Query 026304
Match_columns 240
No_of_seqs 464 out of 2387
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.4E-34 4.7E-39 258.2 10.3 164 7-181 21-251 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-34 6.8E-39 256.8 10.7 162 9-181 3-226 (359)
3 3gfo_A Cobalt import ATP-bindi 100.0 3.5E-34 1.2E-38 247.4 8.1 164 7-181 4-231 (275)
4 3rlf_A Maltose/maltodextrin im 100.0 7.1E-34 2.4E-38 254.9 9.7 157 10-181 3-221 (381)
5 4g1u_C Hemin import ATP-bindin 100.0 8.4E-34 2.9E-38 244.0 8.4 161 8-181 9-235 (266)
6 3tif_A Uncharacterized ABC tra 100.0 9.4E-34 3.2E-38 239.6 8.5 161 10-182 1-233 (235)
7 1ji0_A ABC transporter; ATP bi 100.0 2.2E-33 7.4E-38 238.0 8.6 161 7-180 3-225 (240)
8 1g6h_A High-affinity branched- 100.0 3.9E-33 1.3E-37 238.7 8.7 160 8-180 5-239 (257)
9 2olj_A Amino acid ABC transpor 100.0 5E-33 1.7E-37 238.8 9.1 160 9-181 23-246 (263)
10 1g29_1 MALK, maltose transport 100.0 1.6E-32 5.5E-37 246.1 11.6 157 10-181 3-227 (372)
11 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-32 3.6E-37 235.9 9.8 159 8-181 13-233 (256)
12 2pcj_A ABC transporter, lipopr 100.0 1E-32 3.5E-37 231.6 9.3 156 9-177 3-222 (224)
13 1b0u_A Histidine permease; ABC 100.0 6.7E-33 2.3E-37 237.9 8.3 161 8-181 4-240 (262)
14 2it1_A 362AA long hypothetical 100.0 1.1E-32 3.8E-37 246.2 9.5 157 10-181 3-221 (362)
15 2yyz_A Sugar ABC transporter, 100.0 8.9E-33 3.1E-37 246.5 8.4 157 10-181 3-221 (359)
16 1z47_A CYSA, putative ABC-tran 100.0 1.4E-32 5E-37 244.7 9.2 160 7-181 11-233 (355)
17 1v43_A Sugar-binding transport 100.0 1.5E-32 5.1E-37 246.1 7.9 157 10-181 11-229 (372)
18 3d31_A Sulfate/molybdate ABC t 100.0 3.1E-32 1.1E-36 242.2 8.9 157 10-181 1-215 (348)
19 1oxx_K GLCV, glucose, ABC tran 100.0 5.1E-32 1.7E-36 241.4 9.4 161 10-181 3-228 (353)
20 2onk_A Molybdate/tungstate ABC 100.0 2.7E-32 9.4E-37 231.3 5.0 156 10-181 1-214 (240)
21 2zu0_C Probable ATP-dependent 100.0 5.9E-31 2E-35 226.4 8.2 160 8-180 18-251 (267)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 7.3E-31 2.5E-35 223.7 8.6 157 10-179 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 3.7E-31 1.3E-35 229.0 6.6 160 8-181 19-250 (279)
24 2nq2_C Hypothetical ABC transp 100.0 2.5E-30 8.5E-35 220.9 10.7 153 9-181 3-215 (253)
25 3nh6_A ATP-binding cassette SU 100.0 8.8E-31 3E-35 229.2 7.3 157 9-182 52-276 (306)
26 2ixe_A Antigen peptide transpo 100.0 2.5E-30 8.6E-35 222.9 7.1 158 9-181 15-243 (271)
27 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-30 1.2E-34 219.4 7.5 160 9-181 3-220 (249)
28 1mv5_A LMRA, multidrug resista 100.0 3.3E-30 1.1E-34 218.8 7.2 155 10-181 1-224 (243)
29 1w4r_A Thymidine kinase; type 100.0 1.3E-29 4.4E-34 207.2 10.1 176 29-211 18-193 (195)
30 2ff7_A Alpha-hemolysin translo 100.0 5.4E-30 1.8E-34 218.0 6.9 155 10-181 7-230 (247)
31 2yz2_A Putative ABC transporte 100.0 8.8E-30 3E-34 218.9 7.7 155 10-181 2-225 (266)
32 1sgw_A Putative ABC transporte 100.0 8.7E-30 3E-34 212.4 6.3 145 9-172 9-210 (214)
33 2ghi_A Transport protein; mult 100.0 2.3E-29 7.9E-34 215.6 7.3 156 9-181 16-240 (260)
34 3e2i_A Thymidine kinase; Zn-bi 100.0 3E-28 1E-32 201.7 13.5 179 29-212 26-211 (219)
35 3gd7_A Fusion complex of cysti 100.0 3E-29 1E-33 226.0 4.9 156 9-181 18-240 (390)
36 2pze_A Cystic fibrosis transme 99.9 1.1E-28 3.7E-33 207.7 5.7 151 8-181 4-216 (229)
37 2j9r_A Thymidine kinase; TK1, 99.9 1.9E-27 6.6E-32 197.1 12.8 179 28-211 25-210 (214)
38 1xx6_A Thymidine kinase; NESG, 99.9 1.2E-26 3.9E-31 190.2 15.7 177 29-210 6-189 (191)
39 2cbz_A Multidrug resistance-as 99.9 3.5E-28 1.2E-32 205.6 6.5 149 10-181 3-215 (237)
40 2orv_A Thymidine kinase; TP4A 99.9 4.1E-27 1.4E-31 196.8 12.9 178 28-212 16-193 (234)
41 2pjz_A Hypothetical protein ST 99.9 1.2E-27 4.2E-32 205.2 8.4 154 10-181 1-213 (263)
42 3qf4_A ABC transporter, ATP-bi 99.9 9.8E-28 3.4E-32 226.8 6.0 157 9-182 340-565 (587)
43 4a82_A Cystic fibrosis transme 99.9 9.6E-28 3.3E-32 226.5 5.6 155 10-181 339-562 (578)
44 3b5x_A Lipid A export ATP-bind 99.9 3.8E-27 1.3E-31 222.6 9.6 156 9-181 340-565 (582)
45 3qf4_B Uncharacterized ABC tra 99.9 1.6E-27 5.3E-32 225.9 6.2 156 10-182 354-577 (598)
46 3b60_A Lipid A export ATP-bind 99.9 3.8E-27 1.3E-31 222.6 7.4 156 9-181 340-565 (582)
47 2yl4_A ATP-binding cassette SU 99.9 8.1E-27 2.8E-31 220.9 7.6 155 11-182 342-569 (595)
48 2bbs_A Cystic fibrosis transme 99.9 6.6E-27 2.3E-31 203.3 4.5 150 9-181 39-245 (290)
49 2b8t_A Thymidine kinase; deoxy 99.9 3.1E-25 1E-29 185.8 13.4 182 29-212 10-199 (223)
50 1yqt_A RNAse L inhibitor; ATP- 99.9 1.6E-25 5.4E-30 209.7 12.1 154 8-181 285-491 (538)
51 3bk7_A ABC transporter ATP-bin 99.9 2.1E-25 7.2E-30 211.3 12.3 154 8-181 355-561 (607)
52 2orw_A Thymidine kinase; TMTK, 99.9 4E-25 1.4E-29 180.0 12.0 176 30-210 2-179 (184)
53 3ozx_A RNAse L inhibitor; ATP 99.9 1.9E-24 6.5E-29 202.2 12.7 144 8-170 267-461 (538)
54 3g5u_A MCG1178, multidrug resi 99.9 4.1E-25 1.4E-29 224.5 6.7 155 10-181 387-611 (1284)
55 4f4c_A Multidrug resistance pr 99.9 2.4E-25 8.3E-30 226.7 4.0 157 10-183 1076-1304(1321)
56 3g5u_A MCG1178, multidrug resi 99.9 5.7E-25 2E-29 223.4 6.5 156 10-182 1030-1257(1284)
57 4f4c_A Multidrug resistance pr 99.9 9E-25 3.1E-29 222.5 6.7 155 10-181 415-639 (1321)
58 3bk7_A ABC transporter ATP-bin 99.9 1.2E-23 4.1E-28 199.2 9.7 148 10-170 83-303 (607)
59 3j16_B RLI1P; ribosome recycli 99.9 1.3E-23 4.5E-28 198.8 9.4 148 14-181 350-557 (608)
60 1yqt_A RNAse L inhibitor; ATP- 99.9 2.7E-23 9.2E-28 194.5 11.4 147 11-170 21-233 (538)
61 2iw3_A Elongation factor 3A; a 99.9 8.8E-23 3E-27 200.7 9.1 147 10-179 435-631 (986)
62 2iw3_A Elongation factor 3A; a 99.9 6.9E-22 2.4E-26 194.4 9.1 47 8-55 669-722 (986)
63 3ux8_A Excinuclease ABC, A sub 99.9 6.7E-22 2.3E-26 189.5 8.8 64 105-180 217-295 (670)
64 3j16_B RLI1P; ribosome recycli 99.8 2.4E-21 8.1E-26 183.4 10.0 56 104-170 235-296 (608)
65 3ux8_A Excinuclease ABC, A sub 99.8 1.2E-21 4.2E-26 187.7 5.9 65 105-181 558-638 (670)
66 3ozx_A RNAse L inhibitor; ATP 99.8 1E-20 3.4E-25 177.0 10.6 55 104-170 152-212 (538)
67 1znw_A Guanylate kinase, GMP k 99.8 1.6E-21 5.3E-26 160.9 -0.1 134 21-169 12-202 (207)
68 2npi_A Protein CLP1; CLP1-PCF1 99.8 1.3E-21 4.4E-26 179.8 -4.9 156 8-180 116-335 (460)
69 4gp7_A Metallophosphoesterase; 99.8 4.8E-21 1.7E-25 153.6 -1.1 120 23-148 1-162 (171)
70 3pih_A Uvrabc system protein A 99.8 4.6E-19 1.6E-23 173.9 10.9 63 108-182 826-901 (916)
71 2ehv_A Hypothetical protein PH 99.8 1.5E-19 5E-24 151.7 6.0 158 10-170 6-207 (251)
72 2ygr_A Uvrabc system protein A 99.8 1.1E-19 3.8E-24 178.4 5.2 65 105-181 878-958 (993)
73 2vf7_A UVRA2, excinuclease ABC 99.8 2.9E-19 1E-23 174.0 8.0 65 105-181 745-825 (842)
74 2r6f_A Excinuclease ABC subuni 99.8 6.7E-20 2.3E-24 179.4 3.2 65 105-181 860-940 (972)
75 2eyu_A Twitching motility prot 99.8 1.3E-18 4.4E-23 148.9 8.5 138 10-169 5-146 (261)
76 4aby_A DNA repair protein RECN 99.8 4.8E-19 1.6E-23 160.0 6.1 53 104-169 309-369 (415)
77 3b85_A Phosphate starvation-in 99.7 6E-19 2.1E-23 146.1 3.3 117 28-148 19-161 (208)
78 4a74_A DNA repair and recombin 99.7 2.3E-19 8E-24 148.6 -1.1 151 10-170 1-199 (231)
79 1tf7_A KAIC; homohexamer, hexa 99.7 1.8E-18 6.1E-23 161.4 4.0 159 9-170 11-209 (525)
80 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.1E-18 7.2E-23 152.3 4.1 125 21-170 161-289 (330)
81 2o8b_B DNA mismatch repair pro 99.7 5.7E-18 1.9E-22 168.3 7.1 146 8-178 748-937 (1022)
82 3jvv_A Twitching mobility prot 99.7 5.7E-17 2E-21 144.4 9.5 129 21-169 106-244 (356)
83 3thx_A DNA mismatch repair pro 99.7 3.3E-17 1.1E-21 161.3 6.9 144 21-182 652-812 (934)
84 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2.9E-16 9.8E-21 140.3 11.3 55 107-173 302-363 (365)
85 3b9q_A Chloroplast SRP recepto 99.6 3.4E-16 1.2E-20 136.5 9.4 146 22-170 91-281 (302)
86 1wb9_A DNA mismatch repair pro 99.6 4E-17 1.4E-21 158.7 3.8 135 21-175 598-750 (800)
87 1ye8_A Protein THEP1, hypothet 99.6 5E-16 1.7E-20 125.4 9.7 119 33-164 2-152 (178)
88 1cr0_A DNA primase/helicase; R 99.6 3.9E-17 1.3E-21 141.3 2.8 159 13-172 14-237 (296)
89 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.8E-16 9.6E-21 129.8 7.0 147 21-170 12-191 (235)
90 2og2_A Putative signal recogni 99.6 2.1E-15 7.2E-20 134.3 9.9 146 22-170 148-338 (359)
91 3thx_B DNA mismatch repair pro 99.6 3.8E-16 1.3E-20 153.5 5.3 120 21-148 663-799 (918)
92 3szr_A Interferon-induced GTP- 99.6 3E-15 1E-19 141.9 8.1 165 8-179 8-233 (608)
93 1z6g_A Guanylate kinase; struc 99.6 1.2E-16 4.2E-21 132.8 -2.2 35 21-56 13-47 (218)
94 1e69_A Chromosome segregation 99.5 7.1E-15 2.4E-19 129.0 8.1 50 107-169 240-297 (322)
95 1tq4_A IIGP1, interferon-induc 99.5 2E-16 6.8E-21 143.3 -2.3 129 21-166 39-248 (413)
96 2ewv_A Twitching motility prot 99.5 1.4E-14 4.8E-19 129.7 8.7 122 28-169 133-257 (372)
97 1ewq_A DNA mismatch repair pro 99.5 2.2E-15 7.4E-20 145.9 3.4 113 21-148 569-701 (765)
98 1tf7_A KAIC; homohexamer, hexa 99.5 1.9E-14 6.4E-19 134.2 7.8 148 10-170 257-442 (525)
99 2dpy_A FLII, flagellum-specifi 99.5 6.3E-16 2.2E-20 141.2 -2.8 157 8-180 129-341 (438)
100 3qkt_A DNA double-strand break 99.5 2.3E-13 7.7E-18 120.2 11.0 52 106-169 270-327 (339)
101 2cvh_A DNA repair and recombin 99.4 6.2E-14 2.1E-18 115.0 4.7 145 21-170 9-184 (220)
102 2v9p_A Replication protein E1; 99.4 1.9E-15 6.3E-20 131.9 -4.9 52 10-63 101-156 (305)
103 2jeo_A Uridine-cytidine kinase 99.4 8.2E-14 2.8E-18 117.4 5.3 34 21-55 15-48 (245)
104 1pzn_A RAD51, DNA repair and r 99.4 5.4E-14 1.9E-18 124.8 4.2 132 14-148 111-289 (349)
105 2gza_A Type IV secretion syste 99.4 2.9E-14 9.8E-19 127.2 1.9 129 22-170 166-301 (361)
106 3aez_A Pantothenate kinase; tr 99.4 7.7E-15 2.6E-19 128.5 -2.3 46 10-56 43-114 (312)
107 2i3b_A HCR-ntpase, human cance 99.4 1.5E-13 5E-18 112.0 4.9 114 31-146 1-150 (189)
108 1s96_A Guanylate kinase, GMP k 99.4 4.7E-14 1.6E-18 117.5 1.7 117 25-148 10-143 (219)
109 1n0w_A DNA repair protein RAD5 99.4 3.1E-13 1.1E-17 112.5 5.8 144 26-170 19-208 (243)
110 3ec2_A DNA replication protein 99.4 9.2E-13 3.1E-17 105.4 8.2 104 25-146 32-144 (180)
111 2qag_B Septin-6, protein NEDD5 99.4 4.3E-14 1.5E-18 128.2 -0.3 79 10-92 16-100 (427)
112 2kjq_A DNAA-related protein; s 99.4 1.4E-12 4.8E-17 102.1 8.2 84 30-145 35-125 (149)
113 1rj9_A FTSY, signal recognitio 99.4 5.8E-13 2E-17 116.1 6.5 115 30-147 101-260 (304)
114 2qag_C Septin-7; cell cycle, c 99.4 2.7E-13 9.2E-18 123.0 4.5 128 9-148 10-180 (418)
115 2obl_A ESCN; ATPase, hydrolase 99.4 3.3E-14 1.1E-18 126.2 -1.8 46 8-55 43-94 (347)
116 1htw_A HI0065; nucleotide-bind 99.3 4.2E-14 1.5E-18 112.0 -2.1 83 12-96 9-96 (158)
117 2dr3_A UPF0273 protein PH0284; 99.3 2.6E-12 8.9E-17 107.0 6.8 148 21-170 12-196 (247)
118 2yhs_A FTSY, cell division pro 99.3 1.3E-11 4.4E-16 113.7 10.3 126 21-148 283-451 (503)
119 1nlf_A Regulatory protein REPA 99.2 7.6E-12 2.6E-16 107.2 6.7 44 105-148 130-184 (279)
120 3sop_A Neuronal-specific septi 99.2 5.7E-12 2E-16 108.0 5.7 108 33-148 4-153 (270)
121 2qnr_A Septin-2, protein NEDD5 99.2 4.9E-12 1.7E-16 110.0 5.3 127 14-147 2-169 (301)
122 3asz_A Uridine kinase; cytidin 99.2 5.6E-13 1.9E-17 109.1 -2.7 27 28-55 3-29 (211)
123 3e70_C DPA, signal recognition 99.2 4E-11 1.4E-15 105.5 8.1 116 28-146 126-280 (328)
124 3lda_A DNA repair protein RAD5 99.2 8.8E-12 3E-16 112.5 3.9 144 26-170 173-362 (400)
125 1lw7_A Transcriptional regulat 99.2 4.1E-12 1.4E-16 113.1 1.0 144 21-181 158-353 (365)
126 2zr9_A Protein RECA, recombina 99.1 1.3E-10 4.3E-15 103.1 8.1 148 26-177 56-237 (349)
127 2bdt_A BH3686; alpha-beta prot 99.1 1.1E-11 3.9E-16 99.7 1.0 47 120-180 133-181 (189)
128 3tr0_A Guanylate kinase, GMP k 98.9 2.1E-10 7.3E-15 92.9 0.7 30 25-55 1-30 (205)
129 1sxj_E Activator 1 40 kDa subu 98.9 1.9E-09 6.5E-14 94.6 6.7 41 106-148 132-177 (354)
130 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 3.1E-09 1.1E-13 83.0 6.6 55 103-169 76-136 (148)
131 3lnc_A Guanylate kinase, GMP k 98.8 7.3E-10 2.5E-14 92.0 2.0 34 21-55 17-51 (231)
132 1sq5_A Pantothenate kinase; P- 98.8 1.4E-10 4.6E-15 101.1 -2.8 46 9-55 36-103 (308)
133 3hr8_A Protein RECA; alpha and 98.8 1.3E-08 4.4E-13 90.3 9.5 141 27-170 57-229 (356)
134 2oap_1 GSPE-2, type II secreti 98.8 8.6E-09 2.9E-13 95.7 8.4 114 21-144 250-366 (511)
135 2r6a_A DNAB helicase, replicat 98.8 2.8E-09 9.6E-14 97.5 4.8 151 15-170 185-398 (454)
136 3euj_A Chromosome partition pr 98.8 1.3E-09 4.3E-14 100.4 2.0 33 21-55 20-52 (483)
137 1pui_A ENGB, probable GTP-bind 98.8 1.8E-09 6.1E-14 87.5 2.6 44 10-56 3-50 (210)
138 3pih_A Uvrabc system protein A 98.8 6.5E-09 2.2E-13 102.2 6.3 64 105-180 479-557 (916)
139 2qm8_A GTPase/ATPase; G protei 98.7 5.3E-10 1.8E-14 98.6 -2.1 109 10-119 29-158 (337)
140 3nwj_A ATSK2; P loop, shikimat 98.7 7.9E-10 2.7E-14 93.7 -1.1 46 8-54 15-70 (250)
141 2r6f_A Excinuclease ABC subuni 98.7 1.7E-08 5.8E-13 99.3 7.2 65 105-181 519-598 (972)
142 2ygr_A Uvrabc system protein A 98.7 2E-08 7E-13 99.0 6.5 64 105-180 536-614 (993)
143 2vf7_A UVRA2, excinuclease ABC 98.7 3.2E-08 1.1E-12 96.6 7.4 65 105-181 394-473 (842)
144 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 1.6E-09 5.4E-14 97.4 -2.0 28 27-55 16-43 (392)
145 3kta_A Chromosome segregation 98.6 1.1E-08 3.7E-13 81.5 3.0 32 22-55 18-49 (182)
146 1p9r_A General secretion pathw 98.6 8.3E-08 2.8E-12 86.9 8.3 123 10-145 143-271 (418)
147 1u0l_A Probable GTPase ENGC; p 98.6 1.5E-08 5E-13 87.9 2.5 56 26-84 164-230 (301)
148 1vma_A Cell division protein F 98.6 1.5E-07 5.1E-12 81.9 8.9 42 23-65 96-138 (306)
149 1nij_A Hypothetical protein YJ 98.6 3.8E-09 1.3E-13 92.3 -1.4 24 31-55 4-27 (318)
150 1zp6_A Hypothetical protein AT 98.6 3.1E-08 1.1E-12 79.2 3.7 28 27-55 5-32 (191)
151 2px0_A Flagellar biosynthesis 98.5 4.5E-08 1.5E-12 84.8 4.1 127 29-170 103-241 (296)
152 3c8u_A Fructokinase; YP_612366 98.5 3.9E-08 1.4E-12 80.3 2.8 28 28-56 19-46 (208)
153 2ce7_A Cell division protein F 98.5 1.6E-07 5.6E-12 86.3 7.1 108 21-148 41-167 (476)
154 1zu4_A FTSY; GTPase, signal re 98.5 3.7E-07 1.3E-11 79.8 8.6 43 22-65 96-139 (320)
155 1lvg_A Guanylate kinase, GMP k 98.5 3.6E-08 1.2E-12 80.1 1.8 27 29-56 2-28 (198)
156 2j41_A Guanylate kinase; GMP, 98.4 6.9E-08 2.4E-12 77.9 2.8 30 26-56 1-30 (207)
157 1v5w_A DMC1, meiotic recombina 98.4 2.9E-07 9.8E-12 81.2 7.0 144 26-170 117-308 (343)
158 3vaa_A Shikimate kinase, SK; s 98.4 7.1E-08 2.4E-12 78.1 2.8 33 21-54 15-47 (199)
159 1t9h_A YLOQ, probable GTPase E 98.4 6.9E-08 2.4E-12 84.0 2.0 29 26-55 168-196 (307)
160 1u94_A RECA protein, recombina 98.4 7E-07 2.4E-11 79.2 8.1 145 27-176 59-238 (356)
161 3a00_A Guanylate kinase, GMP k 98.4 8.1E-08 2.8E-12 77.0 1.8 25 31-56 1-25 (186)
162 1ls1_A Signal recognition part 98.4 9.3E-07 3.2E-11 76.3 8.6 51 12-65 78-132 (295)
163 2o5v_A DNA replication and rep 98.4 1.2E-07 4E-12 84.3 2.4 57 107-181 291-354 (359)
164 3uie_A Adenylyl-sulfate kinase 98.4 6.6E-08 2.2E-12 78.4 0.7 35 21-56 15-49 (200)
165 2yv5_A YJEQ protein; hydrolase 98.4 1.9E-07 6.4E-12 81.0 3.5 62 26-91 160-237 (302)
166 4ad8_A DNA repair protein RECN 98.3 6.5E-07 2.2E-11 83.0 7.3 55 103-170 410-472 (517)
167 1qhl_A Protein (cell division 98.3 1E-08 3.4E-13 85.6 -5.0 46 6-55 5-50 (227)
168 2z43_A DNA repair and recombin 98.3 5.7E-07 2E-11 78.5 5.9 144 26-170 102-289 (324)
169 1kgd_A CASK, peripheral plasma 98.3 2.2E-07 7.6E-12 74.1 2.7 25 30-55 4-28 (180)
170 2z4s_A Chromosomal replication 98.3 1.4E-06 4.7E-11 79.3 8.0 97 31-145 130-237 (440)
171 4eun_A Thermoresistant glucoki 98.3 2.9E-07 1E-11 74.5 2.8 30 26-56 24-53 (200)
172 2vp4_A Deoxynucleoside kinase; 98.2 4.9E-07 1.7E-11 74.9 3.5 34 21-55 10-43 (230)
173 1fnn_A CDC6P, cell division co 98.2 1.2E-06 4.2E-11 77.0 5.5 25 30-55 41-67 (389)
174 1xp8_A RECA protein, recombina 98.2 3.5E-06 1.2E-10 75.0 8.2 139 27-170 70-242 (366)
175 2x8a_A Nuclear valosin-contain 98.2 4.1E-07 1.4E-11 77.7 2.1 32 21-55 36-67 (274)
176 3tau_A Guanylate kinase, GMP k 98.2 7.1E-07 2.4E-11 72.8 2.9 26 29-55 6-31 (208)
177 1svm_A Large T antigen; AAA+ f 98.2 2.8E-07 9.7E-12 82.3 0.4 37 21-59 159-195 (377)
178 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.2E-06 4E-11 68.1 3.5 32 21-54 14-45 (149)
179 1ypw_A Transitional endoplasmi 98.1 1.9E-06 6.5E-11 84.1 5.8 30 25-55 232-261 (806)
180 1w1w_A Structural maintenance 98.1 4.8E-07 1.6E-11 81.9 1.4 52 107-170 354-411 (430)
181 1lv7_A FTSH; alpha/beta domain 98.1 5.8E-06 2E-10 69.2 7.7 32 21-55 37-68 (257)
182 2bbw_A Adenylate kinase 4, AK4 98.1 1.2E-06 4.2E-11 73.1 3.3 25 30-55 26-53 (246)
183 2qby_A CDC6 homolog 1, cell di 98.1 1.4E-06 4.9E-11 76.2 3.7 26 29-55 43-68 (386)
184 1knq_A Gluconate kinase; ALFA/ 98.1 1.3E-06 4.6E-11 68.7 3.2 26 29-55 6-31 (175)
185 2dy1_A Elongation factor G; tr 98.1 9.8E-06 3.4E-10 77.4 9.7 119 25-148 3-139 (665)
186 1ixz_A ATP-dependent metallopr 98.1 8.7E-07 3E-11 74.1 2.1 43 11-56 26-73 (254)
187 3bos_A Putative DNA replicatio 98.1 1.8E-05 6.2E-10 64.5 9.7 89 30-145 51-148 (242)
188 4e22_A Cytidylate kinase; P-lo 98.1 1.6E-06 5.5E-11 72.9 3.3 26 29-55 25-53 (252)
189 3kta_B Chromosome segregation 98.1 5.7E-06 2E-10 66.0 6.3 50 107-169 85-140 (173)
190 1iy2_A ATP-dependent metallopr 98.1 1.1E-06 3.8E-11 74.7 2.1 33 21-56 65-97 (278)
191 2ius_A DNA translocase FTSK; n 98.1 3.4E-06 1.1E-10 78.1 5.4 32 22-54 158-189 (512)
192 4a1f_A DNAB helicase, replicat 98.0 1E-06 3.5E-11 77.6 1.7 128 14-143 27-164 (338)
193 1udx_A The GTP-binding protein 98.0 7E-07 2.4E-11 80.8 0.5 34 21-55 147-180 (416)
194 3b9p_A CG5977-PA, isoform A; A 98.0 3E-05 1E-09 66.0 10.7 25 30-55 53-77 (297)
195 3auy_A DNA double-strand break 98.0 7.6E-06 2.6E-10 72.6 6.9 53 105-170 301-360 (371)
196 1in4_A RUVB, holliday junction 98.0 1.7E-07 5.7E-12 82.2 -4.1 46 10-56 18-75 (334)
197 2i1q_A DNA repair and recombin 98.0 5.8E-06 2E-10 71.8 5.8 64 107-170 203-290 (322)
198 2zts_A Putative uncharacterize 98.0 1.7E-05 5.9E-10 65.3 8.3 65 106-170 133-207 (251)
199 2w58_A DNAI, primosome compone 98.0 6.9E-06 2.4E-10 66.0 5.8 23 32-55 55-77 (202)
200 1kag_A SKI, shikimate kinase I 98.0 1.8E-06 6.1E-11 67.7 2.2 25 30-55 3-27 (173)
201 3ney_A 55 kDa erythrocyte memb 98.0 2.2E-06 7.5E-11 69.8 2.8 30 25-55 13-42 (197)
202 1rz3_A Hypothetical protein rb 98.0 2.9E-06 9.9E-11 68.7 3.5 28 27-55 18-45 (201)
203 2xau_A PRE-mRNA-splicing facto 98.0 2.6E-06 8.9E-11 82.7 3.7 26 28-54 106-131 (773)
204 2qt1_A Nicotinamide riboside k 98.0 3.3E-06 1.1E-10 68.4 3.7 32 23-55 13-44 (207)
205 1l8q_A Chromosomal replication 98.0 9.1E-06 3.1E-10 70.4 6.7 97 30-144 36-140 (324)
206 3io5_A Recombination and repai 98.0 7.8E-06 2.7E-10 71.3 6.2 126 27-154 25-180 (333)
207 2rcn_A Probable GTPase ENGC; Y 98.0 2.5E-06 8.5E-11 75.7 3.1 34 21-56 206-239 (358)
208 3k1j_A LON protease, ATP-depen 98.0 3E-06 1E-10 80.0 3.8 34 21-55 50-83 (604)
209 3cf0_A Transitional endoplasmi 98.0 4.7E-06 1.6E-10 71.8 4.6 29 26-55 44-72 (301)
210 3bh0_A DNAB-like replicative h 97.9 5.4E-06 1.9E-10 72.1 4.4 121 21-144 58-190 (315)
211 2q6t_A DNAB replication FORK h 97.9 3.5E-05 1.2E-09 70.0 9.6 147 21-170 190-397 (444)
212 3tqc_A Pantothenate kinase; bi 97.9 1.2E-06 4E-11 76.7 -0.3 35 21-56 76-116 (321)
213 3qks_A DNA double-strand break 97.9 6.5E-06 2.2E-10 67.0 3.5 32 21-54 14-45 (203)
214 3h4m_A Proteasome-activating n 97.9 3.1E-05 1.1E-09 65.5 7.5 26 28-54 48-73 (285)
215 3cmw_A Protein RECA, recombina 97.9 1.7E-05 5.8E-10 82.3 6.8 141 27-170 728-900 (1706)
216 1w1w_A Structural maintenance 97.8 1.9E-05 6.3E-10 71.4 6.1 43 10-55 6-49 (430)
217 2p67_A LAO/AO transport system 97.8 1.1E-06 3.9E-11 77.2 -2.0 52 11-63 31-88 (341)
218 3cr8_A Sulfate adenylyltranfer 97.8 6.2E-06 2.1E-10 77.1 2.7 30 26-56 364-393 (552)
219 1y63_A LMAJ004144AAA protein; 97.8 8.8E-06 3E-10 64.8 3.2 31 23-54 2-32 (184)
220 4eaq_A DTMP kinase, thymidylat 97.8 1E-05 3.5E-10 67.1 3.6 34 21-55 13-49 (229)
221 3ice_A Transcription terminati 97.8 4.4E-06 1.5E-10 74.7 0.9 45 10-55 133-197 (422)
222 4ad8_A DNA repair protein RECN 97.8 2.9E-06 1E-10 78.6 -0.3 33 21-55 51-83 (517)
223 2f1r_A Molybdopterin-guanine d 97.8 5E-06 1.7E-10 66.1 0.7 23 32-55 3-25 (171)
224 2pez_A Bifunctional 3'-phospho 97.8 1.3E-05 4.5E-10 63.2 3.2 26 29-55 3-28 (179)
225 3auy_A DNA double-strand break 97.7 1.5E-05 5E-10 70.8 3.7 41 11-53 3-46 (371)
226 1jjv_A Dephospho-COA kinase; P 97.7 1.5E-05 5.1E-10 64.3 3.1 21 33-54 4-24 (206)
227 3cmu_A Protein RECA, recombina 97.7 7.1E-05 2.4E-09 78.7 8.6 145 27-176 379-558 (2050)
228 1cke_A CK, MSSA, protein (cyti 97.7 1.5E-05 5E-10 65.2 2.8 24 31-55 5-28 (227)
229 2e87_A Hypothetical protein PH 97.7 0.00015 5.1E-09 63.8 9.2 25 30-55 166-190 (357)
230 3cmw_A Protein RECA, recombina 97.7 5E-05 1.7E-09 78.9 6.7 148 27-176 379-558 (1706)
231 3bgw_A DNAB-like replicative h 97.7 0.00011 3.9E-09 66.8 8.4 150 21-170 187-394 (444)
232 2qor_A Guanylate kinase; phosp 97.7 1.8E-05 6.2E-10 64.0 2.6 27 27-54 8-34 (204)
233 2o5v_A DNA replication and rep 97.6 5.6E-05 1.9E-09 67.0 5.9 41 12-54 5-48 (359)
234 1oix_A RAS-related protein RAB 97.6 1.9E-05 6.6E-10 62.9 2.6 23 33-56 31-53 (191)
235 2if2_A Dephospho-COA kinase; a 97.6 2.1E-05 7.3E-10 63.2 2.6 21 33-54 3-23 (204)
236 2f9l_A RAB11B, member RAS onco 97.6 2.6E-05 8.9E-10 62.4 2.7 23 33-56 7-29 (199)
237 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00022 7.5E-09 59.2 8.1 25 29-54 37-61 (262)
238 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00066 2.2E-08 58.9 11.2 26 28-54 42-67 (322)
239 2yvu_A Probable adenylyl-sulfa 97.5 5E-05 1.7E-09 60.3 3.5 37 26-63 8-45 (186)
240 3kl4_A SRP54, signal recogniti 97.5 3.3E-05 1.1E-09 70.1 2.7 35 30-65 96-131 (433)
241 2r8r_A Sensor protein; KDPD, P 97.5 3.7E-05 1.3E-09 63.8 2.5 108 29-143 3-125 (228)
242 1odf_A YGR205W, hypothetical 3 97.5 4.2E-05 1.4E-09 65.8 3.0 27 28-55 28-54 (290)
243 1m7g_A Adenylylsulfate kinase; 97.5 3.8E-05 1.3E-09 62.4 2.5 29 26-55 20-48 (211)
244 3cm0_A Adenylate kinase; ATP-b 97.5 5.8E-05 2E-09 59.6 3.4 25 29-54 2-26 (186)
245 3m6a_A ATP-dependent protease 97.5 1.2E-05 4.2E-10 75.0 -0.9 34 21-56 99-132 (543)
246 2gj8_A MNME, tRNA modification 97.5 6.4E-05 2.2E-09 58.8 3.3 26 29-55 2-27 (172)
247 2dhr_A FTSH; AAA+ protein, hex 97.5 5E-05 1.7E-09 70.2 3.0 32 21-55 56-87 (499)
248 1ega_A Protein (GTP-binding pr 97.4 6.4E-05 2.2E-09 64.8 3.0 26 29-55 6-31 (301)
249 1jbk_A CLPB protein; beta barr 97.4 0.00033 1.1E-08 54.5 6.8 26 29-55 41-66 (195)
250 1ypw_A Transitional endoplasmi 97.4 1.4E-05 4.8E-10 77.9 -1.7 32 24-56 504-535 (806)
251 2p65_A Hypothetical protein PF 97.4 0.00025 8.7E-09 55.1 5.9 26 29-55 41-66 (187)
252 3t61_A Gluconokinase; PSI-biol 97.4 5.8E-05 2E-09 60.6 2.1 24 31-55 18-41 (202)
253 2www_A Methylmalonic aciduria 97.4 8.4E-05 2.9E-09 65.5 3.2 26 29-55 72-97 (349)
254 1njg_A DNA polymerase III subu 97.4 9.8E-05 3.3E-09 59.6 3.3 22 33-55 47-68 (250)
255 2qgz_A Helicase loader, putati 97.3 0.00026 9E-09 61.2 6.1 32 31-63 152-185 (308)
256 1j8m_F SRP54, signal recogniti 97.3 0.00013 4.4E-09 62.9 4.1 42 22-65 89-132 (297)
257 3d8b_A Fidgetin-like protein 1 97.3 0.0008 2.7E-08 59.2 9.1 25 29-54 115-139 (357)
258 2ga8_A Hypothetical 39.9 kDa p 97.3 2.9E-05 9.9E-10 68.6 -0.3 34 21-55 12-47 (359)
259 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00036 1.2E-08 60.9 6.6 27 26-53 118-144 (331)
260 1sxj_D Activator 1 41 kDa subu 97.3 7.2E-05 2.4E-09 64.9 2.2 22 33-55 60-81 (353)
261 1q3t_A Cytidylate kinase; nucl 97.3 9.5E-05 3.3E-09 61.1 2.8 26 28-54 13-38 (236)
262 1qhx_A CPT, protein (chloramph 97.3 0.00012 4E-09 57.4 3.1 23 31-54 3-25 (178)
263 2ffh_A Protein (FFH); SRP54, s 97.3 0.00019 6.5E-09 65.0 4.9 41 22-65 91-132 (425)
264 3t34_A Dynamin-related protein 97.3 0.00011 3.7E-09 64.8 3.2 31 21-55 27-57 (360)
265 2wji_A Ferrous iron transport 97.3 0.00013 4.3E-09 56.5 3.1 23 32-55 4-26 (165)
266 1f6b_A SAR1; gtpases, N-termin 97.3 6.8E-05 2.3E-09 60.0 1.6 33 21-55 16-48 (198)
267 1g5t_A COB(I)alamin adenosyltr 97.3 0.0012 4E-08 53.5 8.7 53 107-170 119-179 (196)
268 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.4E-09 56.5 3.0 21 33-54 3-23 (173)
269 3eie_A Vacuolar protein sortin 97.3 0.00065 2.2E-08 58.7 7.7 25 29-54 49-73 (322)
270 2rhm_A Putative kinase; P-loop 97.2 0.00017 5.8E-09 57.0 3.5 25 29-54 3-27 (193)
271 2p5t_B PEZT; postsegregational 97.2 0.00013 4.4E-09 61.1 2.7 32 21-54 23-54 (253)
272 2zan_A Vacuolar protein sortin 97.2 0.0012 4E-08 59.9 9.3 26 29-55 165-190 (444)
273 4b4t_J 26S protease regulatory 97.2 0.00052 1.8E-08 61.6 6.7 103 26-148 179-300 (405)
274 2chg_A Replication factor C sm 97.2 0.00059 2E-08 54.3 6.3 21 33-54 40-60 (226)
275 3lw7_A Adenylate kinase relate 97.2 0.00019 6.3E-09 55.4 3.1 19 33-52 3-21 (179)
276 1m2o_B GTP-binding protein SAR 97.2 0.00015 5.3E-09 57.5 2.7 32 21-54 14-45 (190)
277 2qp9_X Vacuolar protein sortin 97.2 0.0016 5.3E-08 57.3 9.4 25 30-55 83-107 (355)
278 3iij_A Coilin-interacting nucl 97.2 0.00017 5.6E-09 56.8 2.7 26 27-53 7-32 (180)
279 3vfd_A Spastin; ATPase, microt 97.2 0.0029 9.7E-08 56.1 11.1 24 30-54 147-170 (389)
280 4b4t_L 26S protease subunit RP 97.2 0.0007 2.4E-08 61.4 7.1 103 28-148 212-333 (437)
281 1kht_A Adenylate kinase; phosp 97.2 0.00018 6.3E-09 56.6 3.0 23 31-54 3-25 (192)
282 3cmu_A Protein RECA, recombina 97.2 0.00057 2E-08 72.0 7.2 144 21-170 720-900 (2050)
283 2ze6_A Isopentenyl transferase 97.2 0.00019 6.4E-09 60.3 2.9 22 32-54 2-23 (253)
284 2v1u_A Cell division control p 97.1 0.00018 6.2E-09 62.8 3.0 26 29-55 42-67 (387)
285 3hu3_A Transitional endoplasmi 97.1 0.0006 2.1E-08 62.7 6.5 26 28-54 235-260 (489)
286 2qag_A Septin-2, protein NEDD5 97.1 5.7E-05 2E-09 66.9 -0.4 39 10-55 17-60 (361)
287 2wjg_A FEOB, ferrous iron tran 97.1 0.00023 7.8E-09 55.8 3.1 23 32-55 8-30 (188)
288 1sxj_C Activator 1 40 kDa subu 97.1 5.3E-05 1.8E-09 66.1 -0.8 35 21-56 34-70 (340)
289 2zej_A Dardarin, leucine-rich 97.1 0.00024 8.2E-09 55.9 3.0 22 33-55 4-25 (184)
290 1d2n_A N-ethylmaleimide-sensit 97.1 0.00087 3E-08 56.2 6.7 26 29-55 62-87 (272)
291 1np6_A Molybdopterin-guanine d 97.1 0.00022 7.4E-09 56.7 2.7 31 32-63 7-38 (174)
292 1vht_A Dephospho-COA kinase; s 97.1 0.0003 1E-08 57.1 3.6 24 30-54 3-26 (218)
293 4b4t_K 26S protease regulatory 97.1 0.00078 2.7E-08 61.0 6.6 101 30-148 205-324 (428)
294 3syl_A Protein CBBX; photosynt 97.1 0.0027 9.3E-08 53.9 9.7 26 29-55 65-90 (309)
295 1xjc_A MOBB protein homolog; s 97.1 0.00038 1.3E-08 55.1 4.0 33 32-65 5-38 (169)
296 2v54_A DTMP kinase, thymidylat 97.0 0.00031 1.1E-08 56.1 3.2 24 30-54 3-26 (204)
297 2jaq_A Deoxyguanosine kinase; 97.0 0.0003 1E-08 55.9 3.1 21 33-54 2-22 (205)
298 4b4t_I 26S protease regulatory 97.0 0.00092 3.1E-08 60.4 6.5 102 28-148 213-334 (437)
299 4b4t_M 26S protease regulatory 97.0 0.00066 2.3E-08 61.5 5.6 103 28-148 212-333 (434)
300 1gvn_B Zeta; postsegregational 97.0 0.00032 1.1E-08 60.0 3.3 27 27-54 29-55 (287)
301 2plr_A DTMP kinase, probable t 97.0 0.00039 1.3E-08 55.6 3.5 24 30-54 3-26 (213)
302 3r20_A Cytidylate kinase; stru 97.0 0.00032 1.1E-08 58.4 3.1 22 32-54 10-31 (233)
303 3trf_A Shikimate kinase, SK; a 97.0 0.00032 1.1E-08 55.2 2.9 24 30-54 4-27 (185)
304 1uf9_A TT1252 protein; P-loop, 97.0 0.00041 1.4E-08 55.2 3.5 24 31-55 8-31 (203)
305 1ly1_A Polynucleotide kinase; 97.0 0.00039 1.3E-08 54.1 3.3 22 32-54 3-24 (181)
306 1via_A Shikimate kinase; struc 97.0 0.00034 1.2E-08 54.8 2.8 21 33-54 6-26 (175)
307 3co5_A Putative two-component 97.0 0.002 6.9E-08 48.9 7.1 25 30-55 26-50 (143)
308 3t15_A Ribulose bisphosphate c 97.0 0.00086 2.9E-08 57.3 5.6 25 30-55 35-59 (293)
309 1ex7_A Guanylate kinase; subst 97.0 0.00035 1.2E-08 56.1 2.9 20 33-53 3-22 (186)
310 2c95_A Adenylate kinase 1; tra 97.0 0.00039 1.3E-08 55.0 3.0 25 29-54 7-31 (196)
311 2wwf_A Thymidilate kinase, put 97.0 0.00039 1.3E-08 55.8 3.1 26 28-54 7-32 (212)
312 1tev_A UMP-CMP kinase; ploop, 97.0 0.00045 1.5E-08 54.4 3.4 24 30-54 2-25 (196)
313 1q57_A DNA primase/helicase; d 97.0 0.00067 2.3E-08 62.4 5.0 144 27-170 238-441 (503)
314 2r2a_A Uncharacterized protein 96.9 0.0031 1.1E-07 51.0 8.2 40 108-148 87-136 (199)
315 3pfi_A Holliday junction ATP-d 96.9 0.0088 3E-07 51.5 11.6 22 32-54 56-77 (338)
316 2cjw_A GTP-binding protein GEM 96.9 0.0011 3.9E-08 52.6 5.4 21 33-54 8-28 (192)
317 1nn5_A Similar to deoxythymidy 96.9 0.00045 1.6E-08 55.5 3.0 26 28-54 6-31 (215)
318 1gtv_A TMK, thymidylate kinase 96.9 0.00023 7.8E-09 57.3 1.0 22 33-55 2-23 (214)
319 1nks_A Adenylate kinase; therm 96.9 0.00053 1.8E-08 53.9 3.0 21 33-54 3-23 (194)
320 3dm5_A SRP54, signal recogniti 96.9 0.0051 1.7E-07 55.8 9.8 35 30-65 99-134 (443)
321 2bwj_A Adenylate kinase 5; pho 96.8 0.00035 1.2E-08 55.4 1.9 27 27-54 8-34 (199)
322 4b4t_H 26S protease regulatory 96.8 0.0012 4E-08 60.3 5.5 103 28-148 240-361 (467)
323 1c9k_A COBU, adenosylcobinamid 96.8 0.0024 8.1E-08 51.0 6.7 20 33-53 1-20 (180)
324 3lxx_A GTPase IMAP family memb 96.8 0.00058 2E-08 56.2 2.9 23 33-56 31-53 (239)
325 3cf2_A TER ATPase, transitiona 96.8 0.0016 5.5E-08 63.3 6.3 103 28-148 235-353 (806)
326 2vli_A Antibiotic resistance p 96.8 0.00041 1.4E-08 54.3 1.8 23 30-53 4-26 (183)
327 2z0h_A DTMP kinase, thymidylat 96.8 0.00067 2.3E-08 53.7 3.0 21 33-54 2-22 (197)
328 1aky_A Adenylate kinase; ATP:A 96.7 0.00074 2.5E-08 54.9 3.1 24 30-54 3-26 (220)
329 3ake_A Cytidylate kinase; CMP 96.7 0.00063 2.2E-08 54.3 2.7 21 33-54 4-24 (208)
330 1qf9_A UMP/CMP kinase, protein 96.7 0.00095 3.3E-08 52.4 3.7 24 30-54 5-28 (194)
331 1sxj_A Activator 1 95 kDa subu 96.7 0.00094 3.2E-08 61.7 3.9 24 31-55 77-100 (516)
332 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00064 2.2E-08 60.9 2.7 29 26-55 17-45 (396)
333 3llm_A ATP-dependent RNA helic 96.7 0.00056 1.9E-08 56.4 2.1 24 28-52 73-96 (235)
334 3pvs_A Replication-associated 96.7 0.0011 3.7E-08 60.3 4.1 27 28-55 45-73 (447)
335 1ukz_A Uridylate kinase; trans 96.7 0.0011 3.8E-08 52.9 3.8 25 28-53 12-36 (203)
336 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00076 2.6E-08 59.7 2.9 23 33-56 181-203 (364)
337 2pbr_A DTMP kinase, thymidylat 96.7 0.00091 3.1E-08 52.6 3.0 21 33-54 2-22 (195)
338 3k53_A Ferrous iron transport 96.7 0.00086 2.9E-08 56.5 3.0 22 33-55 5-26 (271)
339 1zd8_A GTP:AMP phosphotransfer 96.7 0.00084 2.9E-08 54.9 2.9 25 29-54 5-29 (227)
340 1mky_A Probable GTP-binding pr 96.7 0.00077 2.6E-08 60.9 2.9 23 32-55 181-203 (439)
341 1zuh_A Shikimate kinase; alpha 96.6 0.00091 3.1E-08 51.8 2.9 22 32-54 8-29 (168)
342 1zak_A Adenylate kinase; ATP:A 96.6 0.00075 2.6E-08 54.9 2.4 24 30-54 4-27 (222)
343 3fb4_A Adenylate kinase; psych 96.6 0.00097 3.3E-08 53.8 3.0 21 33-54 2-22 (216)
344 2cdn_A Adenylate kinase; phosp 96.6 0.0011 3.6E-08 53.1 3.1 24 30-54 19-42 (201)
345 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.3E-08 55.2 3.5 25 29-54 2-26 (260)
