCc-EEEE-CCC----c-EEEEEe
Confidence 4589999999998 8999999999999999999999999999 9999973 234 2322 111 1 136777
Q ss_pred ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304 81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~ 118 (240)
|.. .+++.+++.+++.+. ..+ ...++.+|++|||||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 753 344444443322110 000 11258899999999999
Q ss_pred C-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec-c-eee-ccCCcce
Q 026304 119 F-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT-A-RCE-LCGKRAF 180 (240)
Q Consensus 119 ~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~-~-~~~-~~g~~~~ 180 (240)
+ .+ .-.+.|.++..+.+.|||+||||.+++ ..+||++++|+ + ++. +.|+-..
T Consensus 469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~----------~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 469 NDLDVETLELLEELLDSYQGTVLLVSHDRQFV----------DNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH----------HHhcCEEEEEeCCCeEEEccCCHHH
Confidence 8 22 222333333332356999999999999 89999999997 5 543 4454433
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=6.1e-23 Score=193.89 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=108.7
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.++++|++++| ++|+||++++|+.++|+||||||||||+ ++|+|+ .++|.++...+.. .....
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~--~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVTAEQPE--DYRKL 398 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCCCCHH--HHhhh
Confidence 69999999998 8999999999999999999999999999 999997 2455554433221 11234
Q ss_pred CeEEEccCceecceecCcc---------hhHHHh----------------------------hchhhhccCcEEEEcCcc
Q 026304 76 DSVVTHDGAKLPCWALPEL---------TSFRQK----------------------------LGDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~---------~~~~~~----------------------------~~~~l~~~p~lllLDEP~ 118 (240)
.++++|++.+++.. +.++ ..+... +++.++.+|++|+|||||
T Consensus 399 i~~v~q~~~lf~~t-i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 399 FSAVFTDFHLFDQL-LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred eEEEecChhHHHHh-hccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 58999988776542 2111 000000 122368999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
+ ...+.+.+.+..+..++|+|++||+++.+ ..||+|++|++ ++.
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-----------~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-----------IHADRLLEMRNGQLS 528 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-----------HhCCEEEEEECCEEE
Confidence 8 23566666655432589999999999765 68999999998 655
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=3.6e-23 Score=213.52 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=122.5
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++||+++| |+|+||+|++||.++|+|++|||||||+ ++|.|+ .++|.++..++... .| ..
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl-~lL~rl~~~~G~I~IdG~di~~i~~~~-lR-~~ 1293 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL-SALLRLLSTEGEIQIDGVSWNSVTLQT-WR-KA 1293 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEcccCCHHH-HH-hc
Confidence 69999999999 8999999999999999999999999999 999997 34666665554332 22 23
Q ss_pred CeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~p 109 (240)
.++++|++.+|+. |+.+|++... . +++.++++|
T Consensus 1294 is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1294 FGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred eEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 5899999998875 5555443211 0 012258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|+|||||+ ...+.+.|++.. .++|||+++|+++.+ ..||||++|++ +++..|+|.++.
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti-----------~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEAL-----------LECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH-----------HhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999998 235677777654 479999999999887 56999999999 999999987754
No 340
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.88 E-value=1.4e-22 Score=207.83 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=119.7
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----C-CceEEeeccch-hcccC
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----N-GRNIAMIKSSK-DTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~-g~~i~~~~~~~-~~~~~ 74 (240)
+++++||++.| |+|||+++++|++++|+||||||||||| ++|+|... . |. +....... ....+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL-~~Lag~~~~g~~~~G~-I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL-NVLAERVTTGVITGGD-RLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeE-EEECCEECChhhhc
Confidence 68999998876 8999999999999999999999999999 99999742 2 22 22111110 11122
Q ss_pred CCeEEEccCceecceecCcchhHHHhh-------------------------------------------------chhh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------------GDDA 105 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~l 105 (240)
..+|++|++.+++.+|+.+++.+...+ +.++
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 358999988777777777766542110 1125
Q ss_pred hccCc-EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccC
Q 026304 106 YAKLD-VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCG 176 (240)
Q Consensus 106 ~~~p~-lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g 176 (240)
+.+|+ +|+|||||+ ...+++.|+++++ .|.|||+++|+++.. +...||++++|++ ++++.|
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~---------~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAI---------LFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHH---------HHHhcCEEEEEcCCCEEEEEC
Confidence 88997 999999988 3579999999987 699999999999863 1578999999986 788888
Q ss_pred Ccc
Q 026304 177 KRA 179 (240)
Q Consensus 177 ~~~ 179 (240)
+++
T Consensus 987 ~~~ 989 (1394)
T TIGR00956 987 DLG 989 (1394)
T ss_pred Ccc
Confidence 864
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.88 E-value=9.2e-23 Score=195.11 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=115.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC----ceEEeeccc--hhcccCCCeEEEccCceecceecCcc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG----RNIAMIKSS--KDTRYAIDSVVTHDGAKLPCWALPEL 94 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g----~~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~~~~~~ 94 (240)
|+|+|+++++||+++|+||||||||||| ++|+|....+ .++...... .....+..+|++|++.+++.+|+.++
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL-~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLM-NALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 8999999999999999999999999999 9999963221 112211111 11112245899999998988888877
Q ss_pred hhHHHhh--------------------------------c-------------------hhhhccCcEEEEcCccC----
Q 026304 95 TSFRQKL--------------------------------G-------------------DDAYAKLDVIGIDEAQF---- 119 (240)
Q Consensus 95 ~~~~~~~--------------------------------~-------------------~~l~~~p~lllLDEP~~---- 119 (240)
+.+...+ + .+++.+|++++||||++
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 6543210 1 12588999999999988
Q ss_pred --hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 --FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
...+++.|+++++ .|+|||+++|+++ .+ ..+||++++|++ ++++.|++++.
T Consensus 200 ~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i----------~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQ-KGKTIICTIHQPSSEL----------FELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHH----------HHHhceEEEeeCCeEEEECCHHHH
Confidence 3479999999987 6999999999996 67 799999999999 99999987643
No 342
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=6.1e-23 Score=182.25 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=100.7
Q ss_pred EEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh------
Q 026304 36 IMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL------ 101 (240)
Q Consensus 36 iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------ 101 (240)
|+||||||||||+ ++|+|+. ++|+++...++ .+ ...+|++|+..+++.+++.++..+....
T Consensus 1 l~G~nGsGKSTLl-~~iaGl~~p~~G~I~i~g~~i~~~~~---~~-~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLL-RLLAGFEQPDSGSIMLDGEDVTNVPP---HL-RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCH---HH-CCEEEEecCccccCCCcHHHHHHHHHhhcCCCHH
Confidence 6899999999999 9999972 34443322211 11 2358999998888888888776542110
Q ss_pred ------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEE
Q 026304 102 ------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVV 139 (240)
Q Consensus 102 ------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi 139 (240)
...++.+|++||||||++ +..+.+.|+++.++.|.|||
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 112589999999999988 45788899988765689999
Q ss_pred EEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 140 VAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 140 ~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 156 ivTHd~~e~----------~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 156 FVTHDQEEA----------MTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred EEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999 899999999999 88888877643
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=2.8e-22 Score=193.92 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=101.8
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
++|+++|++++| ++++||+|.+|++++|+||||||||||| ++|+|+. ..| .+.. .. +. ..+|++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLL-k~L~Gll~p~~G-~I~~-~~----~~-~igyv~ 578 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLISGELQPSSG-TVFR-SA----KV-RMAVFS 578 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCc-eEEE-CC----ce-eEEEEe
Confidence 589999999988 7899999999999999999999999999 9999973 233 2321 11 11 236777
Q ss_pred ccCceecceecCcch-----------------hHHHh------------------------hchhhhccCcEEEEcCccC
Q 026304 81 HDGAKLPCWALPELT-----------------SFRQK------------------------LGDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 81 q~~~~~~~~~~~~~~-----------------~~~~~------------------------~~~~l~~~p~lllLDEP~~ 119 (240)
|+... .+++..+. .+... +...++.+|++|||||||+
T Consensus 579 Q~~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 579 QHHVD--GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred ccccc--cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 75311 11111000 00000 0122588999999999998
Q ss_pred -hH--HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcc
Q 026304 120 -FE--DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRA 179 (240)
Q Consensus 120 -~~--~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~ 179 (240)
.+ ....++..+.+ .+.|||++|||++++ ..+||++++|++ ++. +.|+..
T Consensus 657 ~LD~~s~~~l~~~L~~-~~gtvIivSHd~~~i----------~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 657 HLDLDAVEALIQGLVL-FQGGVLMVSHDEHLI----------SGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred CCCHHHHHHHHHHHHH-cCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEeCCCHH
Confidence 21 22223333333 234999999999999 999999999988 665 556544
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=1.5e-22 Score=194.25 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=43.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
||+++|++++| ++|+||+|++|++++|+||||||||||| ++|+|+
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLL-riiaG~ 52 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLM-KILNGE 52 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHH-HHHcCC
Confidence 79999999999 8999999999999999999999999999 999997
No 345
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=7.8e-23 Score=210.21 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=109.4
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------h-CCceEEeeccchhcc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------D-NGRNIAMIKSSKDTR 72 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~-~g~~i~~~~~~~~~~ 72 (240)
.|+++||+++| |+|+||+|++|++++|+||||||||||+ ++|.|+. + +|.++...+.. ..|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~i~~g~~i~~~~~~-~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL-KLIERLYDPTEGDIIINDSHNLKDINLK-WWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH-HHHHHhccCCCCeEEEeCCcchhhCCHH-HHH
Confidence 58999999998 7899999999999999999999999999 9999972 2 22333222211 112
Q ss_pred cCCCeEEEccCceecceecCcchhHH------------------------------------------------------
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFR------------------------------------------------------ 98 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~------------------------------------------------------ 98 (240)
...++|+|++.+|+. |+.+|+.+.
T Consensus 460 -~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 460 -SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred -HhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 235899998877753 444433221
Q ss_pred -------------------------Hhh-------------------------chhhhccCcEEEEcCccC------hHH
Q 026304 99 -------------------------QKL-------------------------GDDAYAKLDVIGIDEAQF------FED 122 (240)
Q Consensus 99 -------------------------~~~-------------------------~~~l~~~p~lllLDEP~~------~~~ 122 (240)
..+ +..++.+|++|||||||+ ...
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000 122589999999999988 346
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+.+.|.++.++.|+|+|++||+++.+ ..||+|++|++
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i-----------~~aD~Iivl~~ 654 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTI-----------RYANTIFVLSN 654 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHH-----------HhCCEEEEEeC
Confidence 88888888653589999999999877 58999999986
No 346
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=2.3e-22 Score=190.28 Aligned_cols=149 Identities=20% Similarity=0.157 Sum_probs=106.2
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~ 71 (240)
.|+++|++++| |+|+||++++|++++|+||||||||||+ ++|+|+ .++|.++...+... .
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~p~~G~i~~~g~~i~~~~~~~-~ 414 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLA-KLFCGLYIPQEGEILLDGAAVSADSRDD-Y 414 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHH-H
Confidence 69999999987 5789999999999999999999999999 999996 24455544332221 1
Q ss_pred ccCCCeEEEccCceecceecCcch---------hHHHh-----------------------------hchhhhccCcEEE
Q 026304 72 RYAIDSVVTHDGAKLPCWALPELT---------SFRQK-----------------------------LGDDAYAKLDVIG 113 (240)
Q Consensus 72 ~~~~~~~v~q~~~~~~~~~~~~~~---------~~~~~-----------------------------~~~~l~~~p~lll 113 (240)
+ ...++++|++.+|......+.. ..... +.+.++.+|++++
T Consensus 415 ~-~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 415 R-DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred H-hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2 2358999988776543221100 00000 0122689999999
Q ss_pred EcCccC------hHHHHHHHH-HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 114 IDEAQF------FEDLYEFCC-NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~-~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
|||||+ ...+.+.+. .+.. .++|+|++||+++.+ ..||+|++|++ ++.
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-----------~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYF-----------ELADQIIKLAAGCIV 549 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHH-----------HhCCEEEEEECCEEE
Confidence 999988 234555443 4444 589999999999865 68999999998 654
No 347
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=8.3e-23 Score=192.15 Aligned_cols=129 Identities=22% Similarity=0.192 Sum_probs=98.3
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++||+|+| |+|+||++++|+.++|+||||||||||+ ++|.|+ .++|.++..+ ... .| ..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~i~g~~i~~~-~~~-lr-~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLL-MLLTGLLDPLQGEVTLDGVSVSSL-QDE-LR-RR 409 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhH-HHH-HH-hh
Confidence 59999999999 8999999999999999999999999999 999997 3466666554 322 22 24
Q ss_pred CeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~ 108 (240)
.+|++|++.+|+. |+.+|..+.. .+ ++.++.+
T Consensus 410 i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 410 ISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred eEEEccCcccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 5899999988865 4554433210 00 1226899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
|++|+|||||+ ...+.+.+.++. .++|+|++||++
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99999999998 235677776653 478999999984
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=99.87 E-value=6.3e-22 Score=203.13 Aligned_cols=157 Identities=20% Similarity=0.169 Sum_probs=118.7
Q ss_pred eEEEcceeEee------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEee--
Q 026304 10 AVTTNQVNSGR------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMI-- 65 (240)
Q Consensus 10 ~l~~~~ls~~~------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~-- 65 (240)
.+.++||++.. |+|+|+++++|++++|+||||||||||| ++|+|... .|. +...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL-~~LaG~~~~g~~~G~-I~inG~ 944 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-DVLAGRKTGGYIEGD-IRISGF 944 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH-HHHcCCCCCCcccce-EEECCc
Confidence 57888887652 7899999999999999999999999999 99999742 232 2111
Q ss_pred ccchhcccCCCeEEEccCceecceecCcchhHHHhh--------------------------------------------
Q 026304 66 KSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------- 101 (240)
Q Consensus 66 ~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 101 (240)
+.......+..+|++|++.+++.+|+.+++.+...+
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 111111112358999998888877777665442110
Q ss_pred ------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeee
Q 026304 102 ------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 102 ------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l 168 (240)
+.+++.+|++|+|||||+ ...+++.|+++++ .|.|||+++|+++ .+ ..+||++++|
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i----------~~~~D~vllL 1093 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDI----------FEAFDELLLM 1093 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHH----------HHhCCEEEEE
Confidence 112589999999999988 4579999999987 6999999999998 46 7899999999
Q ss_pred cc--eeeccCCcc
Q 026304 169 TA--RCELCGKRA 179 (240)
Q Consensus 169 ~~--~~~~~g~~~ 179 (240)
++ ++++.|+++
T Consensus 1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred cCCCEEEEECCcc
Confidence 84 788888753
No 349
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=4e-22 Score=189.92 Aligned_cols=149 Identities=21% Similarity=0.224 Sum_probs=118.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc----eEEeec-c-chhcccCCCeEEEccCceecceecCcc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR----NIAMIK-S-SKDTRYAIDSVVTHDGAKLPCWALPEL 94 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~----~i~~~~-~-~~~~~~~~~~~v~q~~~~~~~~~~~~~ 94 (240)
|++||.++++||+.||+||+|||||||| ++|+|....|. ++.... + .........+||.|++.+++.+||+|.
T Consensus 46 L~~vsg~~~~Gel~AimG~SGsGKtTLL-~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~Et 124 (613)
T KOG0061|consen 46 LKGVSGTAKPGELLAIMGPSGSGKTTLL-NALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRET 124 (613)
T ss_pred eeCcEEEEecCeEEEEECCCCCCHHHHH-HHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHH
Confidence 9999999999999999999999999999 99999643321 122111 1 111222345999999999999999987
Q ss_pred hhHHHhh--------------------------------------------------chhhhccCcEEEEcCccC-----
Q 026304 95 TSFRQKL--------------------------------------------------GDDAYAKLDVIGIDEAQF----- 119 (240)
Q Consensus 95 ~~~~~~~--------------------------------------------------~~~l~~~p~lllLDEP~~----- 119 (240)
+.+.+.+ +.+++.+|.+|++||||+
T Consensus 125 L~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061|consen 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF 204 (613)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchh
Confidence 7665432 112699999999999988
Q ss_pred -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
..++++.|+++++ .|+|||++-|.+..- |..+.|++++|.. +++++|++..
T Consensus 205 sA~~vv~~Lk~lA~-~grtVi~tIHQPss~---------lf~lFD~l~lLs~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 205 SALQVVQLLKRLAR-SGRTVICTIHQPSSE---------LFELFDKLLLLSEGEVVYSGSPRE 257 (613)
T ss_pred hHHHHHHHHHHHHh-CCCEEEEEEeCCcHH---------HHHHHhHhhhhcCCcEEEecCHHH
Confidence 3489999999998 599999999998643 4899999999999 9999998754
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.87 E-value=1.8e-22 Score=207.58 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=115.5
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------------------
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------------------ 57 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------------------ 57 (240)
.|+++||+|+| |+|+||+|++|+.++|+||||||||||+ ++|.|+.-
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~-~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM-SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH-HHHHHhCCCccccccccccccccccccccccc
Confidence 59999999999 8899999999999999999999999999 99999732
Q ss_pred --------------------------------------CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH
Q 026304 58 --------------------------------------NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ 99 (240)
Q Consensus 58 --------------------------------------~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~ 99 (240)
+|.++..++.. ..+...+||+|++.+|+. |+.+|+.+..
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~--~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLK--DLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHH--HHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 11222222111 112345899999988864 5554443310
Q ss_pred ----------------------hh-------------------------chhhhccCcEEEEcCccC------hHHHHHH
Q 026304 100 ----------------------KL-------------------------GDDAYAKLDVIGIDEAQF------FEDLYEF 126 (240)
Q Consensus 100 ----------------------~~-------------------------~~~l~~~p~lllLDEP~~------~~~i~~~ 126 (240)
.+ ++.++.+|++|||||||+ ...+.+.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 00 123689999999999998 2357777
Q ss_pred HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-----e-eeccCCccee
Q 026304 127 CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-----R-CELCGKRAFF 181 (240)
Q Consensus 127 l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-----~-~~~~g~~~~~ 181 (240)
|.++....++|+|+++|+++.+ +.||+|++|++ + +...|+.+++
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti-----------~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASI-----------KRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHH-----------HhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 7777522589999999999877 67999999986 3 3467776654
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=1.8e-22 Score=195.24 Aligned_cols=48 Identities=17% Similarity=0.033 Sum_probs=44.9
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
..+|+++|++++| |+|+||+|.+|++++|+||||||||||| ++|+|..
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLL-r~l~g~~ 227 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL-RYMAMHA 227 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHH-HHHcCCC
Confidence 3489999999999 9999999999999999999999999999 9999853
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=3.8e-22 Score=160.33 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=120.7
Q ss_pred ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec
Q 026304 9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK 66 (240)
Q Consensus 9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~ 66 (240)
+.++++|+|+.| ++.|||++++|+.++|+|.||||||||. |+|+|. .++|..+..-.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLa-kMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHH-HHHhcccCCCCceEEECCccccccc
Confidence 468999999987 6899999999999999999999999999 999997 34555443322
Q ss_pred cchhcccCCCeEEEccCc--eecceecCcchhHHHh--------------------------------------------
Q 026304 67 SSKDTRYAIDSVVTHDGA--KLPCWALPELTSFRQK-------------------------------------------- 100 (240)
Q Consensus 67 ~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~-------------------------------------------- 100 (240)
. ..|...+.++||++. +-|.+.+...++...+
T Consensus 82 y--~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 82 Y--SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred h--HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 1 223344578999864 2222222211111100
Q ss_pred hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
++..++.+|++|+.||... +.++.+++.++.++.|++.|.|+.++..+ ..++|.|++|+. +++
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i----------KHi~D~viVM~EG~vv 229 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI----------KHISDQVLVMHEGEVV 229 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh----------hhhcccEEEEecCcee
Confidence 1234688999999999955 45899999999988999999999999999 999999999999 999
Q ss_pred ccCCcce
Q 026304 174 LCGKRAF 180 (240)
Q Consensus 174 ~~g~~~~ 180 (240)
..|++++
T Consensus 230 E~G~t~~ 236 (267)
T COG4167 230 ERGSTAD 236 (267)
T ss_pred ecCChhh
Confidence 8998765
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.86 E-value=2.9e-22 Score=181.50 Aligned_cols=160 Identities=20% Similarity=0.180 Sum_probs=125.9
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|.++++++.- ++++||++.+|+.++|+||||||||||. |+|.|. .++|.++..+++....+
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa-R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~-- 410 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA-RLLVGIWPPTSGSVRLDGADLRQWDREQLGR-- 410 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH-HHHHcccccCCCcEEecchhhhcCCHHHhcc--
Confidence 68999998853 9999999999999999999999999999 999996 45777776665544333
Q ss_pred CCeEEEccCceecceecCcchh-HHH-----------h----------h-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTS-FRQ-----------K----------L-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~-~~~-----------~----------~-------------------------~~~l~~ 107 (240)
.+||++|+-.+|+.. +.+|.. |.. + + .+.+..
T Consensus 411 hiGYLPQdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 411 HIGYLPQDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred ccCcCcccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 469999999988863 433322 210 0 0 112588
Q ss_pred cCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|.+++||||.+ . ..+.+.|.++++ +|.|+|++||.++.+ ..+|+|++|++ ++...|+.++
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs~L-----------~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPSAL-----------ASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHHHH-----------hhcceeeeecCChHHhcCCHHH
Confidence 999999999966 2 358888999887 799999999999876 88999999999 9999998876
Q ss_pred eeeee
Q 026304 181 FTLRK 185 (240)
Q Consensus 181 ~~~~~ 185 (240)
.....
T Consensus 558 VLa~~ 562 (580)
T COG4618 558 VLAKV 562 (580)
T ss_pred HHHHh
Confidence 54333
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=3.9e-22 Score=189.46 Aligned_cols=141 Identities=19% Similarity=0.065 Sum_probs=94.2
Q ss_pred ceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------------------hCCceEEeeccch
Q 026304 15 QVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------------------DNGRNIAMIKSSK 69 (240)
Q Consensus 15 ~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------------------~~g~~i~~~~~~~ 69 (240)
+++++| |++++ .+++|++++|+||||||||||+ ++|+|+. ++|+++..+....
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLl-kiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAV-KILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 367777 89999 8999999999999999999999 9999972 2222221110000
Q ss_pred hcccCCCeEEEc----cCceecceecCcchhHH----------Hh-----------------------hchhhhccCcEE
Q 026304 70 DTRYAIDSVVTH----DGAKLPCWALPELTSFR----------QK-----------------------LGDDAYAKLDVI 112 (240)
Q Consensus 70 ~~~~~~~~~v~q----~~~~~~~~~~~~~~~~~----------~~-----------------------~~~~l~~~p~ll 112 (240)
.......++.+| .+.++.. ++.+++... .. ++..++.+|++|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKG-KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred hccCcceeecccchhhhhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 000001123333 2222211 333322110 00 112258899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|||||++ +..+.++|+++++ |.|||++|||++++ ..+||++++|++
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l----------~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVL----------DYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 9999988 3478888888864 89999999999999 999999999975
No 355
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=3.6e-22 Score=197.36 Aligned_cols=167 Identities=17% Similarity=0.146 Sum_probs=135.6
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
..+.++++++.| ++++|+.|++||+.|++|||||||||++ +++.|.. +.|.++.........+ .