346 1e6c_A Shikimate kinase; phosp 96.6 0.00091 3.1E-08 51.8 2.5 22 32-54 3-24 (173)
347 2pt5_A Shikimate kinase, SK; a 96.6 0.0012 4E-08 51.0 3.1 21 33-54 2-22 (168)
348 2grj_A Dephospho-COA kinase; T 96.6 0.0012 3.9E-08 53.2 3.0 23 31-54 12-34 (192)
349 3u61_B DNA polymerase accessor 96.6 0.0085 2.9E-07 51.3 8.7 96 32-147 49-148 (324)
350 3dl0_A Adenylate kinase; phosp 96.6 0.0012 4E-08 53.4 3.0 20 33-53 2-21 (216)
351 1uj2_A Uridine-cytidine kinase 96.5 0.0013 4.4E-08 54.7 3.0 23 31-54 22-44 (252)
352 2iyv_A Shikimate kinase, SK; t 96.5 0.00097 3.3E-08 52.4 2.1 22 32-54 3-24 (184)
353 1fzq_A ADP-ribosylation factor 96.5 0.0013 4.6E-08 51.4 2.9 24 31-55 16-39 (181)
354 3q72_A GTP-binding protein RAD 96.5 0.0014 4.9E-08 49.8 2.9 22 33-55 4-25 (166)
355 3tlx_A Adenylate kinase 2; str 96.4 0.0018 6.3E-08 53.7 3.6 25 29-54 27-51 (243)
356 2ged_A SR-beta, signal recogni 96.4 0.0014 4.7E-08 51.5 2.7 22 33-55 50-71 (193)
357 2xb4_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 53.2 3.1 21 33-54 2-22 (223)
358 2nzj_A GTP-binding protein REM 96.4 0.0017 5.9E-08 49.7 2.9 22 33-55 6-27 (175)
359 3tw8_B RAS-related protein RAB 96.4 0.0019 6.3E-08 49.8 3.0 22 33-55 11-32 (181)
360 1z2a_A RAS-related protein RAB 96.4 0.0015 5.1E-08 49.7 2.4 22 33-55 7-28 (168)
361 2erx_A GTP-binding protein DI- 96.4 0.0018 6.3E-08 49.3 2.9 22 33-55 5-26 (172)
362 3e1s_A Exodeoxyribonuclease V, 96.4 0.0033 1.1E-07 58.9 5.2 36 30-66 203-239 (574)
363 1moz_A ARL1, ADP-ribosylation 96.4 0.0013 4.5E-08 51.0 2.1 24 30-54 17-40 (183)
364 2f6r_A COA synthase, bifunctio 96.3 0.0022 7.4E-08 54.5 3.5 23 30-53 74-96 (281)
365 2dyk_A GTP-binding protein; GT 96.3 0.0016 5.6E-08 49.1 2.5 22 33-55 3-24 (161)
366 3q85_A GTP-binding protein REM 96.3 0.0019 6.6E-08 49.2 2.9 22 33-55 4-25 (169)
367 3umf_A Adenylate kinase; rossm 96.3 0.0025 8.7E-08 52.3 3.7 30 24-54 22-51 (217)
368 2ce2_X GTPase HRAS; signaling 96.3 0.0016 5.5E-08 49.1 2.3 22 33-55 5-26 (166)
369 1kao_A RAP2A; GTP-binding prot 96.3 0.0017 5.9E-08 49.1 2.5 21 33-54 5-25 (167)
370 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0021 7.2E-08 57.0 3.4 62 108-170 262-334 (392)
371 4dcu_A GTP-binding protein ENG 96.3 0.013 4.5E-07 53.1 8.7 22 33-55 25-46 (456)
372 1qvr_A CLPB protein; coiled co 96.3 0.0079 2.7E-07 58.8 7.6 25 32-57 589-613 (854)
373 3b1v_A Ferrous iron uptake tra 96.3 0.0021 7.3E-08 54.5 3.2 22 33-55 5-26 (272)
374 3be4_A Adenylate kinase; malar 96.3 0.0019 6.6E-08 52.4 2.8 24 30-54 4-27 (217)
375 1u8z_A RAS-related protein RAL 96.3 0.0018 6.2E-08 49.0 2.4 21 33-54 6-26 (168)
376 1z0j_A RAB-22, RAS-related pro 96.3 0.0019 6.3E-08 49.2 2.5 22 33-55 8-29 (170)
377 1a7j_A Phosphoribulokinase; tr 96.3 0.0011 3.7E-08 56.8 1.2 24 30-54 4-27 (290)
378 1g16_A RAS-related protein SEC 96.2 0.0018 6.2E-08 49.3 2.3 22 33-55 5-26 (170)
379 1ek0_A Protein (GTP-binding pr 96.2 0.0019 6.4E-08 49.1 2.4 22 33-55 5-26 (170)
380 1svi_A GTP-binding protein YSX 96.2 0.0019 6.6E-08 50.6 2.6 23 32-55 24-46 (195)
381 1e4v_A Adenylate kinase; trans 96.2 0.0022 7.4E-08 51.8 2.9 21 33-54 2-22 (214)
382 1ky3_A GTP-binding protein YPT 96.2 0.0019 6.5E-08 49.8 2.5 22 33-55 10-31 (182)
383 1z08_A RAS-related protein RAB 96.2 0.0019 6.6E-08 49.2 2.5 22 33-55 8-29 (170)
384 3pqc_A Probable GTP-binding pr 96.2 0.002 6.9E-08 50.3 2.6 22 33-55 25-46 (195)
385 2lkc_A Translation initiation 96.2 0.0027 9.4E-08 48.8 3.3 25 30-55 7-31 (178)
386 3zvl_A Bifunctional polynucleo 96.2 0.0029 9.8E-08 56.9 3.9 28 26-54 253-280 (416)
387 2cxx_A Probable GTP-binding pr 96.2 0.0021 7.1E-08 50.0 2.6 22 33-55 3-24 (190)
388 1c1y_A RAS-related protein RAP 96.2 0.002 7E-08 48.8 2.4 21 33-54 5-25 (167)
389 1ltq_A Polynucleotide kinase; 96.2 0.0026 8.9E-08 54.0 3.3 22 32-54 3-24 (301)
390 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0021 7.2E-08 49.4 2.5 22 33-55 9-30 (177)
391 4edh_A DTMP kinase, thymidylat 96.2 0.0031 1.1E-07 51.5 3.5 25 29-54 4-28 (213)
392 2fn4_A P23, RAS-related protei 96.2 0.0021 7.3E-08 49.4 2.4 22 33-55 11-32 (181)
393 4fcw_A Chaperone protein CLPB; 96.2 0.0027 9.3E-08 53.9 3.2 25 31-56 47-71 (311)
394 1ak2_A Adenylate kinase isoenz 96.1 0.0029 1E-07 51.9 3.2 24 30-54 15-38 (233)
395 3a8t_A Adenylate isopentenyltr 96.1 0.0033 1.1E-07 55.1 3.5 24 30-54 39-62 (339)
396 3pxi_A Negative regulator of g 96.1 0.034 1.2E-06 53.5 11.0 24 33-57 523-546 (758)
397 2qmh_A HPR kinase/phosphorylas 96.1 0.0032 1.1E-07 51.2 3.2 23 30-52 33-55 (205)
398 1qvr_A CLPB protein; coiled co 96.1 0.0081 2.8E-07 58.8 6.7 24 32-56 192-215 (854)
399 2hxs_A RAB-26, RAS-related pro 96.1 0.0028 9.7E-08 48.7 2.8 22 33-55 8-29 (178)
400 3t1o_A Gliding protein MGLA; G 96.1 0.0024 8.2E-08 49.9 2.4 22 33-55 16-37 (198)
401 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0025 8.5E-08 49.5 2.5 22 33-55 6-27 (189)
402 3lxw_A GTPase IMAP family memb 96.1 0.0028 9.5E-08 52.7 2.9 22 33-55 23-44 (247)
403 1r2q_A RAS-related protein RAB 96.1 0.0025 8.6E-08 48.4 2.4 21 33-54 8-28 (170)
404 3cbq_A GTP-binding protein REM 96.1 0.0027 9.1E-08 50.5 2.6 22 33-55 25-46 (195)
405 3clv_A RAB5 protein, putative; 96.1 0.0025 8.7E-08 49.8 2.5 22 33-55 9-30 (208)
406 1upt_A ARL1, ADP-ribosylation 96.1 0.0026 8.8E-08 48.5 2.4 23 31-54 7-29 (171)
407 2oil_A CATX-8, RAS-related pro 96.1 0.0025 8.7E-08 50.0 2.4 22 33-55 27-48 (193)
408 3v9p_A DTMP kinase, thymidylat 96.1 0.0026 8.9E-08 52.6 2.5 25 29-54 23-47 (227)
409 2ocp_A DGK, deoxyguanosine kin 96.1 0.0036 1.2E-07 51.5 3.4 24 30-54 1-24 (241)
410 3d3q_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 55.4 3.0 22 32-54 8-29 (340)
411 3bc1_A RAS-related protein RAB 96.0 0.0027 9.1E-08 49.4 2.4 22 33-55 13-34 (195)
412 1r8s_A ADP-ribosylation factor 96.0 0.0029 9.9E-08 48.0 2.4 20 34-54 3-22 (164)
413 2y8e_A RAB-protein 6, GH09086P 96.0 0.0028 9.4E-08 48.7 2.3 21 33-54 16-36 (179)
414 1z0f_A RAB14, member RAS oncog 96.0 0.0029 9.9E-08 48.6 2.4 22 33-55 17-38 (179)
415 3lv8_A DTMP kinase, thymidylat 96.0 0.0034 1.2E-07 52.2 3.0 24 30-54 26-49 (236)
416 1ksh_A ARF-like protein 2; sma 96.0 0.0036 1.2E-07 48.7 3.0 25 29-54 16-40 (186)
417 3tqf_A HPR(Ser) kinase; transf 96.0 0.0044 1.5E-07 49.3 3.4 23 30-52 15-37 (181)
418 2a9k_A RAS-related protein RAL 96.0 0.0029 1E-07 48.9 2.4 21 33-54 20-40 (187)
419 1wf3_A GTP-binding protein; GT 96.0 0.0036 1.2E-07 53.8 3.1 22 33-55 9-30 (301)
420 3ihw_A Centg3; RAS, centaurin, 96.0 0.0031 1.1E-07 49.6 2.5 21 33-54 22-42 (184)
421 2g6b_A RAS-related protein RAB 96.0 0.0031 1.1E-07 48.6 2.4 22 33-55 12-33 (180)
422 3con_A GTPase NRAS; structural 95.9 0.0032 1.1E-07 49.2 2.4 22 33-55 23-44 (190)
423 4tmk_A Protein (thymidylate ki 95.9 0.0039 1.3E-07 51.0 3.0 24 30-54 2-25 (213)
424 1nrj_B SR-beta, signal recogni 95.9 0.0031 1.1E-07 50.5 2.4 22 33-55 14-35 (218)
425 3ld9_A DTMP kinase, thymidylat 95.9 0.0047 1.6E-07 50.9 3.5 25 29-54 19-43 (223)
426 2efe_B Small GTP-binding prote 95.9 0.0033 1.1E-07 48.5 2.5 22 33-55 14-35 (181)
427 3t5d_A Septin-7; GTP-binding p 95.9 0.0037 1.3E-07 52.7 2.9 22 33-55 10-31 (274)
428 2bme_A RAB4A, RAS-related prot 95.9 0.0031 1.1E-07 48.9 2.3 22 33-55 12-33 (186)
429 2bov_A RAla, RAS-related prote 95.9 0.0033 1.1E-07 49.7 2.4 21 33-54 16-36 (206)
430 1p5z_B DCK, deoxycytidine kina 95.9 0.003 1E-07 52.8 2.3 26 28-54 21-46 (263)
431 2il1_A RAB12; G-protein, GDP, 95.9 0.0041 1.4E-07 49.0 3.0 22 33-55 28-49 (192)
432 3exa_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 53.6 3.5 22 31-53 3-24 (322)
433 1vg8_A RAS-related protein RAB 95.9 0.0034 1.2E-07 49.7 2.5 22 33-55 10-31 (207)
434 2h57_A ADP-ribosylation factor 95.9 0.0036 1.2E-07 49.0 2.6 24 32-56 22-45 (190)
435 1m7b_A RND3/RHOE small GTP-bin 95.9 0.0033 1.1E-07 49.1 2.3 22 33-55 9-30 (184)
436 2xtp_A GTPase IMAP family memb 95.9 0.0042 1.4E-07 51.6 3.1 23 32-55 23-45 (260)
437 3crm_A TRNA delta(2)-isopenten 95.9 0.0041 1.4E-07 54.1 3.1 22 32-54 6-27 (323)
438 3iev_A GTP-binding protein ERA 95.9 0.0042 1.4E-07 53.4 3.1 23 32-55 11-33 (308)
439 2h92_A Cytidylate kinase; ross 95.9 0.0034 1.2E-07 50.6 2.4 23 31-54 3-25 (219)
440 2wsm_A Hydrogenase expression/ 95.9 0.0038 1.3E-07 50.2 2.6 24 31-55 30-53 (221)
441 2gf0_A GTP-binding protein DI- 95.8 0.0036 1.2E-07 49.1 2.4 21 33-54 10-30 (199)
442 3tmk_A Thymidylate kinase; pho 95.8 0.0046 1.6E-07 50.7 3.0 25 29-54 3-27 (216)
443 2dby_A GTP-binding protein; GD 95.8 0.0035 1.2E-07 55.6 2.4 21 34-55 4-24 (368)
444 2gf9_A RAS-related protein RAB 95.8 0.0038 1.3E-07 48.8 2.4 22 33-55 24-45 (189)
445 2fg5_A RAB-22B, RAS-related pr 95.8 0.0038 1.3E-07 49.1 2.4 22 33-55 25-46 (192)
446 4bas_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 48.4 3.0 23 32-55 18-40 (199)
447 3tkl_A RAS-related protein RAB 95.8 0.0039 1.3E-07 48.8 2.4 22 33-55 18-39 (196)
448 1zbd_A Rabphilin-3A; G protein 95.8 0.0046 1.6E-07 48.9 2.9 22 33-55 10-31 (203)
449 3iby_A Ferrous iron transport 95.8 0.0046 1.6E-07 51.8 3.0 22 33-55 3-24 (256)
450 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0039 1.3E-07 48.2 2.4 21 33-54 7-27 (186)
451 3kkq_A RAS-related protein M-R 95.8 0.0039 1.3E-07 48.3 2.4 21 33-54 20-40 (183)
452 2o52_A RAS-related protein RAB 95.8 0.0046 1.6E-07 49.1 2.8 22 33-55 27-48 (200)
453 4dhe_A Probable GTP-binding pr 95.8 0.0029 9.9E-08 50.9 1.6 23 32-55 30-52 (223)
454 3upu_A ATP-dependent DNA helic 95.8 0.0086 2.9E-07 54.3 4.9 39 106-145 126-165 (459)
455 1zj6_A ADP-ribosylation factor 95.8 0.0047 1.6E-07 48.2 2.8 23 31-54 16-38 (187)
456 3t5g_A GTP-binding protein RHE 95.7 0.0042 1.4E-07 48.0 2.3 21 33-54 8-28 (181)
457 1z06_A RAS-related protein RAB 95.7 0.0044 1.5E-07 48.5 2.5 21 33-54 22-42 (189)
458 1ko7_A HPR kinase/phosphatase; 95.7 0.004 1.4E-07 54.0 2.3 31 21-53 135-165 (314)
459 2qu8_A Putative nucleolar GTP- 95.7 0.0053 1.8E-07 49.9 3.0 24 31-55 29-52 (228)
460 3oes_A GTPase rhebl1; small GT 95.7 0.0042 1.4E-07 49.2 2.3 25 30-55 23-47 (201)
461 2a5j_A RAS-related protein RAB 95.7 0.0045 1.6E-07 48.6 2.4 22 33-55 23-44 (191)
462 3dz8_A RAS-related protein RAB 95.7 0.0044 1.5E-07 48.6 2.3 24 33-57 25-48 (191)
463 2h17_A ADP-ribosylation factor 95.7 0.0044 1.5E-07 48.2 2.3 23 32-55 22-44 (181)
464 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0044 1.5E-07 49.2 2.3 22 33-55 10-31 (206)
465 2ew1_A RAS-related protein RAB 95.7 0.0044 1.5E-07 49.6 2.3 21 33-54 28-48 (201)
466 3bwd_D RAC-like GTP-binding pr 95.7 0.0047 1.6E-07 47.6 2.4 21 33-54 10-30 (182)
467 3llu_A RAS-related GTP-binding 95.7 0.0055 1.9E-07 48.4 2.8 21 33-54 22-42 (196)
468 3foz_A TRNA delta(2)-isopenten 95.6 0.0072 2.5E-07 52.3 3.6 22 31-53 10-31 (316)
469 1jwy_B Dynamin A GTPase domain 95.6 0.0058 2E-07 52.1 3.0 24 33-57 26-49 (315)
470 2b6h_A ADP-ribosylation factor 95.6 0.006 2.1E-07 48.1 2.9 24 30-54 28-51 (192)
471 2f7s_A C25KG, RAS-related prot 95.6 0.006 2.1E-07 48.8 2.9 24 33-57 27-50 (217)
472 3a1s_A Iron(II) transport prot 95.6 0.0064 2.2E-07 50.9 3.2 22 33-55 7-28 (258)
473 2q3h_A RAS homolog gene family 95.6 0.006 2.1E-07 48.1 2.9 24 31-55 20-43 (201)
474 2atv_A RERG, RAS-like estrogen 95.6 0.0051 1.8E-07 48.4 2.5 23 32-55 29-51 (196)
475 3reg_A RHO-like small GTPase; 95.6 0.0051 1.7E-07 48.3 2.4 22 33-55 25-46 (194)
476 1zd9_A ADP-ribosylation factor 95.6 0.0051 1.7E-07 48.2 2.4 23 32-55 23-45 (188)
477 3sr0_A Adenylate kinase; phosp 95.6 0.0063 2.1E-07 49.4 3.0 21 33-54 2-22 (206)
478 2p5s_A RAS and EF-hand domain 95.6 0.0051 1.7E-07 48.7 2.4 24 31-55 28-51 (199)
479 1r6b_X CLPA protein; AAA+, N-t 95.6 0.027 9.1E-07 54.2 7.9 24 32-56 489-512 (758)
480 1x3s_A RAS-related protein RAB 95.6 0.0052 1.8E-07 48.0 2.4 22 33-55 17-38 (195)
481 1jal_A YCHF protein; nucleotid 95.6 0.0051 1.7E-07 54.4 2.6 24 31-55 2-25 (363)
482 1sky_E F1-ATPase, F1-ATP synth 95.6 0.0056 1.9E-07 56.0 2.9 29 26-55 146-174 (473)
483 2j1l_A RHO-related GTP-binding 95.6 0.0061 2.1E-07 49.0 2.8 22 33-55 36-57 (214)
484 3i8s_A Ferrous iron transport 95.6 0.0064 2.2E-07 51.3 3.1 22 33-55 5-26 (274)
485 3cph_A RAS-related protein SEC 95.6 0.0053 1.8E-07 48.7 2.4 24 31-55 20-43 (213)
486 2fv8_A H6, RHO-related GTP-bin 95.6 0.006 2.1E-07 48.6 2.7 32 23-55 17-48 (207)
487 2fu5_C RAS-related protein RAB 95.5 0.0042 1.4E-07 48.1 1.6 22 33-55 10-31 (183)
488 1gwn_A RHO-related GTP-binding 95.5 0.0054 1.8E-07 49.2 2.3 22 33-55 30-51 (205)
489 2iwr_A Centaurin gamma 1; ANK 95.5 0.0042 1.4E-07 47.9 1.6 22 33-55 9-30 (178)
490 2hf9_A Probable hydrogenase ni 95.5 0.0093 3.2E-07 48.0 3.7 24 31-55 38-61 (226)
491 3c5c_A RAS-like protein 12; GD 95.5 0.006 2.1E-07 47.8 2.5 21 33-54 23-43 (187)
492 2r62_A Cell division protease 95.5 0.0018 6.2E-08 54.0 -0.7 29 24-55 39-67 (268)
493 2fh5_B SR-beta, signal recogni 95.5 0.0061 2.1E-07 48.6 2.4 21 33-54 9-29 (214)
494 2gco_A H9, RHO-related GTP-bin 95.4 0.0065 2.2E-07 48.2 2.3 22 33-55 27-48 (201)
495 2x77_A ADP-ribosylation factor 95.4 0.0063 2.1E-07 47.5 2.1 24 30-54 21-44 (189)
496 2atx_A Small GTP binding prote 95.4 0.007 2.4E-07 47.4 2.4 22 33-55 20-41 (194)
497 2aka_B Dynamin-1; fusion prote 95.4 0.0072 2.4E-07 51.0 2.6 24 33-57 28-51 (299)
498 3def_A T7I23.11 protein; chlor 95.3 0.0088 3E-07 49.9 3.1 23 32-55 37-59 (262)
499 2g3y_A GTP-binding protein GEM 95.3 0.0093 3.2E-07 48.4 2.9 21 33-54 39-59 (211)
500 4djt_A GTP-binding nuclear pro 95.3 0.0043 1.5E-07 49.7 0.9 22 33-55 13-34 (218)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-34 Score=258.17 Aligned_cols=164 Identities=14% Similarity=0.088 Sum_probs=134.5
Q ss_pred CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccch
Q 026304 7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSK 69 (240)
Q Consensus 7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~ 69 (240)
..+||+++||+++| |+||||+|++||+++|+||||||||||+ |+|+|+ .++|+++...+...
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl-r~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34589999999998 7899999999999999999999999999 999997 35677665544332
Q ss_pred hc-ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhh
Q 026304 70 DT-RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAY 106 (240)
Q Consensus 70 ~~-~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~ 106 (240)
.. ..+..+|+||+..+++.+|+.+++.+.... +..++
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 11 123469999999999999998887654221 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|||||||+ +..++++|++++++.|+|||++|||++.+ ..+||||++|++ +++..|+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~----------~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV----------KRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEECCBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999988 45799999999875799999999999999 999999999999 999999876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
.+
T Consensus 250 ev 251 (366)
T 3tui_C 250 EV 251 (366)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-34 Score=256.83 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=131.0
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
++|+++||+++| |+|+||+|++||+++|+||||||||||| |+|+|+ .++|+++.........+.+.
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLL-RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 379999999999 9999999999999999999999999999 999997 45777764321111122234
Q ss_pred CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304 76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG 113 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll 113 (240)
.+|+||+..+++.+|+.+|+.+... + +..++.+|++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL 161 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6999999999999999877654211 0 122689999999
Q ss_pred EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ +.++++.+.++.++.|+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea----------~~~aDri~vl~~G~i~~~g~~~el 226 (359)
T 3fvq_A 162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA----------LQYADRIAVMKQGRILQTASPHEL 226 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHHCCEEEEEECCEEEEEeCHHHH
Confidence 999988 34677777777655799999999999999 999999999999 99999887654
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.5e-34 Score=247.42 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=126.0
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~ 72 (240)
..++|+++||+++| |++|||+|++||+++|+||||||||||+ ++|+|+ .++|+++..........
T Consensus 4 ~~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl-~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~ 82 (275)
T 3gfo_A 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLF-QNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82 (275)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred cCcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence 34689999999999 8999999999999999999999999999 999997 34565552111111111
Q ss_pred cCCCeEEEccCc-eecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304 73 YAIDSVVTHDGA-KLPCWALPELTSFRQKL------------------------------------------GDDAYAKL 109 (240)
Q Consensus 73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p 109 (240)
....+|+||++. .+...++.+++.+.... +..++.+|
T Consensus 83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 123589999752 23356777665443210 11258999
Q ss_pred cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
++|||||||+ +..++++|++++++.|+|||++|||++++ ..+||||++|++ +++.+|+++.+
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~----------~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV----------PLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG----------GGGCSEEEEEETTEEEEEECHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999988 45799999999732599999999999999 899999999999 99999987653
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.1e-34 Score=254.94 Aligned_cols=157 Identities=24% Similarity=0.194 Sum_probs=132.0
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++||+++| |+++||++++||+++|+||||||||||| |+|+|+ .++|+++...++. + +..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~~~~~~~~---~-r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPA---E-RGV 77 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGG---G-SCE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHH-HHHHcCCCCCCeEEEECCEECCCCCHH---H-CCE
Confidence 69999999999 8999999999999999999999999999 999997 3566665443332 1 235
Q ss_pred eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL 114 (240)
+|+||+..+++.+|+.+|+.+.... +..++.+|++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999887664221 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +.++++.|+++.++.|+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA----------MTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEEeCHHHH
Confidence 99988 45788999999765699999999999999 999999999999 99988887653
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.4e-34 Score=244.01 Aligned_cols=161 Identities=17% Similarity=0.121 Sum_probs=127.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++|+++|+++.| |+++||+|++||+++|+||||||||||+ ++|+|+ .++|+++...+..... .
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~--~ 85 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLL-RLLTGYLSPSHGECHLLGQNLNSWQPKALA--R 85 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHH-HHHTSSSCCSSCEEEETTEETTTSCHHHHH--H
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCCHHHHh--h
Confidence 3589999999999 9999999999999999999999999999 999997 2345444332222111 1
Q ss_pred CCeEEEccCceecceecCcchhHHHh-----------------h-----------------------chhhhc------c
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQK-----------------L-----------------------GDDAYA------K 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~-----------------~-----------------------~~~l~~------~ 108 (240)
..+|++|...++..+++.+++.+... + +..++. +
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 24899998877676777665433210 0 112577 9
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|||||||+ +.+++++|++++++.++|||++|||++++ ..+|||+++|++ +++..|+++++
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~----------~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA----------ALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999988 45799999999875568999999999999 899999999999 99999988754
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.4e-34 Score=239.56 Aligned_cols=161 Identities=20% Similarity=0.151 Sum_probs=124.1
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT- 71 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~- 71 (240)
||+++||+++| |+++||++++||+++|+||||||||||+ ++|+|+ .++|+++...+.....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 58999999988 7899999999999999999999999999 999997 3455554433322211
Q ss_pred -ccCCCeEEEccCceecceecCcchhHHHhh----------------------------------------------chh
Q 026304 72 -RYAIDSVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------GDD 104 (240)
Q Consensus 72 -~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~ 104 (240)
+....+|++|++.+++.+++.++..+.... +..
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112258999999988888887766442100 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|||||||+ ..+++++|++++++.|+|||++|||++ . ..+|||+++|++ ++...++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~----------~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V----------ARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H----------HTTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H----------HHhCCEEEEEECCEEEEEcC
Confidence 589999999999988 457999999997645999999999998 4 479999999999 8887776
Q ss_pred cceee
Q 026304 178 RAFFT 182 (240)
Q Consensus 178 ~~~~~ 182 (240)
++.+.
T Consensus 229 ~~~~~ 233 (235)
T 3tif_A 229 LRGFD 233 (235)
T ss_dssp CC---
T ss_pred hhhhc
Confidence 65543
No 7
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-33 Score=238.03 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=125.0
Q ss_pred CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
..+||+++|++++| |+++||++++||+++|+||||||||||+ ++|+|+ .++|+++...++....+
T Consensus 3 ~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~- 80 (240)
T 1ji0_A 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINR- 80 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH-
T ss_pred CCceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCCHHHHHh-
Confidence 34589999999999 8999999999999999999999999999 999997 24455443222111112
Q ss_pred CCCeEEEccCceecceecCcchhHHH------------------hh------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ------------------KL------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~~------------------------~~~l~~~p~l 111 (240)
...+|++|+..+++.+|+.++..+.. .+ +..++.+|++
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 23589999988777766655433210 00 1125899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
|||||||+ +..++++|+++++ .|+|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 161 llLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGA----------LKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEEEHHH
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEEcCHHH
Confidence 99999988 4578999999976 699999999999999 899999999998 8877776654
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.98 E-value=3.9e-33 Score=238.73 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=123.8
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.+||+++|++++| |+++||++++||+++|+||||||||||+ ++|+|+ .++|+++...++....+.
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~- 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHY- 82 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHH-
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhC-
Confidence 4589999999999 8999999999999999999999999999 999997 234544422211111122
Q ss_pred CCeEEEccCceecceecCcchhHHH-------------------------h-------h---------------------
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-------------------------K-------L--------------------- 101 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-------------------------~-------~--------------------- 101 (240)
..+|++|+..+++.+++.++..+.. . +
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 3589999887777666654432210 0 0
Q ss_pred --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304 102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
+..++.+|++|||||||+ +..++++|+++++ .|+|||++|||++++ ..+||++++|++ ++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIV----------LNYIDHLYVMFNGQI 231 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTT----------GGGCSEEEEEETTEE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEE
Confidence 112589999999999988 4579999999987 599999999999999 899999999998 88
Q ss_pred eccCCcce
Q 026304 173 ELCGKRAF 180 (240)
Q Consensus 173 ~~~g~~~~ 180 (240)
...|+++.
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 77776654
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.98 E-value=5e-33 Score=238.80 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=126.5
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccch-hcccC
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSK-DTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~-~~~~~ 74 (240)
.||+++||+++| |+++||+|++||+++|+||||||||||+ ++|+|+ .++|+++. .+... .....
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL-RCLNLLEDFDEGEIIIDGINLK-AKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEESS-STTCCHHHHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHH-HHHHcCCCCCCcEEEECCEECC-CccccHHHHhC
Confidence 379999999999 8999999999999999999999999999 999997 24555442 11111 11111
Q ss_pred CCeEEEccCceecceecCcchhHHH-hh------------------------------------------chhhhccCcE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-KL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-~~------------------------------------------~~~l~~~p~l 111 (240)
..+|++|+..+++.+++.+++.+.. .. +..++.+|++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 2589999988888888877765521 00 1115899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||||||+ +..++++|+++++ +|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEMGFA----------REVGDRVLFMDGGYIIEEGKPEDL 246 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence 99999988 4579999999987 599999999999999 899999999998 88877776543
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.98 E-value=1.6e-32 Score=246.14 Aligned_cols=157 Identities=20% Similarity=0.127 Sum_probs=131.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe------eccchh
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM------IKSSKD 70 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~------~~~~~~ 70 (240)
+|+++|++++| |+++||++++||+++|+||||||||||| |+|+|+ .++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~-- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK-- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHH-HHHHcCCCCCccEEEECCEECccccccccCCHh--
Confidence 69999999999 8999999999999999999999999999 999997 457777654 2221
Q ss_pred cccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhcc
Q 026304 71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAK 108 (240)
Q Consensus 71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~ 108 (240)
+ +..+|+||+..+++.+++.+++.+.... +..++.+
T Consensus 80 -~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 80 -D-RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp -G-SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred -H-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2 2358999999999999998887663211 1125899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++||||||++ +.++++.|+++.++.|+|+|++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA----------MTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH----------HHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999988 45788999998764699999999999999 999999999999 99888887653
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=1.1e-32 Score=235.93 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=126.2
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~ 74 (240)
.++|+++||+++| |+++||++++|++++|+||||||||||+ ++|+|+. ++|+++.. .....+ .
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~--~~~~~~-~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVE--EPHEVR-K 88 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTT--CHHHHH-T
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCc--cHHHHh-h
Confidence 3589999999999 9999999999999999999999999999 9999972 34443321 011112 2
Q ss_pred CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI 112 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll 112 (240)
..+|++|+..+++.+|+.+++.+...+ +..++.+|++|
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 358999998888888887776542110 11258999999
Q ss_pred EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||||+ +..++++|+++++ .|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEV----------EFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHH----------TTTCSEEEEEETTEEEEEEEHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH----------HHHCCEEEEEECCEEEEecCHHHH
Confidence 9999988 4578999999876 699999999999999 899999999999 88877776544
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=1e-32 Score=231.56 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=122.2
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--ccc
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~ 73 (240)
+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+ .++|+++...+.... .+.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHH-HHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 489999999999 8999999999999999999999999999 999997 245555433221111 111
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l 111 (240)
...+|++|+..+++.+++.++..+.... +..++.+|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 2358999998888888887776542110 1115899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
|||||||+ +..++++|+++++ +|.|||++|||++++ .+||++++|++ ++...|+
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINE-GGTSIVMVTHERELA-----------ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH-----------TTSSEEEEEETTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH-----------HhCCEEEEEECCEEEEEee
Confidence 99999988 4578999999987 499999999998876 68999999998 8776654
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=6.7e-33 Score=237.92 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=126.6
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe----------
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM---------- 64 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~---------- 64 (240)
.+||+++||+++| ++++||+|++|++++|+||||||||||+ ++|+|+ .++|+++..
T Consensus 4 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4589999999999 8999999999999999999999999999 999997 345655431
Q ss_pred eccch--hcccCCCeEEEccCceecceecCcchhHHH-h-------------------h---------------------
Q 026304 65 IKSSK--DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-K-------------------L--------------------- 101 (240)
Q Consensus 65 ~~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-~-------------------~--------------------- 101 (240)
.+... ..+ ...+|++|+..+++.+++.+++.+.. . +
T Consensus 83 ~~~~~~~~~~-~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 83 ADKNQLRLLR-TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp SCHHHHHHHH-HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred cChhhHHHHh-cceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 11110 112 22589999988888878776665421 0 0
Q ss_pred ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304 102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R 171 (240)
Q Consensus 102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~ 171 (240)
+..++.+|++|||||||+ +..++++|+++++ .|+|||++|||++++ ..+||++++|++ +
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFA----------RHVSSHVIFLHQGK 230 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHH----------HHHCSEEEEEETTE
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence 111589999999999988 4578999999987 599999999999999 899999999999 8
Q ss_pred eeccCCccee
Q 026304 172 CELCGKRAFF 181 (240)
Q Consensus 172 ~~~~g~~~~~ 181 (240)
++..|+++.+
T Consensus 231 i~~~g~~~~~ 240 (262)
T 1b0u_A 231 IEEEGDPEQV 240 (262)
T ss_dssp EEEEECHHHH
T ss_pred EEEeCCHHHH
Confidence 8877776543
No 14
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.1e-32 Score=246.18 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=129.9
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||++++||+++|+||||||||||| |+|+|+ .++|+++...++. + +..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLL-YTIAGIYKPTSGKIYFDEKDVTELPPK---D-RNV 77 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-TTE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHh---H-CcE
Confidence 69999999999 8999999999999999999999999999 999997 3455555333221 2 235
Q ss_pred eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL 114 (240)
+|+||+..+++.+++.++..+.... +..++.+|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999999999999998887663210 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +.++.+.|+++.++.|+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA----------LAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 99988 45788999998764699999999999999 999999999999 99888887654
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=8.9e-33 Score=246.52 Aligned_cols=157 Identities=16% Similarity=0.061 Sum_probs=128.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| ++++||++++||+++|+||||||||||| |+|+|+ .++|+++...++. + +..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTL-LMLAGIYKPTSGEIYFDDVLVNDIPPK---Y-REV 77 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-TTE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHH-HHHHCCCCCCccEEEECCEECCCCChh---h-CcE
Confidence 69999999999 8999999999999999999999999999 999997 3455554333221 2 235
Q ss_pred eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL 114 (240)
+|+||+..+++.+|+.+++.+... + +..++.+|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999999999888877654211 0 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +.++++.|+++.++.|+|+|++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA----------MTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 99988 45788999998764699999999999999 999999999999 99888887653
No 16
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=1.4e-32 Score=244.73 Aligned_cols=160 Identities=21% Similarity=0.167 Sum_probs=131.1
Q ss_pred CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304 7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~ 72 (240)
..++|+++|++++| |+++||+|++||+++|+||||||||||| |+|+|+ .++|+++...++ .+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~---~~ 86 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTIL-RLIAGLERPTKGDVWIGGKRVTDLPP---QK 86 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCG---GG
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECCcCCh---hh
Confidence 35689999999998 7899999999999999999999999999 999997 345555432221 12
Q ss_pred cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD 110 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ 110 (240)
+..+|+||+..+++.+|+.++..+.... +..++.+|+
T Consensus 87 -r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 87 -RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp -SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2358999999999999998887653210 112589999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+||||||++ +.++++.|+++.++.|+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA----------LEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999988 45788999998764699999999999999 999999999999 99888887653
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=1.5e-32 Score=246.12 Aligned_cols=157 Identities=19% Similarity=0.127 Sum_probs=123.0
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~ 76 (240)
+|+++|++++| |+++||++++||+++|+||||||||||| |+|+|+ .++|+++...++. + +..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLPPK---D-RNI 85 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-GTE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCCCChh---h-CcE
Confidence 69999999999 8999999999999999999999999999 999997 3456555333221 2 235
Q ss_pred eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI 114 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL 114 (240)
+|+||+..+++.+|+.+++.+... + +..++.+|++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999999888877644210 0 1125899999999
Q ss_pred cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|||++ +.++++.|+++.++.|.|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA----------MTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 99988 45788999998764599999999999999 999999999999 99888887654
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=3.1e-32 Score=242.19 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=129.0
Q ss_pred eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS 77 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~ 77 (240)
||+++|++++| ++++||++++||+++|+||||||||||| |+|+|+ .++|+++...++ .+. ..+
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~---~~r-~ig 75 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSP---EKH-DIA 75 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCH---HHH-TCE
T ss_pred CEEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHH-HHHHcCCCCCCcEEEECCEECCCCch---hhC-cEE
Confidence 58999999998 8999999999999999999999999999 999997 345555432221 122 358
Q ss_pred EEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCcc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP~ 118 (240)
|+||+..+++.+|+.+++.+.... +..++.+|++||||||+
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 999999999999998887653210 11258999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+ +.++.+.|+++.++.|+|+|++|||++++ ..+|||+++|++ ++...|+++++
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA----------RIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH----------HHHCSEEEEESSSCEEEEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence 8 45788999998765699999999999999 999999999999 88888887654
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=5.1e-32 Score=241.40 Aligned_cols=161 Identities=20% Similarity=0.098 Sum_probs=128.8
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc-hhccc
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS-KDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~-~~~~~ 73 (240)
||+++|++++| |+++||++++||+++|+||||||||||| |+|+|+ .++|+++...... .....
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 69999999998 4599999999999999999999999999 999997 3567776541000 00111
Q ss_pred CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV 111 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l 111 (240)
+..+|+||+..+++.+++.++..+.... +..++.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 2358999999999998888776542110 1125899999
Q ss_pred EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||||++ +.++++.|+++.++.|+|+|++|||++++ ..+||||++|++ ++...|+++++
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI----------FAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999988 45789999998764699999999999999 999999999999 88888887653
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=2.7e-32 Score=231.29 Aligned_cols=156 Identities=19% Similarity=0.067 Sum_probs=122.7
Q ss_pred eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304 10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
||+++|++++| ++++||++++ ++++|+||||||||||+ ++|+|+. ++|+++...+ ..+ ...+|
T Consensus 1 ml~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~-~~i~~ 74 (240)
T 2onk_A 1 MFLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPLP---PER-RGIGF 74 (240)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSC---TTT-SCCBC
T ss_pred CEEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCc---hhh-CcEEE
Confidence 58999999999 9999999999 99999999999999999 9999972 3444432111 112 23589
Q ss_pred EEccCceecceecCcchhHHH----------h-------h-----------------------chhhhccCcEEEEcCcc
Q 026304 79 VTHDGAKLPCWALPELTSFRQ----------K-------L-----------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~~~----------~-------~-----------------------~~~l~~~p~lllLDEP~ 118 (240)
++|+..+++.+++.++..+.. + + +..++.+|++|||||||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999988888777766543310 0 0 11258999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+ +..++++|++++++.|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA----------AMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence 8 45789999998754589999999999999 899999999999 88877776543
No 21
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=5.9e-31 Score=226.39 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=118.1
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----------hCCceEEeeccchhcc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----------DNGRNIAMIKSSKDTR 72 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----------~~g~~i~~~~~~~~~~ 72 (240)
.+||+++||+++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...++....+
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4589999999999 8999999999999999999999999999 9999972 2333322111111112
Q ss_pred cCCCeEEEccCceecceecCcchhHH--------------------------Hhh-------------------------
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFR--------------------------QKL------------------------- 101 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------------~~~------------------------- 101 (240)
. ..+|++|++.+++.+++.++..+. ..+
T Consensus 97 ~-~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 97 E-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp H-TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred C-CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 1 247899988776655443332110 000
Q ss_pred chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eee
Q 026304 102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCE 173 (240)
Q Consensus 102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~ 173 (240)
+..++.+|++|||||||+ +..++++|+++++ .|+|||++|||++++ ..+ ||++++|++ ++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~----------~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRIL----------DYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGG----------GTSCCSEEEEEETTEEE
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHH----------HhhcCCEEEEEECCEEE
Confidence 112589999999999988 4578888888865 589999999999998 776 999999998 888
Q ss_pred ccCCcce
Q 026304 174 LCGKRAF 180 (240)
Q Consensus 174 ~~g~~~~ 180 (240)
..|+++.
T Consensus 245 ~~g~~~~ 251 (267)
T 2zu0_C 245 KSGDFTL 251 (267)
T ss_dssp EEECTTH
T ss_pred EEcCHHH
Confidence 7777654
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=7.3e-31 Score=223.73 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=118.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc----------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE----------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl----------~~~g~~i~~~~~~~~~~~~ 74 (240)
||+++|++++| |+++||++++|++++|+||||||||||+ ++|+|+ .++|+++...+.....+ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~-~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLG-KILAGDPEYTVERGEILLDGENILELSPDERAR-K 80 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH-T
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEECCCCCHHHHHh-C
Confidence 79999999999 8999999999999999999999999999 999996 12343332221111112 2
Q ss_pred CCeEEEccCceecceecCcchhHHH---------------h---------h-----------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ---------------K---------L-----------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------~---------~-----------------------~~~l~~ 107 (240)
..+|++|++.+++.+++.++..+.. . + ...++.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 2478899887777666655442210 0 0 111588
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeeccCCcc
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~g~~~ 179 (240)
+|++|||||||+ +..++++|+++.+ .|+|||++|||++++ ..+ ||++++|++ ++...|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRIL----------NYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGG----------GTSCCSEEEEEETTEEEEEESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH----------HHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999988 4578899998865 689999999999999 788 599999999 888777765
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=3.7e-31 Score=228.97 Aligned_cols=160 Identities=14% Similarity=0.039 Sum_probs=120.5
Q ss_pred CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEE--eeccchhcc
Q 026304 8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIA--MIKSSKDTR 72 (240)
Q Consensus 8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~--~~~~~~~~~ 72 (240)
.+||+++||+++| |+++||+|++||+++|+||||||||||+ ++|+|+ .++|+++. ..+.. ..+
T Consensus 19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~-~~~ 96 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLL-NILNAYEPATSGTVNLFGKMPGKVGYSAE-TVR 96 (279)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTBCCC---CCHH-HHH
T ss_pred CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCeEEEECCEEcccccCCHH-HHc
Confidence 4589999999999 8999999999999999999999999999 999997 24555442 21111 112
Q ss_pred cCCCeEEEccCce-e-cceecCcchhHH-----------------------Hhh-----------------------chh
Q 026304 73 YAIDSVVTHDGAK-L-PCWALPELTSFR-----------------------QKL-----------------------GDD 104 (240)
Q Consensus 73 ~~~~~~v~q~~~~-~-~~~~~~~~~~~~-----------------------~~~-----------------------~~~ 104 (240)
...+|++|+..+ + ..+++.+++.+. ..+ +..
T Consensus 97 -~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 -QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp -TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred -CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 235899997542 2 223554433210 000 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE--EEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV--VVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC 175 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv--i~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~ 175 (240)
++.+|++|||||||+ +..++++|++++++ |+|| |++|||++++ ..+||++++|++ ++...
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~----------~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEI----------TANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGC----------CTTCCEEEEEETTEEEEE
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHH----------HHhCCEEEEEECCEEEEE
Confidence 589999999999988 45789999999874 8999 9999999999 899999999999 88888
Q ss_pred CCccee
Q 026304 176 GKRAFF 181 (240)
Q Consensus 176 g~~~~~ 181 (240)
|+++.+
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 876543
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=2.5e-30 Score=220.86 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=120.1
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEc
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+. .....+|++|
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~--------~~~~i~~v~q 73 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLL-DLLLGIHRPIQGKIE--------VYQSIGFVPQ 73 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHH-HHHTTSSCCSEEEEE--------ECSCEEEECS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEE--------EeccEEEEcC
Confidence 379999999988 7899999999999999999999999999 99999732 222232 1123589999
Q ss_pred cCceecceecCcchhHHH----------------h-------h-----------------------chhhhccCcEEEEc
Q 026304 82 DGAKLPCWALPELTSFRQ----------------K-------L-----------------------GDDAYAKLDVIGID 115 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~----------------~-------~-----------------------~~~l~~~p~lllLD 115 (240)
+..+++.+++.++..+.. . + +..++.+|++||||
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 887776666655443210 0 0 11258999999999
Q ss_pred CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||++ +..++++|+++.++.|+|||++|||++++ ..+||++++|++ + ...|+++++
T Consensus 154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV----------VAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH----------HHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEeCCe-EecCCHHHH
Confidence 9988 45789999998764499999999999999 899999999998 8 777776543
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=8.8e-31 Score=229.18 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=123.8
Q ss_pred ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
..|+++||+|+| |+++||+|++|++++|+||||||||||+ ++|+|+ .++|.++..++.... | .
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~G~~i~~~~~~~~-r-~ 128 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISSGCIRIDGQDISQVTQASL-R-S 128 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHH-HHHTTSSCCSEEEEEETTEETTSBCHHHH-H-H
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCcEEEECCEEcccCCHHHH-h-c
Confidence 369999999999 8999999999999999999999999999 999997 356666544432221 2 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~ 107 (240)
..+|++|++.+|+. |+.+|+.+.. .+ +..++.
T Consensus 129 ~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp TEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 35899999988854 6665543311 00 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|||||||+ ...+++.|+++.+ ++|+|++|||++.+ .. ||+|++|++ +++..|++++
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~----------~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTV----------VN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHH----------HT-CSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHH----------Hc-CCEEEEEECCEEEEECCHHH
Confidence 999999999988 3478888888864 68999999999998 65 999999999 9999998875
Q ss_pred ee
Q 026304 181 FT 182 (240)
Q Consensus 181 ~~ 182 (240)
+.
T Consensus 275 l~ 276 (306)
T 3nh6_A 275 LL 276 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.96 E-value=2.5e-30 Score=222.91 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=118.5
Q ss_pred ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304 9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR 72 (240)
Q Consensus 9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~ 72 (240)
.+|+++||+++| |+++||+|++|++++|+||||||||||+ ++|+|+ .++|+++...+.. ..+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~-~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHH-YLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHH-HHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEcccCCHH-HHh
Confidence 489999999987 6789999999999999999999999999 999997 2345444222111 111
Q ss_pred cCCCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chh
Q 026304 73 YAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDD 104 (240)
Q Consensus 73 ~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~ 104 (240)
...+|++|++.+++. ++.+++.+. ..+ +..
T Consensus 93 -~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 93 -TQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp -HHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred -ccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 225899998877653 554433210 000 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|||||||+ +..++++|+++.++.|+|||++|||++.+ . .||++++|++ ++...|+
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~----------~-~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA----------E-RAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH----------T-TCSEEEEEETTEEEEEEC
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEECC
Confidence 589999999999988 45788888888654589999999999988 5 4999999999 8887777
Q ss_pred ccee
Q 026304 178 RAFF 181 (240)
Q Consensus 178 ~~~~ 181 (240)
++.+
T Consensus 240 ~~~l 243 (271)
T 2ixe_A 240 HLQL 243 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=3.5e-30 Score=219.41 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=121.5
Q ss_pred ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccc-----hhcccCCCeEEEc
Q 026304 9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSS-----KDTRYAIDSVVTH 81 (240)
Q Consensus 9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~-----~~~~~~~~~~v~q 81 (240)
.||+++|++++. ++++||++++|++++|+||||||||||+ ++|+|+. ..|. +...... ........+|++|
T Consensus 3 ~~l~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~G~-i~~~g~~~~~~~~~~~~~~i~~v~q 80 (249)
T 2qi9_C 3 IVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGS-IQFAGQPLEAWSATKLALHRAYLSQ 80 (249)
T ss_dssp EEEEEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCEEE-EEETTEEGGGSCHHHHHHHEEEECS
T ss_pred cEEEEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCeE-EEECCEECCcCCHHHHhceEEEECC
Confidence 379999999864 9999999999999999999999999999 9999973 1232 2211110 0011112589999
Q ss_pred cCceecceecCcchhHH--------------Hhh-----------------------chhhhccCc-------EEEEcCc
Q 026304 82 DGAKLPCWALPELTSFR--------------QKL-----------------------GDDAYAKLD-------VIGIDEA 117 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--------------~~~-----------------------~~~l~~~p~-------lllLDEP 117 (240)
+..+++.+++.+++.+. ..+ +..++.+|+ +||||||
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP 160 (249)
T 2qi9_C 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP 160 (249)
T ss_dssp CCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST
T ss_pred CCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC
Confidence 98877777776554321 000 112588999 9999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|+ +..++++|+++.+ +|+|||++|||++++ ..+||++++|++ ++...|+++.+
T Consensus 161 ts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 161 MNSLDVAQQSALDKILSALSQ-QGLAIVMSSHDLNHT----------LRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEEEHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence 88 4578999999976 599999999999999 899999999998 88877776543
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=3.3e-30 Score=218.80 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=117.3
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~ 75 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...+.. .....
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~--~~~~~ 77 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLE--NWRSQ 77 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCS--CCTTT
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHH--HHHhh
Confidence 58999999998 8899999999999999999999999999 9999972 344443221111 11223
Q ss_pred CeEEEccCceecceecCcchhHH--------------Hh----------------------------------hchhhhc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR--------------QK----------------------------------LGDDAYA 107 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~--------------~~----------------------------------~~~~l~~ 107 (240)
.+|++|++.+++. |+.+++.+. .. ++..++.
T Consensus 78 i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 78 IGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 5899998877653 554443221 00 0112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|||||||+ ...+++.|+++. .|+|||++|||++.+ . .||++++|++ ++...|+++.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~ 223 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTI----------V-DADKIYFIEKGQITGSGKHNE 223 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHH----------H-HCSEEEEEETTEECCCSCHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChHHH----------H-hCCEEEEEECCEEEEeCCHHH
Confidence 999999999988 457899999886 489999999999987 5 5999999999 8887787654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 224 ~ 224 (243)
T 1mv5_A 224 L 224 (243)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=99.96 E-value=1.3e-29 Score=207.20 Aligned_cols=176 Identities=46% Similarity=0.755 Sum_probs=149.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
..|+++.|.||+||||||.|++.+..+...|+.+..+++..+.|+. .+++++.+...++..+....++... ..+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~-----~~~ 91 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----ALG 91 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHH-----HHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHh-----ccC
Confidence 3699999999999999977769998888889999988888777765 4566655444444444444444433 357
Q ss_pred CcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecCC
Q 026304 109 LDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEE 188 (240)
Q Consensus 109 p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~~ 188 (240)
.++|++||.+|+.++.+.+..+++ .|+.||++++|.++.+++|+++.+|..+||+|..|+..|..||.+++++.|+..+
T Consensus 92 ~DvIlIDEaQFfk~~ve~~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~~ 170 (195)
T 1w4r_A 92 VAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE 170 (195)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCC
T ss_pred CCEEEEEchhhhHHHHHHHHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcCC
Confidence 899999999998668888889886 8999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCcceEEeecchhhccC
Q 026304 189 TETEIIGGADVYMPVCRQHYVNG 211 (240)
Q Consensus 189 ~~~~~~g~~~~y~~~c~~~~~~~ 211 (240)
++++.+||++.|.++||+||..+
T Consensus 171 ~~~i~IGg~e~Y~~~CR~c~~~~ 193 (195)
T 1w4r_A 171 KEVEVIGGADKYHSVCRLCYFKK 193 (195)
T ss_dssp CSSCCCCCTTTEEEECHHHHTC-
T ss_pred CCEEEECCCCcEEEccHHHhhcc
Confidence 99999999999999999999754
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=5.4e-30 Score=218.05 Aligned_cols=155 Identities=18% Similarity=0.136 Sum_probs=116.8
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
-++++||+++| |+++||+|++||+++|+||||||||||+ ++|+|+ .++|+++...+... .+ .
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~i~g~~~~~~~~~~-~~-~ 83 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNW-LR-R 83 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHH-HH-H
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHH-HH-h
Confidence 58999999998 7899999999999999999999999999 999997 23454432221111 11 2
Q ss_pred CCeEEEccCceecceecCcchhHH----------------------Hh---------------h----------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR----------------------QK---------------L----------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~---------------~----------~~~l~~ 107 (240)
..+|++|++.+++ .|+.+++.+. .. + +..++.
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 2589999887765 3555443220 00 0 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|||||||+ ...++++|+++. .|+|||++|||++.+ . .||++++|++ ++...|++++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTV----------K-NADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGGG----------T-TSSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEECCHHH
Confidence 999999999988 457889999884 489999999999987 5 5999999999 8887777654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 230 l 230 (247)
T 2ff7_A 230 L 230 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=8.8e-30 Score=218.93 Aligned_cols=155 Identities=19% Similarity=0.128 Sum_probs=116.3
Q ss_pred eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304 10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT 71 (240)
Q Consensus 10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~ 71 (240)
||+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++.. . ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~---~-~~ 76 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLL-QIVAGLIEPTSGDVLYDGERKKG---Y-EI 76 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCH---H-HH
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEECch---H-Hh
Confidence 68999999876 5689999999999999999999999999 9999972 34443321 1 11
Q ss_pred ccCCCeEEEccC-ceecceecCcchhHH------------------Hh--h-----------------------chhhhc
Q 026304 72 RYAIDSVVTHDG-AKLPCWALPELTSFR------------------QK--L-----------------------GDDAYA 107 (240)
Q Consensus 72 ~~~~~~~v~q~~-~~~~~~~~~~~~~~~------------------~~--~-----------------------~~~l~~ 107 (240)
+ ...+|++|++ ..+..+++.++..+. .. + ...++.
T Consensus 77 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 77 R-RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp G-GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred h-hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 2 2358999974 333334443332210 00 0 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|||||||+ +..++++|+++++ .|.|||++|||++++ ..+||++++|++ ++...|+++.
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tii~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKTVILISHDIETV----------INHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCTTT----------GGGCSEEEEEETTEEEEEEEHHH
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999988 4578999999987 499999999999999 889999999998 8887777654
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 225 ~ 225 (266)
T 2yz2_A 225 F 225 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.96 E-value=8.7e-30 Score=212.36 Aligned_cols=145 Identities=11% Similarity=0.103 Sum_probs=114.3
Q ss_pred ceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304 9 AAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID 76 (240)
Q Consensus 9 ~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~ 76 (240)
.+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+. ++|+++. ..+ ...
T Consensus 9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~------~~~-~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPIT------KVK-GKI 80 (214)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGG------GGG-GGE
T ss_pred ceEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEhh------hhc-CcE
Confidence 489999999998 8999999999999999999999999999 9999972 2343321 112 235
Q ss_pred eEEEccCceecceecCcchhHHHh-----------------h----------------------chhhhccCcEEEEcCc
Q 026304 77 SVVTHDGAKLPCWALPELTSFRQK-----------------L----------------------GDDAYAKLDVIGIDEA 117 (240)
Q Consensus 77 ~~v~q~~~~~~~~~~~~~~~~~~~-----------------~----------------------~~~l~~~p~lllLDEP 117 (240)
+|++|++.+++.+++.+++.+... + ...++.+|++||||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP 160 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP 160 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 899999888777777666544210 0 1125899999999999
Q ss_pred cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeeccee
Q 026304 118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARC 172 (240)
Q Consensus 118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~ 172 (240)
++ +..++++|+++.+ .|+|||++|||++++ ..+||+++.+..++
T Consensus 161 ts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~----------~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 161 VVAIDEDSKHKVLKSILEILK-EKGIVIISSREELSY----------CDVNENLHKYSTKI 210 (214)
T ss_dssp TTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSCCTT----------SSEEEEGGGGBC--
T ss_pred CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEeCCcc
Confidence 88 4679999999876 489999999999999 89999999876543
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=2.3e-29 Score=215.63 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=116.7
Q ss_pred ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~ 73 (240)
.+|+++||+++| |+++||+|++|++++|+||||||||||+ ++|+|+. ++|+++...+.. ..+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~G~I~i~g~~i~~~~~~-~~~- 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRN-SIR- 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGBCHH-HHH-
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCeEEEECCEEhhhcCHH-HHh-
Confidence 479999999988 6789999999999999999999999999 9999973 233333211111 112
Q ss_pred CCCeEEEccCceecceecCcchhHH----------H---h----------------------------------hchhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR----------Q---K----------------------------------LGDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------~---~----------------------------------~~~~l~ 106 (240)
...+|++|++.+++ .|+.+++.+. . . ++..++
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 23589999987765 3655443220 0 0 011258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|||||||+ ...+++.|+++. .++|||++|||++.+ . .||++++|++ ++...|+++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivtH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIAHRLSTI----------S-SAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGS----------T-TCSEEEEEETTEEEEEECHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHH----------H-hCCEEEEEECCEEEEECCHH
Confidence 9999999999988 457888888885 379999999999988 5 5999999999 888777765
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
.+
T Consensus 239 ~l 240 (260)
T 2ghi_A 239 DL 240 (260)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=99.95 E-value=3e-28 Score=201.65 Aligned_cols=179 Identities=32% Similarity=0.589 Sum_probs=144.1
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
..|.+..|.||+||||||.|++.+..+...|+++..+.+..+.|++...++++.+...++..+....++...+ ..+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i----~~~ 101 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD----LTN 101 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC----CTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH----hcC
Confidence 5799999999999999995558888888888888888877777776556777877777776666544443322 358
Q ss_pred CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304 109 LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE 187 (240)
Q Consensus 109 p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~ 187 (240)
++++++||.+|+. ++++.+.++++ .|+.||+.+.|.+|.+++|+++.+|..+||+|..|+..|..||.+++++.|+.+
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~ 180 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN 180 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEET
T ss_pred CCEEEEechhcCCHHHHHHHHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEEC
Confidence 8999999999976 68999999996 899999999999999999999999999999999999999999999999999976
Q ss_pred C------CcEEEeCCcceEEeecchhhccCc
Q 026304 188 E------TETEIIGGADVYMPVCRQHYVNGQ 212 (240)
Q Consensus 188 ~------~~~~~~g~~~~y~~~c~~~~~~~~ 212 (240)
+ ++++.+|+++.|.++||+||....
T Consensus 181 g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~~ 211 (219)
T 3e2i_A 181 GKPAKIDDPIILVGANESYEPRCRAHHIVAP 211 (219)
T ss_dssp TEECBTTCCSCCSSCCEEEEEECGGGCCCBC
T ss_pred CcccccCCCEEEECCCccEEEcCHHhhcCcc
Confidence 3 677889999999999999997653
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=3e-29 Score=226.03 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=119.3
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccC
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~ 74 (240)
..|+++||+++| |+++||+|++||+++|+||||||||||| ++|+|+. ++|+++...++... +.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~~~G~I~i~G~~i~~~~~~~~-rr- 94 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGEIQIDGVSWDSITLEQW-RK- 94 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTCSEEEEEEEESSCBTTSSCHHHH-HH-
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCeEEEECCEECCcCChHHH-hC-
Confidence 479999999999 8999999999999999999999999999 9999973 45555433332211 22
Q ss_pred CCeEEEccCceecceecCcchhHH------------Hh------------------------h----------chhhhcc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFR------------QK------------------------L----------GDDAYAK 108 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~------------~~------------------------~----------~~~l~~~ 108 (240)
..+|+||+..+|+ .++.+|+.+. .. + +..++.+
T Consensus 95 ~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 3589999998886 4665544210 00 1 1226899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++||||||++ +.++.+.|+++. .++|+|++|||++.+ ..||||++|++ ++...|+++++
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-----------~~aDri~vl~~G~i~~~g~~~el 240 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-----------LECDQFLVIEENKVRQYDSILEL 240 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-----------TTCSEEEEEETTEEEEESSHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence 99999999988 346777777653 479999999998755 66999999999 99999987654
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.95 E-value=1.1e-28 Score=207.69 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=109.4
Q ss_pred CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEE
Q 026304 8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVV 79 (240)
Q Consensus 8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v 79 (240)
..+|+++|++++| |+++||+|++|++++|+||||||||||+ ++|+|+.. ..-.+... +..+|+
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~--------g~i~~v 74 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHS--------GRISFC 74 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEEC--------SCEEEE
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCccEEEEC--------CEEEEE
Confidence 3489999999998 7899999999999999999999999999 99999732 21222211 124778
Q ss_pred EccCceecceecCcchhHH------------------H----------------------------hhchhhhccCcEEE
Q 026304 80 THDGAKLPCWALPELTSFR------------------Q----------------------------KLGDDAYAKLDVIG 113 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~~~~~------------------~----------------------------~~~~~l~~~p~lll 113 (240)
+|++.+++. ++.++..+. . .++..++.+|++||
T Consensus 75 ~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll 153 (229)
T 2pze_A 75 SQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153 (229)
T ss_dssp CSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred ecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 887766553 544433210 0 00122689999999
Q ss_pred EcCccC------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 114 IDEAQF------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 114 LDEP~~------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||||++ ...+++.+ .++. .++|||++|||++++ . .||++++|++ ++...|+++.+
T Consensus 154 LDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~ 216 (229)
T 2pze_A 154 LDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHL----------K-KADKILILHEGSSYFYGTFSEL 216 (229)
T ss_dssp EESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHH----------H-HCSEEEEEETTEEEEEECHHHH
T ss_pred EECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHH----------H-hCCEEEEEECCEEEEECCHHHH
Confidence 999988 23455542 3332 378999999999887 5 5999999999 88877776543
No 37
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=99.95 E-value=1.9e-27 Score=197.08 Aligned_cols=179 Identities=35% Similarity=0.582 Sum_probs=135.7
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
-.+|.+..+.||+||||||.+++.+..+...|+++..+.+..+.|++...++.+.+...+...+.+..++...+ ..
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~----~~ 100 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHI----TE 100 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGC----CS
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHH----hc
Confidence 46799999999999999999988888888889998888777776665444555554444444443332222211 12
Q ss_pred cCcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304 108 KLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT 186 (240)
Q Consensus 108 ~p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~ 186 (240)
+.++|++||.+++. ++++.+.++++ .|+.||++++|.+|.+++|+++.+|.++||.|..|+..|..||.+++++.|+.
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~~ 179 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLI 179 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEEe
Confidence 58999999999963 55688999887 69999999999999999999999999999999999999999999999999997
Q ss_pred CCCc------EEEeCCcceEEeecchhhccC
Q 026304 187 EETE------TEIIGGADVYMPVCRQHYVNG 211 (240)
Q Consensus 187 ~~~~------~~~~g~~~~y~~~c~~~~~~~ 211 (240)
++.+ ++.+|+++.|.++||+||...
T Consensus 180 ~g~~a~~~g~~i~iGg~e~Y~~~CR~c~~~~ 210 (214)
T 2j9r_A 180 DGEPAAFDDPIILVGASESYEPRCRHCHAVP 210 (214)
T ss_dssp TTEECCTTSCSCCCCSTTTEEEECTTTCCCC
T ss_pred CCCccccCCCEEEECCCCcEEEcchHhhcCc
Confidence 6544 788999999999999999753
No 38
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=99.94 E-value=1.2e-26 Score=190.23 Aligned_cols=177 Identities=33% Similarity=0.594 Sum_probs=135.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
.+|.++.++||+||||||.+++.+..+...|+.+..+.+..+.|++...++.+.+...+...+.+..++...+. .+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~----~~ 81 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE----ED 81 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC----TT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh----cc
Confidence 57999999999999999998788887778898888887666666554445555554444444444333333221 25
Q ss_pred CcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304 109 LDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE 187 (240)
Q Consensus 109 p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~ 187 (240)
.++|++||.+++ .++++.++++++ .|+.||++++|.++.+++|+.+..|.++||.|..|+..|..||.+++++.|+..
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~ 160 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLIN 160 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcC
Confidence 799999999996 466888999887 599999999999999999999999999999999999999899999999999876
Q ss_pred CCc------EEEeCCcceEEeecchhhcc
Q 026304 188 ETE------TEIIGGADVYMPVCRQHYVN 210 (240)
Q Consensus 188 ~~~------~~~~g~~~~y~~~c~~~~~~ 210 (240)
+.. ++.+||.+.|.++||+||..
T Consensus 161 g~~~~~~~~~v~igg~~~Y~~~Cr~~~~~ 189 (191)
T 1xx6_A 161 GKPAFYDDPVVLIGAMESYEARCRKCHVV 189 (191)
T ss_dssp TEECCTTCCCC-----EEEEEECTTTCCC
T ss_pred CCccccCCCEEEECCcCcEEEcchHhhcC
Confidence 644 78899999999999999974
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=3.5e-28 Score=205.63 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=107.6
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEc
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
+|+++|++++| ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+... +..+|++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~--------g~i~~v~Q 73 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVAIK--------GSVAYVPQ 73 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTCSEEEEEEEEEC--------SCEEEECS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEEC--------CEEEEEcC
Confidence 69999999988 7899999999999999999999999999 99999731 11122111 12467777
Q ss_pred cCceecceecCcchhHH----------------------------------------------HhhchhhhccCcEEEEc
Q 026304 82 DGAKLPCWALPELTSFR----------------------------------------------QKLGDDAYAKLDVIGID 115 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~l~~~p~lllLD 115 (240)
++.+ ...++.+++.+. ..++..++.+|++||||
T Consensus 74 ~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 74 QAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp SCCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6643 234443332110 00122368999999999
Q ss_pred CccC------hHHHHHHHH---HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 116 EAQF------FEDLYEFCC---NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 116 EP~~------~~~i~~~l~---~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
||++ ...+++.+. ++ . .|+|||++|||++.+ . .||++++|++ ++...|+++.+
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYL----------P-QVDVIIVMSGGKISEMGSYQEL 215 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTG----------G-GSSEEEEEETTEEEEEECHHHH
T ss_pred CcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHH----------H-hCCEEEEEeCCEEEEeCCHHHH
Confidence 9988 335666663 22 2 489999999999987 5 6999999999 88877776543
No 40
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=99.94 E-value=4.1e-27 Score=196.84 Aligned_cols=178 Identities=46% Similarity=0.752 Sum_probs=141.1
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
-..|.+..+.|++||||||.|++.+..+...|+++..+.+..+.|++ ..++++.+.......+....++... +.
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~-----~~ 89 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----AL 89 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHH-----HT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHH-----hc
Confidence 34699999999999999998878888888889998888877777776 5566666554444444433332222 35
Q ss_pred cCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304 108 KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE 187 (240)
Q Consensus 108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~ 187 (240)
+.+++++||.+++..+.++++.+.+ .|+.||++++|.+|.+++|+++.+|..+||.|..|+..|..||.++.++.|+..
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~ 168 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT 168 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcC
Confidence 7899999999997667777777776 799999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCcceEEeecchhhccCc
Q 026304 188 ETETEIIGGADVYMPVCRQHYVNGQ 212 (240)
Q Consensus 188 ~~~~~~~g~~~~y~~~c~~~~~~~~ 212 (240)
+++++.+|+++.|.++||+||....
T Consensus 169 ~~~~i~IGg~e~Y~~~CR~c~~~~~ 193 (234)
T 2orv_A 169 EKEVEVIGGADKYHSVCRLCYFKKA 193 (234)
T ss_dssp CCSSCCCCCTTTEEEECHHHHHC--
T ss_pred CCCEEEECCCCcEEEccHHhhhccc
Confidence 9999999999999999999997543
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.2e-27 Score=205.23 Aligned_cols=154 Identities=17% Similarity=0.082 Sum_probs=112.2
Q ss_pred eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh--cccCCCe-
Q 026304 10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD--TRYAIDS- 77 (240)
Q Consensus 10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~--~~~~~~~- 77 (240)
||+++|++++| ++++||+++ |++++|+||||||||||+ ++|+|+....-.+........ ......+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLl-k~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLL-RAISGLLPYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHH-HHHhCCCCCCcEEEECCEECcchHHhhheEE
Confidence 58899999876 678999999 999999999999999999 999997421112221110000 1122357
Q ss_pred EEEccCceecceecCcchhHHHh---------------h------------------------chhhhccCcEEEEcCcc
Q 026304 78 VVTHDGAKLPCWALPELTSFRQK---------------L------------------------GDDAYAKLDVIGIDEAQ 118 (240)
Q Consensus 78 ~v~q~~~~~~~~~~~~~~~~~~~---------------~------------------------~~~l~~~p~lllLDEP~ 118 (240)
|++|++.+ .+++.++..+... + +..++.+|++|||||||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 88998765 5566655543210 0 11258999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc-ceeeecc-eeeccCCccee
Q 026304 119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD-TVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad-~i~~l~~-~~~~~g~~~~~ 181 (240)
+ +..++++|+++. . |||++|||++++ ..+|| ++++|++ ++...|+++++
T Consensus 157 s~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~----------~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYG---K-EGILVTHELDML----------NLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGG----------GGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred cccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHH----------HHhcCceEEEEECCEEEEecCHHHH
Confidence 8 346777776653 2 999999999999 89999 9999999 88888887654
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=9.8e-28 Score=226.83 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=122.9
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
..|+++|++++| |+|+||++++||+++|+||||||||||+ ++|.|+ .++|+++...+.... |
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~g~~~~~~G~i~i~g~~i~~~~~~~~-r- 416 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLKDL-R- 416 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHH-HTTTTSSCCSEEEEEESSSBGGGBCHHHH-H-
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCcEEEECCEEcccCCHHHH-H-
Confidence 369999999998 8999999999999999999999999999 999997 346666544432221 2
Q ss_pred CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~ 106 (240)
+..+|++|++.+++. |+.+|..+.. . ++..++
T Consensus 417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 417 GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 235899999988864 6665543210 0 011258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|+|||||+ ...+.+.++++. .|+|+|++|||++.+ ..||||++|++ +++..|+++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~-----------~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTA-----------LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHH-----------TTSSEEEEEETTEEEEEECHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHH-----------HhCCEEEEEECCEEEEECCHH
Confidence 9999999999988 346888888774 489999999999987 48999999999 999999887
Q ss_pred eee
Q 026304 180 FFT 182 (240)
Q Consensus 180 ~~~ 182 (240)
++.
T Consensus 563 el~ 565 (587)
T 3qf4_A 563 ELL 565 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.94 E-value=9.6e-28 Score=226.51 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=121.2
Q ss_pred eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
.++++|++++| |+|+||++++||+++|+||||||||||+ ++|.|+ .++|+++...+... .| .
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~r-~ 415 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGS-LR-N 415 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHH-HH-H
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHH-Hh-h
Confidence 69999999998 8999999999999999999999999999 999997 34566554333222 12 2
Q ss_pred CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA 107 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~ 107 (240)
..+|++|++.+++. |+.+|..+.. .+ +..++.
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 35899999988875 6665543210 00 112589
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+|++|+|||||+ ...+.+.++++. .++|+|++|||++.+ . .||||++|++ ++...|++++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~----------~-~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTI----------T-HADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGT----------T-TCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHH
Confidence 999999999988 346778887774 478999999999988 4 5999999999 9999998876
Q ss_pred e
Q 026304 181 F 181 (240)
Q Consensus 181 ~ 181 (240)
+
T Consensus 562 l 562 (578)
T 4a82_A 562 L 562 (578)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=3.8e-27 Score=222.60 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=120.3
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.+++++|++++| ++|+||++++||+++|+||||||||||+ ++|+|+ .++|+++...+... .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~- 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDVRDYKLTN-LR- 416 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEhhhCCHHH-Hh-
Confidence 379999999998 7899999999999999999999999999 999997 24555554332221 12
Q ss_pred CCCeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDA 105 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l 105 (240)
...+|++|++.+++. |+.+|..+.. .+ +..+
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred cCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 235899999887764 5554443211 00 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|+|||||+ ...+.+.++++. +|+|+|++|||++.+ . .||+|++|++ ++...|++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~----------~-~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRLSTI----------E-QADEILVVDEGEIIERGRH 562 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEECCH
Confidence 89999999999988 346888888875 389999999999987 4 7999999999 88888887
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+++
T Consensus 563 ~~l 565 (582)
T 3b5x_A 563 ADL 565 (582)
T ss_pred HHH
Confidence 654
No 45
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.6e-27 Score=225.92 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=121.6
Q ss_pred eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304 10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI 75 (240)
Q Consensus 10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~ 75 (240)
.|+++|++++| |+|+||++++||+++|+||||||||||+ ++|.|+ .++|.++...+.... | ..
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r-~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV-NLLMRFYDVDRGQILVDGIDIRKIKRSSL-R-SS 430 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHH-HHHTTSSCCSEEEEEETTEEGGGSCHHHH-H-HH
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCeEEEECCEEhhhCCHHHH-H-hc
Confidence 59999999998 8999999999999999999999999999 999997 345665544332221 2 23
Q ss_pred CeEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhcc
Q 026304 76 DSVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAK 108 (240)
Q Consensus 76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~ 108 (240)
.++++|++.+++. |+.+|..+. .. ++..++.+
T Consensus 431 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 431 IGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred eEEEeCCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5899999888764 555443221 00 01225899
Q ss_pred CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
|++|+|||||+ ...+.+.++++. .|+|+|++||+++.+ . .||+|++|++ +++..|+++++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~----------~-~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTI----------K-NADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHH----------H-HCSEEEEECSSSEEECSCHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHHH
Confidence 99999999988 346888888875 489999999999988 4 4999999999 99999988764
Q ss_pred e
Q 026304 182 T 182 (240)
Q Consensus 182 ~ 182 (240)
.
T Consensus 577 ~ 577 (598)
T 3qf4_B 577 I 577 (598)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.93 E-value=3.8e-27 Score=222.60 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=120.5
Q ss_pred ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.+|+++|++++| |+|+||++++||+++|+||||||||||+ ++|+|+ .++|+++...+... .|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~- 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLAS-LR- 416 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHH-HH-
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccCCCCCeEEECCEEccccCHHH-HH-
Confidence 479999999988 7899999999999999999999999999 999997 24555543332211 12
Q ss_pred CCCeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDA 105 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l 105 (240)
...+|++|++.+++. |+.+|..+.. .+ +..+
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 235899999888764 6655443311 00 1125
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR 178 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~ 178 (240)
+.+|++|+|||||+ ...+.+.++++.+ |+|+|++|||++.+ . .||+|++|++ ++...|++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~----------~-~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI----------E-QADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT----------T-TCSEEEEEETTEEEEEECH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH----------H-hCCEEEEEECCEEEEecCH
Confidence 89999999999988 3468888888853 89999999999987 4 7999999999 88888887
Q ss_pred cee
Q 026304 179 AFF 181 (240)
Q Consensus 179 ~~~ 181 (240)
+++
T Consensus 563 ~~l 565 (582)
T 3b60_A 563 SEL 565 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.93 E-value=8.1e-27 Score=220.87 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=118.5
Q ss_pred EEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304 11 VTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA 74 (240)
Q Consensus 11 l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~ 74 (240)
|+++|++++| |+|+||++++||+++|+||||||||||+ ++|+|+ .++|+++...+... .| .