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f-~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~-~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTF-KMLTGETKPTSGEALIKGHDITVSTDFQQVR-K 640 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhH-HHHhCCccCCcceEEEecCccccccchhhhh-h
Confidence 468899999999 5799999999999999999999999999 9999972 2333333221111122 3
Q ss_pred CCeEEEccCceecceecCcchhHHHhhch------------------------------------------hhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKLGD------------------------------------------DAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~l~~~p~ll 112 (240)
..||.||.+.+++.+|..|.+.+..++.| .++.+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 35999999999999999988877765422 148899999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeeee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLRK 185 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~~ 185 (240)
+||||++ ++.+++++.++.+ .|+.||++||.++++ ..+|||+.+|.+ +...-|++..+..++
T Consensus 721 ~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~----------EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEA----------EALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHH----------HHHhhhhheeecCeeEEecChHHHHhhc
Confidence 9999977 5689999999987 677999999999999 999999999999 887779998888777
Q ss_pred cCC
Q 026304 186 TEE 188 (240)
Q Consensus 186 ~~~ 188 (240)
..+
T Consensus 790 G~g 792 (885)
T KOG0059|consen 790 GSG 792 (885)
T ss_pred CCc
Confidence 543
No 356
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=5.4e-22 Score=195.48 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=124.9
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++||+|.| ++|+||++++|+.++|+||+||||||.+ .+|.++ .++|.++..++.+..++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI-~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~- 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI-SLLERFYDPDAGKVKIDGVDIKDLNLKWLRK- 1064 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCcccccCCHHHHHH-
Confidence 59999999999 9999999999999999999999999998 999886 46788887776544322
Q ss_pred CCCeEEEccCceecceecCcchhHHH------------h----------h-------------------------chhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ------------K----------L-------------------------GDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~------------~----------~-------------------------~~~l~ 106 (240)
..++|.|++.+|.. |+.+|..+.. + + ++.++
T Consensus 1065 -~i~lVsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1065 -QIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred -hcceeccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 35899999999875 4554443320 0 0 12269
Q ss_pred ccCcEEEEcCccC-h----H-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF-F----E-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~-~----~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
++|++|||||.|+ . + -+.+.|.+.. .|+|.|++.|.+..+ +.||.|.++++ +++..|+.+
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTI-----------qnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTI-----------QNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhh-----------hcCCEEEEEECCEEEecccHH
Confidence 9999999999999 2 2 3555666654 589999999999998 77999999999 999999988
Q ss_pred eeee
Q 026304 180 FFTL 183 (240)
Q Consensus 180 ~~~~ 183 (240)
++..
T Consensus 1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred HHHh
Confidence 7654
No 357
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.86 E-value=1.7e-21 Score=187.61 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=100.0
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEc
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.+|+++|+++.| ++++||++++||+++|+||||||||||+ ++|+|+. ..+..+.. + .+ ...+|++|
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl-~lL~Gl~~~~~G~i~~-~----~~-~~i~~v~Q 522 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLF-RILGELWPVYGGRLTK-P----AK-GKLFYVPQ 522 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEee-c----CC-CcEEEECC
Confidence 479999999987 8999999999999999999999999999 9999973 22222321 1 11 23478888
Q ss_pred cCceecceecCcchhH--------------------HHh--------------------------------hchhhhccC
Q 026304 82 DGAKLPCWALPELTSF--------------------RQK--------------------------------LGDDAYAKL 109 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~--------------------~~~--------------------------------~~~~l~~~p 109 (240)
++.+++. ++.++..+ ... ++..++.+|
T Consensus 523 ~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p 601 (659)
T TIGR00954 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP 601 (659)
T ss_pred CCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence 7765543 33332211 000 011258999
Q ss_pred cEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 110 DVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 110 ~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++|||||+ .+ +..+.+.++.++.|.|+|++||+++.+ .+||++++|+.
T Consensus 602 ~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-----------~~~d~il~l~~ 653 (659)
T TIGR00954 602 QFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-----------KYHEYLLYMDG 653 (659)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-----------HhCCEEEEEeC
Confidence 9999999988 22 222223333233589999999999876 78999999964
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=1.9e-21 Score=199.58 Aligned_cols=148 Identities=18% Similarity=0.089 Sum_probs=112.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch------hCCceEEeeccc----hhcccCCCeEEEccCceeccee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES------DNGRNIAMIKSS----KDTRYAIDSVVTHDGAKLPCWA 90 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~------~~g~~i~~~~~~----~~~~~~~~~~v~q~~~~~~~~~ 90 (240)
|+|+|+++++||+++|+||||||||||| ++|+|.. ..|. +...... .....+..+|++|++..++.+|
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLL-k~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLL-KTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 8999999999999999999999999999 9999963 2222 2221110 0111223589999888888777
Q ss_pred cCcchhHHHh---------------------------h----------------------------chhhhccCcEEEEc
Q 026304 91 LPELTSFRQK---------------------------L----------------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 91 ~~~~~~~~~~---------------------------~----------------------------~~~l~~~p~lllLD 115 (240)
+.+++.+... + +..++.+|++++||
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 7665543210 0 01158899999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|||+ ..++++.|++++++.|+|||+++|++ +.+ ..++|++++|++ ++++.|+++.
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i----------~~l~D~v~~L~~G~iv~~G~~~~ 297 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDA----------YELFDKVIVLYEGYQIYFGPADK 297 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH----------HHhhceEEEEeCCeEEEECCHHH
Confidence 9988 45799999999875689999999997 577 899999999999 9999998754
No 359
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.5e-21 Score=176.30 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=124.4
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
-++++|++|.| |+||||++.+|+.++++||+|+||||++ |++-++ .++|+++....++.. | +.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTim-RlLfRffdv~sGsI~iDgqdIrnvt~~SL-R-s~ 613 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIM-RLLFRFFDVNSGSITIDGQDIRNVTQSSL-R-SS 613 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHH-HHHHHHhhccCceEEEcCchHHHHHHHHH-H-Hh
Confidence 69999999999 9999999999999999999999999999 999775 567888766544322 2 34
Q ss_pred CeEEEccCceecceecCcc---------hhHHH---------hh-------------------c---------hhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPEL---------TSFRQ---------KL-------------------G---------DDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~---------~~~~~---------~~-------------------~---------~~l~~~p 109 (240)
+|+|||+..+|++.-..+. .+..+ ++ + +.++.+|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 6999999988877433311 11110 00 1 1258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
.+++|||.|+ ...+...|.+++. +.|-|++.|.++-+ -.||.|+++++ +++..|..+++.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTi-----------vnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTI-----------VNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehhe-----------ecccEEEEEeCCeEeecCcHHHHH
Confidence 9999999988 2367778888875 77889999999987 56999999999 888889887766
Q ss_pred eee
Q 026304 183 LRK 185 (240)
Q Consensus 183 ~~~ 185 (240)
.|.
T Consensus 761 ~rd 763 (790)
T KOG0056|consen 761 KRD 763 (790)
T ss_pred hcc
Confidence 553
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=7.1e-21 Score=177.73 Aligned_cols=146 Identities=18% Similarity=0.111 Sum_probs=100.2
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeE
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
....++++|++++| ++++||.|.+|+.++|+||||+|||||| ++|.|.. ..|.-.. ... . ..+|
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLl-k~l~g~~~~~~G~v~~--g~~----v-~igy 389 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL-KLLAGELGPLSGTVKV--GET----V-KIGY 389 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHH-HHHhhhcccCCceEEe--CCc----e-EEEE
Confidence 35689999999999 7899999999999999999999999999 9997742 1221110 000 0 1245
Q ss_pred EEccCc-eecceecCcc----------hhHHH---h------------------------hchhhhccCcEEEEcCccC-
Q 026304 79 VTHDGA-KLPCWALPEL----------TSFRQ---K------------------------LGDDAYAKLDVIGIDEAQF- 119 (240)
Q Consensus 79 v~q~~~-~~~~~~~~~~----------~~~~~---~------------------------~~~~l~~~p~lllLDEP~~- 119 (240)
..|+.. +.+..++.+. ..... + ++..++.+|.+|||||||+
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 555431 1122222111 01111 0 1122578999999999999
Q ss_pred hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 120 FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 120 ~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.+ +-++.|.+...+..-|||+||||..|+ ..+|++++.+.+
T Consensus 470 LDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl----------~~va~~i~~~~~ 511 (530)
T COG0488 470 LDIESLEALEEALLDFEGTVLLVSHDRYFL----------DRVATRIWLVED 511 (530)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCHHHH----------HhhcceEEEEcC
Confidence 33 455556555555778999999999999 999999999985
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=3.4e-21 Score=197.77 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=111.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CCceEEeeccc--hhcccCCCeEEEccCceecceecCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NGRNIAMIKSS--KDTRYAIDSVVTHDGAKLPCWALPE 93 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g~~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~~~~~ 93 (240)
|+|+|+.+++|++++|+||||||||||| ++|+|... .|. +...... .....+..+|++|+...++.+|+.+
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLL-k~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLL-LALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHH-HHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 9999999999999999999999999999 99999732 222 2211110 1111223589999887777777665
Q ss_pred chhHHHh-----------------------------------------------------h-------------------
Q 026304 94 LTSFRQK-----------------------------------------------------L------------------- 101 (240)
Q Consensus 94 ~~~~~~~-----------------------------------------------------~------------------- 101 (240)
++.+... +
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 5433210 0
Q ss_pred ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccce
Q 026304 102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTV 165 (240)
Q Consensus 102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i 165 (240)
+..++.+|+++++|||++ ..++++.|+++++..|.|||+++|++ +++ ..++|+|
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i----------~~lfD~v 408 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET----------FDLFDDI 408 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH----------HHHhheE
Confidence 011488999999999988 34799999999865689999999997 577 8999999
Q ss_pred eeecc-eeeccCCcce
Q 026304 166 TKLTA-RCELCGKRAF 180 (240)
Q Consensus 166 ~~l~~-~~~~~g~~~~ 180 (240)
++|++ ++++.|+++.
T Consensus 409 ilL~~G~ivy~G~~~~ 424 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDH 424 (1470)
T ss_pred EEeeCceEEEeCCHHH
Confidence 99999 9999998754
No 362
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.84 E-value=2e-21 Score=155.07 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=111.8
Q ss_pred eEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCCCeEEEc
Q 026304 10 AVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 10 ~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
++.++|++.+- |-.+|.++..||++-++||||||||||| -.++|+ .+.|+++..+......|.+ .|+.|
T Consensus 3 l~qln~v~~~tRL~plS~qv~aGe~~HliGPNGaGKSTLL-A~lAGm~~~sGsi~~~G~~l~~~~~~eLArhR--AYLsQ 79 (248)
T COG4138 3 LMQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGSGSIQFAGQPLEAWSATELARHR--AYLSQ 79 (248)
T ss_pred eeeeccccccccccccccccccceEEEEECCCCccHHHHH-HHHhCCCCCCceEEECCcchhHHhHhHHHHHH--HHHhh
Confidence 67899999875 9999999999999999999999999999 999997 3456665554444433332 45555
Q ss_pred cCceecceecCcchhH--------------------HHhh--------chh----------------hhccCcEEEEcCc
Q 026304 82 DGAKLPCWALPELTSF--------------------RQKL--------GDD----------------AYAKLDVIGIDEA 117 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~--------------------~~~~--------~~~----------------l~~~p~lllLDEP 117 (240)
...-...+.++..+.+ .+++ +++ +-...++|++|||
T Consensus 80 qq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 80 QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred ccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 4322222222211111 0111 111 1123469999999
Q ss_pred cC-----hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 118 QF-----FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 118 ~~-----~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
.+ ++ .+..+|.+++. .|.+|||++||++.. .+.||+++.++. ++..||+.++
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNhT----------LrhA~~~wLL~rG~l~~~G~~~e 218 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNHT----------LRHAHRAWLLKRGKLLASGRREE 218 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhhH----------HHHHHHHHHHhcCeEEeecchhh
Confidence 77 22 46667788887 899999999999999 999999999999 9999998765
No 363
>PLN03232 ABC transporter C family member; Provisional
Probab=99.84 E-value=7.6e-21 Score=196.60 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=112.9
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEE
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v 79 (240)
.++++|++++| |+|+||++++|+.++|+||+|||||||+ ++|.|... .|... . ..+..+|+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~G~i~-~-------~~~~Iayv 684 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI-SAMLGELSHAETSSV-V-------IRGSVAYV 684 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCcccCCCEE-E-------ecCcEEEE
Confidence 59999999998 8999999999999999999999999999 99999732 34322 1 12235899
Q ss_pred EccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcEEE
Q 026304 80 THDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDVIG 113 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~lll 113 (240)
+|++.+++. |+.+|..+... +++.++.+|+++|
T Consensus 685 ~Q~p~Lf~g-TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL 763 (1495)
T PLN03232 685 PQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763 (1495)
T ss_pred cCccccccc-cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999988875 56555443110 0122589999999
Q ss_pred EcCccC-h-----HHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF-F-----EDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~-~-----~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ . ..+++ .+.... .++|+|++||+++.+ ..||+|++|++ ++...|+.+++
T Consensus 764 LDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l-----------~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 764 FDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFL-----------PLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred EcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhH-----------HhCCEEEEEeCCEEEEecCHHHH
Confidence 999988 2 23433 333332 479999999999876 67999999999 99988987654
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=3.5e-20 Score=156.64 Aligned_cols=52 Identities=29% Similarity=0.270 Sum_probs=45.1
Q ss_pred hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304 105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL 168 (240)
Q Consensus 105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l 168 (240)
++.+| ++|+||||++ ...+.++|+++++ .|.|||++|||++++ .+||++++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~-----------~~~d~i~~l 211 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTI-----------RAADHVIDI 211 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHH-----------HhCCEEEEe
Confidence 56787 5999999987 4578899998876 699999999999877 489999999
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=1.9e-20 Score=194.32 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=113.2
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEE
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v 79 (240)
.++++|++++| |+|+||++++|+.++|+||+|||||||+ ++|.|.. ..|..+.. .+..+|+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~GG~I~l--------~~~Iayv 684 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-SAMLGELPPRSDASVVI--------RGTVAYV 684 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHH-HHHHHhhccCCCceEEE--------cCeEEEE
Confidence 59999999998 8899999999999999999999999999 9999973 23123321 1235899
Q ss_pred EccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcEEE
Q 026304 80 THDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDVIG 113 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~lll 113 (240)
+|++.+++. |+.+|..+... +++.++.+|+++|
T Consensus 685 ~Q~p~Lfng-TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL 763 (1622)
T PLN03130 685 PQVSWIFNA-TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI 763 (1622)
T ss_pred cCccccCCC-CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 999988875 56655443110 0122589999999
Q ss_pred EcCccC-h-----HHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF-F-----EDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~-~-----~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ . ..++ +.+.... .++|+|++||+++.+ ..||+|++|++ ++...|+.+++
T Consensus 764 LDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l-----------~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 764 FDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFL-----------SQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred ECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHH-----------HhCCEEEEEeCCEEEEeCCHHHH
Confidence 999988 2 2343 3444443 479999999999876 77999999999 99988987654
No 366
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.82 E-value=3.3e-20 Score=192.13 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=110.2
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.++++|++++| |+|+||++++|++++|+||||||||||+ ++|.|+. ..|. +.. . +..+|++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl-~~l~g~~~~~~G~-i~~-~-------g~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGH-VHM-K-------GSVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCccCCcE-EEE-C-------CEEEEEc
Confidence 79999999988 8899999999999999999999999999 9999973 2342 221 1 1247888
Q ss_pred ccCceecceecCcchhHHH----------------------------------------------hhchhhhccCcEEEE
Q 026304 81 HDGAKLPCWALPELTSFRQ----------------------------------------------KLGDDAYAKLDVIGI 114 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~l~~~p~lllL 114 (240)
|++.+++ .|+.+|..+.. .+++.++.+|++++|
T Consensus 706 Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL 784 (1522)
T TIGR00957 706 QQAWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 784 (1522)
T ss_pred CCccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8876654 24444332200 001225899999999
Q ss_pred cCccC------hHHHHHHHHHHH-hcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAA-DHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~-~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ ...+++.+.+.. ...++|+|++||+++.+ . .||+|++|++ ++...|+++++
T Consensus 785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l----------~-~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL----------P-QVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh----------h-hCCEEEEecCCeEEeeCCHHHH
Confidence 99988 235666665321 11478999999999987 4 5999999999 88888876543
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6.4e-20 Score=145.88 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=106.7
Q ss_pred ceEEEcceeEee------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEe-----------
Q 026304 9 AAVTTNQVNSGR------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAM----------- 64 (240)
Q Consensus 9 ~~l~~~~ls~~~------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~----------- 64 (240)
..|.++|++|+| ++++||+++.||.+++-||+|||||||| |++.+- ..++..+..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStll-r~LYaNY~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLL-RSLYANYLPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHH-HHHHhccCCCCceEEEEeCcchhhhhc
Confidence 368999999998 7899999999999999999999999999 999884 233222211
Q ss_pred eccch--hcccCCCeEEEccCceecceecCcchh-------------------HHHhh---------------ch-----
Q 026304 65 IKSSK--DTRYAIDSVVTHDGAKLPCWALPELTS-------------------FRQKL---------------GD----- 103 (240)
Q Consensus 65 ~~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~-------------------~~~~~---------------~~----- 103 (240)
..+.. ..|....|||+|.-...|..+..+... +..++ +|
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 11111 223344588888544444332221110 01110 11
Q ss_pred ----hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 104 ----DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 104 ----~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
-++.+.++|+|||||+ +.-++++|.+.+. .|..++=+=||-+.. ...|||++.+..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeevr----------e~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEVR----------EAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHHH----------HHHhhheeeccc
Confidence 2578999999999977 4568899998876 799999999999888 899999998764
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.8e-20 Score=149.88 Aligned_cols=134 Identities=20% Similarity=0.097 Sum_probs=96.6
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
+++.+|++... +.++||++.+||++.|.||||||||||| |+|+|+. ++|..+...+... + ...
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLL-RilaGLl~p~~G~v~~~~~~i~~~~~~~--~-~~l 77 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLL-RILAGLLRPDAGEVYWQGEPIQNVRESY--H-QAL 77 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHH-HHHHcccCCCCCeEEecCCCCccchhhH--H-HHH
Confidence 67888898876 8999999999999999999999999999 9999982 2222222211100 0 112
Q ss_pred eEEEccCceecceecCcchhHHHhhch---------------------------------------hhhccCcEEEEcCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKLGD---------------------------------------DAYAKLDVIGIDEA 117 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~l~~~p~lllLDEP 117 (240)
-|+-+.+.+-+.+|+.||+.|...+.+ ..+..+++.|||||
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 355566677788899998888765311 13789999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
++ ...+-.++..-+. .|-.||.+||..-..
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 77 2245556666665 688999999987544
No 369
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.81 E-value=5.9e-20 Score=189.87 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=107.0
Q ss_pred EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCce
Q 026304 11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAK 85 (240)
Q Consensus 11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~ 85 (240)
++++++++.+ |+|+||+|++|++++|+||||||||||| ++|.|+. ..|. +.. . +..+|++|++.+
T Consensus 429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl-~~l~G~~~~~~G~-i~~-~-------g~iayv~Q~~~l 498 (1490)
T TIGR01271 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL-MMIMGELEPSEGK-IKH-S-------GRISFSPQTSWI 498 (1490)
T ss_pred ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEE-C-------CEEEEEeCCCcc
Confidence 4555665543 8999999999999999999999999999 9999973 2332 221 1 124788888877
Q ss_pred ecceecCcchhHHH------------------h----------------------------hchhhhccCcEEEEcCccC
Q 026304 86 LPCWALPELTSFRQ------------------K----------------------------LGDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 86 ~~~~~~~~~~~~~~------------------~----------------------------~~~~l~~~p~lllLDEP~~ 119 (240)
++. |+.+|..+.. . ++..++.+|+++|||||++
T Consensus 499 ~~~-Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 499 MPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred CCc-cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 764 5555443210 0 0112589999999999988
Q ss_pred ------hHHHHHH-HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 ------FEDLYEF-CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 ------~~~i~~~-l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
...+++. +.++. .++|+|++||+++.+ . .||+|++|++ ++...|+++.+
T Consensus 578 aLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~----------~-~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHL----------K-KADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHH----------H-hCCEEEEEECCEEEEEcCHHHH
Confidence 3356653 45554 489999999999987 4 5999999999 88888876543
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2.7e-19 Score=179.69 Aligned_cols=156 Identities=17% Similarity=0.048 Sum_probs=121.1
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.|+++|++.+| |++|||+|++||.+||+|..|||||||+ .++-++ .++|.++..+.-+. .|.+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~-~aLFRl~e~~~G~I~IDgvdI~~igL~d-LRsr 1215 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI-LALFRLVEPAEGEILIDGVDISKIGLHD-LRSR 1215 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH-HHHHHhcCccCCeEEEcCeecccccHHH-HHhc
Confidence 69999999999 9999999999999999999999999998 888775 46788887765433 3333
Q ss_pred CCeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~ 108 (240)
.+++||++.+|.. |+..|++-... +++.++++
T Consensus 1216 -lsIIPQdPvLFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1216 -LSIIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred -CeeeCCCCceecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 4899999999876 34433221100 12336899
Q ss_pred CcEEEEcCccC-----hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF-----FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~-----~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
.+||+|||+|+ .+ .+.+.|++.- .+.||+.+.|.++-+ --||||++|++ ++...++|..+
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TV-----------md~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTV-----------MDSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchh-----------hhcCeEEEeeCCeEeecCChHHH
Confidence 99999999998 22 2444555443 378999999999998 45999999999 99999999865
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 1361 l 1361 (1381)
T KOG0054|consen 1361 L 1361 (1381)
T ss_pred H
Confidence 4
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=2.5e-19 Score=154.15 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=49.2
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeecc
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCELC 175 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~~ 175 (240)
|++++||||++ ...+.+.|+++.+ .|.|||++||+++++ . .||+++.| ++ +++++
T Consensus 191 p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i----------~-~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 191 KTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVI----------K-CADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------H-hCCEEEEecCCcCCCCCEEEEe
Confidence 79999999988 3578888998886 689999999999988 4 69999999 56 77777
Q ss_pred CCc
Q 026304 176 GKR 178 (240)
Q Consensus 176 g~~ 178 (240)
|++
T Consensus 259 Gt~ 261 (261)
T cd03271 259 GTP 261 (261)
T ss_pred CCC
Confidence 653
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.78 E-value=9.3e-19 Score=145.01 Aligned_cols=134 Identities=15% Similarity=0.108 Sum_probs=85.9
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc---eEEeeccc--hhcccCCCeEEEccCceecce
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR---NIAMIKSS--KDTRYAIDSVVTHDGAKLPCW 89 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~---~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~ 89 (240)
+++++++.+| +++|+||||||||||+ ++|+|+. +.+. ++...... ........+++||++..+...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNII-DAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHH-HHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 7899999999 9999999999999999 9998762 1111 11111110 001112348899976543111
Q ss_pred -ecCcchhHHH----------h----------hchhhh----ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE
Q 026304 90 -ALPELTSFRQ----------K----------LGDDAY----AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV 138 (240)
Q Consensus 90 -~~~~~~~~~~----------~----------~~~~l~----~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv 138 (240)
.......... . ++..++ .+|++++||||++ ...+.+.|+++.+ +.+|
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~ti 169 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQF 169 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEE
Confidence 0000000000 0 011122 4669999999987 3468888888754 6899
Q ss_pred EEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 139 VVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 139 i~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|++||+++++ .+||+++.+..
T Consensus 170 IiitH~~~~~-----------~~~d~v~~~~~ 190 (197)
T cd03278 170 IVITHRKGTM-----------EAADRLYGVTM 190 (197)
T ss_pred EEEECCHHHH-----------hhcceEEEEEe
Confidence 9999999876 58999998875
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.5e-20 Score=161.37 Aligned_cols=151 Identities=20% Similarity=0.191 Sum_probs=105.2
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++|+.+.| +.+||++|++||++.|+|.||||||||+ +.+.|+ .++|+++..-... +.| +.
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~-~LLtGL~~PqsG~I~ldg~pV~~e~le-dYR-~L 398 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVSAEQLE-DYR-KL 398 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHH-HHHhcccCCCCCceeECCccCCCCCHH-HHH-HH
Confidence 59999999999 7799999999999999999999999999 999997 3456655432221 111 12
Q ss_pred CeEEEccCceecceecCcc------hhH-HHhh--------------------c--------hhhhccCcEEEEcC----
Q 026304 76 DSVVTHDGAKLPCWALPEL------TSF-RQKL--------------------G--------DDAYAKLDVIGIDE---- 116 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~------~~~-~~~~--------------------~--------~~l~~~p~lllLDE---- 116 (240)
..-+|.|..+|+.+--.++ ... ..++ | -.++.+.+++++||
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD 478 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD 478 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence 2334555555544322221 110 0000 0 11478999999999
Q ss_pred --ccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 117 --AQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 117 --P~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
|.|++.+.+.+.-+.++.|+||+.+|||-..- ..|||++.+.+ +|..
T Consensus 479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-----------~~ADrll~~~~G~~~e 528 (546)
T COG4615 479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-----------IHADRLLEMRNGQLSE 528 (546)
T ss_pred CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-----------hhHHHHHHHhcCceee
Confidence 45566777666555455899999999997664 78999999999 7764
No 374
>PTZ00243 ABC transporter; Provisional
Probab=99.77 E-value=7.8e-19 Score=181.98 Aligned_cols=138 Identities=28% Similarity=0.291 Sum_probs=99.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~ 98 (240)
|+|+||+|++|++++|+||||||||||| ++|.|+. ..|. +.. + +..+|++|++.+++ .|+.+|..+.
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL-~~i~G~~~~~~G~-i~~-------~-~~i~yv~Q~~~l~~-~Tv~enI~~~ 744 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLL-QSLLSQFEISEGR-VWA-------E-RSIAYVPQQAWIMN-ATVRGNILFF 744 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcE-EEE-------C-CeEEEEeCCCccCC-CcHHHHHHcC
Confidence 8999999999999999999999999999 9999973 2343 221 1 23589999887664 3555443221
Q ss_pred H---------------------hh-------------------------chhhhccCcEEEEcCccC-h-----HHHHHH
Q 026304 99 Q---------------------KL-------------------------GDDAYAKLDVIGIDEAQF-F-----EDLYEF 126 (240)
Q Consensus 99 ~---------------------~~-------------------------~~~l~~~p~lllLDEP~~-~-----~~i~~~ 126 (240)
. .+ ...++.+|+++|||||++ . ..+++.
T Consensus 745 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 745 DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 0 00 112589999999999988 2 234443
Q ss_pred HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 127 CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 127 l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+..... .|+|+|++||+++.+ ..||+|++|++ ++...|+.+.+
T Consensus 825 ~~~~~~-~~~TvIlvTH~~~~~-----------~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 825 CFLGAL-AGKTRVLATHQVHVV-----------PRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHHhh-CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEecCHHHH
Confidence 222122 489999999999987 57999999999 88888887553
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=158.92 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=120.5
Q ss_pred CCceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304 7 KPAAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~ 77 (240)
.++.+++++++..- ++|+||++.+||+++|.|-.|||+|-|+ ++|.|. .++|+++...++....+.+ .+
T Consensus 260 ~~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~-~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G-i~ 337 (500)
T COG1129 260 GEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELA-RALFGARPASSGEILLDGKPVRIRSPRDAIKAG-IA 337 (500)
T ss_pred CCcEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHH-HHHhCCCcCCCceEEECCEEccCCCHHHHHHcC-CE
Confidence 35689999999875 8999999999999999999999999999 999996 4567777665554444444 36
Q ss_pred EEEccC---ceecceecCcchhHHHh------------------------------------------------hchhhh
Q 026304 78 VVTHDG---AKLPCWALPELTSFRQK------------------------------------------------LGDDAY 106 (240)
Q Consensus 78 ~v~q~~---~~~~~~~~~~~~~~~~~------------------------------------------------~~~~l~ 106 (240)
|++.+. .++..+++.+|..+... ++..+.
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 777543 23444444443322200 012258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
.+|++|||||||- ..+++++++++++ +|++||++|-+++++ ..+||||++|++ ++..
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSElpEl----------l~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSELPEL----------LGLSDRILVMREGRIVG 481 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCChHHH----------HhhCCEEEEEECCEEEE
Confidence 8999999999987 5689999999998 799999999999999 999999999999 7764
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.76 E-value=4.3e-18 Score=142.52 Aligned_cols=147 Identities=18% Similarity=0.100 Sum_probs=91.4
Q ss_pred eEEEcceeEee--ecCCCCccc-CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec----cch---hcccCCCeEE
Q 026304 10 AVTTNQVNSGR--DRVGLPHRN-SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK----SSK---DTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~--l~~vsl~i~-~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~----~~~---~~~~~~~~~v 79 (240)
.|+++|+. +| -.+++|+.. +|++++|+||||||||||+ ++|.+..+ |....... ... .......+++
T Consensus 5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll-~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (213)
T cd03279 5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTIL-DAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFT 81 (213)
T ss_pred EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHH-HHheeeEe-cCccccccchhHHHHhcCCCccEEEEEE
Confidence 57888888 65 456777654 5899999999999999999 99986322 11111000 000 0001112556
Q ss_pred EccCcee------cceecCcchh--------HHHh-----------------hchhhh----------ccCcEEEEcCcc
Q 026304 80 THDGAKL------PCWALPELTS--------FRQK-----------------LGDDAY----------AKLDVIGIDEAQ 118 (240)
Q Consensus 80 ~q~~~~~------~~~~~~~~~~--------~~~~-----------------~~~~l~----------~~p~lllLDEP~ 118 (240)
+|..... ..++..+... +... +...++ .+|++++||||+
T Consensus 82 f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~ 161 (213)
T cd03279 82 FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF 161 (213)
T ss_pred EEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence 6553221 0111000000 0000 011133 267999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+ ...+.+.+.++++ .+.|||++|||++++ ..+||+++++++
T Consensus 162 ~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~----------~~~~~~i~~~~~ 208 (213)
T cd03279 162 GTLDPEALEAVATALELIRT-ENRMVGVISHVEELK----------ERIPQRLEVIKT 208 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHH----------HhhCcEEEEEec
Confidence 7 3468888888876 589999999999999 899999999875
No 377
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.7e-19 Score=156.03 Aligned_cols=157 Identities=18% Similarity=0.087 Sum_probs=118.2
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.+.+++++|.| |+++||++++|+.++++||+|+||||++ +++.++ .++|+++....+... ++.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~-rllfRFyD~~sG~I~id~qdir~vtq~sl--R~a 338 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL-RLLFRFYDVNSGSITIDGQDIRDVTQQSL--RRA 338 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHH-HHHHHHhCCcCceEEEcchhHHHhHHHHH--HHH
Confidence 47889999999 9999999999999999999999999999 999775 356666654433322 234
Q ss_pred CeEEEccCceecceecCcc---------hhH------------HHhh-------------------------chhhhccC
Q 026304 76 DSVVTHDGAKLPCWALPEL---------TSF------------RQKL-------------------------GDDAYAKL 109 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~---------~~~------------~~~~-------------------------~~~l~~~p 109 (240)
+|+|||+..+|.+.-..++ .+. ...+ +..++.+|
T Consensus 339 Ig~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred hCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 6899999888765322110 000 0000 12258999
Q ss_pred cEEEEcCccCh------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 110 DVIGIDEAQFF------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 110 ~lllLDEP~~~------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
++|++||.|+. .++...|++.. .|.|-+++.|.++-+ --||.|++|++ +++..|+.+++.
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti-----------~~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTI-----------IDADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhc-----------cCCceEEEeeCCEEEecCcHHHHH
Confidence 99999999882 25777777776 488999999999987 56999999999 999999877654
No 378
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3.1e-19 Score=161.96 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=105.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceE---------EeeccchhcccCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNI---------AMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i---------~~~~~~~~~~~~~ 75 (240)
-|.+.+++..| |.+-++++..|..|||+|+||+|||||| |+|+.-.+.+-.+ .........-...
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLL-Raia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLL-RAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER 158 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHH-HHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence 47778888888 8999999999999999999999999999 9998743222111 0000000000000
Q ss_pred CeEEEccC-------------------------ceecceecCcchhHHHhhchhhhccCcEEEEcCccChH--HHHHHHH
Q 026304 76 DSVVTHDG-------------------------AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFE--DLYEFCC 128 (240)
Q Consensus 76 ~~~v~q~~-------------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~--~i~~~l~ 128 (240)
..++.++. +..+.-++.+.+.+...++.++..+||+|||||||+.. .-+.+|.
T Consensus 159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe 238 (582)
T KOG0062|consen 159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLE 238 (582)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHH
Confidence 01111111 11222234444555555667789999999999999943 2345666
Q ss_pred HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCc
Q 026304 129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKR 178 (240)
Q Consensus 129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~ 178 (240)
......+.|+|+||||-.|+ -..|..|+.+++ ++. +-|.-
T Consensus 239 ~yL~t~~~T~liVSHDr~FL----------n~V~tdIIH~~~~kL~~YkGN~ 280 (582)
T KOG0062|consen 239 NYLQTWKITSLIVSHDRNFL----------NTVCTDIIHLENLKLDYYKGNY 280 (582)
T ss_pred HHHhhCCceEEEEeccHHHH----------HHHHHHHHHHhhhhhhhhcCcH
Confidence 66555789999999999999 899999999998 765 34443
No 379
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=2e-18 Score=170.77 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=117.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-----eEEeeccchhcccCCCeEEEccCceecceecCcch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-----NIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT 95 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-----~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~ 95 (240)
|+||+--+.||-+++|+|+||||||||| ++|+|-...|. .+...+.....-.+..||+.|.+.-.+..||+|.+
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLL-dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL 885 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLL-DVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESL 885 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHH-HHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHH
Confidence 8999999999999999999999999999 99998522221 12222222122233469999998888999999877
Q ss_pred hHHHhhc-------------------------------------------------hhhhccC-cEEEEcCccC----h-
Q 026304 96 SFRQKLG-------------------------------------------------DDAYAKL-DVIGIDEAQF----F- 120 (240)
Q Consensus 96 ~~~~~~~-------------------------------------------------~~l~~~p-~lllLDEP~~----~- 120 (240)
.+.+.+. -+++.+| .+|+|||||+ +
T Consensus 886 ~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqa 965 (1391)
T KOG0065|consen 886 RFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQA 965 (1391)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHH
Confidence 7654431 1258899 8999999999 2
Q ss_pred -HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccCCcceee
Q 026304 121 -EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCGKRAFFT 182 (240)
Q Consensus 121 -~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g~~~~~~ 182 (240)
-.+++.++++++ .|.||+|+-|.++.. |.+..|+++.|+. ++++.|+..+-.
T Consensus 966 A~~i~~~lrkla~-tGqtIlCTIHQPS~~---------ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen 966 AAIVMRFLRKLAD-TGQTILCTIHQPSID---------IFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEecCCcHH---------HHHHHhHHHHHhcCCeEEEecCccccc
Confidence 269999999998 899999999998754 5888999999998 899999876543
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.75 E-value=7.9e-18 Score=140.17 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred EEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc----CchhCC-ceEEeeccch--hcccCCCeEEEccC
Q 026304 11 VTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR----SESDNG-RNIAMIKSSK--DTRYAIDSVVTHDG 83 (240)
Q Consensus 11 l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~----gl~~~g-~~i~~~~~~~--~~~~~~~~~v~q~~ 83 (240)
|+++|.. +|.+..++++.+| +++|+||||||||||+ ++|. |....+ ..+....... .......++++|+.
T Consensus 4 l~l~nfr-~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl-~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 4 LSIRNIR-SFHERSEIEFFSP-LTLIVGQNGAGKTTII-EALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred EEEECcc-cccCceEEecCCC-eEEEECCCCCCHHHHH-HHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 4555543 2234456677788 9999999999999999 9984 543221 1110000000 00111135666655
Q ss_pred -----ceecceecCcchhHH-----------------------------HhhchhhhccCcEEEEcCccC------hH-H
Q 026304 84 -----AKLPCWALPELTSFR-----------------------------QKLGDDAYAKLDVIGIDEAQF------FE-D 122 (240)
Q Consensus 84 -----~~~~~~~~~~~~~~~-----------------------------~~~~~~l~~~p~lllLDEP~~------~~-~ 122 (240)
.....+++.++..+. ..+...++.+|+++++|||++ .. .
T Consensus 81 ~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 81 NGKKYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred CCCEEEEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 122222333322110 001223467999999999987 35 6
Q ss_pred HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+.+++.++.++.+.+||++||+++.+ ..||+++.|..
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~~~~~-----------~~~d~i~~l~~ 197 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHDEELV-----------DAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEecHHHH-----------hhCCEEEEEee
Confidence 88888888763388999999998876 57999998865
No 381
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=3.6e-18 Score=140.28 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=109.8
Q ss_pred ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc------------hhCCceEEeecc
Q 026304 9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE------------SDNGRNIAMIKS 67 (240)
Q Consensus 9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl------------~~~g~~i~~~~~ 67 (240)
+.+.++|++..+ ++++|+++.+||+-+++|.+|||||-.. +.|+|. .++..++..+++
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiA-K~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIA-KAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHH-HHHhcccccceEEEhhhcccccchhhcCCh
Confidence 357788888876 7899999999999999999999999999 999996 344455555555
Q ss_pred chhccc--CCCeEEEccCce---------------ecceecCcch------------hHHHhh-----------------
Q 026304 68 SKDTRY--AIDSVVTHDGAK---------------LPCWALPELT------------SFRQKL----------------- 101 (240)
Q Consensus 68 ~~~~~~--~~~~~v~q~~~~---------------~~~~~~~~~~------------~~~~~~----------------- 101 (240)
..+++. ....++||++.. .+.+|..+.. .+..+.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 433221 112567776531 2223332211 111111
Q ss_pred ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304 102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT 166 (240)
Q Consensus 102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~ 166 (240)
+-.++.+|++|+.||||+ +.+++.+|.++.+..|+||++++||+..+ .++||+|-
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i----------s~W~d~i~ 230 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI----------SQWADKIN 230 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH----------HHHhhheE
Confidence 011478999999999988 45899999999887899999999999999 99999999
Q ss_pred eecc
Q 026304 167 KLTA 170 (240)
Q Consensus 167 ~l~~ 170 (240)
+|.-
T Consensus 231 VlYC 234 (330)
T COG4170 231 VLYC 234 (330)
T ss_pred EEEe
Confidence 9864
No 382
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.73 E-value=2.6e-17 Score=136.59 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=75.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~ 97 (240)
.++++++ .|++++|+||||||||||+ |+|+|.. ..|..+... .+++|...++..+++.++...
T Consensus 17 ~n~i~l~--~g~~~~ltGpNg~GKSTll-r~i~~~~~l~~~G~~v~a~-----------~~~~q~~~l~~~~~~~d~l~~ 82 (199)
T cd03283 17 ANDIDME--KKNGILITGSNMSGKSTFL-RTIGVNVILAQAGAPVCAS-----------SFELPPVKIFTSIRVSDDLRD 82 (199)
T ss_pred cceEEEc--CCcEEEEECCCCCChHHHH-HHHHHHHHHHHcCCEEecC-----------ccCcccceEEEeccchhcccc
Confidence 4566555 4799999999999999999 9999853 366654321 133444455666665554322
Q ss_pred HH--------hhchh--hhc--cCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhh
Q 026304 98 RQ--------KLGDD--AYA--KLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 98 ~~--------~~~~~--l~~--~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.. ++... .+. +|+++++|||+. ...+. .+++++.+ .+.++|++||+++.+
T Consensus 83 ~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 83 GISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELA 151 (199)
T ss_pred ccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHH
Confidence 11 11111 233 899999999966 22343 46777765 689999999999988
No 383
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.72 E-value=1.1e-18 Score=135.60 Aligned_cols=96 Identities=24% Similarity=0.232 Sum_probs=67.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP 92 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~ 92 (240)
|+++||++++|++++|+||||||||||+ ++|+|.. ++|.++.... ........++++|+..+++.+++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl-~~l~g~~~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLL-KALAGLLPPDSGSILINGKDISDID--IEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHH-HHHTTSSHESEEEEEETTEEGTTSH--HHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccce-eeecccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 6899999999999999999999999999 9999973 2333332211 111222358999987777777665
Q ss_pred cchh------HHHh---------------------------hchhhhccCcEEEEcCccC
Q 026304 93 ELTS------FRQK---------------------------LGDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 93 ~~~~------~~~~---------------------------~~~~l~~~p~lllLDEP~~ 119 (240)
++.. +... +...++.+|++|+||||++
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4421 0000 1223689999999999985
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=8.1e-18 Score=153.63 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=101.4
Q ss_pred CCCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceE-------Eeeccchh
Q 026304 6 LKPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNI-------AMIKSSKD 70 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i-------~~~~~~~~ 70 (240)
.+++.+.++|++|+| +++++|-+..++.++++||||+|||||| +++.|.. ..|.-. ..+.++..
T Consensus 385 ~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLl-Kl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLL-KLITGDLQPTIGMVSRHSHNKLPRYNQHLA 463 (614)
T ss_pred CCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhH-HHHhhccccccccccccccccchhhhhhhH
Confidence 456789999999999 7899999999999999999999999999 9999962 222211 11111000
Q ss_pred cccCCCeEEEccCceeccee-cCcchhH---HHh------------------------hchhhhccCcEEEEcCccC-hH
Q 026304 71 TRYAIDSVVTHDGAKLPCWA-LPELTSF---RQK------------------------LGDDAYAKLDVIGIDEAQF-FE 121 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~-~~~~~~~---~~~------------------------~~~~l~~~p~lllLDEP~~-~~ 121 (240)
....... +-.....+.+. ..+...+ ..+ +....+..|.+|+|||||+ .+
T Consensus 464 e~ldl~~--s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 464 EQLDLDK--SSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred hhcCcch--hHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence 0000000 00000000010 0000011 111 1222589999999999999 33
Q ss_pred -HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccCCc
Q 026304 122 -DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCGKR 178 (240)
Q Consensus 122 -~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g~~ 178 (240)
+-++.+.+..++..-+||++|||..++ ..+++++++..+ ...+.|+.
T Consensus 542 i~tid~laeaiNe~~Ggvv~vSHDfrlI----------~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 542 IETIDALAEAINEFPGGVVLVSHDFRLI----------SQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred chhHHHHHHHHhccCCceeeeechhhHH----------HHHHHHhHhhccCceeecCccH
Confidence 455666666555677899999999999 999999999988 33455554
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=152.65 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=100.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeec----cchh-------
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIK----SSKD------- 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~----~~~~------- 70 (240)
-+.+.++|+.| ++|++|++.+|+.+||+|||||||||+| ++|.|-... ..++..+. ++..
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L-~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFL-RAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHH-HHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 58899999998 8999999999999999999999999999 999984110 00000000 0000
Q ss_pred -------cccC--CCeEEEc-cC-c------eec-------------------------------ceecCcchhHHHhhc
Q 026304 71 -------TRYA--IDSVVTH-DG-A------KLP-------------------------------CWALPELTSFRQKLG 102 (240)
Q Consensus 71 -------~~~~--~~~~v~q-~~-~------~~~-------------------------------~~~~~~~~~~~~~~~ 102 (240)
.+.. ...+..+ +. . ++. ...+.+...++..++
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 0000 0000000 00 0 000 001112222223334
Q ss_pred hhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCC-EEEEEecChhhhhcccchHHHHHhhccceeeecc-e-eeccCC
Q 026304 103 DDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGK-TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R-CELCGK 177 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~-tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~-~~~~g~ 177 (240)
..+..+|++|||||||+ .+ +-...|.+...+... ++++++|+-+++ -.+|++|+.++. + +.+.|+
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfl----------n~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFL----------NGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhh----------hhHhhhhheecccceeeecCC
Confidence 55789999999999999 33 334455554433555 899999999999 899999999999 6 566676
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
-+++
T Consensus 304 ydqy 307 (614)
T KOG0927|consen 304 YDQY 307 (614)
T ss_pred HHHH
Confidence 5543
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.71 E-value=6.6e-17 Score=134.10 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=80.6
Q ss_pred ecCCCCcccCcE-EEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceec-ceecCcc-
Q 026304 21 DRVGLPHRNSGE-IHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP-CWALPEL- 94 (240)
Q Consensus 21 l~~vsl~i~~Ge-~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~-~~~~~~~- 94 (240)
..++||++.+|+ +++|+||||||||||| ++|.-.. -.|..+... .. .. .++..|....+. ...+.+.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll-~~i~~~~~~~~~G~~vp~~-~~--~~---~~~~~~~~~~lg~~~~l~~~~ 89 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTL-KTLGLLTLMAQSGLPIPAA-EG--SS---LPVFENIFADIGDEQSIEQSL 89 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHH-HHHHHHHHHHHcCCCcccc-cc--cc---CcCccEEEEecCchhhhhcCc
Confidence 468999999994 8999999999999999 9987111 111111100 00 00 111112110000 0001110
Q ss_pred ------hhHHHhhchhhhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304 95 ------TSFRQKLGDDAYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL 161 (240)
Q Consensus 95 ------~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ 161 (240)
......+. ..+.+|+++++|||+. ...+. .+++++.+ .+.++|++||+. .+ ..+
T Consensus 90 s~fs~g~~~~~~i~-~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~-~l----------~~~ 156 (200)
T cd03280 90 STFSSHMKNIARIL-QHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG-EL----------KAY 156 (200)
T ss_pred chHHHHHHHHHHHH-HhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH-HH----------HHH
Confidence 00011111 1257999999999977 23454 46677765 689999999985 45 689
Q ss_pred ccceeeecc-eeeccC
Q 026304 162 ADTVTKLTA-RCELCG 176 (240)
Q Consensus 162 ad~i~~l~~-~~~~~g 176 (240)
||+++.|++ .+.+.+
T Consensus 157 ~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 157 AYKREGVENASMEFDP 172 (200)
T ss_pred HhcCCCeEEEEEEEec
Confidence 999999988 766553
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=2.5e-17 Score=138.00 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=41.1
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|+++++|||++ ...+.+.++++++ +.++|++||+. .+ .++||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~-~~----------~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN-NM----------FELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH-HH----------HHhCCEEEEEEe
Confidence 479999999988 4578888888753 57899999995 45 689999999975
No 388
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=7.3e-17 Score=162.38 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=114.4
Q ss_pred CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--hhCCceEEeeccchhcccCCCe
Q 026304 8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--SDNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--~~~g~~i~~~~~~~~~~~~~~~ 77 (240)
...++++|.++++ |+||||++++|+.++|+||-|||||+|| .+|.|. ...|. +.. .+..+
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL-~AiLGEm~~~sG~-v~v--------~gsia 585 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLL-SAILGEMPKLSGS-VAV--------NGSVA 585 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHH-HHHhcCcccccce-EEE--------cCeEE
Confidence 3479999999986 8999999999999999999999999999 999995 33442 211 11247
Q ss_pred EEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcE
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDV 111 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~l 111 (240)
|++|.+++++. |+.+|..|... +++...++.|+
T Consensus 586 Yv~Q~pWI~ng-TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 586 YVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred EeccccHhhCC-cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 89998887765 56666544211 11225899999
Q ss_pred EEEcCccCh------HHH-HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304 112 IGIDEAQFF------EDL-YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 112 llLDEP~~~------~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~ 182 (240)
+|||.|.+. ..+ -+.++.+. +++|+|++||.++++ ..||.|++|++ ++...|+.+++.