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~i~~~~~~~-~~-~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL-SLLLRLYDPASGTISLDGHDIRQLNPVW-LR-S 418 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH-HHHTTSSCCSEEEEEETTEETTTBCHHH-HH-H
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCEEhhhCCHHH-HH-h
Confidence 9999999988 7899999999999999999999999999 999997 34555543332221 12 2
Q ss_pred CCeEEEccCceecceecCcchhHHH-------------------------hh-------------------------chh
Q 026304 75 IDSVVTHDGAKLPCWALPELTSFRQ-------------------------KL-------------------------GDD 104 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~~~~~~~~-------------------------~~-------------------------~~~ 104 (240)
..++++|++.+++. |+.+|..+.. .+ +..
T Consensus 419 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 35899999887764 5554432210 00 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|+|||||+ ...+.+.++++.+ ++|+|++|||++.+ . .||+|++|++ ++...|+
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~----------~-~~d~i~~l~~G~i~~~g~ 564 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTI----------K-NANMVAVLDQGKITEYGK 564 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHH----------H-HSSEEEEEETTEEEEEEC
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECC
Confidence 589999999999988 3468888888864 78999999999987 4 5999999999 9888888
Q ss_pred cceee
Q 026304 178 RAFFT 182 (240)
Q Consensus 178 ~~~~~ 182 (240)
++++.
T Consensus 565 ~~~l~ 569 (595)
T 2yl4_A 565 HEELL 569 (595)
T ss_dssp SCC--
T ss_pred HHHHH
Confidence 87653
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=6.6e-27 Score=203.28 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=98.7
Q ss_pred ceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCc
Q 026304 9 AAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGA 84 (240)
Q Consensus 9 ~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~ 84 (240)
++|+++|+++.+ ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+... +..+|++|++.
T Consensus 39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~--------g~i~~v~Q~~~ 109 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHS--------GRISFCSQNSW 109 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHTTSSCEEEEEEECC--------SCEEEECSSCC
T ss_pred ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEEC--------CEEEEEeCCCc
Confidence 479999999977 9999999999999999999999999999 99999732 11112111 12477888766
Q ss_pred eecceecCcchh-----------H---------HH-------------------------hhchhhhccCcEEEEcCccC
Q 026304 85 KLPCWALPELTS-----------F---------RQ-------------------------KLGDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 85 ~~~~~~~~~~~~-----------~---------~~-------------------------~~~~~l~~~p~lllLDEP~~ 119 (240)
+++. ++.+++. . .. .++..++.+|++||||||++
T Consensus 110 l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 110 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp CCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 6553 4443321 0 00 00122689999999999988
Q ss_pred ------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304 120 ------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF 181 (240)
Q Consensus 120 ------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~ 181 (240)
+..+++.+ +++ . .|+|||++|||++.+ . .||++++|++ ++...|+++.+
T Consensus 189 ~LD~~~~~~i~~~ll~~~-~-~~~tviivtHd~~~~----------~-~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 189 YLDVLTEKEIFESCVCKL-M-ANKTRILVTSKMEHL----------K-KADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp TCCHHHHHHHHHHCCCCC-T-TTSEEEEECCCHHHH----------H-HSSEEEEEETTEEEEEECHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-h-CCCEEEEEecCHHHH----------H-cCCEEEEEECCeEEEeCCHHHH
Confidence 23455542 333 2 489999999999887 5 5999999999 88877877654
No 49
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.93 E-value=3.1e-25 Score=185.80 Aligned_cols=182 Identities=34% Similarity=0.565 Sum_probs=137.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhh-hc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA-YA 107 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l-~~ 107 (240)
.+|.++.+.||+|+||||++++.+..+...|..+..+.+..+.+ +...+..+.+..++...+.....+...+.... -.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 46999999999999999988787777777787777765544444 32223333332233333332223333221111 13
Q ss_pred cCcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304 108 KLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT 186 (240)
Q Consensus 108 ~p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~ 186 (240)
++++|++||.+++ .++++.+..+++ .|++||+++|+.++.+++|+.+..|..+||+|..|+..|..||.++.++.|..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~ 167 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKI 167 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEE
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEec
Confidence 5899999999885 467888888887 69999999999999999999999999999999999999999999999999987
Q ss_pred CCCc------EEEeCCcceEEeecchhhccCc
Q 026304 187 EETE------TEIIGGADVYMPVCRQHYVNGQ 212 (240)
Q Consensus 187 ~~~~------~~~~g~~~~y~~~c~~~~~~~~ 212 (240)
.+.. ++.+|+.+.|.++||+||....
T Consensus 168 ~g~~~~~~~~~v~iGg~~~Y~~~Cr~c~~~~~ 199 (223)
T 2b8t_A 168 DGKHADYNDDIVKIGCQEFYSAVCRHHHKVPN 199 (223)
T ss_dssp TTEECCTTSCSCCCCSTTTEEEECGGGCCCTT
T ss_pred CCCccccCCCeEEECCcceEEeeChhhhcCcc
Confidence 6543 6778999999999999997543
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=1.6e-25 Score=209.69 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=117.3
Q ss_pred CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304 8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.++++++|+++.| ++++||+|++||+++|+||||||||||+ ++|+|+. ..|. +.. . ...+|++|
T Consensus 285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~-i~~-------~-~~i~~v~Q 354 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGK-IEW-------D-LTVAYKPQ 354 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBCC-CCC-------C-CCEEEECS
T ss_pred CeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeE-EEE-------C-ceEEEEec
Confidence 3589999999998 7889999999999999999999999999 9999973 2333 211 1 12478888
Q ss_pred cCceecceecCcchhHH--H---------h---------------------------hchhhhccCcEEEEcCccC----
Q 026304 82 DGAKLPCWALPELTSFR--Q---------K---------------------------LGDDAYAKLDVIGIDEAQF---- 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~---------~---------------------------~~~~l~~~p~lllLDEP~~---- 119 (240)
+.......++.++.... . . ++..++.+|++|||||||+
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred CCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 86655555554433221 0 0 0112589999999999998
Q ss_pred --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304 120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF 181 (240)
Q Consensus 120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~ 181 (240)
+..++++|++++++.|.|||++|||++++ ..+||||++|++ .+...|+|+.+
T Consensus 435 ~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 435 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMI----------DYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeCCcceEeecCCHHHH
Confidence 45789999998754689999999999999 999999999986 34456777653
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=2.1e-25 Score=211.25 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=117.9
Q ss_pred CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEEEc
Q 026304 8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.++++++|+++.| ++++||++.+||+++|+||||||||||+ ++|+|+.. .|. +.. . ...+|++|
T Consensus 355 ~~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~-I~~-------~-~~i~~v~Q 424 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGK-VEW-------D-LTVAYKPQ 424 (607)
T ss_dssp CEEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBSC-CCC-------C-CCEEEECS
T ss_pred ceEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceE-EEE-------e-eEEEEEec
Confidence 3589999999998 7888899999999999999999999999 99999732 332 211 1 12478999
Q ss_pred cCceecceecCcchhHH--Hh-------------h-----------------------chhhhccCcEEEEcCccC----
Q 026304 82 DGAKLPCWALPELTSFR--QK-------------L-----------------------GDDAYAKLDVIGIDEAQF---- 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~-------------~-----------------------~~~l~~~p~lllLDEP~~---- 119 (240)
+......+++.++.... .. + +..++.+|++|||||||+
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred CccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH
Confidence 87655556665443321 00 0 112589999999999988
Q ss_pred --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304 120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF 181 (240)
Q Consensus 120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~ 181 (240)
+..++++|++++++.|.|||++|||++++ ..+|||+++|++ .+...|+|+.+
T Consensus 505 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 505 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMI----------DYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHHHH----------HHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEcCCcceEEecCCHHHH
Confidence 45789999998755799999999999999 999999999985 33456777653
No 52
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=99.92 E-value=4e-25 Score=179.99 Aligned_cols=176 Identities=34% Similarity=0.531 Sum_probs=133.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL 109 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p 109 (240)
+|.++.+.||+||||||++++.+..+...|+++..+.+..+.|++...+..+.+.......+.+...+...+ ..++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~----~~~~ 77 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI----EEDT 77 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC----CTTE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh----cCCC
Confidence 488999999999999999867776666677777666555555544333333333222222222222222111 1368
Q ss_pred cEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccC-CcceeeeeecC
Q 026304 110 DVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCG-KRAFFTLRKTE 187 (240)
Q Consensus 110 ~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g-~~~~~~~~~~~ 187 (240)
++|++||.++. .++.+.++.+++ .+..|++++++.++.+++|+....|..+||.+..|+..|..|| .++.++.|+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~-~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~ 156 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD-RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG 156 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH-TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSS
T ss_pred CEEEEECcccCCHHHHHHHHHHHH-CCCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcC
Confidence 89999999986 468888888887 5999999999999999999999999999999999999888899 99999999999
Q ss_pred CCcEEEeCCcceEEeecchhhcc
Q 026304 188 ETETEIIGGADVYMPVCRQHYVN 210 (240)
Q Consensus 188 ~~~~~~~g~~~~y~~~c~~~~~~ 210 (240)
+++++.+|+.+.|.++||+||..
T Consensus 157 ~~~~~~ig~~~~Y~~~cr~~~~~ 179 (184)
T 2orw_A 157 GEEEIDVGGQEKYIAVCRDCYNT 179 (184)
T ss_dssp CSCSCCCCSTTTEEEECHHHHHH
T ss_pred CCCEEEECCCCcEEEccHHHHhh
Confidence 99999999999999999999964
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.9e-24 Score=202.20 Aligned_cols=144 Identities=15% Similarity=0.044 Sum_probs=104.7
Q ss_pred CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304 8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH 81 (240)
Q Consensus 8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q 81 (240)
.++++++++++.| +..+||++++||+++|+||||||||||+ ++|+|+. ..|. +... . ...++++|
T Consensus 267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~------~-~~i~~~~q 337 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFA-RILVGEITADEGS-VTPE------K-QILSYKPQ 337 (538)
T ss_dssp CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSBCC-EESS------C-CCEEEECS
T ss_pred cceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEEC------C-eeeEeech
Confidence 3579999999998 7788999999999999999999999999 9999972 2232 1110 0 01244444
Q ss_pred cCceecceecCcchhH---------------------------------------HHhhchhhhccCcEEEEcCccC---
Q 026304 82 DGAKLPCWALPELTSF---------------------------------------RQKLGDDAYAKLDVIGIDEAQF--- 119 (240)
Q Consensus 82 ~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~~~p~lllLDEP~~--- 119 (240)
........++.++... ...++..++.+|++|||||||+
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 3222112222221111 0011233689999999999988
Q ss_pred ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+.+++++|++++++.|.|||++|||++++ ..+||||++|++
T Consensus 418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~----------~~~aDri~vl~~ 461 (538)
T 3ozx_A 418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIH----------DYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 45789999999865799999999999999 999999999986
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.91 E-value=4.1e-25 Score=224.47 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=121.3
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++|++++| |+|+||++++||+++|+||||||||||+ ++|.|+ .++|.++...+.... |.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~g~~~~~~G~i~i~g~~i~~~~~~~~-r~ 464 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLDGMVSIDGQDIRTINVRYL-RE 464 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH-HHTTTSSCCSEEEEEETTEEGGGSCHHHH-HH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEHHhCCHHHH-Hh
Confidence 59999999998 8899999999999999999999999999 999997 346666554433222 22
Q ss_pred CCCeEEEccCceecceecCcchhHHHh----------------------h-------------------------chhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~l~ 106 (240)
..++++|++.+++. |+.+|..+... + +..++
T Consensus 465 -~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 465 -IIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp -HEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred -heEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 25899999988876 67666544210 0 11258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|+|||||+ ...+.+.++++. .|+|+|++||+++.+ .. ||+|++|++ +++..|+++
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i----------~~-~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTV----------RN-ADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHH----------TT-CSEEEECSSSCCCCEECHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------Hc-CCEEEEEECCEEEEECCHH
Confidence 8999999999998 235666666654 489999999999998 54 999999999 999899876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
++
T Consensus 610 ~l 611 (1284)
T 3g5u_A 610 EL 611 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=2.4e-25 Score=226.68 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++||+++| |+|+||+|++||.+||+||||||||||+ ++|.|+ .++|.++..++.... |
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~-~lL~rl~~p~~G~I~iDG~di~~i~~~~l-R- 1152 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTLGGEIFIDGSEIKTLNPEHT-R- 1152 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH-HHHTTSSCCSSSEEEETTEETTTBCHHHH-H-
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH-HHHhcCccCCCCEEEECCEEhhhCCHHHH-H-
Confidence 69999999999 8999999999999999999999999999 999997 457777766544322 2
Q ss_pred CCCeEEEccCceecceecCcchhH------------HH------------hh-------------------------chh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSF------------RQ------------KL-------------------------GDD 104 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~------------~~------------~~-------------------------~~~ 104 (240)
+..++|+|++.+|+. |+.+|..+ .. .+ ++.
T Consensus 1153 ~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 235899999998875 45444211 00 00 122
Q ss_pred hhccCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++++|++|+|||||+ . ..+.+.|+++. .++|+|+++|.++.+ ..||||++|++ +++.+|+
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi-----------~~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTV-----------MNADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTT-----------TTCSEEEEESSSSEEEEEC
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHH-----------HhCCEEEEEECCEEEEECC
Confidence 689999999999998 2 24556665553 489999999999987 67999999999 9999999
Q ss_pred cceeee
Q 026304 178 RAFFTL 183 (240)
Q Consensus 178 ~~~~~~ 183 (240)
++++..
T Consensus 1299 h~eLl~ 1304 (1321)
T 4f4c_A 1299 HTQLMS 1304 (1321)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987654
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=5.7e-25 Score=223.44 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=120.1
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.++++|++++| |+|+||+|++||+++|+||||||||||+ ++|.|+ .++|.++...+... .|
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~-~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r- 1106 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMAGSVFLDGKEIKQLNVQW-LR- 1106 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHH-HHHTTSSCCSEEEEESSSSCTTSSCHHH-HT-
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEcccCCHHH-HH-
Confidence 59999999998 8899999999999999999999999999 999997 35676665443322 22
Q ss_pred CCCeEEEccCceecceecCcchhHH---------------H---------hh-------------------------chh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFR---------------Q---------KL-------------------------GDD 104 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------------~---------~~-------------------------~~~ 104 (240)
...+|++|++.+++. |+.+|..+. . .+ +..
T Consensus 1107 ~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TSCEEEESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred hceEEECCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 336999999877653 444333110 0 00 112
Q ss_pred hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304 105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
++.+|++|+|||||+ ...+.+.|++. . .|+|||++|||++.+ . .||||++|++ +++..|+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i----------~-~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTI----------Q-NADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGG----------G-SCSEEEEEETBEEEEEEC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECC
Confidence 589999999999998 34677777765 3 589999999999988 4 4999999999 9998998
Q ss_pred cceee
Q 026304 178 RAFFT 182 (240)
Q Consensus 178 ~~~~~ 182 (240)
++++.
T Consensus 1253 ~~~l~ 1257 (1284)
T 3g5u_A 1253 HQQLL 1257 (1284)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 57
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=9e-25 Score=222.51 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=123.7
Q ss_pred eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304 10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY 73 (240)
Q Consensus 10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~ 73 (240)
.|+++|++|+| |+|+||+|++|+.++|+||+|||||||+ ++|.|+ .++|.++..++.... |
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll-~ll~~~~~~~~G~I~idG~~i~~~~~~~l-r- 491 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII-SLLLRYYDVLKGKITIDGVDVRDINLEFL-R- 491 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHH-H-
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH-HHhccccccccCcccCCCccchhccHHHH-h-
Confidence 59999999999 8999999999999999999999999999 999997 356766655543322 2
Q ss_pred CCCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhh
Q 026304 74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAY 106 (240)
Q Consensus 74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~ 106 (240)
...+||+|++.+|+. |+.+|..+.. .+ ++.++
T Consensus 492 ~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcccccCCcceeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 235899999998875 5655543310 00 12258
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++|||||||+ ...+.+.|.++.+ |+|+|++||++..+ +.||+|++|++ +++..|+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i-----------~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTI-----------RNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTT-----------TTCSEEEEEETTEEEEEECHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHH-----------HhCCEEEEeeCCeeeccCCHH
Confidence 9999999999988 2357778877764 89999999999987 78999999999 999999877
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
++
T Consensus 638 eL 639 (1321)
T 4f4c_A 638 AL 639 (1321)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=1.2e-23 Score=199.22 Aligned_cols=148 Identities=18% Similarity=0.097 Sum_probs=102.5
Q ss_pred eEEE--------cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCce------------
Q 026304 10 AVTT--------NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRN------------ 61 (240)
Q Consensus 10 ~l~~--------~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~------------ 61 (240)
+|++ +|++++| ++++| ++++||+++|+||||||||||+ ++|+|+. ..|..
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLl-kiL~Gll~p~~G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAV-KILAGQLIPNLCEDNDSWDNVIRAFR 160 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHH-HHHhCCCCCCCCccccccchhhheeC
Confidence 5788 8999988 78999 9999999999999999999999 9999973 23431
Q ss_pred ---EEeeccchhcccCCCeEEEccCceecc---eecCcch----------hHHHh-----------------------hc
Q 026304 62 ---IAMIKSSKDTRYAIDSVVTHDGAKLPC---WALPELT----------SFRQK-----------------------LG 102 (240)
Q Consensus 62 ---i~~~~~~~~~~~~~~~~v~q~~~~~~~---~~~~~~~----------~~~~~-----------------------~~ 102 (240)
+..............++++|.....+. .++.++. .+... ++
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence 100000000011123566664322111 1221111 11111 12
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
..++.+|++|||||||+ +..++++|+++.+ .|.|||++|||++++ ..+||||++|++
T Consensus 241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~----------~~~adri~vl~~ 303 (607)
T 3bk7_A 241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVL----------DYLSDVIHVVYG 303 (607)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEES
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHH----------HhhCCEEEEECC
Confidence 33689999999999988 4578999999987 699999999999999 899999999976
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-23 Score=198.82 Aligned_cols=148 Identities=19% Similarity=0.051 Sum_probs=106.1
Q ss_pred cceeEee------ecCCCCcccCc-----EEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304 14 NQVNSGR------DRVGLPHRNSG-----EIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT 80 (240)
Q Consensus 14 ~~ls~~~------l~~vsl~i~~G-----e~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~ 80 (240)
++++++| ++++||++.+| |+++|+||||||||||+ ++|+|+. ..|..+. +. ..++++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl~~p~~G~~~~--------~~-~i~~~~ 419 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGALKPDEGQDIP--------KL-NVSMKP 419 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTSSCCSBCCCCC--------SC-CEEEEC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcCCCCCCCcCcc--------CC-cEEEec
Confidence 4566665 78999999999 77999999999999999 9999973 3454210 11 135666
Q ss_pred ccCceecceecCcchhH---------------HH-----------------------hhchhhhccCcEEEEcCccC---
Q 026304 81 HDGAKLPCWALPELTSF---------------RQ-----------------------KLGDDAYAKLDVIGIDEAQF--- 119 (240)
Q Consensus 81 q~~~~~~~~~~~~~~~~---------------~~-----------------------~~~~~l~~~p~lllLDEP~~--- 119 (240)
|........++.++... .. .++..++.+|++|||||||+
T Consensus 420 q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD 499 (608)
T 3j16_B 420 QKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499 (608)
T ss_dssp SSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred ccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 65332222222221100 00 01233689999999999988
Q ss_pred ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304 120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF 181 (240)
Q Consensus 120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~ 181 (240)
+.+++++|+++.++.|.|||++|||++++ ..+||||++|++ ++...|+|+.+
T Consensus 500 ~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~----------~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 500 SEQRIICSKVIRRFILHNKKTAFIVEHDFIMA----------TYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEECEEETTTEEECCCCEEH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCCeEEecCChHHH
Confidence 45788999998754699999999999999 999999999985 56778888653
No 60
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=2.7e-23 Score=194.54 Aligned_cols=147 Identities=15% Similarity=0.046 Sum_probs=99.5
Q ss_pred EEE-cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCce---------------EEeec
Q 026304 11 VTT-NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRN---------------IAMIK 66 (240)
Q Consensus 11 l~~-~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~---------------i~~~~ 66 (240)
.++ +||+++| ++++| +|++||+++|+||||||||||+ |+|+|+. ..|.. +....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLl-k~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAV-KILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 455 6899998 78999 9999999999999999999999 9999973 23431 10000
Q ss_pred cchhcccCCCeEEEccCceecce---ecCcch----------hHHHh-----------------------hchhhhccCc
Q 026304 67 SSKDTRYAIDSVVTHDGAKLPCW---ALPELT----------SFRQK-----------------------LGDDAYAKLD 110 (240)
Q Consensus 67 ~~~~~~~~~~~~v~q~~~~~~~~---~~~~~~----------~~~~~-----------------------~~~~l~~~p~ 110 (240)
..........++++|.....+.. ++.++. ..... ++..++.+|+
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~ 178 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNAT 178 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 00000111235666643222211 221111 01111 1223689999
Q ss_pred EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+|||||||+ +..++++|+++++ .|.|||++|||++++ ..+||||++|++
T Consensus 179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~----------~~~~dri~vl~~ 233 (538)
T 1yqt_A 179 FYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVL----------DYLSDIIHVVYG 233 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhCCEEEEEcC
Confidence 999999988 4578999999987 699999999999999 999999999976
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=8.8e-23 Score=200.68 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=102.5
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccC-
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG- 83 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~- 83 (240)
.|...|++++| |+++||++++|++++|+||||||||||+ |+|+|-.+.|.+. .. ..+ .+|++|+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLL-k~LagG~i~g~~~-----~~--~~~-~~~v~q~~~ 505 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLM-RAIANGQVDGFPT-----QE--ECR-TVYVEHDID 505 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHHTCSTTCCC-----TT--TSC-EEETTCCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcc-----cc--cee-EEEEccccc
Confidence 46667999998 8999999999999999999999999999 9998533333221 00 011 23444432
Q ss_pred ceecceecCcchhH------------HHh------------------------hchhhhccCcEEEEcCccC------hH
Q 026304 84 AKLPCWALPELTSF------------RQK------------------------LGDDAYAKLDVIGIDEAQF------FE 121 (240)
Q Consensus 84 ~~~~~~~~~~~~~~------------~~~------------------------~~~~l~~~p~lllLDEP~~------~~ 121 (240)
.+++.+++.++..+ ... +...++.+|++|||||||+ +.
T Consensus 506 ~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~ 585 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585 (986)
T ss_dssp CCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred ccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence 23333333322110 000 1223689999999999988 34
Q ss_pred HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcc
Q 026304 122 DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRA 179 (240)
Q Consensus 122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~ 179 (240)
.+.++|++ .|.|||++|||++++ ..+||++++|++ ++. +.|+++
T Consensus 586 ~l~~~L~~----~g~tvIivSHdl~~l----------~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 586 WLVNYLNT----CGITSITISHDSVFL----------DNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp HHHHHHHH----SCSEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHh----CCCEEEEEECCHHHH----------HHhCCEEEEEECCeeecCCCCHH
Confidence 56666655 489999999999999 899999999998 775 456543
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=6.9e-22 Score=194.36 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=44.4
Q ss_pred CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLL-klLaGl 722 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI-NVLTGE 722 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHH-HHHTTS
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 3589999999988 7899999999999999999999999999 999997
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=6.7e-22 Score=189.50 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred hhccCc--EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAKLD--VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~p~--lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
++.+|+ +|||||||+ ...++++|+++++ .|.|||+||||++++ ..||++++| ++
T Consensus 217 L~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~ii~l~~g~~~~~ 284 (670)
T 3ux8_A 217 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM-----------LAADYLIDIGPGAGIHG 284 (670)
T ss_dssp HHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------HHCSEEEEECSSSGGGC
T ss_pred HhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH-----------hhCCEEEEecccccccC
Confidence 678888 999999988 4589999999986 699999999999977 469999999 66
Q ss_pred -eeeccCCcce
Q 026304 171 -RCELCGKRAF 180 (240)
Q Consensus 171 -~~~~~g~~~~ 180 (240)
++++.|+++.
T Consensus 285 G~i~~~g~~~~ 295 (670)
T 3ux8_A 285 GEVVAAGTPEE 295 (670)
T ss_dssp CSEEEEECHHH
T ss_pred CEEEEecCHHH
Confidence 7887777654
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-21 Score=183.42 Aligned_cols=56 Identities=20% Similarity=0.068 Sum_probs=50.0
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++.+|++|||||||+ ...+.++|+++++ .|.|||++|||++++ ..+||||++|+.
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~----------~~~~drv~vl~~ 296 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVL----------DYLSDFVCIIYG 296 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHH----------HHHCSEEEEEES
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence 3689999999999988 3468889999876 699999999999999 999999999975
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=1.2e-21 Score=187.66 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=55.5
Q ss_pred hhccC---cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304 105 AYAKL---DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T 169 (240)
Q Consensus 105 l~~~p---~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~ 169 (240)
++.+| ++|||||||+ ..+++++|+++++ .|.|||+||||++.+ ..||||++| +
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~i~~l~~~~g~~ 625 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI-----------KTADYIIDLGPEGGDR 625 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEEESSSGGG
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH-----------HhCCEEEEecCCcCCC
Confidence 56665 6999999988 4579999999987 699999999999977 569999999 6
Q ss_pred c-eeeccCCccee
Q 026304 170 A-RCELCGKRAFF 181 (240)
Q Consensus 170 ~-~~~~~g~~~~~ 181 (240)
+ +++++|+++++
T Consensus 626 ~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 626 GGQIVAVGTPEEV 638 (670)
T ss_dssp CCEEEEEECHHHH
T ss_pred CCEEEEecCHHHH
Confidence 7 89999988765
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=1e-20 Score=177.01 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=48.8
Q ss_pred hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++.+|++|||||||+ +..+.++|+++.+ |+|||++|||++++ ..+||+|++|++
T Consensus 152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~----------~~~~d~i~vl~~ 212 (538)
T 3ozx_A 152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVL----------DYLTDLIHIIYG 212 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHH----------HhhCCEEEEecC
Confidence 3689999999999998 3468888988853 89999999999999 999999999986
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1.6e-21 Score=160.86 Aligned_cols=134 Identities=13% Similarity=0.001 Sum_probs=82.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccchhcccCCCeEEEccCceecceecCcch-
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT- 95 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~- 95 (240)
++| .++++|++++|+||||||||||+ ++|+|+.. .+ .+...++....+ ...+|++|+...++.+++.+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl-~~l~gl~~~i~~~~-~~~~~~~~~~~~-~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVV-RCLRERIPNLHFSV-SATTRAPRPGEV-DGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHH-HHHHHHSTTCEECC-CEESSCCCTTCC-BTTTBEECCHHHHHHHHHTTCEE
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHH-HHHHhhCCceEEcc-cccccCCccccc-CCCeeEecCHHHHHHHHhcCCce
Confidence 666 79999999999999999999999 99999741 11 111111111112 2247888764433322211100
Q ss_pred ---------------------------------h---H---HHhhch---hhhccCcEEEEcCccC----------hHHH
Q 026304 96 ---------------------------------S---F---RQKLGD---DAYAKLDVIGIDEAQF----------FEDL 123 (240)
Q Consensus 96 ---------------------------------~---~---~~~~~~---~l~~~p~lllLDEP~~----------~~~i 123 (240)
. + ...... .++.+|++++||||+. +.++
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l 166 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRL 166 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0 0 000011 2467899999999954 3468
Q ss_pred HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 124 YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 124 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
.++++++.++.|.|++++|||++++ ..+||||++|.
T Consensus 167 ~~~l~~l~~~~g~tvi~vtHdl~~~----------~~~~d~i~~l~ 202 (207)
T 1znw_A 167 DTARIELAAQGDFDKVVVNRRLESA----------CAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHGGGGSSEEEECSSHHHH----------HHHHHHHHC--
T ss_pred HHHHHHHhhhccCcEEEECCCHHHH----------HHHHHHHHHhc
Confidence 8888888765689999999999999 99999999885
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-21 Score=179.83 Aligned_cols=156 Identities=10% Similarity=-0.063 Sum_probs=104.8
Q ss_pred CceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC-ceEEeeccchhcccCCCeEEEccCc
Q 026304 8 PAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG-RNIAMIKSSKDTRYAIDSVVTHDGA 84 (240)
Q Consensus 8 ~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g-~~i~~~~~~~~~~~~~~~~v~q~~~ 84 (240)
.+|++++|+++.| .++||++++|++++|+||||||||||+ |+|+|+. ..| ..+..... .+. ..++++|...
T Consensus 116 ~~mi~~~nl~~~y-~~vsl~i~~Ge~v~IvGpnGsGKSTLl-r~L~Gl~~p~~G~~pI~vdg~---~~~-~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFML-EKIRMSNFEGPRVVIVGGSQTGKTSLS-RTLCSYALKFNAYQPLYINLD---PQQ-PIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHH-HHHHHHSSSCCCEEEEESTTSSHHHHH-HHHHHTTHHHHCCCCEEEECC---TTS-CSSSCSSCCE
T ss_pred cchhhhhhhhehh-hcCceEeCCCCEEEEECCCCCCHHHHH-HHHhCcccccCCceeEEEcCC---ccC-Ceeeeccchh
Confidence 4688999999886 589999999999999999999999999 9999983 355 42332211 111 1245555432
Q ss_pred eec---ceecCcch-------------------------------hHH------Hhhchh--hhccCcE----EEEcC-c
Q 026304 85 KLP---CWALPELT-------------------------------SFR------QKLGDD--AYAKLDV----IGIDE-A 117 (240)
Q Consensus 85 ~~~---~~~~~~~~-------------------------------~~~------~~~~~~--l~~~p~l----llLDE-P 117 (240)
+++ .+++.++. .+. ..++.. ++.+|++ ||||| |
T Consensus 190 l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 190 ATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp EEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 211 11111110 000 011334 7899999 99999 8
Q ss_pred cC-hHHHHHHHHHHHhcCCCEEEEEecChh------hhhcccchHHHHHhhccc-----eeeec-c-eeeccCCcce
Q 026304 118 QF-FEDLYEFCCNAADHDGKTVVVAGLDGD------YLRRSFGSVLDIIPLADT-----VTKLT-A-RCELCGKRAF 180 (240)
Q Consensus 118 ~~-~~~i~~~l~~l~~~~g~tvi~vtHd~~------~~~~~f~~~~~L~~~ad~-----i~~l~-~-~~~~~g~~~~ 180 (240)
++ .+.-.+.|.++.++.+.|+++++||.+ ++ ..+||+ |++|+ + +++ .|+++.
T Consensus 270 ts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~----------~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 270 ISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVK----------KTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp GGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHH----------HHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred ccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHH----------HHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 87 221145555555446889999999988 77 789999 99998 7 777 777654
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=4.8e-21 Score=153.61 Aligned_cols=120 Identities=10% Similarity=-0.051 Sum_probs=69.1
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHc------------CchhCCceEEeeccc--------hhcccCCCeEEEcc
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIR------------SESDNGRNIAMIKSS--------KDTRYAIDSVVTHD 82 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~------------gl~~~g~~i~~~~~~--------~~~~~~~~~~v~q~ 82 (240)
++||++++|++++|+||||||||||+ +++. |+............. ...+.. .++..+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~-~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 78 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFA-KKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQ-LGKLTVV 78 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHH-HHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHH-HHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHh-CCCeEEE
Confidence 68999999999999999999999999 9543 221110000000000 000000 0110100
Q ss_pred CceecceecCcchhHHHhhchhhhccCcEEEEcCccC----h------------------HHHHHHHHHHHhcCCCEEEE
Q 026304 83 GAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF----F------------------EDLYEFCCNAADHDGKTVVV 140 (240)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~----~------------------~~i~~~l~~l~~~~g~tvi~ 140 (240)
...+.. .........++..++.+|++|+||||++ . .++.+.++++.+ +|.|+|+
T Consensus 79 ~~~~~~---s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~ 154 (171)
T 4gp7_A 79 DATNVQ---ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVY 154 (171)
T ss_dssp ESCCCS---HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEE
T ss_pred ECCCCC---HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEE
Confidence 000000 0111111223455789999999999977 2 345666667776 4999999
Q ss_pred EecChhhh
Q 026304 141 AGLDGDYL 148 (240)
Q Consensus 141 vtHd~~~~ 148 (240)
+|||++++
T Consensus 155 vtH~~~~~ 162 (171)
T 4gp7_A 155 ILNSPEEV 162 (171)
T ss_dssp EECSHHHH
T ss_pred EeCCHHHh
Confidence 99999988
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.78 E-value=4.6e-19 Score=173.92 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=54.1
Q ss_pred cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeec
Q 026304 108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCEL 174 (240)
Q Consensus 108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~ 174 (240)
+|++|||||||+ ...++++|+++++ .|.|||+||||++.+ . .||+|++| ++ ++++
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i----------~-~ADrIivLgp~gg~~~G~Iv~ 893 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVI----------K-NADHIIDLGPEGGKEGGYIVA 893 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH----------T-TCSEEEEEESSSGGGCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------H-hCCEEEEecCCCCCCCCEEEE
Confidence 357999999988 4578999999987 699999999999987 4 59999999 67 8999
Q ss_pred cCCcceee
Q 026304 175 CGKRAFFT 182 (240)
Q Consensus 175 ~g~~~~~~ 182 (240)
+|+++++.
T Consensus 894 ~Gtpeel~ 901 (916)
T 3pih_A 894 TGTPEEIA 901 (916)
T ss_dssp EESHHHHH
T ss_pred EcCHHHHH
Confidence 99987643
No 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=1.5e-19 Score=151.68 Aligned_cols=158 Identities=15% Similarity=0.003 Sum_probs=89.8
Q ss_pred eEEEcceeEee--ecCCC-CcccCcEEEEEEcCCCCcHHHHHHHHHc--Cc-hhCCceEEeeccc----hhcccCCCeEE
Q 026304 10 AVTTNQVNSGR--DRVGL-PHRNSGEIHVIMGPMFAGKTTALLRRIR--SE-SDNGRNIAMIKSS----KDTRYAIDSVV 79 (240)
Q Consensus 10 ~l~~~~ls~~~--l~~vs-l~i~~Ge~~~iiGpNGsGKSTLLl~~i~--gl-~~~g~~i~~~~~~----~~~~~~~~~~v 79 (240)
|++++.++.++ |+.+- -.|++|++++|+||||||||||+ ++|+ |+ ...+..+...... ...+....++.
T Consensus 6 ~~~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 84 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFA-AQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWD 84 (251)
T ss_dssp --CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCC
T ss_pred ccccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCC
Confidence 67788888887 66552 27999999999999999999999 9998 55 3222222211110 00111112344
Q ss_pred EccCceecceecCcc---------------------hhHHHhhc-hhhhccCcEEEEcCccCh-----------HHHHHH
Q 026304 80 THDGAKLPCWALPEL---------------------TSFRQKLG-DDAYAKLDVIGIDEAQFF-----------EDLYEF 126 (240)
Q Consensus 80 ~q~~~~~~~~~~~~~---------------------~~~~~~~~-~~l~~~p~lllLDEP~~~-----------~~i~~~ 126 (240)
+|.......+++.+. ..+...+. .....+|+++++|||++. ..+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l 164 (251)
T 2ehv_A 85 FEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKL 164 (251)
T ss_dssp HHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHH
T ss_pred hHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHH
Confidence 443211111111111 11111111 112479999999999762 237778
Q ss_pred HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhc-cceeeecc
Q 026304 127 CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLA-DTVTKLTA 170 (240)
Q Consensus 127 l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~a-d~i~~l~~ 170 (240)
++.+++ .|+|||++||+++.+...+ ....+..+| |++++|+.
T Consensus 165 ~~~l~~-~g~tii~vtH~~~~~~~~~-~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 165 NTILLE-MGVTTILTTEAPDPQHGKL-SRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHH-HCCEEEEEECCC----CCS-SSSSCGGGGCSEEEEEEE
T ss_pred HHHHHH-CCCeEEEEECCCCCCcccc-cccChhhEeeeEEEEEee
Confidence 888876 6999999999988762000 001124677 99999976
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.1e-19 Score=178.37 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=54.2
Q ss_pred hhcc---CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304 105 AYAK---LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T 169 (240)
Q Consensus 105 l~~~---p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~ 169 (240)
++.+ |++|||||||+ ...++++|+++++ .|.|||++|||++++ ..||||++| +
T Consensus 878 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i-----------~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 878 LQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDVI-----------KTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEEESSSTTS
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-----------HhCCEEEEECCCcCCC
Confidence 4554 59999999988 4578999999987 699999999999987 479999999 4
Q ss_pred c-eeeccCCccee
Q 026304 170 A-RCELCGKRAFF 181 (240)
Q Consensus 170 ~-~~~~~g~~~~~ 181 (240)
+ ++++.|+++.+
T Consensus 946 ~G~Iv~~G~~~el 958 (993)
T 2ygr_A 946 GGTVVAQGTPEDV 958 (993)
T ss_dssp CSEEEEEECHHHH
T ss_pred CCEEEEecCHHHH
Confidence 5 88878877654
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2.9e-19 Score=173.96 Aligned_cols=65 Identities=22% Similarity=0.149 Sum_probs=54.5
Q ss_pred hhcc---CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304 105 AYAK---LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T 169 (240)
Q Consensus 105 l~~~---p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~ 169 (240)
++.+ |++|||||||+ ...++++|+++++ .|.|||++|||++++ ..||||++| +
T Consensus 745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~~i-----------~~aDrii~L~p~~g~~ 812 (842)
T 2vf7_A 745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQVV-----------AASDWVLDIGPGAGED 812 (842)
T ss_dssp TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSGGG
T ss_pred HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-----------HhCCEEEEECCCCCCC
Confidence 4664 79999999988 4578999999987 699999999999988 579999999 4
Q ss_pred c-eeeccCCccee
Q 026304 170 A-RCELCGKRAFF 181 (240)
Q Consensus 170 ~-~~~~~g~~~~~ 181 (240)
+ ++++.|+++.+
T Consensus 813 ~G~Iv~~g~~~el 825 (842)
T 2vf7_A 813 GGRLVAQGTPAEV 825 (842)
T ss_dssp CCSEEEEECHHHH
T ss_pred CCEEEEEcCHHHH
Confidence 5 78777777653
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=6.7e-20 Score=179.39 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred hhcc---CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304 105 AYAK---LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T 169 (240)
Q Consensus 105 l~~~---p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~ 169 (240)
++.+ |++|||||||+ ...++++|+++++ .|.|||++|||++++ ..||||++| +
T Consensus 860 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i-----------~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 860 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI-----------KTADYIIDLGPEGGDR 927 (972)
T ss_dssp HSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSTTS
T ss_pred HhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-----------HhCCEEEEEcCCCCCC
Confidence 4654 59999999988 4578999999987 699999999999987 479999999 4
Q ss_pred c-eeeccCCccee
Q 026304 170 A-RCELCGKRAFF 181 (240)
Q Consensus 170 ~-~~~~~g~~~~~ 181 (240)
+ +++..|+++.+
T Consensus 928 ~G~Iv~~g~~~el 940 (972)
T 2r6f_A 928 GGQIVAVGTPEEV 940 (972)
T ss_dssp CCSEEEEESHHHH
T ss_pred CCEEEEecCHHHH
Confidence 5 77777776543
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=1.3e-18 Score=148.86 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=90.7
Q ss_pred eEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h-CCceEEeeccchhcccCCCeEEEccCce
Q 026304 10 AVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D-NGRNIAMIKSSKDTRYAIDSVVTHDGAK 85 (240)
Q Consensus 10 ~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~ 85 (240)
.++++++++.. |+++| +++|++++|+||||||||||+ ++|.|+. . .|.-...-.+..........+++|...
T Consensus 5 ~~~l~~l~~~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll-~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~- 80 (261)
T 2eyu_A 5 IPEFKKLGLPDKVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREV- 80 (261)
T ss_dssp -CCGGGSSCCTHHHHGG--GCSSEEEEEECSTTCSHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB-
T ss_pred CCChHHCCCHHHHHHHh--hCCCCEEEEECCCCccHHHHH-HHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHh-
Confidence 56788888655 88888 999999999999999999999 9999973 2 343222211110000011234444210
Q ss_pred ecceecCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce
Q 026304 86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV 165 (240)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i 165 (240)
. .+...+...+...+..+|++|++|||+....+...++. +. .|.+|++++|+.+ + ...|||+
T Consensus 81 ----g-l~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~-~g~~vl~t~H~~~-~----------~~~~dri 142 (261)
T 2eyu_A 81 ----G-EDTKSFADALRAALREDPDVIFVGEMRDLETVETALRA-AE-TGHLVFGTLHTNT-A----------IDTIHRI 142 (261)
T ss_dssp ----T-TTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HH-TTCEEEEEECCSS-H----------HHHHHHH
T ss_pred ----C-CCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-Hc-cCCEEEEEeCcch-H----------HHHHHHH
Confidence 0 01123344455667889999999999864445555554 44 6899999999987 5 5788888
Q ss_pred eeec
Q 026304 166 TKLT 169 (240)
Q Consensus 166 ~~l~ 169 (240)
+.|.