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql~~L-----------~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQLQFL-----------PHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhh-----------hhCCEEEEecCCeEecccCHHHHH
Confidence 999999761 233 34444443 479999999999887 88999999999 999999876544
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=2.8e-16 Score=130.49 Aligned_cols=137 Identities=16% Similarity=0.085 Sum_probs=79.4
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecC----cc-hh
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP----EL-TS 96 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~----~~-~~ 96 (240)
-..++++.+|++++|+||||||||||| ++|.+..+.++.-... +....+. ++..| .+..+... +. ..
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll-~~i~~~~~~~~~g~~~-~~~~~~i---~~~dq---i~~~~~~~d~i~~~~s~ 91 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYL-RSIGLAVLLAQIGCFV-PAESASI---PLVDR---IFTRIGAEDSISDGRST 91 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHH-HHHHHHHHHHHcCCCc-ccccccc---CCcCE---EEEEecCcccccCCcee
Confidence 356677778999999999999999999 9998653311100011 1111111 11111 11111111 00 01
Q ss_pred HHH---hh--chhhhccCcEEEEcCccC------hHHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 97 FRQ---KL--GDDAYAKLDVIGIDEAQF------FEDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 97 ~~~---~~--~~~l~~~p~lllLDEP~~------~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
+.. ++ .-..+.+|+++++|||+. ...+.. +++.+.+ .+.++|++||+.+++ ..|++
T Consensus 92 ~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~-----------~~~~~ 159 (202)
T cd03243 92 FMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELA-----------DLPEQ 159 (202)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHH-----------HHhhc
Confidence 110 01 112357999999999966 223433 4555655 689999999998776 57777
Q ss_pred eeeecc-eeeccCCc
Q 026304 165 VTKLTA-RCELCGKR 178 (240)
Q Consensus 165 i~~l~~-~~~~~g~~ 178 (240)
+..+.. ++...+..
T Consensus 160 ~~~l~~~~~~~~~~~ 174 (202)
T cd03243 160 VPGVKNLHMEELITT 174 (202)
T ss_pred CCCeEEEEEEEEecC
Confidence 777776 66655543
No 390
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.63 E-value=3.1e-15 Score=122.57 Aligned_cols=156 Identities=19% Similarity=0.118 Sum_probs=102.1
Q ss_pred CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccc--hhcc---cCC
Q 026304 8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSS--KDTR---YAI 75 (240)
Q Consensus 8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~--~~~~---~~~ 75 (240)
...|++.++.|+| +-|+|++++.|....++|.||||||||| ++++|-.. .+..+...... .+.. .+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlL-KiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLL-KILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhH-HHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 4579999999999 7799999999999999999999999999 99999522 11111111100 0000 000
Q ss_pred CeEEE----------ccCceecceecCcch------hH--HHhh----------------ch---------hhhccCcEE
Q 026304 76 DSVVT----------HDGAKLPCWALPELT------SF--RQKL----------------GD---------DAYAKLDVI 112 (240)
Q Consensus 76 ~~~v~----------q~~~~~~~~~~~~~~------~~--~~~~----------------~~---------~l~~~p~ll 112 (240)
..|+- .+-.+..++++.... ++ ..++ .+ -+++.-++|
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEE
Confidence 00110 000000011111000 00 0000 01 146777999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
+|||.|. +.++++++++-.+++|.||+.+||..+-+ ..++.+++.++. ++..
T Consensus 170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGL----------e~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGL----------ETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccch----------hhcchhEEEecCCeeee
Confidence 9999977 45899999999988999999999999988 899999999998 7654
No 391
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=9.5e-16 Score=128.76 Aligned_cols=140 Identities=15% Similarity=0.133 Sum_probs=86.9
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchh----
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTS---- 96 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~---- 96 (240)
.++++++..+ ++++|+|||||||||+| |.+++..+.++.-...+... .+ .+++.+ +++.++..++..
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstll-r~i~~~~~l~~~g~~vp~~~-~~---i~~~~~---i~~~~~~~~~ls~g~s 91 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYL-RQVALIALLAQIGSFVPASK-AE---IGVVDR---IFTRIGASDDLAGGRS 91 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHH-HHHHHHHHHhccCCeecccc-ce---ecceee---EeccCCchhhhccCcc
Confidence 7889999887 99999999999999999 99987655443222222111 11 133322 333333333221
Q ss_pred -HHH---hhchh--hhccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc
Q 026304 97 -FRQ---KLGDD--AYAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD 163 (240)
Q Consensus 97 -~~~---~~~~~--l~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad 163 (240)
+.. .+... .+.+|+++||||| |+ .+ ....++..+.+..+.++|++||+.+.. .++|
T Consensus 92 ~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-----------~l~~ 160 (216)
T cd03284 92 TFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-----------ELEG 160 (216)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-----------HHhh
Confidence 111 11111 2469999999999 76 22 234455556552388999999997554 7888
Q ss_pred ceeeecc-eeeccCCcce
Q 026304 164 TVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 164 ~i~~l~~-~~~~~g~~~~ 180 (240)
++..+++ .+...+..+.
T Consensus 161 ~~~~v~~~~~~~~~~~~~ 178 (216)
T cd03284 161 KLPRVKNFHVAVKEKGGG 178 (216)
T ss_pred cCCCeEEEEEEEEeeCCe
Confidence 8776666 5555555444
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.63 E-value=8.9e-16 Score=151.72 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=54.8
Q ss_pred hhccC---cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304 105 AYAKL---DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T 169 (240)
Q Consensus 105 l~~~p---~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~ 169 (240)
++.+| ++++||||++ ...++++|+++.+ .|.|||++||+++.+ ..||+++.| +
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i-----------~~aD~ii~Lgp~~G~~ 912 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVI-----------KTADWIIDLGPEGGDG 912 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-----------HhCCEEEEecCCcCCC
Confidence 47788 9999999987 4578889999886 699999999999987 479999999 4
Q ss_pred c-eeeccCCccee
Q 026304 170 A-RCELCGKRAFF 181 (240)
Q Consensus 170 ~-~~~~~g~~~~~ 181 (240)
+ ++++.|+++.+
T Consensus 913 ~G~Iv~~Gt~~el 925 (943)
T PRK00349 913 GGEIVATGTPEEV 925 (943)
T ss_pred CCEEEEeCCHHHH
Confidence 6 88888887654
No 393
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=9.6e-16 Score=130.42 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=40.7
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|+++++|||++ ...+++.|+++.+ +.+||++||+.+ + ..+||++++|.-
T Consensus 180 ~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~----------~~~~d~i~~l~~ 235 (243)
T cd03272 180 PAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-L----------LEVADKFYGVKF 235 (243)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-H----------HhhCCEEEEEEE
Confidence 589999999988 3467888888754 788888888865 5 689999999864
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=1.7e-15 Score=156.04 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=54.5
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eee
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCE 173 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~ 173 (240)
.+|+++|||||++ ...++++|.++++ .|.|||++||+++++ .+||++++|. . +++
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-----------~~aDrVi~L~p~gg~~~G~iv 896 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-----------KVADYVLELGPEGGNLGGYLL 896 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-----------HhCCEEEEEccCCCCCCCEEE
Confidence 5999999999988 4578999999986 699999999999977 6899999995 4 788
Q ss_pred ccCCccee
Q 026304 174 LCGKRAFF 181 (240)
Q Consensus 174 ~~g~~~~~ 181 (240)
..|+++.+
T Consensus 897 ~~Gtpeel 904 (1809)
T PRK00635 897 ASCSPEEL 904 (1809)
T ss_pred EeCCHHHH
Confidence 88888654
No 395
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=4.8e-15 Score=146.27 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=52.0
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeec
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCEL 174 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~ 174 (240)
+|++++||||++ ...++++|+++.+ .|.|||+++|+++++ ..||+++.| ++ ++++
T Consensus 849 ~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i-----------~~aD~ii~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 849 GRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVI-----------KTADYIIDLGPEGGDGGGTIVA 916 (924)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-----------HhCCEEEEecCCccCCCCEEEE
Confidence 599999999988 4578899999886 699999999999987 469999999 56 8888
Q ss_pred cCCcce
Q 026304 175 CGKRAF 180 (240)
Q Consensus 175 ~g~~~~ 180 (240)
+|+++.
T Consensus 917 ~G~~~~ 922 (924)
T TIGR00630 917 SGTPEE 922 (924)
T ss_pred eCCHHH
Confidence 887654
No 396
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.61 E-value=2e-15 Score=125.14 Aligned_cols=135 Identities=14% Similarity=0.013 Sum_probs=79.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEe-ecc--chhcc----cCCCeEEEccCceecceecCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAM-IKS--SKDTR----YAIDSVVTHDGAKLPCWALPE 93 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~-~~~--~~~~~----~~~~~~v~q~~~~~~~~~~~~ 93 (240)
++++++++.+| +.+|+||||||||||+ ..|... ..|..... ... ....+ .....+.++....++. ....
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll-~ai~~~-l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-~~~~ 87 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAIL-TALTIG-LGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-PLCV 87 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHH-HHHHHH-hcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-cCCH
Confidence 57788888887 8899999999999999 887532 11211000 000 00000 0112344544332221 0000
Q ss_pred c--hhH---H--------------------Hhhchhh----hccCcEEEEcCccC------hHHHHHHHHHHHhc--CCC
Q 026304 94 L--TSF---R--------------------QKLGDDA----YAKLDVIGIDEAQF------FEDLYEFCCNAADH--DGK 136 (240)
Q Consensus 94 ~--~~~---~--------------------~~~~~~l----~~~p~lllLDEP~~------~~~i~~~l~~l~~~--~g~ 136 (240)
. ... . ..++..+ +.+|++++||||++ ...+.++|.++..+ .+.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~ 167 (198)
T cd03276 88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQ 167 (198)
T ss_pred HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcE
Confidence 0 000 0 0011123 47999999999987 34688888887653 246
Q ss_pred EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|+++||+++.+ ..+ |+|.+|+.
T Consensus 168 ~iii~th~~~~i----------~~~-d~v~~~~~ 190 (198)
T cd03276 168 FIFITPQDISGL----------ASS-DDVKVFRM 190 (198)
T ss_pred EEEEECCccccc----------ccc-cceeEEEe
Confidence 899999999999 665 99998874
No 397
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=6.2e-15 Score=127.50 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=87.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh-c
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL-G 102 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-~ 102 (240)
.-++|+||||||||||+ +.|+|+. ++|+++.......... ...++++|.. +...+++.++......+ .
T Consensus 112 ~~~~i~g~~g~GKttl~-~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL-RDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred eEEEEEcCCCCCHHHHH-HHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchHHHHHHH
Confidence 67899999999999999 9999973 4566765432111111 1224666654 34445555543222111 1
Q ss_pred hhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc--hHHHH--Hhhccceeeecc-eeeccCC
Q 026304 103 DDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG--SVLDI--IPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~--~~~~L--~~~ad~i~~l~~-~~~~~g~ 177 (240)
-...++|++|++|||...+.+..++..+ + .|.++|+++|+.+.. +... ....| ..++||+++|++ + ..|+
T Consensus 189 ~i~~~~P~villDE~~~~e~~~~l~~~~-~-~G~~vI~ttH~~~~~-~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~ 263 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGREEDVEALLEAL-H-AGVSIIATAHGRDVE-DLYKRPVFKELIENEAFERYVVLSRRK--GPGT 263 (270)
T ss_pred HHHhCCCCEEEEeCCCcHHHHHHHHHHH-h-CCCEEEEEechhHHH-HHHhChHHHHHHhcCceEEEEEEecCC--CCCc
Confidence 1234799999999998876666666665 3 599999999986653 1110 01111 356899999987 4 4455
Q ss_pred cc
Q 026304 178 RA 179 (240)
Q Consensus 178 ~~ 179 (240)
+.
T Consensus 264 ~~ 265 (270)
T TIGR02858 264 VE 265 (270)
T ss_pred ee
Confidence 43
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.1e-15 Score=134.30 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=91.8
Q ss_pred CCCCCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCC
Q 026304 4 SNLKPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 4 ~~~~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~ 75 (240)
+.+.+|.|-+.+|+|+| +..++|-|.-...++|+||||.|||||| +++.|-. -+|.- . ...|..
T Consensus 580 ~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlL-kLL~Gkl~P~~GE~-R-----KnhrL~- 651 (807)
T KOG0066|consen 580 TKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLL-KLLIGKLDPNDGEL-R-----KNHRLR- 651 (807)
T ss_pred CCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHH-HHHhcCCCCCcchh-h-----ccceee-
Confidence 44678899999999999 7899999999999999999999999999 9998841 11210 0 000110
Q ss_pred CeEEEccCc--eeccee------------------------------------cCcchhHHHhhchhhhccCcEEEEcCc
Q 026304 76 DSVVTHDGA--KLPCWA------------------------------------LPELTSFRQKLGDDAYAKLDVIGIDEA 117 (240)
Q Consensus 76 ~~~v~q~~~--~~~~~~------------------------------------~~~~~~~~~~~~~~l~~~p~lllLDEP 117 (240)
+|+.-|... +....+ +.+....+..+....+..|++||||||
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 122111100 000000 000000000011123689999999999
Q ss_pred cC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 118 QF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 118 ~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|+ .+ +-++.|.+...+....|||||||-.++ .+.--..+++.+
T Consensus 732 TNNLDIESIDALaEAIney~GgVi~VsHDeRLi----------~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEYNGGVIMVSHDERLI----------VETDCNLWVVEN 776 (807)
T ss_pred CCCcchhhHHHHHHHHHhccCcEEEEeccccee----------eecCceEEEEcc
Confidence 98 22 445555555555677899999998887 554445666655
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=132.13 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=123.3
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceE-Eeeccchhc
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNI-AMIKSSKDT 71 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i-~~~~~~~~~ 71 (240)
..+.|++++|+..- +++|||++.+||+++|.|-.|-|-+.|+ ..|+|+. ++|+++ ...++....
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~-eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV-EAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHH-HHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 35689999999875 8999999999999999999999999999 9999983 466665 333443333
Q ss_pred ccCCCeEEEccC---ceecceecCcchhHHHh------------------------------------------------
Q 026304 72 RYAIDSVVTHDG---AKLPCWALPELTSFRQK------------------------------------------------ 100 (240)
Q Consensus 72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~~~~------------------------------------------------ 100 (240)
+.+ .+|+|.+. .+...+++.+|.-+...
T Consensus 333 ~~G-~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK 411 (501)
T COG3845 333 RLG-LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411 (501)
T ss_pred hcC-CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence 333 36777543 23333444433222110
Q ss_pred --hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 101 --LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 101 --~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
++.++..+|++|++.+||. ...+.+.|.+.++ .|+.|+++|-|++++ +.+||||.+|.+ +
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLDEi----------l~lsDrIaVi~~Gr 480 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLDEI----------LELSDRIAVIYEGR 480 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHHHH----------HHhhheeeeeeCCc
Confidence 1234689999999999988 3468888889887 799999999999999 999999999999 8
Q ss_pred eeccCCcceee
Q 026304 172 CELCGKRAFFT 182 (240)
Q Consensus 172 ~~~~g~~~~~~ 182 (240)
+..+.++++.+
T Consensus 481 i~~~~~~~~~t 491 (501)
T COG3845 481 IVGIVPPEEAT 491 (501)
T ss_pred eecccccccCC
Confidence 88877776544
No 400
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.58 E-value=1.5e-14 Score=120.42 Aligned_cols=120 Identities=18% Similarity=0.084 Sum_probs=72.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeeccchhcccCCC-eEEEccC---ceeccee-cC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWA-LP 92 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~-~~ 92 (240)
.+|++|++.+|++++|+||||+||||++ ++++++.+. |..+ +....+.... .+...-. ......+ ..
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~G~~v----pa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYL-KQIALLAIMAQIGCFV----PAEYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHH-HHHHHHHHHHHcCCCc----chhhcCccChhheeEecCCccccchhhhHHH
Confidence 7899999999999999999999999999 999886432 2221 1111111110 1111100 0000000 00
Q ss_pred -cchhHHHhhchhhhccCcEEEEcCccC---h----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 93 -ELTSFRQKLGDDAYAKLDVIGIDEAQF---F----EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 93 -~~~~~~~~~~~~l~~~p~lllLDEP~~---~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+...+. ..-..+.+|+++++|||.. - .....++..+.+ .+.++|++||+.+++
T Consensus 94 ~e~~~~~--~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~ 154 (204)
T cd03282 94 SEMSETA--YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIA 154 (204)
T ss_pred HHHHHHH--HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 011111 1112467899999999944 1 124556777776 689999999999988
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.57 E-value=1.8e-14 Score=115.62 Aligned_cols=132 Identities=17% Similarity=0.073 Sum_probs=78.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-eEEeeccchhcccCCCeEEEccCc--eecceecCcchhH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-NIAMIKSSKDTRYAIDSVVTHDGA--KLPCWALPELTSF 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-~i~~~~~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~ 97 (240)
....++.+.++.++.|+|||||||||++ +.+........ .+.. ....+.+ ..++.... .+....+......
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l-~~i~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~i~~~~~lS~G~~~ 84 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTIL-DAIGLALGGAQSATRR---RSGVKAG--CIVAAVSAELIFTRLQLSGGEKE 84 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHH-HHHHHHHHhcchhhhc---cCcccCC--CcceeeEEEEehheeeccccHHH
Confidence 3445556666679999999999999999 98755322111 0000 0000000 11111110 1111112222222
Q ss_pred HHhhchhhhc----cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceee
Q 026304 98 RQKLGDDAYA----KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTK 167 (240)
Q Consensus 98 ~~~~~~~l~~----~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~ 167 (240)
...+...+.. +|+++++|||+. ...+.+.+.++..+ +.++|++||+.+.. ..+|+++.
T Consensus 85 ~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~-----------~~~d~~~~ 152 (162)
T cd03227 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA-----------ELADKLIH 152 (162)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH-----------HhhhhEEE
Confidence 2223333333 899999999966 34677788887764 88999999999987 56899999
Q ss_pred ecc
Q 026304 168 LTA 170 (240)
Q Consensus 168 l~~ 170 (240)
|..
T Consensus 153 l~~ 155 (162)
T cd03227 153 IKK 155 (162)
T ss_pred EEE
Confidence 875
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=4.6e-15 Score=126.96 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=43.2
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.|+++++|||++ ...+.+.|+++++ .|.+||++||+.++. .+||++++|..
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-----------~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-----------SKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-----------hhCCeEEEEEe
Confidence 489999999988 3468888888876 589999999997655 78999999875
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=6.1e-15 Score=126.38 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=40.4
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
.+|+++++|||++ ...+.+.|+++. .|.+||++||+.+. ...||+++-++
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~~-----------~~~~d~v~~~~ 242 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEGM-----------FNNANVLFRTR 242 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHH-----------HHhCCEEEEEE
Confidence 4789999999987 346788888874 48899999999554 47899998765
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=1.2e-14 Score=122.56 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=80.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccCceecceecCcchh
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDGAKLPCWALPELTS 96 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~~~~~~~~~~~~~~ 96 (240)
.+|++++..+|++++|.||||+||||++ +.++-..+ -|-. .+.. ....+.. .++.+-+ +.... ..+...
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~g~~---vpa~-~~~~~~~~~il~~~~-l~d~~-~~~lS~ 92 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYI-RQIGVIVLMAQIGCF---VPCD-SADIPIVDCILARVG-ASDSQ-LKGVST 92 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHH-HHHHHHHHHHHhCCC---cCcc-cEEEeccceeEeeec-cccch-hcCcCh
Confidence 7899999999999999999999999999 98763211 1210 0100 0000000 0111000 00000 011111
Q ss_pred HHH---hhchhh--hccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 97 FRQ---KLGDDA--YAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 97 ~~~---~~~~~l--~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
+.. .+...+ +.+|+++||||| |+ .+ .....++.+.++.+.++|++||+ ..+ .++||+
T Consensus 93 ~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el----------~~~~~~ 161 (222)
T cd03285 93 FMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HEL----------TALADE 161 (222)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHH----------HHHhhc
Confidence 111 111122 579999999999 66 22 23333455554357899999996 556 689999
Q ss_pred eeeecc-eeeccCC
Q 026304 165 VTKLTA-RCELCGK 177 (240)
Q Consensus 165 i~~l~~-~~~~~g~ 177 (240)
+..+++ ++..++.
T Consensus 162 ~~~i~~g~~~~~~~ 175 (222)
T cd03285 162 VPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEEEEEEe
Confidence 998888 6665543
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.56 E-value=5.4e-14 Score=114.71 Aligned_cols=136 Identities=13% Similarity=0.063 Sum_probs=77.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccc------hhcccC----CCeEEEccC-ceecce
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSS------KDTRYA----IDSVVTHDG-AKLPCW 89 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~------~~~~~~----~~~~v~q~~-~~~~~~ 89 (240)
.++..+...++.+.+|+||||||||++| ..|.-. ..|+........ ...+.+ ...+.+... .+++.-
T Consensus 12 ~~~~~~~~~~~~~~~i~G~NGsGKSnil-~Ai~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 89 (178)
T cd03239 12 YRDETVVGGSNSFNAIVGPNGSGKSNIV-DAICFV-LGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQG 89 (178)
T ss_pred CCCCEEecCCCceEEEECCCCCCHHHHH-HHHHHH-cCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCC
Confidence 3555555544449999999999999999 776421 111111000000 000000 012222211 122221
Q ss_pred ecCcch----hHHHhhchhh----hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH
Q 026304 90 ALPELT----SFRQKLGDDA----YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV 155 (240)
Q Consensus 90 ~~~~~~----~~~~~~~~~l----~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~ 155 (240)
...+.. .....+...+ +.+|+++++|||++ ...+.+.+.++.+ .|.++|++||+++.+
T Consensus 90 ~~~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~------- 161 (178)
T cd03239 90 KVEQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMF------- 161 (178)
T ss_pred cCcccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH-------
Confidence 111211 1111122223 26899999999987 3467888888876 589999999998876
Q ss_pred HHHHhhccceeeecc
Q 026304 156 LDIIPLADTVTKLTA 170 (240)
Q Consensus 156 ~~L~~~ad~i~~l~~ 170 (240)
..||+++.+..
T Consensus 162 ----~~adrvi~i~~ 172 (178)
T cd03239 162 ----ENADKLIGVLF 172 (178)
T ss_pred ----hhCCeEEEEEE
Confidence 57999998865
No 406
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.56 E-value=9.9e-15 Score=136.84 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=93.8
Q ss_pred CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEc
Q 026304 8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
..+|+++|++..- +++.+|++++|+.+.|.||||||||||+ |+|+|+..-|.-.-.+|... ..-|+||
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLl-RaiaGLWP~g~G~I~~P~~~-----~~lflpQ 463 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLL-RALAGLWPWGSGRISMPADS-----ALLFLPQ 463 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHH-HHHhccCccCCCceecCCCC-----ceEEecC
Confidence 4689999999875 8999999999999999999999999999 99999843332111222110 0134555
Q ss_pred cCceecceecCc------------------------chhHHHh--------------------hchhhhccCcEEEEcCc
Q 026304 82 DGAKLPCWALPE------------------------LTSFRQK--------------------LGDDAYAKLDVIGIDEA 117 (240)
Q Consensus 82 ~~~~~~~~~~~~------------------------~~~~~~~--------------------~~~~l~~~p~lllLDEP 117 (240)
.+.+... ++.+ .-++..+ +++.++++|++++|||.
T Consensus 464 ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 464 RPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 4432211 1110 0011111 12336899999999999
Q ss_pred cC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 118 QF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 118 ~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|+ . ..+++++++-. .+.|||.|+|..... .+.++.+.+.+
T Consensus 543 TsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~-----------~~h~~~l~l~~ 588 (604)
T COG4178 543 TSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLW-----------NFHSRQLELLD 588 (604)
T ss_pred hhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhH-----------HHHhhheeecc
Confidence 88 2 24555554433 589999999998765 66666665544
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-13 Score=125.75 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=97.8
Q ss_pred CCCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-h-hCCceEEeeccchhcccCCC
Q 026304 6 LKPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-S-DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~-~~g~~i~~~~~~~~~~~~~~ 76 (240)
.++|.+++.+|++.| +.+++++++.-+.++++|+||+||||++ +++.+- . ..| +....+ |.+ .
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~l-Ki~~~~l~~~rg--i~~~~~----r~r-i 429 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL-KILKGDLTPTRG--IVGRHP----RLR-I 429 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHH-HHHhccCCcccc--eeeecc----cce-e
Confidence 456789999999998 7799999999999999999999999999 999873 2 112 111111 111 2
Q ss_pred eEEEccCce---------------ecceecCcchhHH------------------------HhhchhhhccCcEEEEcCc
Q 026304 77 SVVTHDGAK---------------LPCWALPELTSFR------------------------QKLGDDAYAKLDVIGIDEA 117 (240)
Q Consensus 77 ~~v~q~~~~---------------~~~~~~~~~~~~~------------------------~~~~~~l~~~p~lllLDEP 117 (240)
+|.+|...- ++..+-++..... ..++...+.+|.+|+||||
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 333432211 1111111111100 1112224789999999999
Q ss_pred cC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 118 QF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 118 ~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
|+ .+ +-++.|.+..+..+-.|||||||.+++ ...|+.+++.++ ++.
T Consensus 510 TNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi----------~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 510 TNHLDRDSLGALAKALKNFNGGVVLVSHDEEFI----------SSLCKELWVVEDGKVT 558 (582)
T ss_pred CccccHHHHHHHHHHHHhcCCcEEEEECcHHHH----------hhcCceeEEEcCCcEE
Confidence 99 22 334444333333677899999999999 999999999987 543
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=123.84 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=92.6
Q ss_pred eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC----ceEEeeccchhcccCCCeEE
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG----RNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g----~~i~~~~~~~~~~~~~~~~v 79 (240)
+++..++++.| |+-=.-+|..||+++++||||-||||+. ++|+|.. ..| ..+...++.....+. +-|
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFv-k~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~--gtV 418 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFV-KLLAGVIKPDEGSEEDLKVSYKPQYISPDYD--GTV 418 (591)
T ss_pred eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHH-HHHhccccCCCCCCccceEeecceeecCCCC--CcH
Confidence 45556666665 4444556778899999999999999999 9999962 223 233333322211110 111
Q ss_pred Ec-----------cCce----ecceecCcch-----------hHHHhhchhhhccCcEEEEcCccC------hHHHHHHH
Q 026304 80 TH-----------DGAK----LPCWALPELT-----------SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFC 127 (240)
Q Consensus 80 ~q-----------~~~~----~~~~~~~~~~-----------~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l 127 (240)
.+ ..+. ...+.+.... ..+..++..+..++|+.+||||.+ +..+.+.|
T Consensus 419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 10 0000 0001111000 000111223688999999999977 22567888
Q ss_pred HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 128 CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 128 ~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++.....++|.+++.||+-++ .-++||++++..
T Consensus 499 RR~~e~~~kta~vVdHDi~~~----------dyvsDr~ivF~G 531 (591)
T COG1245 499 RRFIENNEKTALVVDHDIYMI----------DYVSDRLIVFEG 531 (591)
T ss_pred HHHHhhcCceEEEEecceehh----------hhhhceEEEEec
Confidence 998887889999999999998 888999999876
No 409
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=1.6e-12 Score=108.90 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=42.3
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCC-CEEEEEecChhhhhcccchHHHHHhhccce--eeec
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDG-KTVVVAGLDGDYLRRSFGSVLDIIPLADTV--TKLT 169 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g-~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i--~~l~ 169 (240)
+.+|+++++|||++ ...+++.+.++.++.| .++|++||++... .++||++ ++|.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~----------~~~~~~~~v~~l~ 208 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG----------LNYHEKMTVLCVY 208 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC----------CcccCceEEEEEe
Confidence 47999999999987 3478888888876324 5899999999888 7888754 4444
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.8e-14 Score=126.18 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=92.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h-CCceEEeeccc--------hh---
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D-NGRNIAMIKSS--------KD--- 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~-~g~~i~~~~~~--------~~--- 70 (240)
-|.++|.+.+. +.+-||.|..|..++++||||-|||||| +.|+.-. + ...++..-.+. ..
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLL-kHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLL-KHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHH-HHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 47888888775 7899999999999999999999999999 8886521 0 11111110000 00
Q ss_pred ----ccc---------------------------------------------CCCeEEEc-cCceecceecCcchhHHHh
Q 026304 71 ----TRY---------------------------------------------AIDSVVTH-DGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 71 ----~~~---------------------------------------------~~~~~v~q-~~~~~~~~~~~~~~~~~~~ 100 (240)
.|. -..|+-|. .-.-.|...+.+.+.++..
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 000 00000000 0000111112222233333
Q ss_pred hchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304 101 LGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL 174 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~ 174 (240)
++..+...|-+|.|||||+ .+ .-+=+|..+.+-..+|+++||||-.|+ ...|..|+.|++ ++.+
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL----------D~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL----------DSVCTDIIHLDNQKLHY 489 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH----------HHHHHHHhhhhhhhhhh
Confidence 3455789999999999998 22 111123333333456999999999999 999999999998 7654
No 411
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=6.4e-13 Score=111.97 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=71.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEcc---CceecceecC-
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHD---GAKLPCWALP- 92 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~---~~~~~~~~~~- 92 (240)
.++++|.+.+|++++|+||||+||||++ +++++..+ .|.-+... ..+.... .+..+- ..+....+-.
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll-~~i~~~~~la~~G~~v~a~----~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYI-RQVALITIMAQIGSFVPAS----SATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHH-HHHHHHHHHHhCCCEEEcC----ceEEeccceEEEEecCccccccccchHH
Confidence 7899999999999999999999999999 99998532 33322211 0111100 111110 0111111100
Q ss_pred -cchhHHHhhchhhhccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 93 -ELTSFRQKLGDDAYAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 93 -~~~~~~~~~~~~l~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+..++...+ ..+.++.++|+||| |+ .+ ....+++.+.+..+.++|++||+.+..
T Consensus 96 ~e~~~~~~il--~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 96 VELSETSHIL--SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHHHHHHHH--HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 111111111 12568999999999 43 22 235567777763488999999999876
No 412
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=119.18 Aligned_cols=147 Identities=18% Similarity=0.119 Sum_probs=96.2
Q ss_pred CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeE
Q 026304 8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~ 78 (240)
+.+|++++|+..- ++++||+|++|+-+.|+||||||||+|+ |.+.|+.. .|+-........ ...-|
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLl-RvlggLWp~~~G~l~k~~~~~~----~~lff 505 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLL-RVLGGLWPSTGGKLTKPTDGGP----KDLFF 505 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHH-HHHhcccccCCCeEEecccCCC----CceEE
Confidence 3589999999874 7899999999999999999999999999 99999832 232211111100 11134
Q ss_pred EEccCc----------eecceecC---------cchhHH---------Hh-------------------------hchhh
Q 026304 79 VTHDGA----------KLPCWALP---------ELTSFR---------QK-------------------------LGDDA 105 (240)
Q Consensus 79 v~q~~~----------~~~~~~~~---------~~~~~~---------~~-------------------------~~~~l 105 (240)
+||.+. ++|..... +...+. .+ +++.+
T Consensus 506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 454332 22211110 001111 11 12225
Q ss_pred hccCcEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 106 YAKLDVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 106 ~~~p~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++|++-+|||.|+. .++-..+-+..++.|+|.|-|+|..... .+=|.++.|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-----------kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-----------KFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-----------hhhhEEEEecC
Confidence 899999999999993 3566666666666899999999998765 66677776653
No 413
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1.5e-12 Score=109.16 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCcccCc--EEEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceec-ceecCcch-hH
Q 026304 25 LPHRNSG--EIHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP-CWALPELT-SF 97 (240)
Q Consensus 25 sl~i~~G--e~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~-~~~~~~~~-~~ 97 (240)
++.+.++ .+++|+||||+|||||| |.+.... ..|.-+.. ...+ .++..|....+. ..++.+.. .+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlL-k~i~~~~~la~~G~~v~a----~~~~---~~~~d~i~~~l~~~~si~~~~S~f 92 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYL-KQVALIVFLAHIGSFVPA----DSAT---IGLVDKIFTRMSSRESVSSGQSAF 92 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHH-HHHHHHHHHHhCCCeeEc----CCcE---EeeeeeeeeeeCCccChhhccchH
Confidence 3444444 89999999999999999 9887432 12322211 0111 123222211111 11111111 11
Q ss_pred HHh-----hchhhhccCcEEEEcCccC----h---HHHHHHHHHHHhc--CCCEEEEEecChhhh
Q 026304 98 RQK-----LGDDAYAKLDVIGIDEAQF----F---EDLYEFCCNAADH--DGKTVVVAGLDGDYL 148 (240)
Q Consensus 98 ~~~-----~~~~l~~~p~lllLDEP~~----~---~~i~~~l~~l~~~--~g~tvi~vtHd~~~~ 148 (240)
... .....+.+|.++++|||+. . ..+..+++++.+. .+.++|++||+.+.+
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 111 1123467999999999966 1 1234577777652 135899999999988
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.35 E-value=2.5e-12 Score=105.42 Aligned_cols=43 Identities=9% Similarity=-0.065 Sum_probs=30.8
Q ss_pred hccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChhhh
Q 026304 106 YAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+.+|+++|+|||+. ...+ ..+++.+.++.+.++|++||+.+..
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 34999999999966 2233 3455666552388999999999644
No 415
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.32 E-value=3e-12 Score=114.58 Aligned_cols=137 Identities=21% Similarity=0.160 Sum_probs=82.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-Cc--------eEEeeccchhcccCCCeEEEccC--ceecc-
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GR--------NIAMIKSSKDTRYAIDSVVTHDG--AKLPC- 88 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~--------~i~~~~~~~~~~~~~~~~v~q~~--~~~~~- 88 (240)
++|+||++++|++++|+|+|||||||+| ++|.|.... +. .+. .+........-..+-|+.+ .+...
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttll-Rmi~G~~~~~~ee~y~p~sg~v~-vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVE-VPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHH-HHHHHHhhcccccccCCCCCcee-ccccchhhccCcccccccCchhHHHHH
Confidence 7899999999999999999999999999 999996321 11 010 0000000000000111100 00000
Q ss_pred --ee--------------cCcc-------------hhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304 89 --WA--------------LPEL-------------TSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH 133 (240)
Q Consensus 89 --~~--------------~~~~-------------~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~ 133 (240)
.+ +.+. .....+++..+...|.+++.||-.+ ...+..-+.+++.+
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 00 0000 0111112333678999999999866 23567777888877
Q ss_pred CCCEEEEEecChhhhhcccchHHHHHhh-ccceeeec
Q 026304 134 DGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLT 169 (240)
Q Consensus 134 ~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~ 169 (240)
.|.|++++||..++. .++ -|+++.+.
T Consensus 557 ~giTlivvThrpEv~----------~AL~PD~li~vg 583 (593)
T COG2401 557 AGITLIVVTHRPEVG----------NALRPDTLILVG 583 (593)
T ss_pred hCCeEEEEecCHHHH----------hccCCceeEEee
Confidence 899999999999998 667 56666543
No 416
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=1.9e-11 Score=102.78 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=69.8
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeeccchhcccCCC-eEEEcc---Cceecceec--
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIKSSKDTRYAID-SVVTHD---GAKLPCWAL-- 91 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~~~~~~~~~~~-~~v~q~---~~~~~~~~~-- 91 (240)
-+|++|+..+|++++|+||||+||||++ +.+++..+. |-.+ +.. ..+.... .+..+- ..+....+-
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l-~~i~~~~~la~~G~~v---pa~-~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLL-RTVCLAVIMAQMGMDV---PAK-SMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHH-HHHHHHHHHHHcCCcc---Ccc-ccEeccccEEEEecCcccccccCcchHH
Confidence 6899999999999999999999999999 999876332 2211 111 1111110 111110 000111000
Q ss_pred CcchhHHHhhchhhhccCcEEEEcCccC----h--HHHHHH-HHHHHhcCCCEEEEEecChhhh
Q 026304 92 PELTSFRQKLGDDAYAKLDVIGIDEAQF----F--EDLYEF-CCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~----~--~~i~~~-l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.+..++...+ ..+.+|.++|+|||.. . ..+... ++.+.+..+.+++++||+.+.+
T Consensus 95 ~e~~~~~~il--~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~ 156 (218)
T cd03286 95 VELSETANIL--RHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLC 156 (218)
T ss_pred HHHHHHHHHH--HhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0111111111 1257899999999943 1 233333 5566552389999999999988
No 417
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.2e-11 Score=118.27 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=52.4
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eee
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCE 173 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~ 173 (240)
...-+++|||||. ...+++.|.++.+ .|-|||++.|+++.+ ..||+|+-|- . .++
T Consensus 842 tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVI-----------k~AD~IIDLGPeGG~~GG~iv 909 (935)
T COG0178 842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVI-----------KTADWIIDLGPEGGDGGGEIV 909 (935)
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceE-----------eecCEEEEcCCCCCCCCceEE
Confidence 3447999999988 3478888899998 799999999999987 8899999883 2 677
Q ss_pred ccCCcceee
Q 026304 174 LCGKRAFFT 182 (240)
Q Consensus 174 ~~g~~~~~~ 182 (240)
+.|+|+++.
T Consensus 910 a~GTPeeva 918 (935)
T COG0178 910 ASGTPEEVA 918 (935)
T ss_pred EecCHHHHH
Confidence 777776543
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.29 E-value=3.8e-12 Score=124.37 Aligned_cols=131 Identities=11% Similarity=0.051 Sum_probs=76.8
Q ss_pred eEEEcceeEeeecC-----CCCcccCc-EEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEE
Q 026304 10 AVTTNQVNSGRDRV-----GLPHRNSG-EIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 10 ~l~~~~ls~~~l~~-----vsl~i~~G-e~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
.+.++++.+-++++ +|+.+..+ ++++|+||||+|||||| ++++|..+ .|..+. ....... ++..
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlL-K~i~~~~l~aq~G~~Vp---a~~~~~~---~~~d 367 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTL-KTLGLLALMFQSGIPIP---ANEHSEI---PYFE 367 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHH-HHHHHHHHHHHhCCCcc---CCccccc---cchh
Confidence 47777777666543 78888877 89999999999999999 99988632 232211 1110111 1111
Q ss_pred ccCceec-ceecCcch-hHHHh---hchh--hhccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChh
Q 026304 81 HDGAKLP-CWALPELT-SFRQK---LGDD--AYAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 81 q~~~~~~-~~~~~~~~-~~~~~---~~~~--l~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
|....+. ..++.+.. .|... +... .+.+|.++|+|||.. ...+ ..++..+.+ .|.++|++||+.+
T Consensus 368 ~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 368 EIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred heeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 1110000 01111111 11100 1111 135899999999966 2234 456677766 6899999999988
Q ss_pred hh
Q 026304 147 YL 148 (240)
Q Consensus 147 ~~ 148 (240)
+.
T Consensus 447 L~ 448 (771)
T TIGR01069 447 LK 448 (771)
T ss_pred HH
Confidence 65
No 419
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=2.4e-11 Score=105.66 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=42.3
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|+++++|||++ ...+.+.+.++.+ +.++|++||+++. ..+||+++.|.+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-----------~~~~d~~~~l~~ 247 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-----------AAMADNHFLVEK 247 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-----------HHhcCcEEEEEE
Confidence 999999999977 3467888888754 6899999999984 479999999876
No 420
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.25 E-value=9.5e-12 Score=114.06 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=83.9
Q ss_pred EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304 11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
|.++|+-+-- +..++|+|++|-.+.|+||||||||+|+ |+|.|+. .+|. ...|+.. ..-|+||.
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLf-RILggLWPvy~g~--L~~P~~~-----~mFYIPQR 553 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLF-RILGGLWPVYNGL--LSIPRPN-----NIFYIPQR 553 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHH-HHHhccCcccCCe--eecCCCc-----ceEeccCC
Confidence 4555554432 6789999999999999999999999999 9999983 2332 2222211 12345554
Q ss_pred Cc----------eecceecC----------cchhHH---------Hh-----------------------hchhhhccCc
Q 026304 83 GA----------KLPCWALP----------ELTSFR---------QK-----------------------LGDDAYAKLD 110 (240)
Q Consensus 83 ~~----------~~~~~~~~----------~~~~~~---------~~-----------------------~~~~l~~~p~ 110 (240)
+. .+|+. .. +...+. .+ ++....++|+
T Consensus 554 PYms~gtlRDQIIYPdS-~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk 632 (728)
T KOG0064|consen 554 PYMSGGTLRDQIIYPDS-SEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK 632 (728)
T ss_pred CccCcCcccceeecCCc-HHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence 32 22211 11 000000 00 0122589999
Q ss_pred EEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 111 VIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 111 lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+-+|||.|+. -++-..+-+.++..|.+.+-+||.+...
T Consensus 633 yalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslw 672 (728)
T KOG0064|consen 633 YALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLW 672 (728)
T ss_pred hhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHH
Confidence 9999999993 3566677777777899999999999865
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=111.87 Aligned_cols=55 Identities=29% Similarity=0.175 Sum_probs=46.8
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++.+++++|||++ +-.....++++++ .+++|++|.||+..+ ..++|-|.++..
T Consensus 228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~-~~k~ViVVEHDLavL----------D~lsD~vhI~YG 288 (591)
T COG1245 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-DGKYVIVVEHDLAVL----------DYLSDFVHILYG 288 (591)
T ss_pred HhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc-cCCeEEEEechHHHH----------HHhhheeEEEec
Confidence 589999999999998 2256778889987 589999999999888 788998888764
No 422
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.24 E-value=7.5e-11 Score=122.34 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=52.2
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eeecc
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCELC 175 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~~~ 175 (240)
+.+++|||||. ...+++.|.++.+ .|-|||++.||++.+ ..||+|+-|- . +++++
T Consensus 1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~~i-----------~~aD~iidlgp~gG~~GG~iva~ 1788 (1809)
T PRK00635 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPALL-----------KQADYLIEMGPGSGKTGGKILFS 1788 (1809)
T ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHH-----------HhCCEEEEcCCCcccCCCEEEEE
Confidence 68999999988 3478888999997 799999999999998 5599999984 2 78888
Q ss_pred CCcceee
Q 026304 176 GKRAFFT 182 (240)
Q Consensus 176 g~~~~~~ 182 (240)
|+|+++.
T Consensus 1789 Gtp~~i~ 1795 (1809)
T PRK00635 1789 GPPKDIS 1795 (1809)
T ss_pred eCHHHHh
Confidence 8887653
No 423
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.20 E-value=5.1e-11 Score=105.24 Aligned_cols=137 Identities=14% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhccc---CCCeEEEccCceecceecCcchhHHHh
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRY---AIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~---~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
+++.+..|+.++|+||+|||||||+ +.+.++......+..+........ ....+..+... . ......+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~---~~~~~~~~~~ 210 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGG--Q---GLAKVTPKDL 210 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCC--C---CcCccCHHHH
Confidence 3466789999999999999999999 999987443333322221110000 01112211100 0 0111222223
Q ss_pred hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 101 LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
+...+-++|++|++|||... +.+++++.+.. .+.+++.++|..+.. ...+|+..|.. .....|.+.
T Consensus 211 l~~~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~-g~~~~i~T~Ha~~~~-----------~~~~Rl~~l~~~~~~~~g~~~ 277 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRGD-EAFDFIRAVNT-GHPGSITTLHAGSPE-----------EAFEQLALMVKSSQAGLGLDF 277 (308)
T ss_pred HHHHhcCCCCeEEEeccCCH-HHHHHHHHHhc-CCCeEEEEEeCCCHH-----------HHHHHHHHHhhccccccCCCH
Confidence 33345689999999999874 56777777653 334679999998844 55788877765 454445443
No 424
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=8e-11 Score=117.61 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=112.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----------hhCCceEEeeccchhcccCCCeEEEccCceecce
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----------SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----------~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~ 89 (240)
++|+|.-+++|+.+.++||.|||||||| +.++|- .++|.+...+.+ .+...|.+|.+.-++.+
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttll-kal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLL-KALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHH-HHHhCCCcccccCCCceeECCCccccccc-----CceEEecccccccccee
Confidence 8999999999999999999999999999 999994 223333322222 22347888988889999
Q ss_pred ecCcchhHHHhh----------------------------------------------ch---------hhhccCcEEEE
Q 026304 90 ALPELTSFRQKL----------------------------------------------GD---------DAYAKLDVIGI 114 (240)
Q Consensus 90 ~~~~~~~~~~~~----------------------------------------------~~---------~l~~~p~lllL 114 (240)
|+.+.+++..+. +| .++.++.++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 998777665432 00 13789999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
||++. .-++.+.|+++++..+.|++++-|... .+ ..+.|+|++|.+ +++++|+.+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~----------~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEI----------YDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHH----------HHhhhheeeeeccceEEeccHHH
Confidence 99977 237888889988777889998888764 34 789999999999 9999998653
No 425
>PRK13695 putative NTPase; Provisional
Probab=99.18 E-value=1.3e-10 Score=94.11 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=44.6
Q ss_pred hhccCcEEEEcCccCh----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 105 AYAKLDVIGIDEAQFF----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 105 l~~~p~lllLDEP~~~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
.+.+|++|++|||... ..+.+.+.++.+ .+.++|+++|+. .+ ..++|+|..+.+ ++.
T Consensus 93 ~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i~v~h~~-~~----------~~~~~~i~~~~~~~i~ 154 (174)
T PRK13695 93 ALEEADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVIATLHRR-SV----------HPFVQEIKSRPGGRVY 154 (174)
T ss_pred ccCCCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEEEEECch-hh----------HHHHHHHhccCCcEEE
Confidence 4568999999996432 356788888875 799999999994 55 578999999888 554
No 426
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.11 E-value=2e-10 Score=97.34 Aligned_cols=143 Identities=19% Similarity=0.162 Sum_probs=78.2
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEcc----Cce-----ecce
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTHD----GAK-----LPCW 89 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q~----~~~-----~~~~ 89 (240)
+...+++|+++.|+||||||||||.++++.+..-.|..+..+..... ......++-.+. +.+ ++..