T Consensus 143 ~~l~ 146 (261)
T 2eyu_A 143 VDIF 146 (261)
T ss_dssp HHTS
T ss_pred hhhc
Confidence 7775
No 76
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.75 E-value=4.8e-19 Score=159.99 Aligned_cols=53 Identities=17% Similarity=0.047 Sum_probs=45.2
Q ss_pred hhhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 104 DAYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 104 ~l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
.++.+| ++||||||++ ...+.+.|+++. .|.+||+||||++++ .+||++++|.
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-----------~~~d~i~~l~ 369 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-----------ARAHHHYKVE 369 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-----------TTCSEEEEEE
T ss_pred HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-----------hhcCeEEEEE
Confidence 367899 9999999988 457888888886 389999999999766 6799999994
No 77
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=6e-19 Score=146.11 Aligned_cols=117 Identities=15% Similarity=0.026 Sum_probs=69.3
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEE-eeccchhcccCCCeEEEccC--ceecc----e-ecC---cch
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIA-MIKSSKDTRYAIDSVVTHDG--AKLPC----W-ALP---ELT 95 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~-~~~~~~~~~~~~~~~v~q~~--~~~~~----~-~~~---~~~ 95 (240)
+++|++++|+||||||||||+ ++|+|+.. .|.-.. .............+|++|+. .+... . .+. ...
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLA-MAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHH-HHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred ccCCCEEEEECCCCCCHHHHH-HHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 489999999999999999999 99999822 232110 01101011122357888864 11000 0 000 000
Q ss_pred ---hHHHh---------hchhhhccCcEEEEcCccC--hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 96 ---SFRQK---------LGDDAYAKLDVIGIDEAQF--FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 96 ---~~~~~---------~~~~l~~~p~lllLDEP~~--~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.+... +...++.+|++|||||||+ +..++++|+++ + .|+||| +|||++++
T Consensus 98 ~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~-~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 98 VIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-G-FGSKMV-VTGDITQV 161 (208)
T ss_dssp HHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-C-TTCEEE-EEEC----
T ss_pred HHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-c-CCCEEE-EECCHHHH
Confidence 01111 1234689999999999988 56788888887 5 689999 99999877
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=2.3e-19 Score=148.61 Aligned_cols=151 Identities=13% Similarity=-0.006 Sum_probs=85.0
Q ss_pred eEEEcceeEee--ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304 10 AVTTNQVNSGR--DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 10 ~l~~~~ls~~~--l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~ 78 (240)
|++++.++.++ |+.+ .--+++|++++|+||||||||||+ ++|+|.. ..+..+........... ..++
T Consensus 1 ~~~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll-~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~ 78 (231)
T 4a74_A 1 MATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIRE 78 (231)
T ss_dssp -CCCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHH
T ss_pred CCcCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHH
Confidence 35667777777 5432 247999999999999999999999 9998842 13333322211100000 0112
Q ss_pred EEccCceecceecCcch------------hHHHhhchhh-------hccCcEEEEcCccCh------------------H
Q 026304 79 VTHDGAKLPCWALPELT------------SFRQKLGDDA-------YAKLDVIGIDEAQFF------------------E 121 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~------------~~~~~~~~~l-------~~~p~lllLDEP~~~------------------~ 121 (240)
++|...+.+. ++.++. .....+ ..+ ..+|++|++|||++. .
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~ 156 (231)
T 4a74_A 79 IAQNRGLDPD-EVLKHIYVARAFNSNHQMLLVQQA-EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 156 (231)
T ss_dssp HHHHTTSCHH-HHHHTEEEEECCSHHHHHHHHHHH-HHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred HHHHcCCCHH-HHhhcEEEEecCChHHHHHHHHHH-HHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence 2332222211 111110 000111 011 358999999999772 1
Q ss_pred HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 122 DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++.|.+++++.|+|||++||+.+. ....+..+||+++.|+.
T Consensus 157 ~~~~~l~~~~~~~g~tvi~vtH~~~~------~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 157 KHLADLHRLANLYDIAVFVTNQVQAN------GGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC---------------CCSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeecccC------cchhhHhhceEEEEEEe
Confidence 46777777766579999999996554 01112789999999975
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=1.8e-18 Score=161.42 Aligned_cols=159 Identities=10% Similarity=-0.045 Sum_probs=96.7
Q ss_pred ceEEEcceeEee-----ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHH--HcCchh-CCceEEeeccc----hhcccCC
Q 026304 9 AAVTTNQVNSGR-----DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRR--IRSESD-NGRNIAMIKSS----KDTRYAI 75 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~--i~gl~~-~g~~i~~~~~~----~~~~~~~ 75 (240)
++++.+++.+.. |+++|| .+++|++++|+||||||||||+ ++ ++|+.. ....+...... ...+...
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence 356666665543 899999 9999999999999999999999 88 678743 22222221111 0111112
Q ss_pred CeEEEccCce---ecceecC---------cchhHH---Hhhchhh-hccCcEEEEcCccC-----------hHHHHHHHH
Q 026304 76 DSVVTHDGAK---LPCWALP---------ELTSFR---QKLGDDA-YAKLDVIGIDEAQF-----------FEDLYEFCC 128 (240)
Q Consensus 76 ~~~v~q~~~~---~~~~~~~---------~~~~~~---~~~~~~l-~~~p~lllLDEP~~-----------~~~i~~~l~ 128 (240)
.++++|+... +...... +...+. .+....+ -.+|++++||||++ +.+++++++
T Consensus 90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~ 169 (525)
T 1tf7_A 90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 169 (525)
T ss_dssp GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3667765321 1111111 111121 1111222 36899999999975 246888998
Q ss_pred HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
++++ .|+|||++||+++++.. +..-..+..+||+|++|++
T Consensus 170 ~l~~-~g~tvl~itH~~~~~~~-~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 170 RLKQ-IGATTVMTTERIEEYGP-IARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp HHHH-HTCEEEEEEECSSSSSC-SSTTSCHHHHCSEEEEEEE
T ss_pred HHHH-CCCEEEEEecCCCCccc-cccccceeeeeeEEEEEEE
Confidence 9887 69999999999987310 0000001466999999988
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=2.1e-18 Score=152.26 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=86.8
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhc---ccCCCeEEEccCceecceecCcchh
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTS 96 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~ 96 (240)
++++||.+++|++++|+||||||||||+ ++|.|+.. ....+......... .....+++++ ....
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll-~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----------gg~~ 228 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----------GNIT 228 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHH-HHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-----------TTBC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-----------CChh
Confidence 5678999999999999999999999999 99999732 22233322211100 0001122221 2233
Q ss_pred HHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 97 FRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 97 ~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
....+...+..+|++|++|||++ .++.+.|+.+.. .+.|+++++|+++ + ...|||++.|..
T Consensus 229 ~r~~la~aL~~~p~ilildE~~~-~e~~~~l~~~~~-g~~tvi~t~H~~~-~----------~~~~dri~~l~~ 289 (330)
T 2pt7_A 229 SADCLKSCLRMRPDRIILGELRS-SEAYDFYNVLCS-GHKGTLTTLHAGS-S----------EEAFIRLANMSS 289 (330)
T ss_dssp HHHHHHHHTTSCCSEEEECCCCS-THHHHHHHHHHT-TCCCEEEEEECSS-H----------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCEEEEcCCCh-HHHHHHHHHHhc-CCCEEEEEEcccH-H----------HHHhhhheehhc
Confidence 33444556788999999999998 456778877764 4568999999998 6 688999999876
No 81
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.71 E-value=5.7e-18 Score=168.32 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=91.6
Q ss_pred CceEEEcc-----eeEee------ecCCCCcccC-------cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch
Q 026304 8 PAAVTTNQ-----VNSGR------DRVGLPHRNS-------GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK 69 (240)
Q Consensus 8 ~~~l~~~~-----ls~~~------l~~vsl~i~~-------Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~ 69 (240)
.++|++++ |++.| ++|++|++++ |++++|+||||||||||| |++ |+..-
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlL-r~i-Gl~~~----------- 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLM-RQA-GLLAV----------- 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHH-HHH-HHHHH-----------
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHH-HHH-HHHHH-----------
Confidence 35799999 88765 7899999987 999999999999999999 999 86320
Q ss_pred hcccCCCeEEEccCc-------eecceecCcch-----hHHHh-----hchhhhccCcEEEEcCccC----h---HHHHH
Q 026304 70 DTRYAIDSVVTHDGA-------KLPCWALPELT-----SFRQK-----LGDDAYAKLDVIGIDEAQF----F---EDLYE 125 (240)
Q Consensus 70 ~~~~~~~~~v~q~~~-------~~~~~~~~~~~-----~~~~~-----~~~~l~~~p~lllLDEP~~----~---~~i~~ 125 (240)
.. ....+|||... ++..+...+.. .+... ....++.+|+++|||||+. . ..++.
T Consensus 815 ~a--qiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~ 892 (1022)
T 2o8b_B 815 MA--QMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANA 892 (1022)
T ss_dssp HH--TTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred Hh--heeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence 00 01124443321 11111111110 11111 1123578999999999965 2 23678
Q ss_pred HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceee--ccCCc
Q 026304 126 FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCE--LCGKR 178 (240)
Q Consensus 126 ~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~--~~g~~ 178 (240)
+++.+.++.|.++|++||+.+++ ..+||++.+++.++. ..|.+
T Consensus 893 il~~L~~~~g~~vl~~TH~~el~----------~~~~d~~~v~~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 893 VVKELAETIKCRTLFSTHYHSLV----------EDYSQNVAVRLGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHTSCCEEEEECCCHHHH----------HHTSSCSSEEEEEEEEC-----
T ss_pred HHHHHHhcCCCEEEEEeCCHHHH----------HHhCCcceeecCeEEEEEecCc
Confidence 88888763489999999999999 889999988866443 44544
No 82
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=5.7e-17 Score=144.41 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=86.8
Q ss_pred ecCCCC-------cccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEee-ccchhcccCCCeEEEccCceeccee
Q 026304 21 DRVGLP-------HRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMI-KSSKDTRYAIDSVVTHDGAKLPCWA 90 (240)
Q Consensus 21 l~~vsl-------~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~-~~~~~~~~~~~~~v~q~~~~~~~~~ 90 (240)
++++.+ ...+|++++|+||||||||||+ ++|.|+.. .+..+... .+.........+++.|.....
T Consensus 106 l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL-~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~---- 180 (356)
T 3jvv_A 106 MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTL-AAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR---- 180 (356)
T ss_dssp TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT----
T ss_pred HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc----
Confidence 566666 6788999999999999999999 99999732 24443322 221111111124555532211
Q ss_pred cCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 91 LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
+...+...+...+.++|++|++|||+.. +..+.+.+++. .|.+|++++|+.+.+ ..|||++.|.
T Consensus 181 --~~~~~~~~La~aL~~~PdvillDEp~d~-e~~~~~~~~~~-~G~~vl~t~H~~~~~-----------~~~dRli~l~ 244 (356)
T 3jvv_A 181 --DTLGFSEALRSALREDPDIILVGEMRDL-ETIRLALTAAE-TGHLVFGTLHTTSAA-----------KTIDRVVDVF 244 (356)
T ss_dssp --TBSCHHHHHHHHTTSCCSEEEESCCCSH-HHHHHHHHHHH-TTCEEEEEESCSSHH-----------HHHHHHHHTS
T ss_pred --ccCCHHHHHHHHhhhCcCEEecCCCCCH-HHHHHHHHHHh-cCCEEEEEEccChHH-----------HHHHHHhhhc
Confidence 1233444555667899999999999863 45666666766 699999999999876 5678888773
No 83
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.67 E-value=3.3e-17 Score=161.30 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=86.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCC-CeEEEccCceecceecCcchh
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALPELTS 96 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~~~~~ 96 (240)
++|++|++++|++++|+||||||||||| |++++..+ .|.-+ +.. ....+. ..+..+.+. .... ......
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlL-r~ial~~~~aq~G~~v---pa~-~~~~~~~d~i~~~ig~-~d~l-~~~lSt 724 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYI-RQTGVIVLMAQIGCFV---PCE-SAEVSIVDCILARVGA-GDSQ-LKGVST 724 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHH-HHHHHHHHHHHHTCCB---SEE-EEEEECCSEEEEECC-----------CH
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHH-HHHHHHHHHHhcCCcc---ccc-cccchHHHHHHHhcCc-hhhH-HHhHhh
Confidence 5689999999999999999999999999 99844311 11100 000 000000 011111110 0000 000001
Q ss_pred HH---Hhhchhh--hccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304 97 FR---QKLGDDA--YAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT 164 (240)
Q Consensus 97 ~~---~~~~~~l--~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~ 164 (240)
+. ......+ +.+|+++|||||+. ...+ +.++..+.++.|.++|++||+.+.. .+||+
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-----------~lad~ 793 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-----------ALANQ 793 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-----------GGGGT
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-----------HHhcc
Confidence 10 0111122 68999999999976 2234 5666777654589999999997765 79999
Q ss_pred eeeecc-eeeccCCcceee
Q 026304 165 VTKLTA-RCELCGKRAFFT 182 (240)
Q Consensus 165 i~~l~~-~~~~~g~~~~~~ 182 (240)
+..+.+ ++...++++.+.
T Consensus 794 ~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 794 IPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CTTEEEEEEEEEEETTEEE
T ss_pred cceeEeeEEEEEecCCcEE
Confidence 999998 887777666543
No 84
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.66 E-value=2.9e-16 Score=140.33 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=47.8
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE 173 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~ 173 (240)
.+|++||||||++ ...++++|+++.+ .|.|||++|||+++. ..||++++|++ +++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~~-----------~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREFS-----------EAFDRKLRITGGVVV 363 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHHH-----------TTCSCEEEEETTEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHHH-----------HhCCEEEEEECCEEE
Confidence 5999999999988 4578888988876 699999999999876 67999999998 664
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.65 E-value=3.4e-16 Score=136.52 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=91.4
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----------hcccCCCeEEEccCc-eecc
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----------DTRYAIDSVVTHDGA-KLPC 88 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----------~~~~~~~~~v~q~~~-~~~~ 88 (240)
.++||++++|++++|+|||||||||++ +.|+|+. ..+..+....... ..+....++++|... .++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 578999999999999999999999999 9999973 2333333322110 001112478888776 6665
Q ss_pred eecCcchhHHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCC
Q 026304 89 WALPELTSFRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGK 136 (240)
Q Consensus 89 ~~~~~~~~~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~ 136 (240)
.++.++..+... +...++.+|+ +|+|| |++-.+....++++.++.|.
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~ 248 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI 248 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCC
Confidence 555554433211 0112457899 99999 98843334455667654689
Q ss_pred EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|++++||. +.....-........+.+.|.++..
T Consensus 249 t~iiiThl-D~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 249 TGLILTKL-DGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp CEEEEECC-SSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred CEEEEeCC-CCCCccChheehHHHHCCCEEEEeC
Confidence 99999993 4443322223333556677777654
No 86
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.65 E-value=4e-17 Score=158.73 Aligned_cols=135 Identities=10% Similarity=0.022 Sum_probs=84.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH-
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ- 99 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~- 99 (240)
++|++|+ ++|++++|+||||||||||| |+++|+.+.++.-...+. ...+. +++.| ++..+++.++.....
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlL-r~iagl~~~~q~G~~vpa-~~~~i---~~~~~---i~~~~~~~d~l~~~~s 668 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYM-RQTALIALMAYIGSYVPA-QKVEI---GPIDR---IFTRVGAADDLASGRS 668 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHH-HHHHHHHHHHTTTCCBSS-SEEEE---CCCCE---EEEEEC----------
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHH-HHHHHHHHHHhcCcccch-hcccc---eeHHH---HHhhCCHHHHHHhhhh
Confidence 7889999 99999999999999999999 999997442211001111 11111 22222 233333333221110
Q ss_pred -------hhc--hhhhccCcEEEEcCccC------hHH-HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc
Q 026304 100 -------KLG--DDAYAKLDVIGIDEAQF------FED-LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD 163 (240)
Q Consensus 100 -------~~~--~~l~~~p~lllLDEP~~------~~~-i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad 163 (240)
.+. -..+.+|+++|||||+. ... .+.++..+.++.|.++|++|||.+.. .+||
T Consensus 669 tf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-----------~l~d 737 (800)
T 1wb9_A 669 TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-----------QLPE 737 (800)
T ss_dssp -CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-----------GHHH
T ss_pred hhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-----------HHhh
Confidence 011 11368999999999943 223 46778888763489999999999776 5899
Q ss_pred ceeeecc-eeecc
Q 026304 164 TVTKLTA-RCELC 175 (240)
Q Consensus 164 ~i~~l~~-~~~~~ 175 (240)
++..+.+ ++...
T Consensus 738 ~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 738 KMEGVANVHLDAL 750 (800)
T ss_dssp HSTTEEEEEEEEE
T ss_pred hhhceEEEEEEEE
Confidence 8877777 55544
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.64 E-value=5e-16 Score=125.41 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceecce----------ecC-------
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW----------ALP------- 92 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~----------~~~------- 92 (240)
.++|+||||||||||+ ++|+|+. +.|......... ......++++|+......+ ...
T Consensus 2 ~i~l~G~nGsGKTTLl-~~l~g~l~i~~~g~~~~~~~~~--~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS 78 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV-KKIVERLGKRAIGFWTEEVRDP--ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ 78 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHGGGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhCCcCCCEEhhhhccc--cccceeEEEeecCcHHHHHHHhhcCCccccccccccCcC
Confidence 5899999999999999 9999963 334332211100 1112347877754111000 000
Q ss_pred cchhHHHhhchh-----hhccCcEEEEcC--ccCh-H-HHHHHHHHHHhcCCCEEEEEe---cChhhhhcccchHHHHHh
Q 026304 93 ELTSFRQKLGDD-----AYAKLDVIGIDE--AQFF-E-DLYEFCCNAADHDGKTVVVAG---LDGDYLRRSFGSVLDIIP 160 (240)
Q Consensus 93 ~~~~~~~~~~~~-----l~~~p~lllLDE--P~~~-~-~i~~~l~~l~~~~g~tvi~vt---Hd~~~~~~~f~~~~~L~~ 160 (240)
........+... ++.+|++|+||| |++. + ...+.+.++.++.+.|+|+++ ||.+++ ..
T Consensus 79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~----------~~ 148 (178)
T 1ye8_A 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV----------KE 148 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHH----------HH
T ss_pred HHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHH----------HH
Confidence 011111122343 678999999999 9872 2 344555555544677788888 488888 88
Q ss_pred hccc
Q 026304 161 LADT 164 (240)
Q Consensus 161 ~ad~ 164 (240)
+|+|
T Consensus 149 i~~r 152 (178)
T 1ye8_A 149 IRRL 152 (178)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8887
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.64 E-value=3.9e-17 Score=141.26 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=90.8
Q ss_pred EcceeE-ee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hC-CceEEeeccch---hcccCCCeEEEccCc
Q 026304 13 TNQVNS-GR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DN-GRNIAMIKSSK---DTRYAIDSVVTHDGA 84 (240)
Q Consensus 13 ~~~ls~-~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~-g~~i~~~~~~~---~~~~~~~~~v~q~~~ 84 (240)
+.+++. ++ |+++++.+++|++++|+||||||||||+ +.|+|.. .. |..+..+.... ..+.+...+..+...
T Consensus 14 ~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~ 92 (296)
T 1cr0_A 14 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFV-RQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL 92 (296)
T ss_dssp CCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHH-HHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred cCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHH-HHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh
Confidence 356666 66 8999999999999999999999999999 9998863 23 64554432111 000000000000000
Q ss_pred -e---------------------ec--ceecCc------chhHHHhh-chhhhccCcEEEEcCccC---h----------
Q 026304 85 -K---------------------LP--CWALPE------LTSFRQKL-GDDAYAKLDVIGIDEAQF---F---------- 120 (240)
Q Consensus 85 -~---------------------~~--~~~~~~------~~~~~~~~-~~~l~~~p~lllLDEP~~---~---------- 120 (240)
. +. .+.+.+ ...+..++ ...+..+|++|++|||++ .
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~ 172 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMI 172 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHH
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHH
Confidence 0 00 000000 01111111 122567999999999987 1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecCh--hhh----------hcccchHHHHHhhccceeeecc-ee
Q 026304 121 EDLYEFCCNAADHDGKTVVVAGLDG--DYL----------RRSFGSVLDIIPLADTVTKLTA-RC 172 (240)
Q Consensus 121 ~~i~~~l~~l~~~~g~tvi~vtHd~--~~~----------~~~f~~~~~L~~~ad~i~~l~~-~~ 172 (240)
.++++.|++++++.|+|||++||+. +.- -..+-.+..+..+||+|++|+. +.
T Consensus 173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 2477778888765699999999996 300 0001111233789999999987 53
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=2.8e-16 Score=129.81 Aligned_cols=147 Identities=11% Similarity=0.062 Sum_probs=82.9
Q ss_pred ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----hcccCCCeEEEccCc-----eecc
Q 026304 21 DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----DTRYAIDSVVTHDGA-----KLPC 88 (240)
Q Consensus 21 l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~-----~~~~ 88 (240)
|+++.. .+++|++++|+||||||||||+ +.+++.. ..+..+..+.... ..+....++.++... ....
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA 90 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence 778887 8999999999999999999999 8888642 2333333332111 001000111111100 0000
Q ss_pred --------eecC--cchhHHHhhch-hhhccCc--EEEEcCccC--------hHHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304 89 --------WALP--ELTSFRQKLGD-DAYAKLD--VIGIDEAQF--------FEDLYEFCCNAADHDGKTVVVAGLDGDY 147 (240)
Q Consensus 89 --------~~~~--~~~~~~~~~~~-~l~~~p~--lllLDEP~~--------~~~i~~~l~~l~~~~g~tvi~vtHd~~~ 147 (240)
.... ....+...+.. ....+|+ +|++|||++ +.++++.|++++++.|.|||+++|+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~ 170 (235)
T 2w0m_A 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT 170 (235)
T ss_dssp CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC----
T ss_pred cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 0000 11111111111 1235899 999999985 2468888888876579999999999832
Q ss_pred hhcccchHHHHHhhccceeeecc
Q 026304 148 LRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 148 ~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
-.+... ..+..+||++++|+.
T Consensus 171 ~~~~~~--~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 171 TSQAFG--FGVEHVADGIIRFRR 191 (235)
T ss_dssp ---------CHHHHCSEEEEEEE
T ss_pred cccccc--cchheeeeEEEEEEE
Confidence 000000 123889999999987
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.60 E-value=2.1e-15 Score=134.33 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=91.7
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----------hcccCCCeEEEccCc-eecc
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----------DTRYAIDSVVTHDGA-KLPC 88 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----------~~~~~~~~~v~q~~~-~~~~ 88 (240)
.++||++++|++++|+||||||||||+ +.|+|+. ..+..+....... ..+....++++|... .++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHH-HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 578999999999999999999999999 9999973 2333333322110 001112478888766 5555
Q ss_pred eecCcchhHHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCC
Q 026304 89 WALPELTSFRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGK 136 (240)
Q Consensus 89 ~~~~~~~~~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~ 136 (240)
.++.+++.+... +...++.+|+ +|+|| |++-.+....++++.+..|.
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~ 305 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI 305 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCC
Confidence 555444433211 1122467899 99999 98843334455666654689
Q ss_pred EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|+|++|| ++.....-.....+..++..|.++..
T Consensus 306 t~iiiTh-lD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 306 TGLILTK-LDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp CEEEEES-CTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred eEEEEec-CcccccccHHHHHHHHhCCCEEEEeC
Confidence 9999999 34443322222333556667766654
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.60 E-value=3.8e-16 Score=153.46 Aligned_cols=120 Identities=7% Similarity=-0.040 Sum_probs=70.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH---
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF--- 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~--- 97 (240)
++|+||++++|++++|+||||||||||| |+++++.+..+.-...+. .... +.....++..+.+.++...
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlL-r~i~~i~~~aq~g~~vpa-~~~~------i~~~d~i~~~ig~~d~l~~~~s 734 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYI-KQVALITIMAQIGSYVPA-EEAT------IGIVDGIFTRMGAADNIYKGRS 734 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHH-HHHHHHHHHHHHTCCBSS-SEEE------EECCSEEEEEC----------C
T ss_pred cccccccCCCCeEEEEECCCCCchHHHH-HHHHHHHHHhhcCccccc-hhhh------hhHHHHHHHhCChHHHHHHhHH
Confidence 6799999999999999999999999999 999875321110000111 0000 0111111222222211110
Q ss_pred --HH---hhc--hhhhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhh
Q 026304 98 --RQ---KLG--DDAYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 98 --~~---~~~--~~l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.. ... ...+.+|++||||||++ ...+. .++..+.++.|.++|++|||++.+
T Consensus 735 tfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 735 TFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 00 000 01268999999999977 22454 667777654699999999998776
No 92
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=3e-15 Score=141.89 Aligned_cols=165 Identities=14% Similarity=0.021 Sum_probs=94.5
Q ss_pred CceEEEcceeEee-------ec----------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---------hCCce
Q 026304 8 PAAVTTNQVNSGR-------DR----------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---------DNGRN 61 (240)
Q Consensus 8 ~~~l~~~~ls~~~-------l~----------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---------~~g~~ 61 (240)
+++++++|+++.| ++ +.+++++. ++|+||||||||||| ++|+|+. ++|.+
T Consensus 8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL-~~I~Gl~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVL-EALSGVALPRGSGIVTRCPLV 83 (608)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHH-HHHHSCC-------CCCSCEE
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHH-HHHhCCCCCCCCCeEEEcCEE
Confidence 4478899999998 11 23566665 999999999999999 9999973 23444
Q ss_pred EEeeccc-hhcccCCCeEEEccCceecceecCcchhHHHhh-ch--------------hhhccCcEEEEcCc------cC
Q 026304 62 IAMIKSS-KDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL-GD--------------DAYAKLDVIGIDEA------QF 119 (240)
Q Consensus 62 i~~~~~~-~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-~~--------------~l~~~p~lllLDEP------~~ 119 (240)
+...... ........++++|+..+++..++.++....... ++ .....|+++++||| ++
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------C
T ss_pred EEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 3222111 011112247889988888888888887664322 10 12457999999999 55
Q ss_pred ------hHHHHHHHHHHHh-cCCCEEEEEecChhhhhcccchHHHHHhh-----ccceeeecc-eeeccCCcc
Q 026304 120 ------FEDLYEFCCNAAD-HDGKTVVVAGLDGDYLRRSFGSVLDIIPL-----ADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 120 ------~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-----ad~i~~l~~-~~~~~g~~~ 179 (240)
..++.++++++.. ..+.++++++||++.+... ..++... ...|+++.+ ..+..|+.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE---ALSMAQEVDPEGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH---HHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH---HHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence 3578888888643 3478899999999876332 1222221 244677776 555566554
No 93
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.56 E-value=1.2e-16 Score=132.75 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=24.9
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
|++|||++++|++++|+||||||||||+ ++|.|+.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl-~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLI-KKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHH-HHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 8999999999999999999999999999 9999965
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.55 E-value=7.1e-15 Score=128.96 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce--eeec
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV--TKLT 169 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i--~~l~ 169 (240)
.+|++||||||++ ...+.++++++. .+.+||++||+++ + ..+||++ +.|.
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~----------~~~~d~~~~v~~~ 297 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-V----------MEAADLLHGVTMV 297 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-G----------GGGCSEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-H----------HhhCceEEEEEEe
Confidence 5789999999988 346888888874 4789999999965 4 5789987 5554
No 95
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.54 E-value=2e-16 Score=143.33 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred ecCCCCcccCcE--------------------EEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeE
Q 026304 21 DRVGLPHRNSGE--------------------IHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 21 l~~vsl~i~~Ge--------------------~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~ 78 (240)
+++|||++++|+ +++|+||||||||||+ ++|.|+.. .|. +....... .+ .++
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl~~p~~Gs-I~~~g~~~-t~---~~~ 112 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGIGNEEEGA-AKTGVVEV-TM---ERH 112 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTCCTTSTTS-CCCCC-----C---CCE
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCCCCccCce-EEECCeec-ce---eEE
Confidence 889999999999 9999999999999999 99999621 221 11100000 11 145
Q ss_pred EEccCceecceecCcchhH----------HHh-----------------------hchhhhc----------cCcEEEEc
Q 026304 79 VTHDGAKLPCWALPELTSF----------RQK-----------------------LGDDAYA----------KLDVIGID 115 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~----------~~~-----------------------~~~~l~~----------~p~lllLD 115 (240)
++|.. .++.+++.++..+ ... +...+.. +|+++++|
T Consensus 113 v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD 191 (413)
T 1tq4_A 113 PYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN 191 (413)
T ss_dssp EEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred ecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC
Confidence 66653 2333333322111 000 1112445 99999999
Q ss_pred CccC------hHHHHHHHHHHHh----cC----CCEEEEEecChhh--hhcccchHHHHHhhcccee
Q 026304 116 EAQF------FEDLYEFCCNAAD----HD----GKTVVVAGLDGDY--LRRSFGSVLDIIPLADTVT 166 (240)
Q Consensus 116 EP~~------~~~i~~~l~~l~~----~~----g~tvi~vtHd~~~--~~~~f~~~~~L~~~ad~i~ 166 (240)
||++ +.++++.++++.. +. ..+|++++|+++. + ..+||++.
T Consensus 192 EPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~----------e~L~d~I~ 248 (413)
T 1tq4_A 192 EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF----------PVLMDKLI 248 (413)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH----------HHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH----------HHHHHHHH
Confidence 9987 4578888887741 12 3678899999887 7 66666664
No 96
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=1.4e-14 Score=129.73 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=78.4
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDD 104 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 104 (240)
+++|++++|+||||||||||+ ++|.|+.. .|.-+..-.+.........++++|...-. +...+...+...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~------~~~~~~~~l~~~ 205 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGE------DTKSFADALRAA 205 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH-HHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTT------TBSCSHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH-HHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCC------CHHHHHHHHHHH
Confidence 789999999999999999999 99999732 34332222121111112246777731000 011122333444
Q ss_pred hhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 105 AYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 105 l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
+..+|++|++|||+....+...++. +. .|.+|++++|+.+ + ...+||++.|.
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~-~~-~g~~vi~t~H~~~-~----------~~~~~rl~~l~ 257 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRA-AE-TGHLVFGTLHTNT-A----------IDTIHRIVDIF 257 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHH-HT-TTCEEEECCCCCS-H----------HHHHHHHHHTS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHH-Hh-cCCEEEEEECcch-H----------HHHHHHHHHhc
Confidence 5679999999999875555555554 34 6899999999976 6 56777776553
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.53 E-value=2.2e-15 Score=145.86 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=69.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~ 97 (240)
++|+||+ |++++|+||||||||||| |+++|+.. .|.-+ +....+ .++++| ++..+++.++...
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlL-r~iagl~~~~~~G~~v----pa~~~~---i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFL-RQTALIALLAQVGSFV----PAEEAH---LPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHH-HHHHHHHHHHTTTCCB----SSSEEE---ECCCSE---EEEECCC------
T ss_pred eeeccCC---CcEEEEECCCCCChHHHH-HHHHhhhhhcccCcee----ehhccc---eeeHHH---hhccCCHHHHHHh
Confidence 5678887 999999999999999999 99999743 23221 111111 123332 3444444433221
Q ss_pred H--------Hhhchhh--hccCcEEEEcCc---cC-hH--HH-HHHHHHHHhcCCCEEEEEecChhhh
Q 026304 98 R--------QKLGDDA--YAKLDVIGIDEA---QF-FE--DL-YEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 98 ~--------~~~~~~l--~~~p~lllLDEP---~~-~~--~i-~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
. ..+...+ +.+|+++||||| |+ .+ .. ..++..+.+ .|.++|++||+.++.
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELT 701 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHH
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH
Confidence 1 0112233 789999999999 77 22 11 234444444 589999999998876
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=1.9e-14 Score=134.21 Aligned_cols=148 Identities=14% Similarity=0.016 Sum_probs=91.6
Q ss_pred eEEEcceeEee--ecC-CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-h----cccCCCeEEE
Q 026304 10 AVTTNQVNSGR--DRV-GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-D----TRYAIDSVVT 80 (240)
Q Consensus 10 ~l~~~~ls~~~--l~~-vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~----~~~~~~~~v~ 80 (240)
.+++++++.+| ++. ++..+++|++++|+||||||||||+ +.++|.. ..|..+..+.... . .+....++-.
T Consensus 257 ~~~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~ 335 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQLLRNAYSWGMDF 335 (525)
T ss_dssp CCCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCH
T ss_pred ccccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCH
Confidence 35677777776 554 3679999999999999999999999 9998863 3455443332111 0 0000001100
Q ss_pred c----cCce-ecc---eecCcchhHHHhhchhhhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCEEEEE
Q 026304 81 H----DGAK-LPC---WALPELTSFRQKLGDDAYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKTVVVA 141 (240)
Q Consensus 81 q----~~~~-~~~---~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~tvi~v 141 (240)
+ .+.+ +.. ..+.........+...+..+|++|++| |++ +..+.++++.+++ .|+|||++
T Consensus 336 ~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv 413 (525)
T 1tf7_A 336 EEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT 413 (525)
T ss_dssp HHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred HHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 0 0000 000 000111111111233457899999999 955 2356777777776 79999999
Q ss_pred ecCh----------hhhhcccchHHHHHhhccceeeecc
Q 026304 142 GLDG----------DYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 142 tHd~----------~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
||+. ..+ ..+||+|++|+.
T Consensus 414 sh~~~~~~~~~~~~~~l----------~~~~D~vi~L~~ 442 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHI----------STITDTIILLQY 442 (525)
T ss_dssp EECSSSSCCCSSCSSCC----------TTTCSEEEEEEE
T ss_pred ECcccccCcccccCccc----------ceeeeEEEEEEE
Confidence 9998 555 789999999987
No 99
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.50 E-value=6.3e-16 Score=141.19 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=101.2
Q ss_pred CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeecc---ch--------
Q 026304 8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKS---SK-------- 69 (240)
Q Consensus 8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~---~~-------- 69 (240)
+++++++++++.| ++++ |++.+|++++|+||||||||||+ ++|+|+.-.. ..+..... ..
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl-~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLL-GMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 3578999999988 7899 99999999999999999999999 9999973211 12222111 00
Q ss_pred --hcccCCCeEEEcc-CceecceecCcchhHHHhhchhhhccCc-EEEEc-----------------Cc--cC------h
Q 026304 70 --DTRYAIDSVVTHD-GAKLPCWALPELTSFRQKLGDDAYAKLD-VIGID-----------------EA--QF------F 120 (240)
Q Consensus 70 --~~~~~~~~~v~q~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~-lllLD-----------------EP--~~------~ 120 (240)
....+..++++|. ...++.+++.++..+....... ...+ ..++| || +. +
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~--~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~ 284 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD--RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVF 284 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHH
Confidence 0111224788884 4445555665554433221110 1122 12333 33 22 3
Q ss_pred HHHHHHHHHHHh---cCCC-----EEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 121 EDLYEFCCNAAD---HDGK-----TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 121 ~~i~~~l~~l~~---~~g~-----tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
..+.+++.++.+ +.|. ||+++|||++ . .+||+++.|.+ +++..++++.
T Consensus 285 ~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~-----------~iad~v~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 285 AKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-D-----------PIADSARAILDGHIVLSRRLAE 341 (438)
T ss_dssp HHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-C-----------HHHHHHHHHSSEEEEECHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-c-----------hhhceEEEEeCcEEEEeCCHHH
Confidence 467777777654 2364 9999999998 4 68999999999 8888877654
No 100
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.46 E-value=2.3e-13 Score=120.22 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=43.8
Q ss_pred hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
+.+|++||||||++ +..++++|+++.+ .|.+||++|||.+ + ..+||+++.|.
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~----------~~~~d~~~~l~ 327 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-L----------KDAADHVIRIS 327 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-G----------GGGCSEEEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-H----------HHhCCEEEEEE
Confidence 45899999999988 3478888888876 5889999999965 5 58899999886
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.43 E-value=6.2e-14 Score=115.01 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=80.7
Q ss_pred ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--h-cc----cCCCeEEEcc---Ccee-cc
Q 026304 21 DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--D-TR----YAIDSVVTHD---GAKL-PC 88 (240)
Q Consensus 21 l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~-~~----~~~~~~v~q~---~~~~-~~ 88 (240)
|+.+.. .+++|++++|+||||||||||+ +.+++ ..|..+..+.... . .+ ....++.++. ...+ ..
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~-~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLA-LQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTP 85 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHH-HHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECC
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHH-HHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEec
Confidence 445544 7999999999999999999999 88877 3344444433211 0 00 0000110000 0000 00
Q ss_pred eecCcchhHHHhhchhhhc-cCcEEEEcCccCh-----------H---HHHHHHHHHHhcCCCEEEEEecChhhhh----
Q 026304 89 WALPELTSFRQKLGDDAYA-KLDVIGIDEAQFF-----------E---DLYEFCCNAADHDGKTVVVAGLDGDYLR---- 149 (240)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~-~p~lllLDEP~~~-----------~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~---- 149 (240)
....+....... ...++. +|++|++|||++. . ++++.|++++++.+.+||+++|......
T Consensus 86 ~~~~~~~~~~~~-~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 86 SDFKEQRRVIGS-LKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp TTTSHHHHHHHH-HHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred CCHHHHHHHHHH-HHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 001110111111 112344 5999999999762 2 2455577777656899999999876321
Q ss_pred cccchHHHHHhhccceeeecc
Q 026304 150 RSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 150 ~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.+.. ...+..+||++++|+.
T Consensus 165 ~p~~-~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 165 KPVA-EQTLGYRCKDILRLDK 184 (220)
T ss_dssp CSCC-CHHHHHTSSEEEEEEE
T ss_pred ccCC-CcceeecCcEEEEEEE
Confidence 0111 1134789999999986
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.43 E-value=1.9e-15 Score=131.86 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=47.0
Q ss_pred eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEE
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIA 63 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~ 63 (240)
+|+++||++.| |+++||+|++|++++|+||||||||||+ ++|+|+. .|.-+.
T Consensus 101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl-~lL~gl~-~G~I~~ 156 (305)
T 2v9p_A 101 FFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLC-NSLIHFL-GGSVLS 156 (305)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHH-HHHHHHH-TCEEEC
T ss_pred eEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHH-HHHhhhc-CceEEE
Confidence 58899999998 8999999999999999999999999999 9999987 665443
No 103
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.43 E-value=8.2e-14 Score=117.37 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=25.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|+++||++++|++++|+||||||||||+ ++|+|+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~-k~L~~~ 48 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVC-EKIMEL 48 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 8999999999999999999999999999 999885
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.42 E-value=5.4e-14 Score=124.84 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=73.1
Q ss_pred cceeEee--ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----C---CceEEeeccchhcccCCCeEEEccC
Q 026304 14 NQVNSGR--DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----N---GRNIAMIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 14 ~~ls~~~--l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~---g~~i~~~~~~~~~~~~~~~~v~q~~ 83 (240)
..++.++ |+.+ ++.+++|++++|+||||||||||+ +.+++... . |..+..+......+....++++|..
T Consensus 111 ~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~-~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp CEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 3445555 5655 689999999999999999999999 88887531 1 1232222211100000012233322
Q ss_pred ceecceecCcch------------hHHHhhchhhh-------ccCcEEEEcCccCh------------------HHHHHH
Q 026304 84 AKLPCWALPELT------------SFRQKLGDDAY-------AKLDVIGIDEAQFF------------------EDLYEF 126 (240)
Q Consensus 84 ~~~~~~~~~~~~------------~~~~~~~~~l~-------~~p~lllLDEP~~~------------------~~i~~~ 126 (240)
.++.. ++.++. .....+ ..++ .+|++|++|||++. .+++..
T Consensus 190 ~~~~~-~v~~ni~~~~~~~~~~~~~~l~~~-~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~ 267 (349)
T 1pzn_A 190 GLDPD-EVLKHIYVARAFNSNHQMLLVQQA-EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD 267 (349)
T ss_dssp TCCHH-HHGGGEEEEECCSHHHHHHHHHHH-HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHH
T ss_pred CCCHH-HHhhCEEEEecCChHHHHHHHHHH-HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHH
Confidence 22111 111110 111111 1223 58999999999772 134455
Q ss_pred HHHHHhcCCCEEEEEecChhhh
Q 026304 127 CCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 127 l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
|++++++.++|||+++|+....
T Consensus 268 L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 268 LHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHcCcEEEEEccccccc
Confidence 5666665799999999998765
No 105
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.42 E-value=2.9e-14 Score=127.18 Aligned_cols=129 Identities=14% Similarity=0.035 Sum_probs=81.6
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhc---ccCCCeEEE-ccCce--ecceecCcc
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDT---RYAIDSVVT-HDGAK--LPCWALPEL 94 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~---~~~~~~~v~-q~~~~--~~~~~~~~~ 94 (240)
+++||.+++|++++|+||||||||||+ ++|.|+.- ....+..-...... .....++++ |+... +...+..++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll-~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~ 244 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLM-KALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATL 244 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHH-HHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHH
Confidence 789999999999999999999999999 99999732 22233222111100 111235676 54432 122333333
Q ss_pred hhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 95 TSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 95 ~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+. ..+..+|+.+++|||... +..+++..+.. ...|++.++|+.+ + ...++|+..+..