T Consensus 17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 96 (230)
T PRK08533 17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLL 96 (230)
T ss_pred hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccc
Confidence 34458999999999999999999954888876556665554432210 000000110000 000 0100
Q ss_pred ec-CcchhHHHhh-chhhhccCcEEEEcCccC-h---------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304 90 AL-PELTSFRQKL-GDDAYAKLDVIGIDEAQF-F---------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD 157 (240)
Q Consensus 90 ~~-~~~~~~~~~~-~~~l~~~p~lllLDEP~~-~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~ 157 (240)
.. .+...+...+ ......+|+++++|||++ . .++.++++.+++ .|.|+++ ||+.......+. ..
T Consensus 97 ~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~--~~ 172 (230)
T PRK08533 97 SGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVL--TI 172 (230)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eecccccccccc--ee
Confidence 00 0001111111 111235799999999976 2 357777777766 5776554 666554322221 23
Q ss_pred HHhhccceeeecc
Q 026304 158 IIPLADTVTKLTA 170 (240)
Q Consensus 158 L~~~ad~i~~l~~ 170 (240)
+..+||-|+.|+.
T Consensus 173 ~~~~~DgvI~L~~ 185 (230)
T PRK08533 173 LRTAATMLIRLEV 185 (230)
T ss_pred EEEeeeEEEEEEE
Confidence 4677888888875
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.11 E-value=1e-10 Score=114.70 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=92.3
Q ss_pred CCCCccc-CcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccCceecceecCcch-h
Q 026304 23 VGLPHRN-SGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDGAKLPCWALPELT-S 96 (240)
Q Consensus 23 ~vsl~i~-~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~~~~~~~~~~~~~-~ 96 (240)
..++.+. .+.++.|+|||++||||+| |.+....+ .|-.+.. ....+.+.. .+....+. ..++.... .
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~l-ktigl~~~maq~G~~vpa---~~~~~i~~~~~i~~~ig~---~~si~~~lSt 390 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTL-KTLGLAALMAKSGLPIPA---NEPSEIPVFKEIFADIGD---EQSIEQSLST 390 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHH-HHHHHHHHHHHhCCCccc---CCCccccccceEEEecCC---ccchhhchhH
Confidence 4455554 4568999999999999999 98865422 2322211 100111110 11111000 00111111 1
Q ss_pred HHHh---hchh--hhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 97 FRQK---LGDD--AYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 97 ~~~~---~~~~--l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
|... .... .+.+|.++|+|||.. ...+. .++..+.+ .|.++|++||+.+.. ...+++
T Consensus 391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~----------~~~~~~ 459 (782)
T PRK00409 391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELK----------ALMYNR 459 (782)
T ss_pred HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHH----------HHHhcC
Confidence 1110 0111 136899999999966 22343 45666665 689999999999888 666676
Q ss_pred eeeecceeeccCCcceeeeeecCCCcEEEeCCcceEEeecchhhccCcccccccccccccc
Q 026304 165 VTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFH 225 (240)
Q Consensus 165 i~~l~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~y~~~c~~~~~~~~~~~~~~~~~~~~~ 225 (240)
..+....+.++...-.++.++..|. ....|.-.+.+.+.........|+.++...
T Consensus 460 ~~v~~~~~~~d~~~l~~~Ykl~~G~------~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~ 514 (782)
T PRK00409 460 EGVENASVEFDEETLRPTYRLLIGI------PGKSNAFEIAKRLGLPENIIEEAKKLIGED 514 (782)
T ss_pred CCeEEEEEEEecCcCcEEEEEeeCC------CCCcHHHHHHHHhCcCHHHHHHHHHHHhhh
Confidence 6655444443322112233332221 123344444555555566666666666443
No 428
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.10 E-value=7e-10 Score=91.91 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=62.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchhC--CceEEeec-cchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESDN--GRNIAMIK-SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL 109 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~~--g~~i~~~~-~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p 109 (240)
++.|.||+||||||++ +.+.+.... +..+.... +..........++.|... -.+...+...+...+..+|
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREV------GLDTLSFENALKAALRQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccccccCccceeeeccc------CCCccCHHHHHHHHhcCCc
Confidence 7899999999999999 877765321 22333221 111111111123333211 0011223333444456799
Q ss_pred cEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 110 DVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 110 ~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+++++|||...+.+...+ +.+. .|..++.++|..+..
T Consensus 76 d~ii~gEird~e~~~~~l-~~a~-~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 76 DVILVGEMRDLETIRLAL-TAAE-TGHLVMSTLHTNSAA 112 (198)
T ss_pred CEEEEcCCCCHHHHHHHH-HHHH-cCCEEEEEecCCcHH
Confidence 999999997654444434 5555 689999999998765
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.09 E-value=3.7e-10 Score=91.62 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=35.0
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.+.--+.+||||.+ +.+++..|+++++ .|.-+||+||.+-.+
T Consensus 144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPiLl 191 (233)
T COG3910 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPILL 191 (233)
T ss_pred hccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChhhe
Confidence 56778999999966 3468888889987 799999999998655
No 430
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.07 E-value=3.5e-11 Score=89.77 Aligned_cols=59 Identities=14% Similarity=-0.053 Sum_probs=41.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC--chhCCceEEeeccchhcccCCCeEEEcc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS--ESDNGRNIAMIKSSKDTRYAIDSVVTHD 82 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g--l~~~g~~i~~~~~~~~~~~~~~~~v~q~ 82 (240)
|++++|++++|++++|+||||||||||+ +++.. ..+.|.++..++.....+ ..++++|+
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl-~~l~~G~i~~~g~di~~~~~~~~~~--~~~~~~q~ 65 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELA-LELIKRKHRLVGDDNVEIREDSKDE--LIGRNPEL 65 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHH-HHhhCCeEEEeeEeHHHhhhhhcCC--EEEEechh
Confidence 7899999999999999999999999999 88763 234455544433222222 23566665
No 431
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.01 E-value=2.8e-09 Score=86.57 Aligned_cols=137 Identities=16% Similarity=0.056 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEc----cCc-ee----c-ceecCcch--
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTH----DGA-KL----P-CWALPELT-- 95 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q----~~~-~~----~-~~~~~~~~-- 95 (240)
++.|.||.|+|||||.++++....-.|..+..+..... .+....++-.. .+. .+ + .+...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 36899999999999986665554456666655542210 01000011000 000 00 0 00000000
Q ss_pred -hHHHhhc-hhhhccCcEEEEcCccCh---------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 96 -SFRQKLG-DDAYAKLDVIGIDEAQFF---------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 96 -~~~~~~~-~~l~~~p~lllLDEP~~~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
.+...+. .....+|+++++|||+.. ..+.++++.+++ .|.|+|+++|+...... ......+..+||.
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~-~~~~~~~~~~aD~ 158 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGT-GFGGGDVEYLVDG 158 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCc-ccCcCceeEeeeE
Confidence 1111111 113468999999999762 245667777776 69999999998875211 1112234788999
Q ss_pred eeeecce
Q 026304 165 VTKLTAR 171 (240)
Q Consensus 165 i~~l~~~ 171 (240)
++.|+..
T Consensus 159 ii~l~~~ 165 (187)
T cd01124 159 VIRLRLD 165 (187)
T ss_pred EEEEEEE
Confidence 9998753
No 432
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=2.4e-09 Score=84.21 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=67.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcc-----c-CCC-eEEEccCceecceecCcchhHHH--hhc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTR-----Y-AID-SVVTHDGAKLPCWALPELTSFRQ--KLG 102 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~-----~-~~~-~~v~q~~~~~~~~~~~~~~~~~~--~~~ 102 (240)
+++|.||+|+||||++ +.+++. ...|..+..+....... . ... ....+....+...+......... ...
T Consensus 1 ~~~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLA-LQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHH-HHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 4789999999999999 777664 33455555443221100 0 000 00000111111111111111100 011
Q ss_pred hhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccc---hHHHHHhhccc
Q 026304 103 DDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG---SVLDIIPLADT 164 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~---~~~~L~~~ad~ 164 (240)
.....+|+++++|||+.. .+.+..+.+..++.+.++++++|........++ ....+..+||-
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADT 159 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeeecce
Confidence 223568999999999742 122323333333369999999998865533221 11334555666
Q ss_pred eeeec
Q 026304 165 VTKLT 169 (240)
Q Consensus 165 i~~l~ 169 (240)
++.++
T Consensus 160 ~~~l~ 164 (165)
T cd01120 160 VIVLS 164 (165)
T ss_pred EEEEe
Confidence 66553
No 433
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.98 E-value=2.4e-09 Score=90.76 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc-----ccCCCeEEEccC----c--eec----ce
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT-----RYAIDSVVTHDG----A--KLP----CW 89 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~-----~~~~~~~v~q~~----~--~~~----~~ 89 (240)
.--+++|.++.|.|++|||||||...++.+..-.|..+..+...... +....++-..+. . .++ ..
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence 44689999999999999999999955545443456666555422110 000001100000 0 000 00
Q ss_pred ec--CcchhHHHhhchhh-hccCcEEEEcCccC------hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304 90 AL--PELTSFRQKLGDDA-YAKLDVIGIDEAQF------FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD 157 (240)
Q Consensus 90 ~~--~~~~~~~~~~~~~l-~~~p~lllLDEP~~------~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~ 157 (240)
.. .....+...+.... -.+|+++++|||++ .. .++..++.+++ .+.|+++++|+..+..+ ....
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~---~~~~ 174 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEE---LLSR 174 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHH---HHHH
Confidence 00 01111111111111 13999999999974 12 33344555565 68999999998765321 1133
Q ss_pred HHhhccceeeecc
Q 026304 158 IIPLADTVTKLTA 170 (240)
Q Consensus 158 L~~~ad~i~~l~~ 170 (240)
+..++|-++.|+.
T Consensus 175 ~~~l~DgvI~L~~ 187 (234)
T PRK06067 175 IRSICDVYLKLRA 187 (234)
T ss_pred HHhheEEEEEEEe
Confidence 4677888887764
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=1.3e-09 Score=100.31 Aligned_cols=143 Identities=21% Similarity=0.151 Sum_probs=82.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-eEEee--ccch-----------hcccCCCeEEEccCc--
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-NIAMI--KSSK-----------DTRYAIDSVVTHDGA-- 84 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-~i~~~--~~~~-----------~~~~~~~~~v~q~~~-- 84 (240)
++++ |.+.+|++++|+|+||+|||||+ ++|+|+.-... .+... .... ....+...++.+...
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl-~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~ 226 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLM-GMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA 226 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH
Confidence 7899 99999999999999999999999 99998732111 11111 0000 000111123332111
Q ss_pred eecceecCcchhHHHhhchhhhccCcEEEEc-----------------CccC--------hHHHHHHHHHHHh-cCCC--
Q 026304 85 KLPCWALPELTSFRQKLGDDAYAKLDVIGID-----------------EAQF--------FEDLYEFCCNAAD-HDGK-- 136 (240)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~p~lllLD-----------------EP~~--------~~~i~~~l~~l~~-~~g~-- 136 (240)
........-......++..+ .+-=+|++| ||-. +..+.+++.++.. ..|.
T Consensus 227 ~~r~~~~~~a~~iAEyfr~~--g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT 304 (438)
T PRK07721 227 LMRIKGAYTATAIAEYFRDQ--GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT 304 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHC--CCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 00000000001111112110 122245556 7622 4467777777763 2575
Q ss_pred ---EEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 137 ---TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 137 ---tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
||++.+||++. .+||++..+.+ +++.+++.+
T Consensus 305 ~~~TVlv~~hdm~e------------~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 305 AFYTVLVDGDDMNE------------PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred eEEEEEEECCCCCc------------hhhhhEEEecCEEEEEeccHH
Confidence 99999999983 68999999999 888887754
No 435
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=3.5e-09 Score=91.76 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=25.9
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
+++.++++.+| +.+|+|||||||||++ .+|.
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll-~Ai~ 42 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLL-EAIS 42 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence 56677777776 7999999999999998 7764
No 436
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.87 E-value=7.6e-09 Score=95.90 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=78.5
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHh
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
--+++|+++.|.|++|+|||||++.++..+.-.|.++.++.... ..|....++..+...++....+ ..+...
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~---~~I~~~ 165 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNW---EQICAN 165 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCH---HHHHHH
Confidence 36899999999999999999999555444444455554443221 1111111222221111111111 111111
Q ss_pred hchhhhccCcEEEEcCccC---------------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce
Q 026304 101 LGDDAYAKLDVIGIDEAQF---------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV 165 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~---------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i 165 (240)
+ .-.+|+++++|.-++ ..+++..|.+++++.|.|+++++|....- .+.....+..++|.|
T Consensus 166 i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg--~~aG~~~le~lvD~V 240 (454)
T TIGR00416 166 I---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEG--SIAGPKVLEHMVDTV 240 (454)
T ss_pred H---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCC--ccCCcccEeeeceEE
Confidence 1 125899999997643 12344456677666899999999976531 111123347789999
Q ss_pred eeecc
Q 026304 166 TKLTA 170 (240)
Q Consensus 166 ~~l~~ 170 (240)
+.|+.
T Consensus 241 I~Le~ 245 (454)
T TIGR00416 241 LYFEG 245 (454)
T ss_pred EEEec
Confidence 99875
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.81 E-value=1.4e-08 Score=83.17 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhc--ccCCCeEEEccCc--eecceecCcchhH
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDT--RYAIDSVVTHDGA--KLPCWALPELTSF 97 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~--~~~~~~~v~q~~~--~~~~~~~~~~~~~ 97 (240)
-+.+.+.+|+.++|+||||||||||+ +.|.++.... ..+..-.+.... .....++.++... ..+..+..+..
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 93 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL-- 93 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH--
Confidence 34567899999999999999999999 9999974332 222221111110 0111233333221 11122222222
Q ss_pred HHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCE-EEEEecChh
Q 026304 98 RQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKT-VVVAGLDGD 146 (240)
Q Consensus 98 ~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~t-vi~vtHd~~ 146 (240)
...+-.+|++++++|-...+ ..++++. +. .|.. ++.+-|-.+
T Consensus 94 ----~~~lR~~pd~i~igEir~~e-a~~~~~a-~~-tGh~g~~~T~Ha~s 136 (186)
T cd01130 94 ----RSALRMRPDRIIVGEVRGGE-ALDLLQA-MN-TGHPGGMTTIHANS 136 (186)
T ss_pred ----HHHhccCCCEEEEEccCcHH-HHHHHHH-Hh-cCCCCceeeecCCC
Confidence 22234689999999996643 4565554 44 5776 777777544
No 438
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.76 E-value=2.5e-08 Score=84.10 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=28.6
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMI 65 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~ 65 (240)
--+++|+++.|.||+|+|||||...++......|..+..+
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~i 54 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYV 54 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 4689999999999999999999834443322345554443
No 439
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.75 E-value=1.7e-08 Score=84.55 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=35.9
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
....++++||||.. +..+.++|+++.+ +.-+|++||+.... ..||+.+.+.
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~-----------~~a~~~~~v~ 212 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMF-----------EDADKLIGVT 212 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHH-----------TT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccc--cccccccccccccc-----------cccccccccc
Confidence 46788999999966 4578888888764 47799999998776 7788887654
No 440
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.74 E-value=2.4e-08 Score=99.05 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=65.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccC---ceecceec--
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWAL-- 91 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~~-- 91 (240)
-+|+++. ..+.++.|.|||++||||+| |.++-..+ -|-.+.. ...+.+.. .+..+.+ .+....+-
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~l-r~v~l~~ilAq~G~~VPa----~~a~i~~~d~I~triga~d~i~~g~STF~ 671 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYM-RQVALIVLLAQIGSFVPA----ESARIGIVDRIFTRIGASDDLASGRSTFM 671 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHH-HHHHHHHHHHhcCCceec----cceEecccCeeeeccCcccccccCcccHH
Confidence 3566666 66789999999999999999 98765422 2222211 11111110 1111111 11111110
Q ss_pred CcchhHHHhhchhhhccCcEEEEcCc---cC----hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 92 PELTSFRQKLGDDAYAKLDVIGIDEA---QF----FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 92 ~~~~~~~~~~~~~l~~~p~lllLDEP---~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.+.......+ ..+.++.++|+||| |+ ....+.++..+.+..+.+++++||+.+..
T Consensus 672 ~E~~~~~~il--~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~ 733 (854)
T PRK05399 672 VEMTETANIL--NNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT 733 (854)
T ss_pred HHHHHHHHHH--HhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH
Confidence 0111111111 12468999999999 66 23456667777763358999999995544
No 441
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.73 E-value=6.7e-08 Score=86.66 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=64.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeec-cchhcccCCCeEEEccCceecceecCcchhHHHhhchhh
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIK-SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA 105 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~-~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l 105 (240)
.++.++.|.||+||||||++ +.+.+... .+..+.... +..........++.|... ......+...+...+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~ev------g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREV------GLDTLSFANALRAAL 192 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhhhccCccceEEcccc------CCCCcCHHHHHHHhh
Confidence 46889999999999999999 88877432 123333332 111111111122222111 011123333344456
Q ss_pred hccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 106 YAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 106 ~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
-++|++|++||+...... ....+.+. .|.+|+.+.|-.+-.
T Consensus 193 r~~pd~i~vgEird~~~~-~~~l~aa~-tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 193 REDPDVILIGEMRDLETV-ELALTAAE-TGHLVFGTLHTNSAA 233 (343)
T ss_pred ccCCCEEEEeCCCCHHHH-HHHHHHHH-cCCcEEEEEcCCCHH
Confidence 689999999999654333 33334455 699999999986554
No 442
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.71 E-value=2.6e-09 Score=98.16 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=28.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLR 50 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~ 50 (240)
|++||+++++||+++|+||||||||||| +
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLL-r 50 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEIL-A 50 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHH-h
Confidence 8899999999999999999999999999 8
No 443
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.70 E-value=4.7e-08 Score=88.44 Aligned_cols=136 Identities=18% Similarity=0.108 Sum_probs=76.6
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHhh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL 101 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~ 101 (240)
-+.+|+++.|.|++|+|||||++.+...+.-.|.++.++.... ..|....++..+...++.... ...+...+
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETN---LEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHH
Confidence 5889999999999999999999444433333445555443211 111111121111111111111 11121211
Q ss_pred chhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304 102 GDDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT 166 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~ 166 (240)
.-.+|+++++|+-++. .++...|.+++++.++++++++|-...- .+.....|..++|.++
T Consensus 155 ---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g--~~aG~~~leh~vD~Vi 229 (372)
T cd01121 155 ---EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEG--SIAGPKVLEHMVDTVL 229 (372)
T ss_pred ---HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC--cccCcccchhhceEEE
Confidence 1358999999997441 1344556677766899999999954321 1222345578899998
Q ss_pred eecc
Q 026304 167 KLTA 170 (240)
Q Consensus 167 ~l~~ 170 (240)
.++.
T Consensus 230 ~le~ 233 (372)
T cd01121 230 YFEG 233 (372)
T ss_pred EEEc
Confidence 8864
No 444
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=7.2e-08 Score=83.19 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=76.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ 99 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~ 99 (240)
|.+++| +++|+.+.|+||+|+|||+|+ .+|... ...|..+...+...... .+. ... .... +..
T Consensus 93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa-~al~~~a~~~G~~v~~~~~~~l~~----~l~-------~a~-~~~~--~~~ 156 (259)
T PRK09183 93 LRSLSF-IERNENIVLLGPSGVGKTHLA-IALGYEAVRAGIKVRFTTAADLLL----QLS-------TAQ-RQGR--YKT 156 (259)
T ss_pred HhcCCc-hhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEEeHHHHHH----HHH-------HHH-HCCc--HHH
Confidence 667888 999999999999999999999 888543 23455544332111000 000 000 0000 101
Q ss_pred hhchhhhccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc-chHHHHHhhccceeeecce
Q 026304 100 KLGDDAYAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF-GSVLDIIPLADTVTKLTAR 171 (240)
Q Consensus 100 ~~~~~l~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f-~~~~~L~~~ad~i~~l~~~ 171 (240)
.+. .....|+++++||-.. ...+.+++....+ .+.+||.+-..+....+.| +....-.++.||++.....
T Consensus 157 ~~~-~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~-~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~ 234 (259)
T PRK09183 157 TLQ-RGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV 234 (259)
T ss_pred HHH-HHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHh-cCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEE
Confidence 111 1246899999999844 1246676666544 4555444444566666666 3332234566777644434
Q ss_pred eeccC
Q 026304 172 CELCG 176 (240)
Q Consensus 172 ~~~~g 176 (240)
+...|
T Consensus 235 i~~~g 239 (259)
T PRK09183 235 VQIKG 239 (259)
T ss_pred EeecC
Confidence 44444
No 445
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.64 E-value=5.1e-08 Score=82.97 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCC-CeEEEccCceecceecC-cchhH
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALP-ELTSF 97 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~-~~~~~ 97 (240)
++.+.-....++.|.|||.+||||+| |.++-..+ -|--+ + ......+. ..+..+-+ ..-++. +...|
T Consensus 35 di~~~~~~~~~~iiTGpN~sGKSt~l-k~i~~~~ilaq~G~~V---P-A~~~~i~~~d~I~t~~~---~~d~~~~~~S~F 106 (235)
T PF00488_consen 35 DIELSNNKSRIIIITGPNMSGKSTFL-KQIGLIVILAQIGCFV---P-AESAEIPIFDRIFTRIG---DDDSIESGLSTF 106 (235)
T ss_dssp EEEESSSSSSEEEEESSTTSSHHHHH-HHHHHHHHHHTTT--B---S-SSEEEEE--SEEEEEES------SSTTSSSHH
T ss_pred eeecCCCceeEEEEeCCCccchhhHH-HHHHHHhhhhhcCcee---e-ecccccccccEEEeecc---cccccccccccH
Confidence 44443333459999999999999999 98854322 12111 1 10011000 01111100 000111 11111
Q ss_pred HHhh---ch--hhhccCcEEEEcCc---cCh----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 98 RQKL---GD--DAYAKLDVIGIDEA---QFF----EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 98 ~~~~---~~--~l~~~p~lllLDEP---~~~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
...+ .. ..+.+..++|+||+ |+- .-...++..+.++.+..++++||+.+..
T Consensus 107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~ 169 (235)
T PF00488_consen 107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA 169 (235)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence 1111 11 12456779999999 331 2345556666652477899999999775
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.59 E-value=9.9e-08 Score=82.37 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=90.8
Q ss_pred EEEcceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----ccc-C-CCeEEE
Q 026304 11 VTTNQVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----TRY-A-IDSVVT 80 (240)
Q Consensus 11 l~~~~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~~~-~-~~~~v~ 80 (240)
|..+.|+.++ |+.+.--+.+|+++.|.||+|+|||||+..++...... |..+..++-... .+. . ..++-+
T Consensus 8 ~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~ 87 (271)
T cd01122 8 LSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL 87 (271)
T ss_pred ccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCc
Confidence 3344566666 88887789999999999999999999984444333333 666655542210 010 0 000000
Q ss_pred c----------------------cCcee--cceecCcchhHHHhhchh-hhccCcEEEEcCccC--------------hH
Q 026304 81 H----------------------DGAKL--PCWALPELTSFRQKLGDD-AYAKLDVIGIDEAQF--------------FE 121 (240)
Q Consensus 81 q----------------------~~~~~--~~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~--------------~~ 121 (240)
+ .+.++ ..........+...+... .-.+|+++++|..+. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~ 167 (271)
T cd01122 88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALD 167 (271)
T ss_pred ccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHH
Confidence 0 00000 000000011111111111 124799999998744 12
Q ss_pred HHHHHHHHHHhcCCCEEEEEecChhhhh------------cccchHHHHHhhccceeeecc
Q 026304 122 DLYEFCCNAADHDGKTVVVAGLDGDYLR------------RSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~------------~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+++..|++++++.++||++++|-..... ..+..+..+...||-++.|..
T Consensus 168 ~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r 228 (271)
T cd01122 168 EIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER 228 (271)
T ss_pred HHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence 4556677777778999999998654321 124456677899999999976
No 447
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=1e-07 Score=94.83 Aligned_cols=65 Identities=23% Similarity=0.190 Sum_probs=55.2
Q ss_pred hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
++.+| +++|||||++ ...++++|+++.+ .|.|||+++||++++ . .||++++| ++
T Consensus 502 L~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i----------~-~aD~vi~LgpgaG~~~ 569 (924)
T TIGR00630 502 IGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETI----------R-AADYVIDIGPGAGIHG 569 (924)
T ss_pred HhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH----------h-hCCEEEEecccccCCC
Confidence 45665 8999999988 4579999999987 699999999999988 5 89999999 67
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
++++.|+++.+
T Consensus 570 G~Iv~~g~~~el 581 (924)
T TIGR00630 570 GEVVASGTPEEI 581 (924)
T ss_pred CEEeeccCHHHH
Confidence 88888887654
No 448
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.57 E-value=1.2e-07 Score=94.67 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=55.6
Q ss_pred hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
+..+| ++++||||++ ...++++|+++++ .|.|||+++||++++ . .||+|++| ++
T Consensus 504 L~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~~i----------~-~aD~vi~LgpgaG~~~ 571 (943)
T PRK00349 504 IGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDEDTI----------R-AADYIVDIGPGAGVHG 571 (943)
T ss_pred HhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------H-hCCEEEEeccccCCCC
Confidence 45675 9999999988 4579999999986 799999999999988 5 69999999 77
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
++++.|+++.+
T Consensus 572 G~iv~~g~~~e~ 583 (943)
T PRK00349 572 GEVVASGTPEEI 583 (943)
T ss_pred CEEeeccCHHHH
Confidence 88888887654
No 449
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.52 E-value=3.8e-07 Score=84.49 Aligned_cols=141 Identities=17% Similarity=0.089 Sum_probs=77.0
Q ss_pred ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcc
Q 026304 21 DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPEL 94 (240)
Q Consensus 21 l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~ 94 (240)
|+.+ .--+.+|+++.|.|+.|+|||||+++++....-.|.++.++.... ..|....++-.+.-.+... .+.
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e---~~l 145 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAE---TNL 145 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCC---CCH
Confidence 4443 346889999999999999999999444433333455554443221 0111001111111001111 111
Q ss_pred hhHHHhhchhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHH
Q 026304 95 TSFRQKLGDDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDII 159 (240)
Q Consensus 95 ~~~~~~~~~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~ 159 (240)
..+...+ .-.+|+++++|+.++. .++...|.+++++.+.++++++|-...- . +.....+.
T Consensus 146 ~~i~~~i---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~-~-~ag~~~le 220 (446)
T PRK11823 146 EAILATI---EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEG-A-IAGPRVLE 220 (446)
T ss_pred HHHHHHH---HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCC-C-cCCcchhh
Confidence 1111111 1258999999998641 1344456667666899999999954321 1 11123457
Q ss_pred hhccceeeec
Q 026304 160 PLADTVTKLT 169 (240)
Q Consensus 160 ~~ad~i~~l~ 169 (240)
.++|.++.+.
T Consensus 221 hlvD~Vi~le 230 (446)
T PRK11823 221 HMVDTVLYFE 230 (446)
T ss_pred hhCeEEEEEE
Confidence 7889888776
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=7.1e-07 Score=67.36 Aligned_cols=26 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.+..+.|+||+|+||||++ +.++...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~-~~l~~~~ 26 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLA-RALAREL 26 (148)
T ss_pred CCCEEEEECCCCCcHHHHH-HHHHhcc
Confidence 3678999999999999999 8887653
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.48 E-value=1.7e-06 Score=85.73 Aligned_cols=68 Identities=19% Similarity=0.058 Sum_probs=52.3
Q ss_pred hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
..+|.++++|||.. ...+.+.++++++ .|.+++++||+++.+.+. +....+...|++.++|.+ +....
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s-~~a~~i~~~~~t~i~L~n~~a~~~ 725 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERS-GIIDVLKESCPTKICLPNGAAREP 725 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcC-chHHHHHhcCCeEEECCCcccccc
Confidence 46899999999955 3467888888876 689999999999987332 445555688999999987 65433
No 452
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.47 E-value=2.4e-06 Score=77.78 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=81.4
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----hhCCceEEeeccch-hcccCCCeEEEc--------------cCce
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----SDNGRNIAMIKSSK-DTRYAIDSVVTH--------------DGAK 85 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----~~~g~~i~~~~~~~-~~~~~~~~~v~q--------------~~~~ 85 (240)
+-|++| ++.|+|.+--|||||| +.|..- .=+|++...-.+.. ..|.-....|.. +...
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL-~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~ 317 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLL-EALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTC 317 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHH-HHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCc
Confidence 458899 9999999999999999 888542 12455433222111 011000000110 1111
Q ss_pred ecceecCcchhHHHhhchhhhccCcEEEEcCccC------hH---------------HHHHHHHHHHhcCCCEEEEEecC
Q 026304 86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FE---------------DLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~---------------~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
|......+.....+.+...+-...++||+||=|+ ++ -+.+.++++.++.|.+.|+|+=-
T Consensus 318 FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg 397 (448)
T PF09818_consen 318 FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG 397 (448)
T ss_pred ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc
Confidence 2222223333444444445667899999999866 11 24566677766689877777665
Q ss_pred hhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 145 GDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 145 ~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
.... ...||+|+.|++ ++.
T Consensus 398 sgdy----------~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 398 SGDY----------FDVADRVIMMDEYRPK 417 (448)
T ss_pred chhh----------HhhCCEEEEecCccch
Confidence 5555 799999999998 654
No 453
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.46 E-value=1.5e-07 Score=63.20 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.1
Q ss_pred ecCCCCcccC-cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNS-GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~-Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++.++++.+ |+++.|.|||||||||++ ..+.-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTll-DAi~~~ 46 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLL-DAIQTV 46 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 5667788875 579999999999999999 877543
No 454
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.40 E-value=1.3e-06 Score=73.41 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=74.7
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEc----cCceecceecCcc--
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTH----DGAKLPCWALPEL-- 94 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q----~~~~~~~~~~~~~-- 94 (240)
--+++|.++.|.|+.|+|||++.++++....-.|..+..+..... .+....++-.+ ....+-.....+.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKT 90 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence 358899999999999999999985665543344666554432211 01000011000 0000000000000
Q ss_pred --hhHHHhhchh-hhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc-hHHHHH
Q 026304 95 --TSFRQKLGDD-AYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG-SVLDII 159 (240)
Q Consensus 95 --~~~~~~~~~~-l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~-~~~~L~ 159 (240)
..+...+... .-..++.+++|=.+. +..+.++++.+++ .|.|+++++|.... ++.. ....+.
T Consensus 91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~--~~~~~~~~~~~ 167 (224)
T TIGR03880 91 SLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKT--NVFASKYGLIE 167 (224)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCC--CCCccCCCceE
Confidence 0111111110 123688999994332 2356777778876 79999999996421 0000 011237
Q ss_pred hhccceeeecc
Q 026304 160 PLADTVTKLTA 170 (240)
Q Consensus 160 ~~ad~i~~l~~ 170 (240)
.+||.|+.|+.
T Consensus 168 ~l~D~vI~L~~ 178 (224)
T TIGR03880 168 YLADGVIILKY 178 (224)
T ss_pred EEEeEEEEEee
Confidence 78999999964
No 455
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.38 E-value=6.4e-07 Score=81.07 Aligned_cols=55 Identities=25% Similarity=0.080 Sum_probs=40.3
Q ss_pred hccCcEEEEcCccCh-----H-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 106 YAKLDVIGIDEAQFF-----E-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 106 ~~~p~lllLDEP~~~-----~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
-..+++.+.|||.+. . ..-..+++..-+.++|-++|.||.-.+ --+|||+++...
T Consensus 472 GKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma----------TYladrvivf~G 532 (592)
T KOG0063|consen 472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA----------TYLADRVIVFEG 532 (592)
T ss_pred CCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH----------HhhcceeEEEec
Confidence 457899999999661 1 223344554433678999999998777 778999998875
No 456
>PRK13764 ATPase; Provisional
Probab=98.37 E-value=3.5e-06 Score=80.30 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=74.8
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY 106 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (240)
...+..+.|.||.||||||++ +.+.... -.++.+..+......... ..+.| +.. ... .+.......+.
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El~~~--~~i~q----~~~--~~~--~~~~~~~~lLR 322 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDLQVP--PEITQ----YSK--LEG--SMEETADILLL 322 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccccCC--CcceE----Eee--ccc--cHHHHHHHHHh
Confidence 345667899999999999999 8887653 334444333211111110 11111 100 000 11111112256
Q ss_pred ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------hHHHHHhhccceeeecc-ee--eccCC
Q 026304 107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------SVLDIIPLADTVTKLTA-RC--ELCGK 177 (240)
Q Consensus 107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~~~~L~~~ad~i~~l~~-~~--~~~g~ 177 (240)
.+||++++||.-.. +-++++..++. .|..++.+-|-.+-. +.+. ....+..++|+|+.+++ ++ +++.+
T Consensus 323 ~rPD~IivGEiRd~-Et~~~~~~l~~-ag~GvigTlHA~sa~-~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~v~~~~ 399 (602)
T PRK13764 323 VRPDYTIYDEMRKT-EDFKIFADMRL-AGVGMVGVVHATRPI-DAIQRFIGRVELGMIPQIVDTVIFIEDGEVSKVYDLE 399 (602)
T ss_pred hCCCEEEECCCCCH-HHHHHHHHHHH-cCCeEEEEECCCCHH-HHHHHHHhhhhhchHHHhhcEEEEEeCCEEEEEEeee
Confidence 79999999999553 34566666655 577788888822111 0011 11122678999999998 66 44444
No 457
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.34 E-value=1.2e-06 Score=73.12 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=72.3
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccC-CCeEEEc---cCc-eecceecCcchhHHH
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYA-IDSVVTH---DGA-KLPCWALPELTSFRQ 99 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~-~~~~v~q---~~~-~~~~~~~~~~~~~~~ 99 (240)
-+++|.++.|.|++|||||||.+.++......|..+..+.... ..+.. ..+...+ ... .+......+......
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 5889999999999999999998555544334455555442211 00000 0000000 000 011111111111111
Q ss_pred hhchhhhccCcEEEEcCccCh---------------HHH---HHHHHHHHhcCCCEEEEEecChhhhhc----ccchHHH
Q 026304 100 KLGDDAYAKLDVIGIDEAQFF---------------EDL---YEFCCNAADHDGKTVVVAGLDGDYLRR----SFGSVLD 157 (240)
Q Consensus 100 ~~~~~l~~~p~lllLDEP~~~---------------~~i---~~~l~~l~~~~g~tvi~vtHd~~~~~~----~f~~~~~ 157 (240)
.+....-.+++++++|=.++. .++ +..|+.++++.+++||+++|-...... +.++ ..
T Consensus 95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g-~~ 173 (218)
T cd01394 95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGG-HT 173 (218)
T ss_pred HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCC-cc
Confidence 111112235999999987541 122 233566766689999999985432210 0000 12
Q ss_pred HHhhccceeeecc
Q 026304 158 IIPLADTVTKLTA 170 (240)
Q Consensus 158 L~~~ad~i~~l~~ 170 (240)
+..++|.++.|+.
T Consensus 174 ~~~~~d~~i~l~~ 186 (218)
T cd01394 174 LEHWSKVILRLEK 186 (218)
T ss_pred hhcceeEEEEEEE
Confidence 4667788888874
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.34 E-value=8.6e-07 Score=81.39 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=36.2
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++-+.++..| ++. .|.+.+|+.++|+|+||+|||||+ ++|++..
T Consensus 130 ~~~r~~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl-~~Ia~~~ 180 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLL-GMIAKNA 180 (432)
T ss_pred chheechhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHH-HHHhccC
Confidence 34555555544 455 599999999999999999999999 9999864
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.31 E-value=2.1e-06 Score=80.43 Aligned_cols=143 Identities=12% Similarity=0.002 Sum_probs=75.7
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHc-CchhCCceEEeeccch-----hcccCCCeEEEcc----Ccee-cc------
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIR-SESDNGRNIAMIKSSK-----DTRYAIDSVVTHD----GAKL-PC------ 88 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~-gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~----~~~~-~~------ 88 (240)
=-+++|..+.|.||+|||||||.++.+. |..-.|.+...+.-.. .......++-.+. +.+. ..
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence 3589999999999999999999955554 3333255544332111 0000001111110 0000 00
Q ss_pred ----eecCcchhHHHhhchh-hhccCcEEEEc--Cc-----cC----hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc
Q 026304 89 ----WALPELTSFRQKLGDD-AYAKLDVIGID--EA-----QF----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF 152 (240)
Q Consensus 89 ----~~~~~~~~~~~~~~~~-l~~~p~lllLD--EP-----~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f 152 (240)
....+...+...+... .-.+++.+++| -+ .. +..++++++.+++ .|.|+++++|+.+.....
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~- 173 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPI- 173 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHH-CCCEEEEEecCccccccc-
Confidence 0001111122221111 12478888888 22 11 3467778888876 799999999998653110
Q ss_pred chHHHHHhhccceeeecc
Q 026304 153 GSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 153 ~~~~~L~~~ad~i~~l~~ 170 (240)
........+||.|+.|+.
T Consensus 174 ~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 174 ARYGVEEFVSDNVVILRN 191 (484)
T ss_pred ccCCceeEeeeeEEEEEE
Confidence 000011568999999985
No 460
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.30 E-value=3.7e-06 Score=75.80 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=62.5
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeec-cchhc---ccCCCeEEEccCceecceecCcchhHHHh
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIK-SSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~-~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
++|.+++|+||+||||||+| +.|.+... .+..+.... +.... .....+++.|... + .+...+...
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~----~~~~~~~~~ 204 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--P----RHLNNFAAG 204 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--c----ccccCHHHH
Confidence 48899999999999999999 99988632 123333221 11110 0001134444321 0 011123333
Q ss_pred hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304 101 LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~ 147 (240)
+...+-++|+++++.|.-..+.+...+ +.+. .|..|+-+-|-.+.
T Consensus 205 l~~aLR~~Pd~i~vGEiRd~et~~~al-~aa~-tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 205 VRNALRRKPHAILVGEARDAETISAAL-EAAL-TGHPVYTTLHSSGV 249 (358)
T ss_pred HHHHhccCCCEEeeeeeCCHHHHHHHH-HHHH-cCCcEEEeeccCCH
Confidence 333455799999999975443333444 4444 68888888886543
No 461
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.29 E-value=2.7e-06 Score=76.63 Aligned_cols=134 Identities=20% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----hCCceEEeeccch-hcccCCCeEEE-ccCce-ecce------
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----DNGRNIAMIKSSK-DTRYAIDSVVT-HDGAK-LPCW------ 89 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~~g~~i~~~~~~~-~~~~~~~~~v~-q~~~~-~~~~------ 89 (240)
.-+-|++| ++.|+|+|--|||||+ ..|..-. =+|+....-.... .....-...++ ++-.+ +..+
T Consensus 236 ~gmgIp~g-it~ItG~nfhGKTTLl-~Aie~gvdnHipGDGRE~vVTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdT 313 (554)
T COG3044 236 VGMGIPQG-ITLITGGNFHGKTTLL-TAIERGVDNHIPGDGRERVVTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDT 313 (554)
T ss_pred eccCCCcc-eEEEecCCccchhHHH-HHHHhcccccCCCCCceEEEehhhhhhhhcccceeeeccchHHHHHhCCCCCCC
Confidence 44678999 9999999999999999 8885531 2444322211110 00100001111 11111 1111
Q ss_pred ------ecCcchhHHHhhchhhhccCcEEEEcCccC-------------------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 90 ------ALPELTSFRQKLGDDAYAKLDVIGIDEAQF-------------------FEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 90 ------~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-------------------~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
+..+...+..++...+-...+.||+||-++ ...+.+.+.++.. .+.++|.+|--
T Consensus 314 p~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~g-d~iS~iaVtgg 392 (554)
T COG3044 314 PDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRG-DLISTIAVTGG 392 (554)
T ss_pred cccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhcc-CceEEEEEecc
Confidence 112233344444444567899999999866 1134444444443 35888888888
Q ss_pred hhhhhcccchHHHHHhhccceeeecc
Q 026304 145 GDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 145 ~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++.. ...+||+++|++
T Consensus 393 lddl----------la~aDRaIvMeD 408 (554)
T COG3044 393 LDDL----------LAVADRAIVMED 408 (554)
T ss_pred chhh----------hhhcceEEEecc
Confidence 8777 899999999997
No 462
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.27 E-value=2.3e-06 Score=71.34 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+||||||||+.+.+.|.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~ 33 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGE 33 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999994467664
No 463
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=2.9e-06 Score=64.70 Aligned_cols=101 Identities=24% Similarity=0.140 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcch---hHHHhhchhh
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT---SFRQKLGDDA 105 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~---~~~~~~~~~l 105 (240)
.+..+.|+||.|+||||++ +.+..... .+..+......... ......... ..........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 81 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASDLL---------------EGLVVAELFGHFLVRLLFELAE 81 (151)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHhhcCCCCeEEEehhhhh---------------hhhHHHHHhhhhhHhHHHHhhc
Confidence 5788999999999999999 88876432 12222222111000 000000000 0001111123
Q ss_pred hccCcEEEEcCccC-----hHHHHHHHHHHHh----cCCCEEEEEecChh
Q 026304 106 YAKLDVIGIDEAQF-----FEDLYEFCCNAAD----HDGKTVVVAGLDGD 146 (240)
Q Consensus 106 ~~~p~lllLDEP~~-----~~~i~~~l~~l~~----~~g~tvi~vtHd~~ 146 (240)
..++.+|++||... ...+.+.+..... ..+..+|+++++..
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 46789999999974 2345666665542 14788999998765
No 464
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.26 E-value=3e-06 Score=70.05 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=24.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++|++++|+||+|||||||+ +.|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~-~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLV-KALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 58999999999999999999 999885
No 465
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.26 E-value=2.2e-05 Score=65.19 Aligned_cols=142 Identities=17% Similarity=0.102 Sum_probs=86.1
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcc----------cCCCeEEEccC-ceecc--eec
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTR----------YAIDSVVTHDG-AKLPC--WAL 91 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~----------~~~~~~v~q~~-~~~~~--~~~ 91 (240)
.--|+-|.++.|-|+||+|||-|..+.+.|+..+|..+.......-.+ +....+..... ..++. ..+
T Consensus 22 GGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 22 GGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred cCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 344788999999999999999999899999988998888765432111 00000000000 00110 011
Q ss_pred Ccch----hHHHhh-chhhhccCcEEEEcCccC---------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304 92 PELT----SFRQKL-GDDAYAKLDVIGIDEAQF---------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD 157 (240)
Q Consensus 92 ~~~~----~~~~~~-~~~l~~~p~lllLDEP~~---------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~ 157 (240)
..+. .+...+ ......+-+++++|=-+. ..+++..++.+.+ .|++|+++-|--.+-+ +...+
T Consensus 102 ~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d-~gKvIilTvhp~~l~e---~~~~r 177 (235)
T COG2874 102 NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSD-LGKVIILTVHPSALDE---DVLTR 177 (235)
T ss_pred ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHh-CCCEEEEEeChhhcCH---HHHHH
Confidence 1111 111111 111256888999996533 2367777888887 7999999988654431 24566
Q ss_pred HHhhccceeeecc
Q 026304 158 IIPLADTVTKLTA 170 (240)
Q Consensus 158 L~~~ad~i~~l~~ 170 (240)
+...||-.+.|+.
T Consensus 178 irs~~d~~l~L~~ 190 (235)
T COG2874 178 IRSACDVYLRLRL 190 (235)
T ss_pred HHHhhheeEEEEh
Confidence 6788998887764
No 466
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.25 E-value=2e-06 Score=85.24 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccC---ceecceec--Cc
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWAL--PE 93 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~~--~~ 93 (240)
|+++. ....++.|.|||.+||||+| |.++=..+ -|--+ |....+.+.. .+..+.+ .+....+- .+
T Consensus 585 di~l~-~~~~~~iITGPNmgGKSt~l-rqvali~imAq~G~~V----PA~~a~i~~~D~Iftrig~~d~i~~g~STF~~E 658 (840)
T TIGR01070 585 DLEMA-HNRRMLLITGPNMGGKSTYM-RQTALIALLAQIGSFV----PAESAELPLFDRIFTRIGASDDLASGRSTFMVE 658 (840)
T ss_pred eeecC-CCccEEEEECCCCCCchHHH-HHHHHHHHHHhcCCCc----cchheEeccccEEEEecCcccchhcCcchHHHH
Confidence 44444 33468999999999999999 87753322 12211 1111111111 1111111 11111100 01
Q ss_pred chhHHHhhchhhhccCcEEEEcCc---cC-hH--H-HHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 94 LTSFRQKLGDDAYAKLDVIGIDEA---QF-FE--D-LYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 94 ~~~~~~~~~~~l~~~p~lllLDEP---~~-~~--~-i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
..+....+ ..+.++.++|+||+ |+ .+ . ...++..+.+..+..++++||..+..
T Consensus 659 m~e~a~IL--~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~ 718 (840)
T TIGR01070 659 MTEAANIL--HNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT 718 (840)
T ss_pred HHHHHHHH--hhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence 11111111 12568999999999 54 21 2 33344444443577899999998765
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.24 E-value=2.7e-05 Score=66.17 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=43.7
Q ss_pred hccCcEEEEcCccC------------hHHHHHHHHHHHhcCCCEEEEEecChhhhh------cccchHHHHHhhccceee
Q 026304 106 YAKLDVIGIDEAQF------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLR------RSFGSVLDIIPLADTVTK 167 (240)
Q Consensus 106 ~~~p~lllLDEP~~------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~------~~f~~~~~L~~~ad~i~~ 167 (240)
..+|+++++| |.. ...+++.|.+++++.|.+|++++|...... +-.-++..|..-++.++.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~ 187 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRA 187 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCcccccccCcHHHHhcccceEEE
Confidence 4799999999 631 235778888888767999999999874321 223345555555666666
Q ss_pred ecc
Q 026304 168 LTA 170 (240)
Q Consensus 168 l~~ 170 (240)
+..
T Consensus 188 l~~ 190 (239)
T cd01125 188 LTR 190 (239)
T ss_pred Eee
Confidence 654
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=5.7e-07 Score=82.61 Aligned_cols=34 Identities=18% Similarity=-0.015 Sum_probs=32.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++++ |++.+|++++|+|+||+|||||+ ++|+|+.
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl-~~I~g~~ 179 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLL-GMITRYT 179 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHH-HHHhccc
Confidence 8899 99999999999999999999999 9999863
No 469
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.7e-06 Score=75.84 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=70.4
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHhh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL 101 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~ 101 (240)
-+-+|.++.|=|..|.||||||+++.+.+.-.+ ++.+....+ ..|....++-..+-.++....+.+......