T Consensus 245 i~------~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~-g~~~~l~t~H~~~-~----------~~~~~Rl~~l~~ 301 (361)
T 2gza_A 245 LR------SCLRMKPTRILLAELRGG-EAYDFINVAAS-GHGGSITSCHAGS-C----------ELTFERLALMVL 301 (361)
T ss_dssp HH------HHTTSCCSEEEESCCCST-HHHHHHHHHHT-TCCSCEEEEECSS-H----------HHHHHHHHHHHT
T ss_pred HH------HHHhcCCCEEEEcCchHH-HHHHHHHHHhc-CCCeEEEEECCCC-H----------HHHHHHHHHHHh
Confidence 22 223468999999999763 45677777754 3457899999976 5 577788777655
No 106
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.41 E-value=7.7e-15 Score=128.45 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=40.1
Q ss_pred eEEEcceeEee---ecCCCCc-----------------------ccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 10 AVTTNQVNSGR---DRVGLPH-----------------------RNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 10 ~l~~~~ls~~~---l~~vsl~-----------------------i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+|++++|++.| ++++++. +++|++++|+||||||||||+ ++|.|+.
T Consensus 43 ~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~-~~L~gll 114 (312)
T 3aez_A 43 QIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA-RVLQALL 114 (312)
T ss_dssp CCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred eEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHH-HHHHhhc
Confidence 68999999999 5555543 899999999999999999999 9999974
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.40 E-value=1.5e-13 Score=111.99 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-hcccCCCeEEEccCce----ecce-----------ecCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-DTRYAIDSVVTHDGAK----LPCW-----------ALPE 93 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~~~~~~~~~v~q~~~~----~~~~-----------~~~~ 93 (240)
|++++|+||||||||||+ ++|+|+. ..|..+....... .......++++|+..- +... .+..
T Consensus 1 G~~i~i~G~nG~GKTTll-~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~ 79 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI-HKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQ 79 (189)
T ss_dssp CCCEEEESCCSSCHHHHH-HHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSS
T ss_pred CCEEEEECCCCChHHHHH-HHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccce
Confidence 789999999999999999 9999863 2231111111110 1111123677775210 0000 0010
Q ss_pred ---chhHHHhh-----ch---hhhccCcEEEEcC--ccC--hHHHHHHHHHHHhcCCCEEEE----EecChh
Q 026304 94 ---LTSFRQKL-----GD---DAYAKLDVIGIDE--AQF--FEDLYEFCCNAADHDGKTVVV----AGLDGD 146 (240)
Q Consensus 94 ---~~~~~~~~-----~~---~l~~~p~lllLDE--P~~--~~~i~~~l~~l~~~~g~tvi~----vtHd~~ 146 (240)
...-..+. .. .+..+|++||+|| |+. -..+++.|.++.+ ...++|+ ++|+.+
T Consensus 80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-TPGTIILGTIPVPKGKP 150 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-CSSCCEEEECCCCCSSC
T ss_pred EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-CCCcEEEEEeecCCCCc
Confidence 01111111 11 1367899999999 554 2357888888876 3445553 349863
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.40 E-value=4.7e-14 Score=117.47 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=67.6
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CC-ceEEeeccchhcccCCCeEEEccCceecceec----Ccch
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NG-RNIAMIKSSKDTRYAIDSVVTHDGAKLPCWAL----PELT 95 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g-~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~----~~~~ 95 (240)
.-+.++|++++|+||||||||||+ ++|.|+.. .| ..+...++....+ ...+|+||....|+.+++ .++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLl-k~L~g~~~p~~~~g~v~~ttr~~~~~e~-~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLI-QALLKTQPLYDTQVSVSHTTRQPRPGEV-HGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHH-HHHHHHSCTTTEEECCCEECSCCCTTCC-BTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHH-HHHhccCCCCceEEEEEecCCCCCcccc-cCceEEECCHHHHHHHHhcCHHHHHH
Confidence 346789999999999999999999 99999632 12 1111111111111 124788987666655444 2222
Q ss_pred hHHHhh-------chhhhccCcEEEEc-CccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 96 SFRQKL-------GDDAYAKLDVIGID-EAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 96 ~~~~~~-------~~~l~~~p~lllLD-EP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.+...+ -...+..++++||| .|....++.+.+ . .+.+|++++|+++.+
T Consensus 88 ~~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l----~-~~~tI~i~th~~~~l 143 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM----P-HARSIFILPPSKIEL 143 (219)
T ss_dssp EETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHC----T-TCEEEEEECSSHHHH
T ss_pred HHHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHc----c-CCEEEEEECCCHHHH
Confidence 211110 12246678999999 111123343333 3 489999999999887
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=3.1e-13 Score=112.47 Aligned_cols=144 Identities=14% Similarity=0.082 Sum_probs=71.8
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h------CCceEEeeccch---h----cccCCCeEEEcc---Cc-eec
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D------NGRNIAMIKSSK---D----TRYAIDSVVTHD---GA-KLP 87 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~------~g~~i~~~~~~~---~----~~~~~~~~v~q~---~~-~~~ 87 (240)
--+++|++++|+||||||||||+ +.+++.. . .+..+..+.... . .+....++.++. .. ...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 97 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYAR 97 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCcCCeEEEEECCCCCcHHHHH-HHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEe
Confidence 46899999999999999999999 8888731 1 123333322111 0 010011222221 11 111
Q ss_pred ceecCcchhHHHhhchhh-hccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 88 CWALPELTSFRQKLGDDA-YAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l-~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
..+..+.......+...+ ..+|++|++|||++. .+++..|.+++++.|+|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 111111111111111111 258999999999751 1244445566655699999999987665
Q ss_pred hc--ccc-------hHHHHHhhccceeeecc
Q 026304 149 RR--SFG-------SVLDIIPLADTVTKLTA 170 (240)
Q Consensus 149 ~~--~f~-------~~~~L~~~ad~i~~l~~ 170 (240)
.. .|. ....+..+||.+++|+.
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp -------------------CCTTCEEEEEEE
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 33 231 11124558999999875
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.38 E-value=9.2e-13 Score=105.43 Aligned_cols=104 Identities=12% Similarity=-0.051 Sum_probs=64.2
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLG 102 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~ 102 (240)
+|.+++|+.++|+||||+|||||+ +++++.. ..|..+..+........ +.....-.....+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---- 95 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEKKGIRGYFFDTKDLIFR-----------LKHLMDEGKDTKFL---- 95 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHHSCCCCCEEEHHHHHHH-----------HHHHHHHTCCSHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHH-HHHHHHHHHHcCCeEEEEEHHHHHHH-----------HHHHhcCchHHHHH----
Confidence 567888999999999999999999 9998864 23433222211100000 00000000000111
Q ss_pred hhhhccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304 103 DDAYAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
..+.+|++|+||||+. +..+.+++.+..+ .|+++|++||...
T Consensus 96 -~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 96 -KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp -HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred -HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 1246899999999974 2356677777665 6899999999764
No 111
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=4.3e-14 Score=128.20 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=50.4
Q ss_pred eEEEcceeEee----ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccC
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~ 83 (240)
.+++++ +++| ++++||++++|++ ++|+||||||||||+ ++|.|+.+.|.++....+... +. ..++++|..
T Consensus 16 ~l~~~~-~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl-n~L~G~~l~g~~~~~~~~~~~-~~-~i~~v~Q~~ 91 (427)
T 2qag_B 16 TVPLAG-HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM-DTLFNTKFEGEPATHTQPGVQ-LQ-SNTYDLQES 91 (427)
T ss_dssp -CCCCC-CC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHH-HHHHTSCC-------CCSSCE-EE-EEEEEEEC-
T ss_pred eEEEee-EEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHH-HHHhCccccCCcCCCCCccce-Ee-eEEEEeecC
Confidence 466666 7777 7899999999999 999999999999999 999999777766543322211 11 247788876
Q ss_pred ceecceecC
Q 026304 84 AKLPCWALP 92 (240)
Q Consensus 84 ~~~~~~~~~ 92 (240)
.+++.+++.
T Consensus 92 ~l~~~ltv~ 100 (427)
T 2qag_B 92 NVRLKLTIV 100 (427)
T ss_dssp -CEEEEEEE
T ss_pred ccccccchh
Confidence 655544443
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=1.4e-12 Score=102.09 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=58.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
+|+.++|+||||+|||||+ +++++... .|.++.. +..... ... .++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~g~~~~~--------------~~~~~~-~~~---------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL-QAWVAQALEAGKNAAY--------------IDAASM-PLT---------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH-HHHHHHHHTTTCCEEE--------------EETTTS-CCC---------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEE--------------EcHHHh-hHH---------------HHHhC
Confidence 8999999999999999999 99998643 2322222 111110 000 12468
Q ss_pred CcEEEEcCccC-----hHHHHHHHHHHHhcCCCE-EEEEecCh
Q 026304 109 LDVIGIDEAQF-----FEDLYEFCCNAADHDGKT-VVVAGLDG 145 (240)
Q Consensus 109 p~lllLDEP~~-----~~~i~~~l~~l~~~~g~t-vi~vtHd~ 145 (240)
|++|++|||+. ++.+++++.++.+ .|++ +|++||..
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 99999999977 3467888888776 5777 88888853
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.36 E-value=5.8e-13 Score=116.10 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=74.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch--------h----cccCCCeEEEccCceecceecCcchh
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK--------D----TRYAIDSVVTHDGAKLPCWALPELTS 96 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~--------~----~~~~~~~~v~q~~~~~~~~~~~~~~~ 96 (240)
+|++++|+||||||||||+ +.|+|+. ..+..+....... . .+. ..++++|.....+..++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~-~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRL-SIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHH-TCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999999999 9999973 2333333222110 0 112 2478898776655554444333
Q ss_pred HHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 97 FRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 97 ~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
.... +...++.+|+ ++.|| |++..++++.++++.+..|.|+|++||+
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 2110 1122456798 77888 5555567778888776458999999999
Q ss_pred hhh
Q 026304 145 GDY 147 (240)
Q Consensus 145 ~~~ 147 (240)
.+.
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 543
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=123.04 Aligned_cols=128 Identities=12% Similarity=0.063 Sum_probs=70.7
Q ss_pred ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CC---ceEEeeccchhcccCCCeE
Q 026304 9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NG---RNIAMIKSSKDTRYAIDSV 78 (240)
Q Consensus 9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g---~~i~~~~~~~~~~~~~~~~ 78 (240)
.+|+++||++.| ++++||+| +|+||||||||||+ ++|.|... .| ..+.. .+.. .....++
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLl-n~L~g~~~~~~~~~~~~~~~-~~t~--~~~~i~~ 79 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLI-NSLFLTDLYSPEYPGPSHRI-KKTV--QVEQSKV 79 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHH-HHHTTCCCCCCCCCSCC------CC--EEEEEEC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHH-HHHhCCCCCCCCCCCcccCC-ccce--eeeeEEE
Confidence 479999999998 89999997 99999999999999 99999743 22 11111 0100 1111245
Q ss_pred EEccCceecceecCcchhHHHh---------------------------hchhhhccCc---EEEEcCccC--hHHH-HH
Q 026304 79 VTHDGAKLPCWALPELTSFRQK---------------------------LGDDAYAKLD---VIGIDEAQF--FEDL-YE 125 (240)
Q Consensus 79 v~q~~~~~~~~~~~~~~~~~~~---------------------------~~~~l~~~p~---lllLDEP~~--~~~i-~~ 125 (240)
++|...++..+++.++..+... +...++.+|+ +|++|||+. .+.. .+
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~ 159 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE 159 (418)
T ss_dssp C------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHH
T ss_pred EEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHH
Confidence 5665555555566554433211 1123467899 999999973 3322 35
Q ss_pred HHHHHHhcCCCEEEEEecChhhh
Q 026304 126 FCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 126 ~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+++++. .+.+||+|.|-.+.+
T Consensus 160 ~lk~L~--~~v~iIlVinK~Dll 180 (418)
T 2qag_C 160 FMKRLH--EKVNIIPLIAKADTL 180 (418)
T ss_dssp HHHHHT--TTSEEEEEEESTTSS
T ss_pred HHHHHh--ccCcEEEEEEcccCc
Confidence 666664 378888888876654
No 115
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.36 E-value=3.3e-14 Score=126.21 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=42.6
Q ss_pred CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++++++++++.| ++++ |+|.+|++++|+||||||||||+ ++|+|+
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl-~~I~g~ 94 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLL-GMICNG 94 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence 3578999999988 7899 99999999999999999999999 999997
No 116
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=4.2e-14 Score=112.01 Aligned_cols=83 Identities=17% Similarity=0.033 Sum_probs=53.7
Q ss_pred EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCcee
Q 026304 12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL 86 (240)
Q Consensus 12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~ 86 (240)
+.+++++.| ++++||++++|++++|+||||||||||+ |+|+|+......+..........+....+++|+..++
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl-r~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLT-RGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHH-HHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHH-HHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 345666666 7899999999999999999999999999 9999964211112111000000000013678876666
Q ss_pred cceecCcchh
Q 026304 87 PCWALPELTS 96 (240)
Q Consensus 87 ~~~~~~~~~~ 96 (240)
.+++.+++.
T Consensus 88 -~ltv~e~l~ 96 (158)
T 1htw_A 88 -RLADPEELE 96 (158)
T ss_dssp -TCSCTTHHH
T ss_pred -cCCcHHHHH
Confidence 677766553
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.30 E-value=2.6e-12 Score=106.97 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=80.1
Q ss_pred ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccC----ce--ec-
Q 026304 21 DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDG----AK--LP- 87 (240)
Q Consensus 21 l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~----~~--~~- 87 (240)
|+.+ ..-+++|++++|+||||||||||+++++.+....|..+..+.... ..+....++.+|.. .+ ..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 91 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA 91 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence 4544 667999999999999999999997466555444444444432211 01111112222210 00 00
Q ss_pred ------------ce---ecCcchhHHHhhchhh-hccCcEEEEcCccCh--------HHHHHHHHHHHhcCCCEEEEEec
Q 026304 88 ------------CW---ALPELTSFRQKLGDDA-YAKLDVIGIDEAQFF--------EDLYEFCCNAADHDGKTVVVAGL 143 (240)
Q Consensus 88 ------------~~---~~~~~~~~~~~~~~~l-~~~p~lllLDEP~~~--------~~i~~~l~~l~~~~g~tvi~vtH 143 (240)
.. ...+...+...+...+ ..+|+++++|+|+.. .+.+..+.+++++.|.+|++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h 171 (247)
T 2dr3_A 92 FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ 171 (247)
T ss_dssp STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 00 0011111122221111 257999999999762 34445555555557999999999
Q ss_pred ChhhhhcccchHHHHHhhccceeeecc
Q 026304 144 DGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 144 d~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
....... +.. ..+..+||.++.|+.
T Consensus 172 ~~~~~~~-~~~-~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 172 VSVGERG-FGG-PGVEHGVDGIIRLDL 196 (247)
T ss_dssp CC----C-CC--CCHHHHSSEEEEEEE
T ss_pred CCCCccc-ccc-cccceeEEEEEEEEE
Confidence 8765311 111 124678899999976
No 118
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.27 E-value=1.3e-11 Score=113.66 Aligned_cols=126 Identities=10% Similarity=0.003 Sum_probs=77.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch---------hc--ccCCCeEEEccCceecc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK---------DT--RYAIDSVVTHDGAKLPC 88 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~---------~~--~~~~~~~v~q~~~~~~~ 88 (240)
.+++||++.+|++++|+||||||||||+ ++|+|+. ..+..+....... .. +....++++|....++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl-~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTI-GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHH-HHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 3689999999999999999999999999 9999973 3444444321110 00 11234788987666655
Q ss_pred eecCcchhHHHhh-----------------------chh--h-----hccC-cEEEEcCccChHHHHHHHHHHHhcCCCE
Q 026304 89 WALPELTSFRQKL-----------------------GDD--A-----YAKL-DVIGIDEAQFFEDLYEFCCNAADHDGKT 137 (240)
Q Consensus 89 ~~~~~~~~~~~~~-----------------------~~~--l-----~~~p-~lllLDEP~~~~~i~~~l~~l~~~~g~t 137 (240)
.++.+++.+...- ... . ...| ++||...|+.....++.++.+.+..+.|
T Consensus 362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~it 441 (503)
T 2yhs_A 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 441 (503)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCC
Confidence 5555544433210 000 0 1235 3554555766445556667766556788
Q ss_pred EEEEecChhhh
Q 026304 138 VVVAGLDGDYL 148 (240)
Q Consensus 138 vi~vtHd~~~~ 148 (240)
.+++|| ++..
T Consensus 442 gvIlTK-LD~t 451 (503)
T 2yhs_A 442 GITLTK-LDGT 451 (503)
T ss_dssp EEEEEC-GGGC
T ss_pred EEEEEc-CCCc
Confidence 888898 4443
No 119
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.24 E-value=7.6e-12 Score=107.16 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=33.4
Q ss_pred hhccCcEEEEcCccC--------h---HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 105 AYAKLDVIGIDEAQF--------F---EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 105 l~~~p~lllLDEP~~--------~---~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
++.+|++|++|||++ . .+++..|++++++.|+|||+++|+....
T Consensus 130 l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 130 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred hcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 467899999999977 1 4677888888755799999999998765
No 120
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.24 E-value=5.7e-12 Score=107.99 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh---
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL--- 101 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~--- 101 (240)
.++|+||||||||||+ ++|.|+. ++|+++ +.. .+....++++|...+++.+++.++..+....
T Consensus 4 ~v~lvG~nGaGKSTLl-n~L~g~~~~~~G~i~~~g~~i---~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV-NTLFKSQVSRKASSWNREEKI---PKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHC------------C---CCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT
T ss_pred EEEEECCCCCCHHHHH-HHHhCCCCCCCCccccCCccc---Ccc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH
Confidence 4799999999999999 9999973 223322 111 1112247888887777777776654432110
Q ss_pred -----------------------chh-----h-hccCcEEEEcCccC-h-HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 102 -----------------------GDD-----A-YAKLDVIGIDEAQF-F-EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 102 -----------------------~~~-----l-~~~p~lllLDEP~~-~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
+++ + -..+.++++|||+. . ..-.++++.+.+ . .+||++.|..+.+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-V-VNIIPVIAKADTM 153 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-T-SEEEEEETTGGGS
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-c-CcEEEEEeccccC
Confidence 010 0 11345899999966 2 123567777776 4 8899998877654
No 121
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.24 E-value=4.9e-12 Score=110.00 Aligned_cols=127 Identities=10% Similarity=-0.045 Sum_probs=60.3
Q ss_pred cceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh--CCceEEeeccchhcccCCCeEEEccCce
Q 026304 14 NQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD--NGRNIAMIKSSKDTRYAIDSVVTHDGAK 85 (240)
Q Consensus 14 ~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~--~g~~i~~~~~~~~~~~~~~~~v~q~~~~ 85 (240)
+||++.| +++++|+| +|+||||+|||||+ +.|.|. .. .|..+...+..........++++|....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl-~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHH-HHHHC------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHH-HHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence 3667776 88999988 99999999999999 998885 22 2210000000000111224677776554
Q ss_pred ecceecCcchhH-------------HH-------h-h----ch--hhhccCc---EEEEcCccC--hH-HHHHHHHHHHh
Q 026304 86 LPCWALPELTSF-------------RQ-------K-L----GD--DAYAKLD---VIGIDEAQF--FE-DLYEFCCNAAD 132 (240)
Q Consensus 86 ~~~~~~~~~~~~-------------~~-------~-~----~~--~l~~~p~---lllLDEP~~--~~-~i~~~l~~l~~ 132 (240)
...+++.+...+ .. . + ++ ..+..++ +|++|||+. ++ .-.++++++..
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~ 154 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN 154 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh
Confidence 444555443322 11 0 0 00 1123333 999999964 32 12366777765
Q ss_pred cCCCEEEEEecChhh
Q 026304 133 HDGKTVVVAGLDGDY 147 (240)
Q Consensus 133 ~~g~tvi~vtHd~~~ 147 (240)
..+.++++++||+..
T Consensus 155 ~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 155 KVNIVPVIAKADTLT 169 (301)
T ss_dssp TSCEEEEECCGGGSC
T ss_pred cCCEEEEEEeCCCCC
Confidence 457899999999853
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.20 E-value=5.6e-13 Score=109.15 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=24.0
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|++++|+||||||||||+ ++|.|+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~-~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLA-QALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHH-HHHHHH
Confidence 578999999999999999999 999985
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.18 E-value=4e-11 Score=105.53 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=75.5
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccch------------hcccCCCeEEEccCceecceecCcc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSK------------DTRYAIDSVVTHDGAKLPCWALPEL 94 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~------------~~~~~~~~~v~q~~~~~~~~~~~~~ 94 (240)
.++|++++|+|||||||||++ +.|+|+ ...+..+....... ..+.+ ..+++|.....+..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g-v~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG-VKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT-CEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC-ceEEeccccCCHHHHHHHH
Confidence 378999999999999999999 999996 23344443322110 11111 2477777666666666555
Q ss_pred hhHHHh--------------------------hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304 95 TSFRQK--------------------------LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 95 ~~~~~~--------------------------~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
+.+... +...+..++.+++||.++. .++++.++.+.+..+.+++++||.-.
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 443321 0112345777889997765 46667777777657899999999543
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.18 E-value=8.8e-12 Score=112.48 Aligned_cols=144 Identities=12% Similarity=0.079 Sum_probs=76.1
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHH--cCchh-----CCceEEeeccch-------hcccCCCeEEEcc---Ccee-c
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRI--RSESD-----NGRNIAMIKSSK-------DTRYAIDSVVTHD---GAKL-P 87 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i--~gl~~-----~g~~i~~~~~~~-------~~~~~~~~~v~q~---~~~~-~ 87 (240)
--|++|+++.|+||||||||||+ +.+ .+... .+..+..+.... ..+....++.++. ...+ .
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl-~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~ 251 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYAR 251 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCcCCCcEEEEEcCCCCChHHHH-HHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEec
Confidence 46899999999999999999999 744 33321 122222222110 0000011232221 1111 1
Q ss_pred ceecCcchhHHHhhchh-hhccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 88 CWALPELTSFRQKLGDD-AYAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
................. ...+|++|++|||++. .+++..|++++++.|+|||+++|.....
T Consensus 252 ~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~ 331 (400)
T 3lda_A 252 AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQV 331 (400)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccC
Confidence 11111111111111111 1257999999999661 3467788888876799999999985433
Q ss_pred hc--ccc-------hHHHHHhhccceeeecc
Q 026304 149 RR--SFG-------SVLDIIPLADTVTKLTA 170 (240)
Q Consensus 149 ~~--~f~-------~~~~L~~~ad~i~~l~~ 170 (240)
.. +|. ....+...+|.++.|+.
T Consensus 332 ~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 332 DGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp ----------------CHHHHHCSEEEEEEE
T ss_pred CccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 22 332 12345778899998876
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.16 E-value=4.1e-12 Score=113.11 Aligned_cols=144 Identities=9% Similarity=-0.008 Sum_probs=83.1
Q ss_pred ecCCCCcccC--cEEEEEEcCCCCcHHHHHHHHHcCchh--C----CceEE---------eeccchhcccCCCeEEEccC
Q 026304 21 DRVGLPHRNS--GEIHVIMGPMFAGKTTALLRRIRSESD--N----GRNIA---------MIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 21 l~~vsl~i~~--Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~----g~~i~---------~~~~~~~~~~~~~~~v~q~~ 83 (240)
.+.|++++.+ |+.++|+||||||||||+ ++|+|+.- . |.... ....... ...++++|..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLl-k~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~---~~I~~~~q~~ 233 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLV-NKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY---PQMALGHQRY 233 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHH-HHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH---HHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHH-HHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH---HHHHHHHHHH
Confidence 5679999999 999999999999999999 99999621 1 22110 0000000 0012333322
Q ss_pred ceecceecCcchhH----------HHhh---------chhh-hccCcEEEEcC---ccC------------hHHHHHHHH
Q 026304 84 AKLPCWALPELTSF----------RQKL---------GDDA-YAKLDVIGIDE---AQF------------FEDLYEFCC 128 (240)
Q Consensus 84 ~~~~~~~~~~~~~~----------~~~~---------~~~l-~~~p~lllLDE---P~~------------~~~i~~~l~ 128 (240)
..+. .++.+++.+ .... .... ..+|++++||| |+. +..+.+.|.
T Consensus 234 ~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~ 312 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK 312 (365)
T ss_dssp HHHH-HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred HHHH-HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence 2111 111111100 0000 0111 35899999999 631 346778887
Q ss_pred HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304 129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF 181 (240)
Q Consensus 129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~ 181 (240)
++.++.+.+|++++|. +.. .++++++..+++ +..+++++++
T Consensus 313 ~l~~~~~~~ililde~-~~~----------~r~~~~i~~i~~-~l~~~~~~~~ 353 (365)
T 1lw7_A 313 KLLDKYKVPYIEIESP-SYL----------DRYNQVKAVIEK-VLNEEEISEL 353 (365)
T ss_dssp HHHHGGGCCCEEEECS-SHH----------HHHHHHHHHHHH-HTSCCCCSSC
T ss_pred HHHHHcCCCEEEeCCC-CHH----------HHHHHHHHHHHH-HhcccchhHh
Confidence 7765458899999976 455 678888877766 2234555443
No 126
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.11 E-value=1.3e-10 Score=103.14 Aligned_cols=148 Identities=18% Similarity=0.093 Sum_probs=80.1
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh---cccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG 102 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~ 102 (240)
--+++|+++.|.||+|||||||++.++......|..+..+..... .+....++.++...+....+..+......
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~--- 132 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIAD--- 132 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHH---
Confidence 368899999999999999999984544444444555544432110 00000122122111111112222222211
Q ss_pred hhhh--ccCcEEEEcCccCh---H----------------HHHHHHHHH---HhcCCCEEEEEecChhhhhcccch----
Q 026304 103 DDAY--AKLDVIGIDEAQFF---E----------------DLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS---- 154 (240)
Q Consensus 103 ~~l~--~~p~lllLDEP~~~---~----------------~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~---- 154 (240)
.++ .+|++|++|||++. . .+.+.++++ +++.+++||+++|........|+.
T Consensus 133 -~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~ 211 (349)
T 2zr9_A 133 -MLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT 211 (349)
T ss_dssp -HHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred -HHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence 122 35999999999761 1 234455555 244799999999987655554532
Q ss_pred --HHHHHhhccceeeecc-eeeccCC
Q 026304 155 --VLDIIPLADTVTKLTA-RCELCGK 177 (240)
Q Consensus 155 --~~~L~~~ad~i~~l~~-~~~~~g~ 177 (240)
...|..+||.++.++. .....|+
T Consensus 212 ~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 212 TGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp SSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCchHhhhccceEEEEEEeeeeecCc
Confidence 3356788999888887 5544454
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.10 E-value=1.1e-11 Score=99.68 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEecC-hhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304 120 FEDLYEFCCNAADHDGKTVVVAGLD-GDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF 180 (240)
Q Consensus 120 ~~~i~~~l~~l~~~~g~tvi~vtHd-~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~ 180 (240)
+.. ++.+..+.. .+.++|.+||. ++.+ .++||+|+ ++ ++..+|+++.
T Consensus 133 ~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~----------e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 133 LEL-VEEFESKGI-DERYFYNTSHLQPTNL----------NDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp GHH-HHHHHHTTC-CTTSEEECSSSCGGGH----------HHHHHHHH--HCGGGSCC-----
T ss_pred HHH-HHHHhhcCC-CccEEEeCCCCChhhH----------HHHHHHHh--hCCcEEEeecCCc
Confidence 344 666666654 57899999998 9999 89999999 66 8888887654
No 128
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.89 E-value=2.1e-10 Score=92.91 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|+++++|++++|+||||||||||+ ++|+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~-~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLV-RALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence 577889999999999999999999 999986
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.9e-09 Score=94.55 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=29.3
Q ss_pred hccCcEEEEcCccCh-----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 106 YAKLDVIGIDEAQFF-----EDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 106 ~~~p~lllLDEP~~~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
..+|+++++|||++. ..+.+.+.+.. .+.++|++||+++.+
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 458999999999873 34555555543 368999999998654
No 130
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.87 E-value=3.1e-09 Score=82.96 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=46.2
Q ss_pred hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
..++.+|++++||||++ ...+.+.+.++.+ .|.|||++|||++ + ..+||++++|+
T Consensus 76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~----------~~~~d~ii~l~ 136 (148)
T 1f2t_B 76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-L----------KDAADHVIRIS 136 (148)
T ss_dssp HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-G----------GGGCSEEEEEE
T ss_pred HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-H----------HHhCCEEEEEE
Confidence 45678999999999988 3468888888876 5899999999984 5 68999999995
No 131
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.84 E-value=7.3e-10 Score=92.00 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=22.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc-Cc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR-SE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~-gl 55 (240)
.+++||++++|++++|+||||||||||+ ++|. |+
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~-~~L~~~~ 51 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVA-NKLLEKQ 51 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHH-HHHHC--
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHH-HHHHhcC
Confidence 6899999999999999999999999999 9999 86
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.83 E-value=1.4e-10 Score=101.05 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=42.7
Q ss_pred ceEEEcceeEee---ecCCCCcc-------------------cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 9 AAVTTNQVNSGR---DRVGLPHR-------------------NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 9 ~~l~~~~ls~~~---l~~vsl~i-------------------~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+|++++|++.| ++++++.+ .+|++++|+||||||||||+ ++|.|+
T Consensus 36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~-~~L~~~ 103 (308)
T 1sq5_A 36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA-RVLQAL 103 (308)
T ss_dssp TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH-HHHHHH
T ss_pred cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 368999999999 88999988 89999999999999999999 999996
No 133
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.82 E-value=1.3e-08 Score=90.34 Aligned_cols=141 Identities=16% Similarity=0.052 Sum_probs=81.5
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchh---cccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG 102 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~ 102 (240)
-+++|+++.|.||+|||||||+ ..++.. ...|..+..+..... .+....++.++...+....++.+.......+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 6899999999999999999999 666553 334555544432210 01111123333322222223333222222110
Q ss_pred hhhhccCcEEEEcCccC----------------------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------h
Q 026304 103 DDAYAKLDVIGIDEAQF----------------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------S 154 (240)
Q Consensus 103 ~~l~~~p~lllLDEP~~----------------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~ 154 (240)
....|+++++|.-+. ..+++..|..++++.+++||++.|-....+..|+ .
T Consensus 136 --~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~G 213 (356)
T 3hr8_A 136 --RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTG 213 (356)
T ss_dssp --HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTH
T ss_pred --hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCC
Confidence 125799999998633 0134455667776679999999998555545553 2
Q ss_pred HHHHHhhccceeeecc
Q 026304 155 VLDIIPLADTVTKLTA 170 (240)
Q Consensus 155 ~~~L~~~ad~i~~l~~ 170 (240)
-..|..++|-++.+..
T Consensus 214 G~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 214 GLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHHCSEEEEEEE
T ss_pred cchhhhhCcEEEEEEe
Confidence 3335677888888875
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.81 E-value=8.6e-09 Score=95.69 Aligned_cols=114 Identities=14% Similarity=-0.006 Sum_probs=68.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhcc--cCCCeEEEccCceecceecCcchhH
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDTR--YAIDSVVTHDGAKLPCWALPELTSF 97 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~~--~~~~~~v~q~~~~~~~~~~~~~~~~ 97 (240)
++++++.+++|+.++|+||||||||||+ ++|+|+.... ..+....+..... .....+..|... ..+...+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~------~~~~~~~ 322 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM------GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS------SSCCBCH
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc------ccCCcCH
Confidence 5678899999999999999999999999 9999974332 2222222211100 000122222221 1122233
Q ss_pred HHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 98 RQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 98 ~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
...+...+-++|+.++++|-...+ ...++..+. .|..++-+.|-
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~--tGh~~~sT~Ha 366 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMS--TGHASYSTLHA 366 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHH--TTCEEEEEEEC
T ss_pred HHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhc--CCCCccccccc
Confidence 333334455799999999997754 555665543 47776666674
No 135
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.80 E-value=2.8e-09 Score=97.46 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=85.7
Q ss_pred ceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh-CCceEEeeccch-----hccc-C-CCeEEEcc-
Q 026304 15 QVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD-NGRNIAMIKSSK-----DTRY-A-IDSVVTHD- 82 (240)
Q Consensus 15 ~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~-~g~~i~~~~~~~-----~~~~-~-~~~~v~q~- 82 (240)
.++.++ |+++..-+++|+++.|.|++|+|||||+ ..+++. .. .|..+..++... ..|. . ..++-++.
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~-l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l 263 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFA-LNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNL 263 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHH-HHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH
Confidence 344455 7778888999999999999999999999 555543 32 465665544211 0110 0 00110000
Q ss_pred --Cc--------------------ee-c---ceecCcchhHHHhhchhh--hccCcEEEEcCccC--------------h
Q 026304 83 --GA--------------------KL-P---CWALPELTSFRQKLGDDA--YAKLDVIGIDEAQF--------------F 120 (240)
Q Consensus 83 --~~--------------------~~-~---~~~~~~~~~~~~~~~~~l--~~~p~lllLDEP~~--------------~ 120 (240)
+. ++ . .+++. .+.... ..+ ..+|+++++|+++. .
T Consensus 264 ~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~---~i~~~~-~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i 339 (454)
T 2r6a_A 264 RTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVS---DIRAKC-RRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEV 339 (454)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHH---HHHHHH-HHHHTTTCCCEEEEECGGGSCCSCC----CHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH---HHHHHH-HHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHH
Confidence 00 00 0 01111 111111 111 25899999999955 1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304 121 EDLYEFCCNAADHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 121 ~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++...|+.++++.+++||+++|--..... .+-.+..+...||.|+.|+.
T Consensus 340 ~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 340 SEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 256677888887679999999992211100 01111235788999999987
No 136
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.79 E-value=1.3e-09 Score=100.39 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=32.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++||++++ ++++|+||||||||||| ++|+|+
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl 52 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTM-AGFVTA 52 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHH-HHHhcC
Confidence 9999999999 99999999999999999 999997
No 137
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.78 E-value=1.8e-09 Score=87.52 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=32.4
Q ss_pred eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+|+++|+++.| +++ |.+.+|..++|+|+||||||||+ +.+.|..
T Consensus 3 ~l~~~~~~~~~~~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl-~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMSAPDIRH--LPSDTGIEVAFAGRSNAGKSSAL-NTLTNQK 50 (210)
T ss_dssp --------CEEEESSGGG--SSCSCSEEEEEEECTTSSHHHHH-TTTCCC-
T ss_pred chhhhhhhheeecCCHhH--CCCCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence 58999999998 666 99999999999999999999999 9998864
No 138
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.76 E-value=6.5e-09 Score=102.24 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=54.5
Q ss_pred hhccCc--EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAKLD--VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~p~--lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
++.+|+ +|||||||+ ...++++|+++++ .|.|||+||||++++ . .||+|++| ++
T Consensus 479 L~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~~~~----------~-~aD~ii~lgpgag~~~ 546 (916)
T 3pih_A 479 IGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDEEVI----------R-NADHIIDIGPGGGTNG 546 (916)
T ss_dssp HHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCHHHH----------H-TCSEEEEEESSSGGGC
T ss_pred HhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------H-hCCEEEEEcCCcccCC
Confidence 566666 999999988 4579999999986 699999999999887 5 49999999 77
Q ss_pred -eeeccCCcce
Q 026304 171 -RCELCGKRAF 180 (240)
Q Consensus 171 -~~~~~g~~~~ 180 (240)
++++.|+++.
T Consensus 547 G~iv~~G~~~e 557 (916)
T 3pih_A 547 GRVVFQGTVDE 557 (916)
T ss_dssp SEEEEEECHHH
T ss_pred CEEEEeechhh
Confidence 8888887754
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=5.3e-10 Score=98.60 Aligned_cols=109 Identities=15% Similarity=0.071 Sum_probs=67.4
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch--hc-------ccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK--DT-------RYA 74 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~--~~-------~~~ 74 (240)
+++++++++.| ++++||++.+|++++|+||||||||||+ ++|.|+. ..+.++....... .. ...
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTI-DALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHH-HHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 57888888887 7899999999999999999999999999 9999863 2333333222111 00 011
Q ss_pred CCeEEEccCceecceecC-cch-----hHHHhhchhhhccCcEEEEcCccC
Q 026304 75 IDSVVTHDGAKLPCWALP-ELT-----SFRQKLGDDAYAKLDVIGIDEAQF 119 (240)
Q Consensus 75 ~~~~v~q~~~~~~~~~~~-~~~-----~~~~~~~~~l~~~p~lllLDEP~~ 119 (240)
..++++|+...+...+.. ..+ ..............+++|+|=|-.
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi 158 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV 158 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 236777777666532211 110 000000001135788999998844
No 140
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.73 E-value=7.9e-10 Score=93.65 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=31.7
Q ss_pred CceEEEcce-eEee------ecCCCCcccC---cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 8 PAAVTTNQV-NSGR------DRVGLPHRNS---GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 8 ~~~l~~~~l-s~~~------l~~vsl~i~~---Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++++|+ +++| |+++||++.+ |++++|+|++||||||+. +.|++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~ 70 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG-KIMAR 70 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH-HHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 358999999 9988 8899999999 999999999999999999 99976
No 141
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.70 E-value=1.7e-08 Score=99.26 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=54.6
Q ss_pred hhcc--CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAK--LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~--p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
+..+ |++|+|||||+ .+.+++.|+++++ .|.|||+|+||++++ ..||+|++| ++
T Consensus 519 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i-----------~~ADrIi~LgpgaG~~g 586 (972)
T 2r6f_A 519 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM-----------LAADYLIDIGPGAGIHG 586 (972)
T ss_dssp HTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH-----------HSCSEEEEECSSSGGGC
T ss_pred HhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-----------HhCCEEEEeCCCccCCC
Confidence 4666 59999999988 4579999999986 799999999999887 469999999 56
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
++++.|+++.+
T Consensus 587 G~iv~~G~~~e~ 598 (972)
T 2r6f_A 587 GEVVAAGTPEEV 598 (972)
T ss_dssp CSEEEEECTTTT
T ss_pred CEEEEecCHHHH
Confidence 88888877544
No 142
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.67 E-value=2e-08 Score=98.95 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=53.5
Q ss_pred hhcc--CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAK--LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~--p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
+..+ |++|||||||+ .+.+++.|+++++ .|.|||+|+||++++ ..||+|++| ++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i-----------~~ADrIi~Lgp~aG~~g 603 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDEDTI-----------EHADWIVDIGPGAGEHG 603 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------HTCSEEEEECSSSGGGC
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHHHH-----------HhCCEEEEecCccccCC
Confidence 4666 58999999988 3578999999987 799999999999887 479999999 45
Q ss_pred -eeeccCCcce
Q 026304 171 -RCELCGKRAF 180 (240)
Q Consensus 171 -~~~~~g~~~~ 180 (240)
++++.|+++.
T Consensus 604 G~iv~~G~~~e 614 (993)
T 2ygr_A 604 GRIVHSGPYDE 614 (993)
T ss_dssp CSCCEEECHHH
T ss_pred CEEEEeeCHHH
Confidence 7888877654
No 143
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.65 E-value=3.2e-08 Score=96.56 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=54.4
Q ss_pred hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304 105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA 170 (240)
Q Consensus 105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~ 170 (240)
+..+| .+|+|||||+ ...++++|+++.+ .|.|||+|+||++++ ..||+|++| ++
T Consensus 394 L~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHdl~~l-----------~~aD~ii~lgpgaG~~~ 461 (842)
T 2vf7_A 394 LYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHDLDVI-----------RRADWLVDVGPEAGEKG 461 (842)
T ss_dssp TTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSGGGC
T ss_pred HhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHH-----------HhCCEEEEeCCCcccCC
Confidence 57787 5999999988 3578999999987 799999999999866 579999999 56
Q ss_pred -eeeccCCccee
Q 026304 171 -RCELCGKRAFF 181 (240)
Q Consensus 171 -~~~~~g~~~~~ 181 (240)
++++.|+++.+
T Consensus 462 G~iv~~g~~~~~ 473 (842)
T 2vf7_A 462 GEILYSGPPEGL 473 (842)
T ss_dssp CSEEEEECGGGG
T ss_pred CEEEEecCHHHH
Confidence 78888876543
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.64 E-value=1.6e-09 Score=97.45 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=26.0
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.+|..++|+|+||||||||+ ++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~-n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFF-RAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHH-HHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 6788999999999999999999 999984
No 145
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.64 E-value=1.1e-08 Score=81.47 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=29.9
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++++++.+| +++|+||||||||||+ ++|.++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll-~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIG-DAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHH-HHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHH-HHHHHH
Confidence 8899999999 9999999999999999 999774
No 146
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.61 E-value=8.3e-08 Score=86.93 Aligned_cols=123 Identities=20% Similarity=0.167 Sum_probs=65.8
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccC
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDG 83 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~ 83 (240)
.++++++++.| |+++ + ..+|++++|+||||||||||| ++|.|+.. ....+........ +...++ .|..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ed~ie--~~~~~~-~q~~ 216 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIE--FDIDGI-GQTQ 216 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCC--SCCSSS-EEEE
T ss_pred CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEecccch--hccCCc-ceEE
Confidence 45667777665 5666 4 379999999999999999999 99998632 2223332211110 000010 0100
Q ss_pred ceecceecCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
.... -...+...+...+-++|+++++.|-.....+.+.+. ... .|..++-+-|..