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~-- 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE-- 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH--
Confidence 367899999999999999999988888765555 555543221 111111111112222333333332222221
Q ss_pred chhhhccCcEEEEcCccC---------------hHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304 102 GDDAYAKLDVIGIDEAQF---------------FEDLYEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~---------------~~~i~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
-.+|+++++|=.+. .++....|.+++++.+++++++.|---
T Consensus 166 ----~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTK 221 (456)
T COG1066 166 ----QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTK 221 (456)
T ss_pred ----hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcc
Confidence 26999999997743 235666677888878999999999553
No 470
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.20 E-value=5.9e-06 Score=68.55 Aligned_cols=143 Identities=13% Similarity=0.144 Sum_probs=70.9
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccCCC--eEEEc---cC-ceecceecCcchhHH
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYAID--SVVTH---DG-AKLPCWALPELTSFR 98 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~~~--~~v~q---~~-~~~~~~~~~~~~~~~ 98 (240)
-+++|.++.|.||+|||||||.+..+....-.|..+..+.... ..+.... .. ++ +. ..+...+..+.....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDR-PERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhC-hHHHhcCEEEEECCCHHHHHHHH
Confidence 4789999999999999999998555544333455554443221 0000000 00 00 00 011111111111112
Q ss_pred Hhhchhh-hccCcEEEEcCccCh-------------HH---HHHHHHHHHhcCCCEEEEEecChhhhhc-ccchH--HHH
Q 026304 99 QKLGDDA-YAKLDVIGIDEAQFF-------------ED---LYEFCCNAADHDGKTVVVAGLDGDYLRR-SFGSV--LDI 158 (240)
Q Consensus 99 ~~~~~~l-~~~p~lllLDEP~~~-------------~~---i~~~l~~l~~~~g~tvi~vtHd~~~~~~-~f~~~--~~L 158 (240)
..+...+ -.+|+++++|--++. .. ++..|.+++++.+.+++++.|-...... .+.+. ..+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~ 166 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLL 166 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchh
Confidence 2211111 127999999987431 02 2334566666689999999885432211 00000 123
Q ss_pred Hhhccceeeecc
Q 026304 159 IPLADTVTKLTA 170 (240)
Q Consensus 159 ~~~ad~i~~l~~ 170 (240)
..++|-++.|+.
T Consensus 167 ~~~~d~vi~l~~ 178 (209)
T TIGR02237 167 EHWSKVILRLEK 178 (209)
T ss_pred heeeeEEEEEEe
Confidence 566777776654
No 471
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=98.20 E-value=2.3e-06 Score=72.46 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=79.9
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----ccc--CCCeEEE---ccCceec--------
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----TRY--AIDSVVT---HDGAKLP-------- 87 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~~~--~~~~~v~---q~~~~~~-------- 87 (240)
-+++|+++.|.|+.|+|||||+++++...... |..+..++-... .|. ...++-. +...+..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAE 88 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 57899999999999999999985666655444 666655542210 010 0000000 0000000
Q ss_pred --------ceec-----CcchhHHHhhchh-hhccCcEEEEcCccC-------------hHHHHHHHHHHHhcCCCEEEE
Q 026304 88 --------CWAL-----PELTSFRQKLGDD-AYAKLDVIGIDEAQF-------------FEDLYEFCCNAADHDGKTVVV 140 (240)
Q Consensus 88 --------~~~~-----~~~~~~~~~~~~~-l~~~p~lllLDEP~~-------------~~~i~~~l~~l~~~~g~tvi~ 140 (240)
.+.+ .....+...+... ...+|+++++|=-+. ...++..|++++++.+.++++
T Consensus 89 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0000 0001111111110 123899999994321 125677778888778999999
Q ss_pred EecChhhhh---------cccchHHHHHhhccceeeecc
Q 026304 141 AGLDGDYLR---------RSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 141 vtHd~~~~~---------~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++|-..... ..+..+..+...||-++.|..
T Consensus 169 ~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~ 207 (242)
T cd00984 169 LSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYR 207 (242)
T ss_pred ecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEec
Confidence 999543321 234444556778899988876
No 472
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.18 E-value=1.8e-06 Score=79.65 Aligned_cols=33 Identities=21% Similarity=0.008 Sum_probs=31.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++ |.+.+|+.++|+|+||+|||||+ ++|++.
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl-~~I~~~ 186 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLL-GMIARN 186 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence 7788 99999999999999999999999 999986
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=5.3e-06 Score=85.26 Aligned_cols=30 Identities=27% Similarity=0.094 Sum_probs=26.8
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++....+++++|+|++|+|||||+ +.+.+
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA-~~l~~ 229 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIA-RALFS 229 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHH-HHHHH
Confidence 4677889999999999999999999 98855
No 474
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.17 E-value=3.8e-06 Score=70.82 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
-+++|+++.|.||+|||||||+ ..++
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~-~~l~ 40 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLC-HQLA 40 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHH
Confidence 4889999999999999999999 5443
No 475
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.16 E-value=1.2e-06 Score=72.89 Aligned_cols=26 Identities=38% Similarity=0.345 Sum_probs=24.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++|++++|+||||||||||+ +.|.++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~-~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVA-RKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHH-HHHHHH
Confidence 68999999999999999999 999875
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=9e-06 Score=72.19 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=28.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
.+|++++++|||||||||++ ..|++. ...|..+...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~-~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTI-GKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCeEEEE
Confidence 57999999999999999999 777775 3445555543
No 477
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.14 E-value=1.5e-06 Score=71.06 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.|++++|+||||||||||+ ++|++.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~-~~l~~~ 25 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLL-AALRQR 25 (186)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHhcc
Confidence 3789999999999999999 999875
No 478
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=5.7e-06 Score=76.61 Aligned_cols=99 Identities=27% Similarity=0.325 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL 109 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p 109 (240)
-+.|.||.|+|||+|+ +.+..... .+..+..++...... .+ ...+.-.....+... ...++
T Consensus 132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~~~f~~----~~-------~~~~~~~~~~~f~~~----~~~~~ 195 (440)
T PRK14088 132 PLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKFLN----DL-------VDSMKEGKLNEFREK----YRKKV 195 (440)
T ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHHHHHH----HH-------HHHHhcccHHHHHHH----HHhcC
Confidence 4899999999999999 88876322 123333322111000 00 000000001112111 12379
Q ss_pred cEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEe-cChhhh
Q 026304 110 DVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAG-LDGDYL 148 (240)
Q Consensus 110 ~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vt-Hd~~~~ 148 (240)
++|++|||++ +.+++..+..+.+ .|+.+|++| |++..+
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l 241 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKL 241 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHH
Confidence 9999999976 2467788888876 567777766 777766
No 479
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=3e-06 Score=78.10 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=40.7
Q ss_pred CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+..++.++++..| ++.++ .+.+|+.++|+||||+|||||+ ++|+++
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL-~~Ia~l 188 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLL-AMLARA 188 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence 3468889999888 66675 8999999999999999999999 999987
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.14 E-value=1.4e-05 Score=67.16 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=72.6
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccC-CCeE----EEccCceecceecCcchhHH
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYA-IDSV----VTHDGAKLPCWALPELTSFR 98 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~-~~~~----v~q~~~~~~~~~~~~~~~~~ 98 (240)
--+++|.++.|.||.|+|||||.+.++......|..+..+.-.. ..+.. ...- +.+....+...+..+.....
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 35789999999999999999998555544434455555443220 00100 0000 00000011111111111111
Q ss_pred HhhchhhhccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhhhc-ccch--HHH
Q 026304 99 QKLGDDAYAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRR-SFGS--VLD 157 (240)
Q Consensus 99 ~~~~~~l~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~-~f~~--~~~ 157 (240)
..+...+..+++++++|--++. .+++..|++++++.+.+|+++.|-...... .... ...
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~ 177 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHT 177 (225)
T ss_pred HHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcch
Confidence 1111111168999999987431 112233556666689999999885432210 0000 112
Q ss_pred HHhhccceeeecc
Q 026304 158 IIPLADTVTKLTA 170 (240)
Q Consensus 158 L~~~ad~i~~l~~ 170 (240)
+..+||-++.|+.
T Consensus 178 ~~~~~d~ii~l~~ 190 (225)
T PRK09361 178 LEHWSKTILRLEK 190 (225)
T ss_pred hhhhccEEEEEEE
Confidence 4667777777753
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=8.5e-06 Score=75.91 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=33.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC-ceEEee
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG-RNIAMI 65 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g-~~i~~~ 65 (240)
+++.++.+..|.+++++||||+||||++ ..|++.. ..| +.+..+
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTi-aKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTT-AKLAARCVMRHGASKVALL 292 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHH-HHHHHHHHHhcCCCeEEEE
Confidence 4567777889999999999999999999 7777753 233 355444
No 482
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.12 E-value=9.9e-07 Score=71.84 Aligned_cols=32 Identities=34% Similarity=0.348 Sum_probs=25.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++++++++.+| +++|+||||+||||++ .+|.-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil-~ai~~ 41 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTIL-EAIRY 41 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHH-HHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHH-HHHHH
Confidence 46777788776 9999999999999999 87754
No 483
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.11 E-value=3e-05 Score=67.07 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=58.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
.++.++.|.||+||||||++ +.+..... .+..+..+........ .+. .|... .+ .....+...+...+-+
T Consensus 78 ~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E~~~--~~~-~q~~v-~~----~~~~~~~~~l~~~lR~ 148 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVEYQI--PGI-NQVQV-NE----KAGLTFARGLRAILRQ 148 (264)
T ss_pred cCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCceecC--CCc-eEEEe-CC----cCCcCHHHHHHHHhcc
Confidence 35669999999999999999 86654322 2333333321111111 111 11000 00 1112233333334457
Q ss_pred cCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304 108 KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
+||+++++|....+.....+ +.+. .|..++.+.|-.+
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~-~aa~-tGh~v~tTlHa~~ 185 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAV-QAAL-TGHLVLSTLHTND 185 (264)
T ss_pred CCCEEEeccCCCHHHHHHHH-HHHH-cCCcEEEEeccCC
Confidence 99999999996654444444 4444 5777777777544
No 484
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.11 E-value=3.9e-05 Score=76.57 Aligned_cols=62 Identities=21% Similarity=0.073 Sum_probs=44.9
Q ss_pred hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
..+|.++++|||.. ...+.+.++.+++ .|.+++++||+++.+.+. +....+...|+..++|.
T Consensus 685 ~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s-~i~~~ilen~~t~I~Lp 753 (852)
T PRK13891 685 KGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANS-GILDVIVESTATKIFLP 753 (852)
T ss_pred cCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhC-chHHHHHHcCCcceecC
Confidence 57899999999955 3467788888876 688999999999988442 22344555566555554
No 485
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.11 E-value=1.5e-06 Score=66.33 Aligned_cols=113 Identities=22% Similarity=0.314 Sum_probs=54.0
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhC------CceEEeeccchhc-ccCCC-eEEEccCceecceecCcchhHHHh
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDN------GRNIAMIKSSKDT-RYAID-SVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~------g~~i~~~~~~~~~-~~~~~-~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
+.+.++.|.||.|+||||++ +.+...... ..++..+...... ..... .+..+-...... -.....+...
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~ 78 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLI-KRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSL 78 (131)
T ss_dssp -----EEEEE-TTSSHHHHH-HHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHH-HHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHH
Confidence 35678999999999999999 666543111 2222222111100 00000 000000000000 0011112222
Q ss_pred hchhhhcc-CcEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecC
Q 026304 101 LGDDAYAK-LDVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 101 ~~~~l~~~-p~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
+...+-.. ..+|++||.+.. ..+++.|+.+.++.+.++|+++++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 22222223 359999999665 367888888877678899999987
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.10 E-value=4.2e-05 Score=75.96 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=44.5
Q ss_pred hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
..+|.++++|||.. .+.+.+.++.+++ .|..++++||+++.+... +....|.+-|...++|.+
T Consensus 640 ~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s-~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASKS-AISDTLVQQTATQIFLPN 709 (800)
T ss_pred cCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHhC-hhHHHHHHhCCeEEEcCC
Confidence 45899999999955 3367778888876 788999999999887443 334444555555444544
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.10 E-value=1.9e-06 Score=70.12 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=23.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+|++++|+|+|||||||++ ++++++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~-~~la~~ 26 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIG-SKIAAL 26 (176)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHh
Confidence 6999999999999999999 999985
No 488
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=2.3e-06 Score=77.58 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=41.1
Q ss_pred eEEEcceeEee------ec-----------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 10 AVTTNQVNSGR------DR-----------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 10 ~l~~~~ls~~~------l~-----------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++||++.| |+ |+++.+.+|+.++|+||.|+|||||+ +.|...
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~-~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLL-QKIAQA 191 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHH-HHHHHh
Confidence 58999999999 75 89999999999999999999999999 888764
No 489
>PF13173 AAA_14: AAA domain
Probab=98.06 E-value=1.3e-05 Score=61.46 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD 110 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 110 (240)
+++++|.||-|+||||++ +.+..-.....++..++- .+.. .......+ +...+......++.
T Consensus 2 ~~~~~l~G~R~vGKTtll-~~~~~~~~~~~~~~yi~~-------------~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL-KQLAKDLLPPENILYINF-------------DDPR-DRRLADPD---LLEYFLELIKPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhcccccceeecc-------------CCHH-HHHHhhhh---hHHHHHHhhccCCc
Confidence 578999999999999999 655532222222222211 0000 00000000 11111111113678
Q ss_pred EEEEcCccChHHHHHHHHHHHhcC-CCEEEEEecChhhh
Q 026304 111 VIGIDEAQFFEDLYEFCCNAADHD-GKTVVVAGLDGDYL 148 (240)
Q Consensus 111 lllLDEP~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~~~ 148 (240)
++++||.+......+.++.+.+.. +..|++++......
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 999999988777778888887743 47888888876544
No 490
>PRK08181 transposase; Validated
Probab=98.04 E-value=1.6e-05 Score=68.91 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=71.2
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY 106 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (240)
+.+++-+.|+||.|+|||.|+ ..|.... -.|..+...+....... + .....-........ .+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~g~~v~f~~~~~L~~~----l-------~~a~~~~~~~~~l~-----~l 165 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLA-AAIGLALIENGWRVLFTRTTDLVQK----L-------QVARRELQLESAIA-----KL 165 (269)
T ss_pred HhcCceEEEEecCCCcHHHHH-HHHHHHHHHcCCceeeeeHHHHHHH----H-------HHHHhCCcHHHHHH-----HH
Confidence 457888999999999999999 8776532 23544433321110000 0 00000000001111 25
Q ss_pred ccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCC
Q 026304 107 AKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGK 177 (240)
Q Consensus 107 ~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~ 177 (240)
.++++|++||... ...+.+++....+ .+.+||.+-..+....+.|+....-.++.||++.....+...|.
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~ 242 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE 242 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCc
Confidence 6899999999943 2357777766544 34444444445555655554443335566777653334444553
No 491
>PRK06893 DNA replication initiation factor; Validated
Probab=98.04 E-value=2.2e-05 Score=66.40 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD 110 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 110 (240)
-.+.|.||.|+|||+|+ +.++.... .+..+..++... ...+. ..+.. .+.+++
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~y~~~~~-------------~~~~~-------~~~~~-----~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLNQRTAIYIPLSK-------------SQYFS-------PAVLE-----NLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEeeHHH-------------hhhhh-------HHHHh-----hcccCC
Confidence 46789999999999999 98876422 232222221100 00000 01111 135789
Q ss_pred EEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 111 VIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 111 lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
+|++||+.. ...+.+++.+..+ .|.+++++|++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence 999999966 2357777777765 577777666654
No 492
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.04 E-value=1.3e-05 Score=67.15 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.9
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRI 52 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i 52 (240)
--+++|+++.|.||+|+|||||++.++
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHH
Confidence 358899999999999999999993433
No 493
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.03 E-value=3.5e-05 Score=66.57 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=58.0
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhcccCC-CeEEEccCceecceecCcchhHHHhhchhh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALPELTSFRQKLGDDA 105 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l 105 (240)
+..+..+.|.||.||||||++ +.+....... ..+..+.......... .....+ ...+...+...+...+
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~--------~~~~~~~~~~~l~~~L 194 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQ--------TRRDEISYEDLLKSAL 194 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEE--------EETTTBSHHHHHHHHT
T ss_pred cccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccceeecccceEEEE--------eecCcccHHHHHHHHh
Confidence 556899999999999999999 8887653333 4444332211111110 011110 0023333333344445
Q ss_pred hccCcEEEEcCccChHHHHHHHHHHHhcCCCEE-EEEecChh
Q 026304 106 YAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTV-VVAGLDGD 146 (240)
Q Consensus 106 ~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~ 146 (240)
=++|++++++|-... +..+.+ +.+. .|..+ +.+.|-.+
T Consensus 195 R~~pD~iiigEiR~~-e~~~~~-~a~~-tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 195 RQDPDVIIIGEIRDP-EAAEAI-QAAN-TGHLGSLTTLHANS 233 (270)
T ss_dssp TS--SEEEESCE-SC-HHHHHH-HHHH-TT-EEEEEEEE-SS
T ss_pred cCCCCcccccccCCH-hHHHHH-Hhhc-cCCceeeeeeecCC
Confidence 579999999999664 444553 4444 68888 77777543
No 494
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.02 E-value=6.1e-05 Score=57.05 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 026304 34 HVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 34 ~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.|.||.|+||||++ +.++..
T Consensus 1 ill~G~~G~GKT~l~-~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA-RALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHH-HHHHHH
T ss_pred CEEECcCCCCeeHHH-HHHHhh
Confidence 478999999999999 988753
No 495
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.02 E-value=2e-05 Score=74.23 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=79.4
Q ss_pred cceeEee--ecCCC-CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----c---ccCCC-----
Q 026304 14 NQVNSGR--DRVGL-PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----T---RYAID----- 76 (240)
Q Consensus 14 ~~ls~~~--l~~vs-l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~---~~~~~----- 76 (240)
+.++.+. |+.+- --+++|.++.|.|++|+|||||.++.+...... |..+..+.-... . ..+..
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~ 90 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLI 90 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 3444444 55553 369999999999999999999995555432223 655544432110 0 01100
Q ss_pred ---eEEEccCceec-ce---ecCcchhHHHhhchh-hhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCE
Q 026304 77 ---SVVTHDGAKLP-CW---ALPELTSFRQKLGDD-AYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKT 137 (240)
Q Consensus 77 ---~~v~q~~~~~~-~~---~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~t 137 (240)
.+...+....+ .. .-.+...+...+... .-.+|+.+++|=-+. +..+.++++.+.+ .|.|
T Consensus 91 ~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~-~g~T 169 (509)
T PRK09302 91 DEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQ-KGVT 169 (509)
T ss_pred hCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHh-CCCE
Confidence 01110000000 00 000111122222111 135789999995532 2345666666665 7999
Q ss_pred EEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 138 VVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 138 vi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+++++|+...... .........+||.|+.|+.
T Consensus 170 vLlt~~~~~~~~~-~~~~~~~~~laDgVI~L~~ 201 (509)
T PRK09302 170 AVITGERGDEYGP-LTRYGVEEFVSDCVIILRN 201 (509)
T ss_pred EEEEECCccCcCC-ccccCceEEEeeEEEEEeE
Confidence 9999998652100 0000011458999999875
No 496
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=1.5e-05 Score=81.10 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=46.7
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|++||+|||+. ...+++.|.++.. .|.+|+++||++++. ..+||+|.+++.
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~----------~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR----------ERIPHRILVKKT 1035 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH----------HhhCCEEEEEEC
Confidence 799999999977 4578899999986 799999999999999 999999999864
No 497
>PRK06526 transposase; Provisional
Probab=97.98 E-value=2.1e-05 Score=67.73 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=66.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
..++-+.|+||.|+|||+|+ ..|... .-.|..+........ +.+. ..... .+ .+...+ ..+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa-~al~~~a~~~g~~v~f~t~~~l--------~~~l---~~~~~-~~--~~~~~l--~~l~ 158 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLA-IGLGIRACQAGHRVLFATAAQW--------VARL---AAAHH-AG--RLQAEL--VKLG 158 (254)
T ss_pred hcCceEEEEeCCCCchHHHH-HHHHHHHHHCCCchhhhhHHHH--------HHHH---HHHHh-cC--cHHHHH--HHhc
Confidence 56788999999999999999 777542 223443322211100 0000 00000 00 000111 1246
Q ss_pred cCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEec-ChhhhhcccchHHHHHhhccceeeecceeeccC
Q 026304 108 KLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGL-DGDYLRRSFGSVLDIIPLADTVTKLTARCELCG 176 (240)
Q Consensus 108 ~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtH-d~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g 176 (240)
++++|++||... ...+.+++....+ .+ .+|++|+ ..+...+.|+.-..-.++.||++.....+...|
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~-s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g 233 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RA-SLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKG 233 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-cC-CEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecC
Confidence 799999999843 2235566654443 34 4555555 445555666654444566677765433444444
No 498
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.97 E-value=7e-05 Score=62.91 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=72.2
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----c---ccCCC--------eEEEccCcee-cc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----T---RYAID--------SVVTHDGAKL-PC 88 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~---~~~~~--------~~v~q~~~~~-~~ 88 (240)
-+++|.++.|.||+|+|||+|.++.+.....+ |..+..+.-... . .++.. .+.+.+.... ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 47899999999999999999986666544444 666655532211 0 01100 0111110000 00
Q ss_pred eecCcchhHHHhhchh-hhccCcEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304 89 WALPELTSFRQKLGDD-AYAKLDVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD 157 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~ 157 (240)
....+...+...+... --.+|+.+++|--+. +..+..+...+++ .|.|+++++|-... ..-.....
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~-~~~t~llt~~~~~~--~~~~~~~~ 171 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS-RGVTTLLTSEMPSG--SEDDGTFG 171 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-TTEEEEEEEEESSS--SSSSSSTS
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEEccccC--cccccccc
Confidence 0011112222222221 124779999996533 2234445555554 78998988882110 00111222
Q ss_pred HHh-hccceeeecc
Q 026304 158 IIP-LADTVTKLTA 170 (240)
Q Consensus 158 L~~-~ad~i~~l~~ 170 (240)
+.. +||-|+.|+.
T Consensus 172 i~~~l~D~vI~L~~ 185 (226)
T PF06745_consen 172 IEHYLADGVIELRY 185 (226)
T ss_dssp HHHHHSSEEEEEEE
T ss_pred hhhhcccEEEEEEE
Confidence 355 8999999985
No 499
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.97 E-value=0.00011 Score=73.15 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=46.8
Q ss_pred hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
-.+|.++++|||.. ...+.+.++.+++ .|.+++++||+++.+.+. +....+...|+..++|.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s-~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADIDGS-AIAPAIIESCPTRIFLPN 702 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHhcC-chHHHHHHhCCeeEEcCC
Confidence 34899999999955 2357778888876 689999999999877443 334556667776666665
No 500
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.95 E-value=9.5e-05 Score=58.92 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=29.9
Q ss_pred hccCcEEEEcCccC----hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 106 YAKLDVIGIDEAQF----FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 106 ~~~p~lllLDEP~~----~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
...+|++++||.-- ...+.+.+.+..+ .++.+|.+-|.-
T Consensus 98 ~~~aDvIIIDEIGpMElks~~f~~~ve~vl~-~~kpliatlHrr 140 (179)
T COG1618 98 LEEADVIIIDEIGPMELKSKKFREAVEEVLK-SGKPLIATLHRR 140 (179)
T ss_pred hhcCCEEEEecccchhhccHHHHHHHHHHhc-CCCcEEEEEecc
Confidence 45689999999833 3468888888886 678888888854
Done!