T Consensus 217 -v~~~----~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~-a~~-tGhlv~~tlh~~ 271 (418)
T 1p9r_A 217 -VNPR----VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQ-ASL-TGHLVMSTLHTN 271 (418)
T ss_dssp -CBGG----GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHH-HHH-TTCEEEEEECCS
T ss_pred -Eccc----cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHH-HHH-hCCCcccccchh
Confidence 0000 001222222333457999999999644333334443 333 466665555643
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.58 E-value=1.5e-08 Score=87.90 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=36.8
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------h---CCceEEeeccchhcccCCCeEEEccCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------D---NGRNIAMIKSSKDTRYAIDSVVTHDGA 84 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~---~g~~i~~~~~~~~~~~~~~~~v~q~~~ 84 (240)
|++.+|++++|+||||||||||+ ++|.|+. + .|+++..... ..+....++++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll-~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLL-NAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPG 230 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHH-HHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHH-HHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcC
Confidence 45778999999999999999999 9999972 2 3444332221 112223578998764
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.58 E-value=1.5e-07 Score=81.87 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.2
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
.++++..+|++++|+|||||||||++ +.|+++ ...|..+...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~-~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSC-GKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHH-HHHHHHHHhcCCEEEEE
Confidence 46677789999999999999999999 888876 3455555443
No 149
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.57 E-value=3.8e-09 Score=92.26 Aligned_cols=24 Identities=42% Similarity=0.477 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
=++++|+|+||||||||+ +.|.|+
T Consensus 4 i~v~~i~G~~GaGKTTll-~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLL-RHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHH-HHHHHS
T ss_pred ccEEEEEecCCCCHHHHH-HHHHhh
Confidence 368999999999999999 999875
No 150
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.56 E-value=3.1e-08 Score=79.16 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=25.9
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+++|++++|+||||||||||+ ++|+|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~-~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIA-EALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHH-HHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHHhc
Confidence 5789999999999999999999 999986
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.53 E-value=4.5e-08 Score=84.77 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=66.9
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCC---eEEEccCceecceecCcchhHHHhhch
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAID---SVVTHDGAKLPCWALPELTSFRQKLGD 103 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~---~~v~q~~~~~~~~~~~~~~~~~~~~~~ 103 (240)
.+|++++++|||||||||++ ..|++... .|+.+........ +.... ........ .+.........+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~-~~LA~~l~~~~G~~V~lv~~D~~-r~~a~eqL~~~~~~~g-l~~~~~~~~~~l~~al~- 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTL-AKLAAISMLEKHKKIAFITTDTY-RIAAVEQLKTYAELLQ-APLEVCYTKEEFQQAKE- 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHH-HHHHHHHHHTTCCCEEEEECCCS-STTHHHHHHHHHTTTT-CCCCBCSSHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCEEEEEecCcc-cchHHHHHHHHHHhcC-CCeEecCCHHHHHHHHH-
Confidence 47999999999999999999 88888642 5766655432210 00000 00000000 00000011111221121
Q ss_pred hhhccCcEEEEcCccC---hHHHHHHHHHHHh---cCCCEEEE-EecChhhhhcccchHHHHHhhccceeeecc
Q 026304 104 DAYAKLDVIGIDEAQF---FEDLYEFCCNAAD---HDGKTVVV-AGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~---~~~i~~~l~~l~~---~~g~tvi~-vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.+.+|+++|+|.|-. ....+..+.++.. ..+.++++ ++|..+.+ .++++++..+..
T Consensus 179 -~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~----------~~~~~~~~~l~~ 241 (296)
T 2px0_A 179 -LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDM----------KHIVKRFSSVPV 241 (296)
T ss_dssp -HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH----------HHHTTTTSSSCC
T ss_pred -HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH----------HHHHHHHhcCCC
Confidence 247999999997733 1233333444432 12334444 48988877 777877765544
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.50 E-value=3.9e-08 Score=80.26 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=26.0
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++|++++|+||||||||||+ ++|+|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLS-NPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHH-HHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 578999999999999999999 9999964
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.49 E-value=1.6e-07 Score=86.32 Aligned_cols=108 Identities=19% Similarity=0.139 Sum_probs=62.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHh
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
++++++.+++| +.|+||+|+|||||+ +.+++.. +.+...++...... .+.. .........
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~~~------------~~~g---~~~~~~r~l 100 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDFVE------------LFVG---VGAARVRDL 100 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGTTT------------CCTT---HHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHHHH------------HHhc---ccHHHHHHH
Confidence 45778888888 889999999999999 9998732 22222221110000 0000 000111222
Q ss_pred hchhhhccCcEEEEcCccCh----------------HHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 101 LGDDAYAKLDVIGIDEAQFF----------------EDLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~----------------~~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
+.......|.+|++||+... ..+.+++..+- ...+..||.+||+++.+
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 22333468999999999541 12334444442 22478899999998654
No 154
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.48 E-value=3.7e-07 Score=79.83 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=35.2
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
++++|++.+|++++++||||+||||++ ..|++. ...|.++...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~-~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSL-AKMANYYAELGYKVLIA 139 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence 689999999999999999999999999 888875 3345555443
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.47 E-value=3.6e-08 Score=80.10 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=22.5
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++|++++|+||||||||||+ ++|.|+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl-~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLL-KKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 57999999999999999999 9999863
No 156
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.44 E-value=6.9e-08 Score=77.95 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.4
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+++++|++++|+|||||||||++ ++|.+..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~-~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVR-KRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHH-HHHHHhh
Confidence 46889999999999999999999 9998864
No 157
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.44 E-value=2.9e-07 Score=81.17 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=71.2
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh------CCceEEeeccchh---c----ccCCCeEEEc---cCce-ec
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD------NGRNIAMIKSSKD---T----RYAIDSVVTH---DGAK-LP 87 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~------~g~~i~~~~~~~~---~----~~~~~~~v~q---~~~~-~~ 87 (240)
--+++|+++.|.||+|||||||+ ..++.. .. .+..+..+..... . +....++-++ +... ..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence 36899999999999999999999 555432 11 2334443322110 0 0000011010 0000 11
Q ss_pred ceecCcchhHHHhhchhh-h--ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChh
Q 026304 88 CWALPELTSFRQKLGDDA-Y--AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGD 146 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l-~--~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~ 146 (240)
..+..+...+...+...+ - .++++|++|+.+.. .+++..|+.++++.+.+||+++|...
T Consensus 196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 112222222221111111 1 57999999999651 12344456666667999999999776
Q ss_pred hhhc--ccc-h----H--HHHHhhccceeeecc
Q 026304 147 YLRR--SFG-S----V--LDIIPLADTVTKLTA 170 (240)
Q Consensus 147 ~~~~--~f~-~----~--~~L~~~ad~i~~l~~ 170 (240)
.... .|. + + ..+...+|-++.|+.
T Consensus 276 ~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 276 DPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp -----------------CCTTTTSSSEEEEEEE
T ss_pred cCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 5433 341 1 1 124566777777764
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=7.1e-08 Score=78.10 Aligned_cols=33 Identities=24% Similarity=0.050 Sum_probs=22.9
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++|+||++++|++++|+||+||||||+. +.|++
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~-~~La~ 47 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLG-KAFAR 47 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 8899999999999999999999999999 98875
No 159
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.40 E-value=6.9e-08 Score=84.01 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=27.1
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++.+|++++|+||||||||||+ ++|.|.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLl-n~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLL-NAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHH-HHhccc
Confidence 78899999999999999999999 999996
No 160
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.38 E-value=7e-07 Score=79.20 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch------hcccCCCeEEEccCceecceecCcchhHHHh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK------DTRYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~------~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
-+++|+++.|.||+|+|||||.+.++......|..+..+.... ..+.+.. ...-.+....+..+.......
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~---~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD---IDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCC---GGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCC---hhheeeeCCCCHHHHHHHHHH
Confidence 4889999999999999999998454444444455555443211 0111110 000000111111111111111
Q ss_pred hchhhhccCcEEEEcCccCh---H----------------HHHHHHHHH---HhcCCCEEEEEecChhhhhcccchH---
Q 026304 101 LGDDAYAKLDVIGIDEAQFF---E----------------DLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGSV--- 155 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~---~----------------~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~~--- 155 (240)
+. .-.+++++++|.++.. . .+.+.++++ +++.+++||++.|-.......|+..
T Consensus 136 l~--~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~ 213 (356)
T 1u94_A 136 LA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 213 (356)
T ss_dssp HH--HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------C
T ss_pred HH--hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence 10 1257999999999651 1 123344444 4457999999999776665555431
Q ss_pred ---HHHHhhccceeeecc-eeeccC
Q 026304 156 ---LDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 156 ---~~L~~~ad~i~~l~~-~~~~~g 176 (240)
..|..+||-++.++. .....|
T Consensus 214 ~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 214 TGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp TTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCCcceeeeccEEEEEEEeeeeccC
Confidence 246778998887776 543334
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.38 E-value=8.1e-08 Score=77.01 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
|++++|+||||||||||+ ++|.|+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~-~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL-KKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHH-HHHHHHC
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 578999999999999999 9999863
No 162
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=9.3e-07 Score=76.35 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=38.3
Q ss_pred EEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEee
Q 026304 12 TTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMI 65 (240)
Q Consensus 12 ~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~ 65 (240)
.++++++.| .++++|+ +|++++++|+||+||||++ +.++++. ..|..+...
T Consensus 78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~-~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLV 132 (295)
T ss_dssp HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEe
Confidence 345666555 3578888 8999999999999999999 8888863 345555443
No 163
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.36 E-value=1.2e-07 Score=84.34 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=44.1
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA 179 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~ 179 (240)
.+|++||||||++ +..+++.+.++ +.|+|++||+ + . .||++++|++ ++...|+++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~------------~-~~~~i~~l~~G~i~~~g~~~ 352 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-A------------P-GAALTLRAQAGRFTPVADEE 352 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-C------------T-TCSEEEEEETTEEEECCCTT
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-c------------c-cCCEEEEEECCEEEecCCHH
Confidence 6999999999988 33566665544 3699999994 2 2 7999999999 888888876
Q ss_pred ee
Q 026304 180 FF 181 (240)
Q Consensus 180 ~~ 181 (240)
.+
T Consensus 353 ~~ 354 (359)
T 2o5v_A 353 MQ 354 (359)
T ss_dssp TS
T ss_pred HH
Confidence 54
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=6.6e-08 Score=78.39 Aligned_cols=35 Identities=14% Similarity=-0.008 Sum_probs=30.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.+..++..++|++++|+|||||||||++ +.|++..
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~-~~La~~l 49 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLA-CALNQML 49 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4556677799999999999999999999 9998853
No 165
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.35 E-value=1.9e-07 Score=80.96 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=38.4
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hh---CCceEEeeccchhcccCCCeEEEccCcee-----cce
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKL-----PCW 89 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~-----~~~ 89 (240)
+++.+|++++|+||||||||||+ ++|. + .+ .|+++..... ..+....++++|.+.+. +.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLl-n~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSIL-SRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHH-HHHH-SCCCCCSCC---------CCCCEE--EEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHH-HHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCCcEEEECcCcCcCcccccC
Confidence 35668999999999999999999 9998 6 12 3433322111 11222358999887543 455
Q ss_pred ec
Q 026304 90 AL 91 (240)
Q Consensus 90 ~~ 91 (240)
++
T Consensus 236 t~ 237 (302)
T 2yv5_A 236 KP 237 (302)
T ss_dssp CG
T ss_pred CH
Confidence 66
No 166
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.35 E-value=6.5e-07 Score=83.05 Aligned_cols=55 Identities=16% Similarity=0.026 Sum_probs=47.2
Q ss_pred hhhhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 103 DDAYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 103 ~~l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
..++.+| ++||||||++ ...+.++|+++++ |.+||++|||++.+ .+||++++|++
T Consensus 410 ~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~-----------~~~d~~~~~~~ 472 (517)
T 4ad8_A 410 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIA-----------ARAHHHYKVEK 472 (517)
T ss_dssp HHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHH-----------HHSSEEEEEEC
T ss_pred HHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-----------HhCCEEEEEec
Confidence 3468899 9999999988 4578899999875 78999999999876 46999999976
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.32 E-value=1e-08 Score=85.61 Aligned_cols=46 Identities=20% Similarity=0.056 Sum_probs=37.2
Q ss_pred CCCceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 6 LKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 6 ~~~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+....|+++|++..|-. ++++.+ ++++|+||||||||||| ++|+|+
T Consensus 5 ~k~~~l~l~~~~~~~~~--~~~~~~-~~~~i~GpnGsGKSTll-~~i~g~ 50 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR--TFDLDE-LVTTLSGGNGAGKSTTM-AAFVTA 50 (227)
T ss_dssp CEEEEEEEEEETTEEEE--EECHHH-HHHHHHSCCSHHHHHHH-HHHHHH
T ss_pred ceeeEEEEEeeecccCC--EEEEcC-cEEEEECCCCCCHHHHH-HHHhcc
Confidence 33457889998765533 667766 89999999999999999 999996
No 168
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.32 E-value=5.7e-07 Score=78.50 Aligned_cols=144 Identities=8% Similarity=0.028 Sum_probs=66.0
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcC-chhC------CceEEeeccchh---c----ccCCCeEEEc---cCce-ec
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRS-ESDN------GRNIAMIKSSKD---T----RYAIDSVVTH---DGAK-LP 87 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~------g~~i~~~~~~~~---~----~~~~~~~v~q---~~~~-~~ 87 (240)
--+++|+++.|.||+|+|||||+ ..++. .... +..+..+..... . +....++-++ +... ..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~ 180 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR 180 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEe
Confidence 46899999999999999999999 44433 2111 334444332110 0 0000011110 0000 01
Q ss_pred ceecCcchhHHHhhchhh-h-ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304 88 CWALPELTSFRQKLGDDA-Y-AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDY 147 (240)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l-~-~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~ 147 (240)
..+..+...+...+...+ - .+|++|++|+.++. .+++..|+.++++.+.+||++.|-...
T Consensus 181 ~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 181 AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 111111111111111111 1 57999999998652 123444556666679999999997655
Q ss_pred hhcccch------HHHHHhhccceeeecc
Q 026304 148 LRRSFGS------VLDIIPLADTVTKLTA 170 (240)
Q Consensus 148 ~~~~f~~------~~~L~~~ad~i~~l~~ 170 (240)
....|+. ...+...+|.++.|+.
T Consensus 261 ~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 261 PDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp ---------------------CEEEEEEE
T ss_pred CCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 5433321 1124566777777764
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.31 E-value=2.2e-07 Score=74.09 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=23.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+|++++|+||||||||||+ +.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~-~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK-NTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 6899999999999999999 999875
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=1.4e-06 Score=79.34 Aligned_cols=97 Identities=26% Similarity=0.311 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
+..+.|.||+|+|||||+ +.|++... .+..+..++...... .+...+.-.....+. ....
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKFLN-----------DLVDSMKEGKLNEFR-----EKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEHHHHHH-----------HHHHHHHTTCHHHHH-----HHHT
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeHHHHHH-----------HHHHHHHcccHHHHH-----HHhc
Confidence 467999999999999999 99987431 122222221110000 000000000000111 1134
Q ss_pred -cCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 108 -KLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 108 -~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
+|++|++||+++ +..++..+..+.+ .|..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 899999999965 2357777777766 688999999974
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.27 E-value=2.9e-07 Score=74.50 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=24.1
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++.++|++++|+|||||||||++ ++|++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~-~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIA-HGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 55678999999999999999999 9998753
No 172
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=4.9e-07 Score=74.93 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=29.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.+-+...++|++++|.|+|||||||++ ++|.++
T Consensus 10 ~~~~~~~~~~g~~i~i~G~~GsGKSTl~-~~L~~~ 43 (230)
T 2vp4_A 10 KGTKYAEGTQPFTVLIEGNIGSGKTTYL-NHFEKY 43 (230)
T ss_dssp --CCBTTTCCCEEEEEECSTTSCHHHHH-HTTGGG
T ss_pred hCCccCCCCCceEEEEECCCCCCHHHHH-HHHHhc
Confidence 4456778899999999999999999999 999986
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=1.2e-06 Score=77.05 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.8
Q ss_pred CcE--EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGE--IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge--~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+. .+.|.||+|+|||||+ +.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~-~~l~~~ 67 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTL-RKLWEL 67 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 446 8999999999999999 988764
No 174
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.20 E-value=3.5e-06 Score=75.00 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=73.5
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCceecceecCcchhHHHh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
-+++|+++.|.||.|+|||||++.++......|..+..+..... .+.+ +-...-.+....+..+.......
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g---~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALG---VNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT---CCGGGCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcC---CCHHHceeecCCcHHHHHHHHHH
Confidence 58899999999999999999995555544444555555432210 0111 10000000111111111111111
Q ss_pred hchhhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccch----
Q 026304 101 LGDDAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS---- 154 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~---- 154 (240)
+. .-..+++|++|..+.. ..+.+.++++ +++.+++||++.|-.......|+.
T Consensus 147 l~--~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~ 224 (366)
T 1xp8_A 147 LV--RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETT 224 (366)
T ss_dssp HH--TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------------
T ss_pred HH--hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCcccc
Confidence 10 1247999999998541 1234455554 456899999999876555444432
Q ss_pred --HHHHHhhccceeeecc
Q 026304 155 --VLDIIPLADTVTKLTA 170 (240)
Q Consensus 155 --~~~L~~~ad~i~~l~~ 170 (240)
...|..+||-++.|+.
T Consensus 225 ~gg~al~~~a~~rl~L~r 242 (366)
T 1xp8_A 225 TGGRALKFYASVRLDVRK 242 (366)
T ss_dssp -CHHHHHHHCSEEEEEEE
T ss_pred CCcchhhheeeEEEEEEe
Confidence 3346778998888876
No 175
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.19 E-value=4.1e-07 Score=77.71 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=30.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++++.+++| ++|+||||+|||||+ ++|+|.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLa-kala~~ 67 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLA-KAVANE 67 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHH-HHHHHH
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHH-HHHHHH
Confidence 67899999999 999999999999999 999985
No 176
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.17 E-value=7.1e-07 Score=72.82 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=24.1
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++|++++|+||||||||||+ +.|.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~-~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR-EAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH-HHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence 58999999999999999999 999875
No 177
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.16 E-value=2.8e-07 Score=82.33 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=33.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG 59 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g 59 (240)
++++++.+++|++++|+||||||||||+ ++|+|. ..|
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~-~~l~~~-~~g 195 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLA-AALLEL-CGG 195 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHH-HHHHHH-HCC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHH-HHHHhh-cCC
Confidence 6788999999999999999999999999 999984 344
No 178
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.14 E-value=1.2e-06 Score=68.10 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=25.8
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++.++++.+| +.+|+|||||||||++ .+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil-~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLL-DAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHH-HHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHH-HHHHH
Confidence 45556666655 9999999999999999 88764
No 179
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.14 E-value=1.9e-06 Score=84.05 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+|.+.+|+.++|+||+|+|||||+ ++|++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLa-rala~~ 261 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIA-RAVANE 261 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHH-HHHHHT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 567899999999999999999999 999874
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.14 E-value=4.8e-07 Score=81.92 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=42.2
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.+|+++|||||++ +..+.++|+++.. .+.++|++||+.... ..||+++.+..
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-----------~~~d~~~~~~~ 411 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-----------EKSDALVGVYR 411 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-----------TTCSEEEEEEE
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-----------HhCCEEEEEEE
Confidence 4799999999988 3467888887764 578999999996554 68999998864
No 181
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.12 E-value=5.8e-06 Score=69.18 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=23.1
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++.+++.++.| +.|+||+|+|||||+ +.+++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la-~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLA-KAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHH-HHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHH-HHHHHH
Confidence 34555666666 889999999999999 999874
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.11 E-value=1.2e-06 Score=73.07 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=23.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc---Cc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIR---SE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~---gl 55 (240)
++++++|+||||||||||+ ++|+ |+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~-k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC-QRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHhCC
Confidence 4789999999999999999 9999 86
No 183
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.10 E-value=1.4e-06 Score=76.24 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.8
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+..+.|.||+|+|||||+ +.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~-~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV-KFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 45789999999999999999 888764
No 184
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.10 E-value=1.3e-06 Score=68.68 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+|++++|+|||||||||++ +.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~-~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVA-SEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHH-HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH-HHHHHh
Confidence 57999999999999999999 999874
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.10 E-value=9.8e-06 Score=77.42 Aligned_cols=119 Identities=14% Similarity=0.036 Sum_probs=63.6
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---------CCceEEeeccchhcccCCCeEEEccC------ceecce
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---------NGRNIAMIKSSKDTRYAIDSVVTHDG------AKLPCW 89 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---------~g~~i~~~~~~~~~~~~~~~~v~q~~------~~~~~~ 89 (240)
|+++++|..++|+|++|+|||||+ +.|.+... +|..+....+... +.+ ..+.++.. ..+.-+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl-~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~-~~g-iti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLT-EALLYKTGAKERRGRVEEGTTTTDYTPEAK-LHR-TTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHH-HHHHHHTTSSSSCCCGGGTCCSSCCSHHHH-HTT-SCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHH-HHHHHhcCCCCccceecCCcccccCCHHHH-hcC-CeEEecceEEeeCCEEEEEE
Confidence 467889999999999999999999 88875421 2222222211111 111 12222211 111111
Q ss_pred ecCcchhHHHhh-chhhhccCcEEEEcCccC--hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 90 ALPELTSFRQKL-GDDAYAKLDVIGIDEAQF--FEDLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 90 ~~~~~~~~~~~~-~~~l~~~p~lllLDEP~~--~~~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
...+...+.... ......+.-++++| |+. ..+..+.++.+.. .+.+++++.|.++..
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence 111222222111 11235678899999 654 2234455555554 688999999999876
No 186
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.10 E-value=8.7e-07 Score=74.14 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=35.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.+++++++.| ++++++++++| ++|+||||+|||||+ +++++..
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~-~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHh
Confidence 3445555444 78999999999 999999999999999 9998753
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.08 E-value=1.8e-05 Score=64.52 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
.+..+.|.||.|+|||||+ +.+.... ..+..+......... .. ..+ . + ..+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~~~~---------------~~--~~~---~---~--~~~~~ 104 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIPLGIHA---------------SI--STA---L---L--EGLEQ 104 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEGGGGG---------------GS--CGG---G---G--TTGGG
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEHHHHH---------------HH--HHH---H---H--HhccC
Confidence 5788999999999999999 8887532 223333222111000 00 000 0 0 12367
Q ss_pred CcEEEEcCccC-------hHHHHHHHHHHHhcCCCE-EEEEecCh
Q 026304 109 LDVIGIDEAQF-------FEDLYEFCCNAADHDGKT-VVVAGLDG 145 (240)
Q Consensus 109 p~lllLDEP~~-------~~~i~~~l~~l~~~~g~t-vi~vtHd~ 145 (240)
+.+|++||... +..+.+++..... .+.. +|++++..
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~ 148 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASAS 148 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSC
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence 99999999855 2346677766665 3544 77777643
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.07 E-value=1.6e-06 Score=72.94 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=24.6
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHc---Cc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIR---SE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~---gl 55 (240)
++|++++|+|||||||||++ ++|+ |+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~-k~La~~Lg~ 53 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC-KALAESLNW 53 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH-HHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHhcCC
Confidence 78999999999999999999 9999 75
No 189
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.07 E-value=5.7e-06 Score=65.96 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=40.1
Q ss_pred ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304 107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT 169 (240)
Q Consensus 107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~ 169 (240)
..|++++||||++ ...+.++|+++.+ +.++|++||+... ..+||+++.+.
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-----------~~~ad~i~~v~ 140 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-----------MANADKIIGVS 140 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-----------HTTCSEEEEEE
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-----------HHhCCEEEEEE
Confidence 4579999999988 3478888888764 4689999999754 47899999775
No 190
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.06 E-value=1.1e-06 Score=74.66 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++++++++++| ++|+||||+|||||+ ++|++..
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~-~~i~~~~ 97 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA 97 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHH-HHHHHHc
Confidence 67899999999 999999999999999 9998853
No 191
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.06 E-value=3.4e-06 Score=78.14 Aligned_cols=32 Identities=6% Similarity=0.015 Sum_probs=28.1
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.+++++.++..+.|.|++||||||++ +.|..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L-~~li~ 189 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGV-NAMIL 189 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHH-HHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHH-HHHHH
Confidence 357888999999999999999999999 77654
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.05 E-value=1e-06 Score=77.57 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=72.8
Q ss_pred cceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccC-CCeEEEccCce
Q 026304 14 NQVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYA-IDSVVTHDGAK 85 (240)
Q Consensus 14 ~~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~-~~~~v~q~~~~ 85 (240)
..++.+| |+.+..-+.+|+++.|.|++|+|||||+++++......|..+..++-... .|.- ...-+......
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~ 106 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLE 106 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHh
Confidence 3455555 66666689999999999999999999994554444446766666543210 0100 00000000000
Q ss_pred ecceecCcchhHHHhhchhhhccCcEEEEcCccC-hHHHHHHHHHHHhcC-CCEEEEEec
Q 026304 86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF-FEDLYEFCCNAADHD-GKTVVVAGL 143 (240)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-~~~i~~~l~~l~~~~-g~tvi~vtH 143 (240)
...++-.+...+.. ....+.++++++.|+|.. ..++...++++.++. +..+|++-|
T Consensus 107 ~g~Ls~~e~~~l~~--a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 107 SGRLDDDQWENLAK--CFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HTCCCHHHHHHHHH--HHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cCCCCHHHHHHHHH--HHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 00000000000110 112346788999999964 678888888887756 788888865
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.04 E-value=7e-07 Score=80.78 Aligned_cols=34 Identities=18% Similarity=-0.038 Sum_probs=32.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-++++|+++.|+.++|+|+||||||||| ++|++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL-~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLL-AAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHH-HHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHH-HHHHcC
Confidence 4689999999999999999999999999 999986
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.04 E-value=3e-05 Score=66.05 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++..+.|.||+|+||||++ +.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la-~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA-RAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 5678999999999999999 999763
No 195
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.02 E-value=7.6e-06 Score=72.64 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred hhcc-CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 105 AYAK-LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 105 l~~~-p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
+..+ |++||||||++ ...+.+.|.++.. +.+||++||+++ + ..+||++++|+.
T Consensus 301 l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~-~----------~~~~d~~~~l~k 360 (371)
T 3auy_A 301 LIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHRE-L----------EDVADVIINVKK 360 (371)
T ss_dssp HHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGG-G----------GGGCSEEEEEEE
T ss_pred HhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHH-H----------HhhCCEEEEEEe
Confidence 3568 99999999988 3467777777533 468999999986 5 589999999874
No 196
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.01 E-value=1.7e-07 Score=82.20 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=38.1
Q ss_pred eEEEcceeEee-----ecCCCCcccCc-------EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSG-------EIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~G-------e~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+++.++++..| ++++++.+.+| +.++|+||||+|||||+ ++++|..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa-~~ia~~l 75 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA-HIIASEL 75 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH-HHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH-HHHHHHh
Confidence 45666676655 67888888877 89999999999999999 9999853
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.01 E-value=5.8e-06 Score=71.77 Aligned_cols=64 Identities=14% Similarity=-0.051 Sum_probs=39.8
Q ss_pred ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------hHHHHHhhc
Q 026304 107 AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------SVLDIIPLA 162 (240)
Q Consensus 107 ~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~~~~L~~~a 162 (240)
.+++++++|..+.. .+++..|+.++++.+.+||++.|-.......|+ ....+...+
T Consensus 203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~ 282 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA 282 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHC
T ss_pred cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcC
Confidence 57999999998541 123445556666689999998885543333331 123457778
Q ss_pred cceeeecc
Q 026304 163 DTVTKLTA 170 (240)
Q Consensus 163 d~i~~l~~ 170 (240)
|.++.|+.
T Consensus 283 d~~i~l~~ 290 (322)
T 2i1q_A 283 TFRFFVRK 290 (322)
T ss_dssp SEEEEEEE
T ss_pred cEEEEEEe
Confidence 88888864
No 198
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.01 E-value=1.7e-05 Score=65.31 Aligned_cols=65 Identities=12% Similarity=-0.067 Sum_probs=42.0
Q ss_pred hccCcEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 106 YAKLDVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 106 ~~~p~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
..+|+++++|--+. ..++...|+.++++.++++++++|-.......+.....+...||-|+.|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~ 207 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEE
Confidence 45889999996533 335666777777778999999998654332222223334667898888864
No 199
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.01 E-value=6.9e-06 Score=66.04 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+.|.||+|+|||||+ +.++..
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHH
Confidence 68999999999999999 888764
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.01 E-value=1.8e-06 Score=67.69 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.|++++|+|||||||||++ +.|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~-~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG-RQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 4678999999999999999 999874
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=2.2e-06 Score=69.83 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=24.4
Q ss_pred CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|+...+|++++|+||||||||||+ +.|.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~-~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIK-NALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHH-HHHHhh
Confidence 445568999999999999999999 888764
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.00 E-value=2.9e-06 Score=68.73 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=25.7
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..++|++++|+|+|||||||++ +.|.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHH-HHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 4678999999999999999999 999885
No 203
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.00 E-value=2.6e-06 Score=82.74 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+..|+.+.|+||+||||||++ ..+.+
T Consensus 106 l~~~~~vii~gpTGSGKTtll-p~ll~ 131 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQI-PQFVL 131 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHH-HHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHH-HHHHH
Confidence 557899999999999999987 77744
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.00 E-value=3.3e-06 Score=68.41 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++--++++|.+++|+|++||||||++ +.|.+.
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~-~~L~~~ 44 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLA-KNLQKH 44 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHH-HHHHTT
T ss_pred cccccCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 45557889999999999999999999 999874
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=9.1e-06 Score=70.35 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK 108 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (240)
.+..+.|.||+|+|||||+ +.+.+... .+..+..++...... .+.....-.....+. ....+
T Consensus 36 ~~~~lll~G~~GtGKT~la-~~i~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~ 98 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDFAQ-----------AMVEHLKKGTINEFR-----NMYKS 98 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHHHH-----------HHHHHHHHTCHHHHH-----HHHHT
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHHHCCCEEEEEEHHHHHH-----------HHHHHHHcCcHHHHH-----HHhcC
Confidence 4568999999999999999 98876432 233333222110000 000000000000111 12356
Q ss_pred CcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304 109 LDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLD 144 (240)
Q Consensus 109 p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd 144 (240)
+++|++||+.. +..+...+..+.+ .+..+|++++.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 99999999965 2356666666665 56667776654
No 206
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.99 E-value=7.8e-06 Score=71.30 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=60.3
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC--CceEEeeccchh---cccCCCeEEEccCceecceecCcc-hhHHHh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN--GRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPEL-TSFRQK 100 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~--g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~-~~~~~~ 100 (240)
=+++| ++.|.||.|+|||||++.++....-. |..+..+..... .+....++-...-.+....+..+. ......
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 47899 99999999999999986777655432 444444432210 010001111111011111122222 111111
Q ss_pred hchhhhccCcEEEEcCccCh---------------------HHHHHHHH---HHHhcCCCEEEEEecChhhhhcccch
Q 026304 101 LGDDAYAKLDVIGIDEAQFF---------------------EDLYEFCC---NAADHDGKTVVVAGLDGDYLRRSFGS 154 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~---------------------~~i~~~l~---~l~~~~g~tvi~vtHd~~~~~~~f~~ 154 (240)
+....-.+|+++++|=.++. +.+.+.|+ .++++.++++|++.|-.. .+..|+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~~fg~ 180 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQEMFSK 180 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC----------
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCcccCC
Confidence 10011247999999976441 01222333 345568999999999877 7666743
No 207
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.99 E-value=2.5e-06 Score=75.65 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=28.5
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++++++. .+|++++|+||||||||||+ ++|.|..
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLl-n~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLL-NALLGLQ 239 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHH-HHHHCCS
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHH-HHHhccc
Confidence 4555554 47999999999999999999 9999963
No 208
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.99 E-value=3e-06 Score=80.02 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=32.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++++.+.+|+.++|+||||+|||||+ ++|+++
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtla-r~ia~~ 83 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLG-QAMAEL 83 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHH-HHHHHT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHH-HHHhcc
Confidence 6789999999999999999999999999 999986
No 209
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=4.7e-06 Score=71.80 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.3
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.+.++..+.|.||+|+|||||+ +.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la-~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLA-KAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHH-HHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHH-HHHHHH
Confidence 34678889999999999999999 999863
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.95 E-value=5.4e-06 Score=72.06 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=67.4
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccC--CCeEEEccCceecc--eec
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYA--IDSVVTHDGAKLPC--WAL 91 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~--~~~~v~q~~~~~~~--~~~ 91 (240)
|+.+..-+++|+++.|.|++|+|||||+++++......|..+..++-... .|.. ..++-.+. ..... ++-
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~-l~~~~~~l~~ 136 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQK-IKAARRDFAS 136 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHH-HHSCHHHHCS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCCCCCH
Confidence 66666679999999999999999999984554444445555555432210 0100 00000000 00000 111
Q ss_pred CcchhHHHhhchhhhccCcEEEEcCccC-hHHHHHHHHHHHhcCCCE--EEEEecC
Q 026304 92 PELTSFRQKLGDDAYAKLDVIGIDEAQF-FEDLYEFCCNAADHDGKT--VVVAGLD 144 (240)
Q Consensus 92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~-~~~i~~~l~~l~~~~g~t--vi~vtHd 144 (240)
.+...+.. +...+.++++++.|+|.. ..++...++++.++.+.. +|++-|-
T Consensus 137 ~~~~~l~~--a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 137 EDWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp SCHHHHHH--HHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHH--HHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 11111111 111245678999999854 677888888887656777 8877663
No 211
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.93 E-value=3.5e-05 Score=69.98 Aligned_cols=147 Identities=15% Similarity=0.065 Sum_probs=80.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccch-----hcccC--CCeEEEc---cC------
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSK-----DTRYA--IDSVVTH---DG------ 83 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~-----~~~~~--~~~~v~q---~~------ 83 (240)
|+.+.--+++|+++.|.|++|+|||||++++...... .|..+..++... ..|.- ..++-.+ .+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 5555556899999999999999999999444443333 365665543211 00100 0000000 00
Q ss_pred --------------cee----cceecCcchhHHHhhchh-hhccCcEEEEcCccC---h-------------HHHHHHHH
Q 026304 84 --------------AKL----PCWALPELTSFRQKLGDD-AYAKLDVIGIDEAQF---F-------------EDLYEFCC 128 (240)
Q Consensus 84 --------------~~~----~~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~---~-------------~~i~~~l~ 128 (240)
.++ +..++. .+...+... .-.+++++++|..+. . .++...|+
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~---~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk 346 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLM---EVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK 346 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHH---HHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHH---HHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 000 001111 111111111 124799999998743 1 24666777
Q ss_pred HHHhcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304 129 NAADHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 129 ~l~~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~ 170 (240)
.++++.+++||+++|-...... .+-.+..+...||.|+.|..
T Consensus 347 ~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 347 ALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8887789999999994332211 01122345778999999976
No 212
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=1.2e-06 Score=76.71 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=29.4
Q ss_pred ecCCCCcccCcE------EEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGE------IHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge------~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+++++..+..++ +++|+||||||||||+ ++|.++.
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~-~~L~~ll 116 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS-RVLKALL 116 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHh
Confidence 556677776666 9999999999999999 9998863
No 213
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.89 E-value=6.5e-06 Score=67.04 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=25.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.+.++++.+ .+.+|+|||||||||++ .+|.-
T Consensus 14 ~~~~~i~f~~-~~~~I~G~NgsGKStil-~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKE-GINLIIGQNGSGKSSLL-DAILV 45 (203)
T ss_dssp BSSEEEECCS-EEEEEECCTTSSHHHHH-HHHHH
T ss_pred ccceEEEeCC-CeEEEEcCCCCCHHHHH-HHHHH
Confidence 4555666666 49999999999999999 87753
No 214
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.86 E-value=3.1e-05 Score=65.48 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.++.-+.|.||.|+|||||+ +.++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la-~~la~ 73 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLA-KAVAT 73 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHH-HHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHH-HHHHH
Confidence 356667999999999999999 98875
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.86 E-value=1.7e-05 Score=82.31 Aligned_cols=141 Identities=16% Similarity=0.055 Sum_probs=79.5
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc---ccCCCeEEEccCceecceecCcchhHHHhhch
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQKLGD 103 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~ 103 (240)
-+++|+++.|.||+|+|||||++.++......|..+..++-.... +....++-.+.-.+....++. .+...+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~le---ei~~~l~~ 804 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE---QALEICDA 804 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH---HHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHH---HHHHHHHH
Confidence 489999999999999999999944443333445555544321100 000001111111111111111 22222111
Q ss_pred h-hhccCcEEEEcCccCh-------------------HHHHHHHHH---HHhcCCCEEEEEecChhhhhcccch------
Q 026304 104 D-AYAKLDVIGIDEAQFF-------------------EDLYEFCCN---AADHDGKTVVVAGLDGDYLRRSFGS------ 154 (240)
Q Consensus 104 ~-l~~~p~lllLDEP~~~-------------------~~i~~~l~~---l~~~~g~tvi~vtHd~~~~~~~f~~------ 154 (240)
. .-.+|+++++|+.+.. .++.+.+++ ++++.+++||+++|-.......|+.
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~g 884 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 884 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESS
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCC
Confidence 0 1258999999998551 123344444 4555799999999966555555641
Q ss_pred HHHHHhhccceeeecc
Q 026304 155 VLDIIPLADTVTKLTA 170 (240)
Q Consensus 155 ~~~L~~~ad~i~~l~~ 170 (240)
...|...||-++.++.
T Consensus 885 s~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 885 GNALKFYASVRLDIRR 900 (1706)
T ss_dssp CSHHHHHEEEEEEEEE
T ss_pred cchhhheeeEEEEEEe
Confidence 3457888999999976
No 216
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.84 E-value=1.9e-05 Score=71.43 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=33.8
Q ss_pred eEEEcceeEeeecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 10 AVTTNQVNSGRDRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 10 ~l~~~~ls~~~l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.|+++|+ ++| .+. .+++.+|++++|+||||||||||+ ++|.++
T Consensus 6 ~l~~~~~-~~~-~~~~~~~~~~~~~~~i~G~nG~GKstll-~ai~~~ 49 (430)
T 1w1w_A 6 GLELSNF-KSY-RGVTKVGFGESNFTSIIGPNGSGKSNMM-DAISFV 49 (430)
T ss_dssp EEEEESC-SSC-CSEEEEECTTCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEEeCE-EEE-CCceeEEecCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 4677777 466 222 256778999999999999999999 998774
No 217
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.83 E-value=1.1e-06 Score=77.19 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=40.1
Q ss_pred EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEE
Q 026304 11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIA 63 (240)
Q Consensus 11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~ 63 (240)
++.+++++.| ++++++++.+|.+++|+|++|+|||||+ +.|++.. ..|.++.
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~-~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFL-EAFGMLLIREGLKVA 88 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEE
Confidence 4555555554 6789999999999999999999999999 9888753 2344443
No 218
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.82 E-value=6.2e-06 Score=77.14 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=27.2
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
..+.+|++++|+|+||||||||+ ++|++..
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLa-r~La~~L 393 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLA-RALAARL 393 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHH-HHHHHHH
T ss_pred cccccceEEEEECCCCChHHHHH-HHHHHhh
Confidence 36789999999999999999999 9999863
No 219
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.82 E-value=8.8e-06 Score=64.84 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++|++..+|..++|+|++||||||+. +.|..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~-~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMA-EMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 68999999999999999999999999 88864
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.81 E-value=1e-05 Score=67.12 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=24.4
Q ss_pred ecCCCCccc---CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRN---SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~---~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|.++|+.+. +|.+++|.||+||||||++ +.|...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~ 49 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVI-NEVYHR 49 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence 566666665 9999999999999999999 888764
No 221
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.78 E-value=4.4e-06 Score=74.68 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=40.4
Q ss_pred eEEEcceeEee------ec--------------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 10 AVTTNQVNSGR------DR--------------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 10 ~l~~~~ls~~~------l~--------------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.++|+++.| ++ |+++.+.+|+.++|+||+|+|||||+ +.|.+.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl-~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH-HHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH-HHHHHH
Confidence 46788999988 67 79999999999999999999999999 888774
No 222
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.78 E-value=2.9e-06 Score=78.63 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=29.8
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++++++.+| +.+|+|+||||||||+ .+|..+
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~ll-eAl~~l 83 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIV-DALGLL 83 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHT-HHHHHH
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHH-HHHHHH
Confidence 78999999999 9999999999999999 888543
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.75 E-value=5e-06 Score=66.14 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++|+|+||||||||+ +.|.|+
T Consensus 3 ~~v~IvG~SGsGKSTL~-~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI-TRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 58999999999999999 999986
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.75 E-value=1.3e-05 Score=63.25 Aligned_cols=26 Identities=27% Similarity=0.124 Sum_probs=23.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+|++++|+|++||||||++ +.|.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~-~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVS-MALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 47999999999999999999 999874
No 225
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.74 E-value=1.5e-05 Score=70.79 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=30.9
Q ss_pred EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
..+..|+..- +++..+++.+| +.+|+|||||||||+| ..|.
T Consensus 3 M~l~~L~l~nFr~~~~~~i~f~~g-l~vi~G~NGaGKT~il-eAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFKSHVNSRIKFEKG-IVAIIGENGSGKSSIF-EAVF 46 (371)
T ss_dssp EEEEEEEEEEETTEEEEEEECCSE-EEEEEECTTSSHHHHH-HHHH
T ss_pred cEEeEEEEEccccccceEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence 4555555542 56677777774 9999999999999999 7764
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.72 E-value=1.5e-05 Score=64.30 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|+|||||||||+. +.|++
T Consensus 4 ~i~l~G~~GsGKST~~-~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA-NLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 7899999999999999 99987
No 227
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.70 E-value=7.1e-05 Score=78.70 Aligned_cols=145 Identities=17% Similarity=0.113 Sum_probs=83.1
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCceecceecCcchhHHHh
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKLPCWALPELTSFRQK 100 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~ 100 (240)
-+++|+++.|.||.|+|||||+++++......|..+..++.... .+.+ +-.+.-.+....+..+.......
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lG---vd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---VDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTT---CCTTTCEEECCSSHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcC---CCHHHeEEeCCCCHHHHHHHHHH
Confidence 48899999999999999999996666554445555555432210 1111 10010001111122221111111
Q ss_pred hchhhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccc-----
Q 026304 101 LGDDAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFG----- 153 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~----- 153 (240)
+. .-.+|+++++|..+.. .++...++.+ +++.+++||+++|-....+..|+
T Consensus 456 lv--~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~p 533 (2050)
T 3cmu_A 456 LA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 533 (2050)
T ss_dssp HH--HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEEC
T ss_pred HH--HhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCC
Confidence 10 1257999999987541 1234455555 45689999999997665544442
Q ss_pred -hHHHHHhhccceeeecc-eeeccC
Q 026304 154 -SVLDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 154 -~~~~L~~~ad~i~~l~~-~~~~~g 176 (240)
....|..+||-++.|+. .....+
T Consensus 534 sGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 534 TGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp SSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CCcchhhhhCCEEEEEEecccccCC
Confidence 23357889999999887 443344
No 228
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.70 E-value=1.5e-05 Score=65.16 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.+++|+||+||||||++ +.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~-~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC-KAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 568999999999999999 999763
No 229
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.68 E-value=0.00015 Score=63.84 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..-.++++|++|+|||||+ +.+.|.
T Consensus 166 ~~~~v~lvG~~gvGKSTLi-n~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLL-KALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHH-HHHCSS
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 4458999999999999999 999875
No 230
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.67 E-value=5e-05 Score=78.89 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=82.0
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc---ccCCCeEEEccCceecceecCcchhHHHhhch
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQKLGD 103 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~ 103 (240)
-+++|+++.|.||.|+|||||+++++......|..+..+...... +....++-.+.-.+....+..+.......+
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l-- 456 (1706)
T 3cmw_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL-- 456 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH--
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHH--
Confidence 488999999999999999999966665544455555555422100 000001100100001111111111111111
Q ss_pred hhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccch------H
Q 026304 104 DAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS------V 155 (240)
Q Consensus 104 ~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~------~ 155 (240)
..-.+|+++++|..+.. ..+.+.++++ +++.+++||+++|-...++..|+. .
T Consensus 457 v~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg 536 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 536 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred HHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCC
Confidence 01257999999998541 1123444444 455799999999976665554432 2
Q ss_pred HHHHhhccceeeecc-eeeccC
Q 026304 156 LDIIPLADTVTKLTA-RCELCG 176 (240)
Q Consensus 156 ~~L~~~ad~i~~l~~-~~~~~g 176 (240)
..|..+||-++.+.. .....+
T Consensus 537 ~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 537 NALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp SHHHHHEEEEEEEEEEEEEEET
T ss_pred cceeeeCCEEEEEEeccccccC
Confidence 456788998888876 433333
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.66 E-value=0.00011 Score=66.79 Aligned_cols=150 Identities=13% Similarity=-0.018 Sum_probs=82.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccC--CCeEEE---ccC-------
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYA--IDSVVT---HDG------- 83 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~--~~~~v~---q~~------- 83 (240)
|+.+.--+.+|+++.|.|+.|+|||||+++++......|..+..++-.. ..|.- ..++-. ..+
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~ 266 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASE 266 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence 4544446899999999999999999998566555444566666654221 00100 000000 000
Q ss_pred ---------------cee-cceecCcchhHHHhhchh-hhccCc--EEEEcCccC---------h----HHHHHHHHHHH
Q 026304 84 ---------------AKL-PCWALPELTSFRQKLGDD-AYAKLD--VIGIDEAQF---------F----EDLYEFCCNAA 131 (240)
Q Consensus 84 ---------------~~~-~~~~~~~~~~~~~~~~~~-l~~~p~--lllLDEP~~---------~----~~i~~~l~~l~ 131 (240)
.++ ....-.....+...+... .-.+++ ++++|--+. + .++...|+.++
T Consensus 267 ~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lA 346 (444)
T 3bgw_A 267 DWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMA 346 (444)
T ss_dssp CHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 000 000000111111111110 123788 999996532 1 24666777888
Q ss_pred hcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304 132 DHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 132 ~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~ 170 (240)
++.+++||+++|-...... .+-.+..+...||-|+.|..
T Consensus 347 ke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 347 RELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp HHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred HHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 7789999999995432211 11223356888999999986
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.65 E-value=1.8e-05 Score=63.99 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.5
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+..+|.+++|+||+||||||+. +.|..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~-~~L~~ 34 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI-KKVLS 34 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH-HHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH-HHHHH
Confidence 4678999999999999999999 88865
No 233
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.65 E-value=5.6e-05 Score=67.01 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=34.2
Q ss_pred EEcceeEe-e--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 12 TTNQVNSG-R--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 12 ~~~~ls~~-~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|+.. | +++++|++.+| +++|+|||||||||++ ++|.+
T Consensus 5 ~i~~L~l~~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll-~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTLNYRNLAPGTLNFPEG-VTGIYGENGAGKTNLL-EAAYL 48 (359)
T ss_dssp CEEEEEEESBTTCCSEEEECCSE-EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEeEEEEeCccceeeeEEEEcCC-eEEEECCCCCChhHHH-HHHHH
Confidence 34445543 3 78999999999 9999999999999999 99876
No 234
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.64 E-value=1.9e-05 Score=62.94 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++|+|+||||||||+ +.+.|..
T Consensus 31 kv~lvG~~g~GKSTLl-~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL-SRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 6899999999999999 9998864
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.62 E-value=2.1e-05 Score=63.20 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|+|+|||||||++ +.|++
T Consensus 3 ~i~i~G~~GsGKSTl~-~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA-QMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHH
Confidence 6899999999999999 99987
No 236
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.59 E-value=2.6e-05 Score=62.37 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++|+|+||||||||+ +.+.|..
T Consensus 7 kv~lvG~~g~GKSTLl-~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL-SRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 5799999999999999 9998864
No 237
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.56 E-value=0.00022 Score=59.17 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.1
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
....-+.|.||.|+||||++ +.++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la-~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA-KAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH-HHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHH
Confidence 44456889999999999999 98876
No 238
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.54 E-value=0.00066 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.1
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
..+..-+.|.||.|+|||||+ +.++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la-~ala~ 67 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLA-KAVAT 67 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHH-HHHHH
T ss_pred CCCCceEEEECCCCccHHHHH-HHHHH
Confidence 345567899999999999999 98876
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.52 E-value=5e-05 Score=60.26 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.5
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA 63 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~ 63 (240)
+...+|.+++|+|++||||||+. +.++.. ...|..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~-~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIA-TRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEE
Confidence 44568999999999999999999 988774 23344443
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.52 E-value=3.3e-05 Score=70.06 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=26.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
++.+++++||+||||||++ ..|++. .-.|..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~-~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA-GKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEE
Confidence 5899999999999999999 666654 4456665543
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.50 E-value=3.7e-05 Score=63.83 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=55.2
Q ss_pred cCcEE-EEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcc---cC-CCeEEEccC---ceecceecCcchhHHHh
Q 026304 29 NSGEI-HVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTR---YA-IDSVVTHDG---AKLPCWALPELTSFRQK 100 (240)
Q Consensus 29 ~~Ge~-~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~---~~-~~~~v~q~~---~~~~~~~~~~~~~~~~~ 100 (240)
.+|++ +.+.|+-|+||||++++....+.-.|.++....-....+ .. ..+ +.+.+ ..+......+ ..+..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~g-l~~~~~~~~~~~~~~~~e-~~l~~- 79 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNG-LPQQPLLRTEYRGMTLEE-MDLDA- 79 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTT-SCBCCCEEEEETTEEEEE-CCHHH-
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcC-ccccCcceeecCCccccc-ccHHH-
Confidence 35664 778899999999997466655566777664332111000 00 000 00000 0011111111 11111
Q ss_pred hchhhhccCcEEEEcCccCh-------HHHHHHHHHHHhcCCCEEEEEec
Q 026304 101 LGDDAYAKLDVIGIDEAQFF-------EDLYEFCCNAADHDGKTVVVAGL 143 (240)
Q Consensus 101 ~~~~l~~~p~lllLDEP~~~-------~~i~~~l~~l~~~~g~tvi~vtH 143 (240)
.+..+|+++++||+-.. ...++.+..+.. .|..++.++|
T Consensus 80 ---~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 80 ---LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp ---HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred ---HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 12358999999998431 123444444555 6888998887
No 242
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.50 E-value=4.2e-05 Score=65.77 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=24.3
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++.+++|.||+|||||||+ +.|.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla-~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTS-IQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 457899999999999999999 988875
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.50 E-value=3.8e-05 Score=62.36 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=26.0
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.+.+|.+++|+|++||||||+. +.|.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~-~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLA-VELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 45788999999999999999999 998874
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.48 E-value=5.8e-05 Score=59.59 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.8
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+|.+++|+|++||||||+. +.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~-~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQA-SRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46889999999999999999 88863
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.47 E-value=1.2e-05 Score=74.95 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=30.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++++++++ +|+.++|+||||+|||||+ ++|++..
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtla-r~ia~~l 132 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLA-KSIAKSL 132 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHH-HHHHHHH
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence 56788888 8999999999999999999 9998853
No 246
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.46 E-value=6.4e-05 Score=58.81 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.1
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+|..++|+|++|+|||||+ +.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl-~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLL-NALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 36889999999999999999 888874
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=5e-05 Score=70.16 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=29.6
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++++.+++| +.|+||||+|||||+ ++|++.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLa-raIa~~ 87 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGE 87 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHH-HHHHHH
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHH-HHHHHH
Confidence 67899999999 999999999999999 999875
No 248
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.41 E-value=6.4e-05 Score=64.79 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++.+++|+|++|+|||||+ +.|.|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLl-n~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLL-NKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHH-HHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 34558999999999999999 999885
No 249
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.00033 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.4
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+..+.|.||.|+||||++ +.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~-~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIV-EGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 34567899999999999999 877653
No 250
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=1.4e-05 Score=77.92 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=28.1
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++.+.+++.+.|+||+|+|||||. +.+++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~La-kala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLA-KAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHH-HHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHH-HHHHHHh
Confidence 3667789999999999999999999 9998753
No 251
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.38 E-value=0.00025 Score=55.10 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+..+.|.||.|+||||++ +.+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la-~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIV-EGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 34567899999999999999 877654
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.37 E-value=5.8e-05 Score=60.64 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+++|+|++||||||+. +.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla-~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG-EAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 458999999999999999 988753
No 253
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.36 E-value=8.4e-05 Score=65.48 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=23.4
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++.+++|+|++|||||||+ +.+.|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLl-n~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFI-EYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHH-HHHHHH
Confidence 34889999999999999999 999885
No 254
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.36 E-value=9.8e-05 Score=59.58 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.|.||.|+|||||+ +.+...
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 8999999999999999 888653
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.34 E-value=0.00026 Score=61.17 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=24.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEE
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIA 63 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~ 63 (240)
+.-+.|.||.|+|||+|+ ++|+... -.|..+.
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~ 185 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTT 185 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEE
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEE
Confidence 678999999999999999 8887642 3444443
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.34 E-value=0.00013 Score=62.94 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=32.7
Q ss_pred cC-CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 22 RV-GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 22 ~~-vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
++ ++++.+ |++++++|+||+||||++ ..+++. ...|.++...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~-~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTA-GKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHH-HHHHHHHHHTTCCEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence 45 888877 999999999999999999 777765 3345555543
No 257
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.0008 Score=59.15 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.5
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+..-+.|.||.|+|||||+ +.++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la-~aia~ 139 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG-KCIAS 139 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH-HHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHH
Confidence 34567999999999999999 98875
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.32 E-value=2.9e-05 Score=68.64 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=29.9
Q ss_pred ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++.+++.+++|++ ++|+|++||||||+. ++|++.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~-~~la~~ 47 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIA-EELCQI 47 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence 5667788899988 999999999999999 988874
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.32 E-value=0.00036 Score=60.90 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.9
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
--+++|.++.|.||.|+|||||. ..++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLA-lqlA 144 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLV-HALG 144 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHH-HHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHH-HHHH
Confidence 45778899999999999999999 5554
No 260
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.32 E-value=7.2e-05 Score=64.87 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.|.||+|+||||++ +.+++.
T Consensus 60 ~~ll~G~~G~GKT~la-~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTI-LALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 3899999999999999 988874
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.31 E-value=9.5e-05 Score=61.10 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.9
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
-.+|.+++|+|++||||||+. +.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~-~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVA-KIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHH-HHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 457889999999999999999 98875
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.30 E-value=0.00012 Score=57.36 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
|.++.|+|++||||||+. +.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a-~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV-RCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 578999999999999999 88864
No 263
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.00019 Score=64.97 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=32.3
Q ss_pred cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304 22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI 65 (240)
Q Consensus 22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~ 65 (240)
++++|+ +|++++++|+|||||||++ ..|++. ...|..+...
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~-~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEe
Confidence 467887 8999999999999999999 888775 3345555443
No 264
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.30 E-value=0.00011 Score=64.77 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=25.0
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|++++++++ .++|+|++|||||||+ +.+.|.
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLl-n~l~g~ 57 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVL-ESIVGK 57 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHH-HHHHTS
T ss_pred cccccccCC---EEEEECCCCCcHHHHH-HHHhCC
Confidence 677888888 8999999999999999 999994
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.29 E-value=0.00013 Score=56.50 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|++|+|||||+ +.+.|.
T Consensus 4 ~~v~lvG~~gvGKStL~-~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIF-NALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHCC
T ss_pred cEEEEECCCCCCHHHHH-HHHhCC
Confidence 36899999999999999 888875
No 266
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.29 E-value=6.8e-05 Score=60.04 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=28.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++++|+..++++ ++++|++|+|||||+ +.+.+-
T Consensus 16 l~~~~~~~~~~k-i~lvG~~~vGKSsLi-~~l~~~ 48 (198)
T 1f6b_A 16 LQFLGLYKKTGK-LVFLGLDNAGKTTLL-HMLKDD 48 (198)
T ss_dssp HHHHTCTTCCEE-EEEEEETTSSHHHHH-HHHSCC
T ss_pred HHHhhccCCCcE-EEEECCCCCCHHHHH-HHHhcC
Confidence 678889988885 689999999999999 888763
No 267
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.27 E-value=0.0012 Score=53.55 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=39.8
Q ss_pred ccCcEEEEcCccC--------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304 107 AKLDVIGIDEAQF--------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 107 ~~p~lllLDEP~~--------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~ 170 (240)
.+.++|+|||... .++++++|.+- - ....||+++...... |.++||.|-.|..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p-~~~~vIlTGr~ap~~---------l~e~AD~VTem~~ 179 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR-P-GHQTVIITGRGCHRD---------ILDLADTVSELRP 179 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-C-TTCEEEEECSSCCHH---------HHHHCSEEEECCC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-c-CCCEEEEECCCCcHH---------HHHhCcceeeecc
Confidence 5789999999943 35677776542 2 467999999986443 3799999999987
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.27 E-value=0.00013 Score=56.53 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|+|++||||||+. +.|..
T Consensus 3 ~i~l~G~~GsGKsT~~-~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA-AKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 88864
No 269
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.26 E-value=0.00065 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+..-+.|.||.|+|||+|+ +.++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la-~aia~ 73 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLA-KAVAT 73 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHH-HHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH-HHHHH
Confidence 34557899999999999999 98875
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.24 E-value=0.00017 Score=57.02 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.2
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.++.|.|++||||||+. +.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~-~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLS-QALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 56889999999999999999 88864
No 271
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.23 E-value=0.00013 Score=61.08 Aligned_cols=32 Identities=25% Similarity=0.093 Sum_probs=27.2
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++.+ ...++.++.|+|++||||||+. +.|..
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla-~~L~~ 54 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIH-RIKQK 54 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHH-HHHHH
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 44554 6788999999999999999999 88875
No 272
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.23 E-value=0.0012 Score=59.92 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.0
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+..-+.|.||.|+|||||+ +.++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA-~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLA-KAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence 44567899999999999999 988763
No 273
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.00052 Score=61.62 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=55.7
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhh
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA 105 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l 105 (240)
..-++| +.+.||.|+|||+|. +.+++.. |.++........ ...+.......+...+....
T Consensus 179 i~~prG--vLL~GPPGTGKTllA-kAiA~e~--~~~f~~v~~s~l---------------~sk~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 179 IAQPKG--VILYGPPGTGKTLLA-RAVAHHT--DCKFIRVSGAEL---------------VQKYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCCCC--EEEESCSSSSHHHHH-HHHHHHH--TCEEEEEEGGGG---------------SCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCc--eEEeCCCCCCHHHHH-HHHHHhh--CCCceEEEhHHh---------------hccccchHHHHHHHHHHHHH
Confidence 334455 889999999999999 9998632 223222221110 00000000011122222233
Q ss_pred hccCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 106 YAKLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 106 ~~~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
...|-+|++||-.+ ...+..+|.++- ...+..||.+|..++.+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 46899999999843 112444444442 23466788999877654
No 274
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.20 E-value=0.00059 Score=54.29 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+.|.||.|+||||++ +.+..
T Consensus 40 ~~ll~G~~G~GKT~l~-~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA-IALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 3899999999999999 87765
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.19 E-value=0.00019 Score=55.40 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026304 33 IHVIMGPMFAGKTTALLRRI 52 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i 52 (240)
+++|.||+||||||+. +.|
T Consensus 3 ~I~l~G~~GsGKsT~a-~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA-KLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHH-HHH
Confidence 7899999999999999 888
No 276
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00015 Score=57.47 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=19.3
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++++++..++. .++++|++|+|||||+ +.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli-~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLL-HMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHH-HHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHH-HHHhc
Confidence 68889888877 6789999999999999 77765
No 277
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.19 E-value=0.0016 Score=57.30 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+..-+.|.||.|+|||||+ +.++..
T Consensus 83 ~~~~iLL~GppGtGKT~la-~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLA-KAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCcHHHHH-HHHHHH
Confidence 3445889999999999999 988763
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.00017 Score=56.79 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=22.6
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
...++.++.|+|++||||||+. +.+.
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~-~~l~ 32 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLG-KELA 32 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHH-HHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHH-HHHH
Confidence 3456788999999999999999 8886
No 279
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.18 E-value=0.0029 Score=56.11 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++.-+.|.||.|+|||+|+ +.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la-~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA-KAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH-HHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 98864
No 280
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0007 Score=61.43 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=56.2
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
+++-.=+.+.||.|+|||+|. +.+++.. |.++...+.... ...+.......+...+......
T Consensus 212 ~~~prGvLL~GPPGtGKTllA-kAiA~e~--~~~~~~v~~s~l---------------~sk~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLA-KAVAATI--GANFIFSPASGI---------------VDKYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGGT---------------CCSSSSHHHHHHHHHHHHHHHS
T ss_pred CCCCCeEEEECCCCCcHHHHH-HHHHHHh--CCCEEEEehhhh---------------ccccchHHHHHHHHHHHHHHhc
Confidence 344455889999999999999 9998632 233322221110 0000000011112222223356
Q ss_pred cCcEEEEcCccC---------------hH-HHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 108 KLDVIGIDEAQF---------------FE-DLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 108 ~p~lllLDEP~~---------------~~-~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
.|-+|++||-.+ .. .+..+|.++- ...+..||.+|..++.+
T Consensus 274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 899999999843 11 2344555542 22356888999877654
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.17 E-value=0.00018 Score=56.60 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
|.+++|.|++||||||+. +.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~-~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS-QLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHH
Confidence 678999999999999999 88865
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.00057 Score=72.00 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=81.0
Q ss_pred ecCCCC--cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCcee-cceec
Q 026304 21 DRVGLP--HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKL-PCWAL 91 (240)
Q Consensus 21 l~~vsl--~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~-~~~~~ 91 (240)
|+.+.- -+++|+++.|.|+.|+|||||+++++......|..+..++-... .+.+ + ..++..+ +..++
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG---~-~~~~l~i~~~~~i 795 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---V-DIDNLLCSQPDTG 795 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTT---C-CTTTCEEECCSSH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcC---C-CccceEEecCCCH
Confidence 444442 58899999999999999999994544434444545555432210 1111 1 0011111 11122
Q ss_pred CcchhHHHhhchhhhccCcEEEEcCccC---------------h-------HHHHHHHHHHHhcCCCEEEEEecChhhhh
Q 026304 92 PELTSFRQKLGDDAYAKLDVIGIDEAQF---------------F-------EDLYEFCCNAADHDGKTVVVAGLDGDYLR 149 (240)
Q Consensus 92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~---------------~-------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~ 149 (240)
.+.......+.. -..|+++++|+-+. + .++...|+.++++.+++||+++|-.....
T Consensus 796 ~~i~~~~r~l~~--~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e 873 (2050)
T 3cmu_A 796 EQALEICDALAR--SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 873 (2050)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred HHHHHHHHHHhh--ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence 222222111111 14799999999432 1 12444677788778999999999888777
Q ss_pred cccc------hHHHHHhhccceeeecc
Q 026304 150 RSFG------SVLDIIPLADTVTKLTA 170 (240)
Q Consensus 150 ~~f~------~~~~L~~~ad~i~~l~~ 170 (240)
..|+ .-..+...++-.+.|..
T Consensus 874 ~~fgdp~~p~GG~~l~h~a~~Rl~Lrr 900 (2050)
T 3cmu_A 874 VMFGNPETTTGGNALKFYASVRLDIRR 900 (2050)
T ss_dssp CCSSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred hhcCCCccccCCceeeeeeeEEEEEEe
Confidence 7774 22244555555555543
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00019 Score=60.26 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|+||||||||||. +.|++
T Consensus 2 ~li~I~G~~GSGKSTla-~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMA-IQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCcCHHHHH-HHHHh
Confidence 47899999999999999 88765
No 284
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00018 Score=62.78 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+..+.|.||.|+|||||+ +.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~-~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA-RLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH-HHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHH
Confidence 56678999999999999999 888653
No 285
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.15 E-value=0.0006 Score=62.75 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.7
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.+..-+.|.||+|+|||+++ +.++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lA-raia~ 260 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIA-RAVAN 260 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHH-HHHHH
Confidence 344556899999999999999 99865
No 286
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.14 E-value=5.7e-05 Score=66.86 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=29.2
Q ss_pred eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.+.+++..| +++++|.| +|+|++|+|||||+ +.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLl-n~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHH-HHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHH-HHHhCC
Confidence 57777777766 56777776 99999999999999 998764
No 287
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.00023 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|++|+|||||+ +.+.+.
T Consensus 8 ~~i~lvG~~gvGKStL~-~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIF-NALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTT
T ss_pred CEEEEECCCCCCHHHHH-HHHhCC
Confidence 36899999999999999 888773
No 288
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=5.3e-05 Score=66.06 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=30.5
Q ss_pred ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCch
Q 026304 21 DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 21 l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
++.++..+..|++ +.+.||+|+||||++ +++++..
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla-~~la~~l 70 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTI-VALAREI 70 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 5667778889988 999999999999999 9998853
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.11 E-value=0.00024 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|++|+|||||+ +.+.+.
T Consensus 4 kv~ivG~~gvGKStLl-~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL-QQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHH-HHHTCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 4789999999999999 888874
No 290
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.11 E-value=0.00087 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.0
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+..-+.|.||.|+||||++ +.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la-~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALA-AKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence 45568899999999999999 988753
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.10 E-value=0.00022 Score=56.73 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA 63 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~ 63 (240)
.+++|+|++|||||||+ +.|.+. .-.|..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~-~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL-KKLIPALCARGIRPG 38 (174)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEE
T ss_pred eEEEEEeCCCCCHHHHH-HHHHHhccccCCcee
Confidence 58999999999999999 777664 23344443
No 292
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.10 E-value=0.0003 Score=57.09 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+-+++|.|++||||||+. +.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~-~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVA-NAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 4578999999999999999 99875
No 293
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00078 Score=60.96 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL 109 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p 109 (240)
+-.=+.+.||.|+|||+|. +.+++.. |.++..+..... ...+.......+...+.......|
T Consensus 205 ~prGiLL~GPPGtGKT~la-kAiA~~~--~~~~~~v~~~~l---------------~~~~~Ge~e~~ir~lF~~A~~~aP 266 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV-KAVANST--KAAFIRVNGSEF---------------VHKYLGEGPRMVRDVFRLARENAP 266 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH-HHHHHHH--TCEEEEEEGGGT---------------CCSSCSHHHHHHHHHHHHHHHTCS
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHh--CCCeEEEecchh---------------hccccchhHHHHHHHHHHHHHcCC
Confidence 3344889999999999999 9998632 333322221110 000000000111222222334689
Q ss_pred cEEEEcCccC---------------h-HHHHHHHHHH---HhcCCCEEEEEecChhhh
Q 026304 110 DVIGIDEAQF---------------F-EDLYEFCCNA---ADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 110 ~lllLDEP~~---------------~-~~i~~~l~~l---~~~~g~tvi~vtHd~~~~ 148 (240)
-++++||-.+ . ..+.++|.++ ....+..||++|..++.+
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999832 1 1233444443 233467888999877654
No 294
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.09 E-value=0.0027 Score=53.90 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=21.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++..+.|.||.|+||||++ +.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la-~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA-LKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence 34557999999999999999 888764
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.08 E-value=0.00038 Score=55.09 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEee
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMI 65 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~ 65 (240)
.+++|+|++|||||||+ ..|.. +.-.|.++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~-~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM-EKWVAAAVREGWRVGTV 38 (169)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHH-HHHHHhhHhcCCeeeEE
Confidence 37899999999999999 65554 33445554443
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.05 E-value=0.00031 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|.+++|.|+.||||||+. +.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~-~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC-MNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence 6789999999999999999 88865
No 297
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.04 E-value=0.0003 Score=55.93 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|++||||||+. +.|..
T Consensus 2 ~I~i~G~~GsGKsT~~-~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS-AEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHH
Confidence 6899999999999999 88875
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00092 Score=60.44 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=55.3
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcc-hhHHHhhchhhh
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPEL-TSFRQKLGDDAY 106 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~-~~~~~~~~~~l~ 106 (240)
+++-.=+.+.||.|+|||+|. +.+++.. +..+..+..... ...+ +.+. ..+...+.....
T Consensus 213 i~~prGvLLyGPPGTGKTlLA-kAiA~e~--~~~fi~v~~s~l---------------~sk~-vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLA-KAVANQT--SATFLRIVGSEL---------------IQKY-LGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHH-HHHHHHH--TCEEEEEESGGG---------------CCSS-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHH-HHHHHHh--CCCEEEEEHHHh---------------hhcc-CchHHHHHHHHHHHHHh
Confidence 333345899999999999999 9998632 222222211110 0000 1111 111122222234
Q ss_pred ccCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 107 AKLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 107 ~~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
..|-+|++||..+ ...+..+|.++- ...+..||.+|..++.+
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 6899999999843 112444454442 22456788999887665
No 299
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00066 Score=61.53 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=55.1
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
+++-.=+.+.||.|+|||+|. +.+++.. |..+..++.... ...+.......+...+......
T Consensus 212 ~~~prGvLLyGPPGTGKTllA-kAiA~e~--~~~f~~v~~s~l---------------~~~~vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLA-RACAAQT--NATFLKLAAPQL---------------VQMYIGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGGG---------------CSSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHH-HHHHHHh--CCCEEEEehhhh---------------hhcccchHHHHHHHHHHHHHhc
Confidence 444455889999999999999 9998732 233322221110 0000000001111222222346
Q ss_pred cCcEEEEcCccC---------------h-HHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 108 KLDVIGIDEAQF---------------F-EDLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 108 ~p~lllLDEP~~---------------~-~~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
.|-+|++||-.+ . ..+..+|..+- ...+..||.+|..++.+
T Consensus 274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 899999999832 0 12334444442 22456788899877654
No 300
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.04 E-value=0.00032 Score=60.03 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=23.0
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.-..|.++.|.||+||||||+. +.+..
T Consensus 29 ~~~~~~livl~G~sGsGKSTla-~~L~~ 55 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLR-SAIFE 55 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHH-HHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4456889999999999999999 87753
No 301
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00039 Score=55.59 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|.+++|.|+.||||||+. +.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~-~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA-TLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 4789999999999999999 88865
No 302
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00032 Score=58.38 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
-+++|.||+||||||+. +.|+.
T Consensus 10 ~~i~i~G~~GsGKsTla-~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS-RGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHH
Confidence 48999999999999999 98873
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.01 E-value=0.00032 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+..+.|+|++||||||+. +.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a-~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVG-SQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHH
Confidence 3568999999999999999 88863
No 304
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.00 E-value=0.00041 Score=55.21 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+++|+|++||||||+. +.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~-~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVA-ALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHT
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHC
Confidence 468999999999999999 988764
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.00 E-value=0.00039 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.|.|++||||||+. +.|..
T Consensus 3 ~~I~i~G~~GsGKST~a-~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA-REFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEecCCCCCHHHHH-HHHHh
Confidence 57899999999999999 88864
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.99 E-value=0.00034 Score=54.77 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|++||||||+. +.|+.
T Consensus 6 ~i~i~G~~GsGKsTla-~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA-RALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHH
Confidence 5899999999999999 88864
No 307
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.002 Score=48.88 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.+.-+.|.||.|+|||++. +.+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA-~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA-RYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH-GGGCCT
T ss_pred CCCcEEEECCCCccHHHHH-HHHHHh
Confidence 4456889999999999999 888753
No 308
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.98 E-value=0.00086 Score=57.34 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
....+.|.||.|+|||+|. +.++..
T Consensus 35 ~p~~lLl~GppGtGKT~la-~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQC-ELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 3346788899999999999 998763
No 309
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.97 E-value=0.00035 Score=56.13 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 026304 33 IHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~ 53 (240)
.+.|+||+|||||||+ +.|.
T Consensus 3 pIVi~GPSG~GK~Tl~-~~L~ 22 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLL-KKLF 22 (186)
T ss_dssp CEEEECCTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 3789999999999999 7664
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.00039 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.0
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.+++|+|+.||||||+. +.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC-EKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 46789999999999999999 88864
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.96 E-value=0.00039 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.8
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
..+|.+++|.|+.||||||+. +.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~-~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQS-KLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHH-HHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 356889999999999999999 88865
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00045 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++.+++|.|++||||||+. +.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a-~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQC-ARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 3678999999999999998 87753
No 313
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.96 E-value=0.00067 Score=62.37 Aligned_cols=144 Identities=15% Similarity=0.063 Sum_probs=80.5
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccch-----hccc--CCCeEEEc-----------------
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSK-----DTRY--AIDSVVTH----------------- 81 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~-----~~~~--~~~~~v~q----------------- 81 (240)
-+.+|+++.|.|+.|+|||||+++++...... |..+..++-.. ..|. ...++-.+
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 48899999999999999999985655544333 66665543211 0010 00000000
Q ss_pred -------cCcee-cceec-CcchhHHHhhchh-hhccCcEEEEcCccC-------------hHHHHHHHHHHHhcCCCEE
Q 026304 82 -------DGAKL-PCWAL-PELTSFRQKLGDD-AYAKLDVIGIDEAQF-------------FEDLYEFCCNAADHDGKTV 138 (240)
Q Consensus 82 -------~~~~~-~~~~~-~~~~~~~~~~~~~-l~~~p~lllLDEP~~-------------~~~i~~~l~~l~~~~g~tv 138 (240)
...++ ..... .....+...+... .-.+|+++++|=-+. ..+++..|+.++++.+++|
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~v 397 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVL 397 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeE
Confidence 00000 00000 0111111111111 124799999995432 1257778888889889999
Q ss_pred EEEecChhhhh------------cccchHHHHHhhccceeeecc
Q 026304 139 VVAGLDGDYLR------------RSFGSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 139 i~vtHd~~~~~------------~~f~~~~~L~~~ad~i~~l~~ 170 (240)
|+++|-...-. ..+..+..+...||-|+.|..
T Consensus 398 i~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 398 VVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp EEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred EEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 99999975110 012234567788999999976
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.92 E-value=0.0031 Score=51.01 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.7
Q ss_pred cCcEEEEcCccCh---H-------HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 108 KLDVIGIDEAQFF---E-------DLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 108 ~p~lllLDEP~~~---~-------~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
...+|++||.+.. . +++..+..-.. .+..||++|++.+.+
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~-~~~~iil~tq~~~~l 136 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRH-QGIDIFVLTQGPKLL 136 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTT-TTCEEEEEESCGGGB
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCc-CCeEEEEECCCHHHH
Confidence 4789999999663 1 33333333333 578999999997655
No 315
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.92 E-value=0.0088 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
..+.|.||.|+||||++ +.++.
T Consensus 56 ~~vll~G~~GtGKT~la-~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA-NIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHH
T ss_pred CeEEEECcCCCCHHHHH-HHHHH
Confidence 35899999999999999 98864
No 316
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.92 E-value=0.0011 Score=52.56 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|++|+|||||+ +.+.|
T Consensus 8 kv~lvG~~~vGKSsL~-~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLA-NIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5899999999999999 77765
No 317
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.91 E-value=0.00045 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.4
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
..+|.+++|.|+.||||||+. +.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~-~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQS-RKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 356889999999999999999 88864
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.88 E-value=0.00023 Score=57.31 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+++|.|++||||||++ +.|...
T Consensus 2 ~I~i~G~~GsGKsTl~-~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV-EKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHH-HHHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHHH
Confidence 6899999999999999 888653
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00053 Score=53.93 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|++||||||+. +.|..
T Consensus 3 ~I~i~G~~GsGKsT~~-~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL-AKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 88865
No 320
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.86 E-value=0.0051 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEee
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMI 65 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~ 65 (240)
++.+++++|++|+||||++ ..|+. +.-.|+++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~-~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTV-AKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence 4789999999999999998 55544 34456666544
No 321
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.85 E-value=0.00035 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.9
Q ss_pred cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 27 HRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.+.+++|.|+.||||||+. +.|..
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a-~~L~~ 34 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQC-EKLVE 34 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 3456789999999999999999 88864
No 322
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0012 Score=60.27 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=55.4
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
+++-.=+.+.||.|+|||+|. +.+++.. +..+....... +...+.......+...+......
T Consensus 240 i~pprGILLyGPPGTGKTlLA-kAiA~e~--~~~fi~vs~s~---------------L~sk~vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCA-RAVANRT--DATFIRVIGSE---------------LVQKYVGEGARMVRELFEMARTK 301 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHH-HHHHHHH--TCEEEEEEGGG---------------GCCCSSSHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHH-HHHHhcc--CCCeEEEEhHH---------------hhcccCCHHHHHHHHHHHHHHhc
Confidence 344455889999999999999 9998632 22222221111 00000000001122222223356
Q ss_pred cCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304 108 KLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 108 ~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~ 148 (240)
.|-+|++||-.+ ...+..+|.++- ...+..||.+|..++.+
T Consensus 302 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 899999999843 112444555542 22356778888876654
No 323
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.84 E-value=0.0024 Score=51.02 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 026304 33 IHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~ 53 (240)
++.|+|+.||||||+. ..+.
T Consensus 1 ~ilV~Gg~~SGKS~~A-~~la 20 (180)
T 1c9k_A 1 MILVTGGARSGKSRHA-EALI 20 (180)
T ss_dssp CEEEEECTTSSHHHHH-HHHH
T ss_pred CEEEECCCCCcHHHHH-HHHH
Confidence 3689999999999998 5554
No 324
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.80 E-value=0.00058 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.++|+|++|+|||||+ +.|.|..
T Consensus 31 ~i~lvG~~g~GKStli-n~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATG-NSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTSC
T ss_pred EEEEECCCCCCHHHHH-HHHcCCC
Confidence 6899999999999999 9998853
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.79 E-value=0.0016 Score=63.29 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=54.7
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA 107 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (240)
+.+-.-+.|.||.|+|||+|. +.+++.. |..+...+.... ...+.......+...+......
T Consensus 235 ~~~p~GILL~GPPGTGKT~LA-raiA~el--g~~~~~v~~~~l---------------~sk~~gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIA-RAVANET--GAFFFLINGPEI---------------MSKLAGESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHH-HHHHTTT--TCEEEEEEHHHH---------------HSSCTTHHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHHh--CCeEEEEEhHHh---------------hcccchHHHHHHHHHHHHHHHc
Confidence 344445889999999999999 9998632 222222211100 0000000001112222223346
Q ss_pred cCcEEEEcCccC------------hH----HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304 108 KLDVIGIDEAQF------------FE----DLYEFCCNAADHDGKTVVVAGLDGDYL 148 (240)
Q Consensus 108 ~p~lllLDEP~~------------~~----~i~~~l~~l~~~~g~tvi~vtHd~~~~ 148 (240)
.|-+|++||-.+ .. +++..+..+....+..||.+|..++.+
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 899999999843 11 233333343333467788888877554
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00041 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=16.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
++.++.|.|++||||||+. +.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a-~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA-HTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHH
Confidence 5678999999999999999 8885
No 327
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.78 E-value=0.00067 Score=53.67 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI-QLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 88764
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00074 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|-+++|+|+.||||||+. +.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a-~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA-PNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 5678999999999999999 88864
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.00063 Score=54.31 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|++||||||+. +.|+.
T Consensus 4 ~i~i~G~~GsGKst~~-~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA-RRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 8999999999999999 98875
No 330
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.00095 Score=52.41 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
...+++|.|+.||||||+. +.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~-~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQC-ANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHH
Confidence 3568999999999999998 88754
No 331
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00094 Score=61.66 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
...+.|.||.|+||||++ +.++..
T Consensus 77 ~~~lLL~GppGtGKTtla-~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA-HLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHH
Confidence 468999999999999999 988753
No 332
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.00064 Score=60.89 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=25.1
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.+..|..++|+|+||+|||||+ +.|.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~-n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFF-NVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHH-HHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 35677888999999999999999 999885
No 333
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.00056 Score=56.36 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.6
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRI 52 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i 52 (240)
+.+|+.+++.||+||||||++ ..+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~-~~~ 96 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQV-PQF 96 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHH-HHH
T ss_pred HhcCCEEEEEeCCCCCcHHhH-HHH
Confidence 557999999999999999987 544
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.69 E-value=0.0011 Score=60.33 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.0
Q ss_pred ccCcEE--EEEEcCCCCcHHHHHHHHHcCc
Q 026304 28 RNSGEI--HVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 28 i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+..|.+ +.|.||.|+|||||+ +.|+..
T Consensus 45 i~~~~~~~vLL~GppGtGKTtlA-r~ia~~ 73 (447)
T 3pvs_A 45 IEAGHLHSMILWGPPGTGKTTLA-EVIARY 73 (447)
T ss_dssp HHHTCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred HHcCCCcEEEEECCCCCcHHHHH-HHHHHH
Confidence 444554 899999999999999 999763
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.0011 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.4
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
-....+++|.|+.||||||+. +.|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~-~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQC-EKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHH-HHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH-HHHH
Confidence 345678999999999999998 8776
No 336
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.68 E-value=0.00076 Score=59.73 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCch
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
+++|+|++|||||||+ +.+.|..
T Consensus 181 ~V~lvG~~naGKSTLl-n~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLF-NSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHH-HHHHCC-
T ss_pred EEEEECCCCCCHHHHH-HHHHCCC
Confidence 3999999999999999 9998863
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.66 E-value=0.00091 Score=52.64 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|+.||||||+. +.+..
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA-KKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 88864
No 338
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.66 E-value=0.00086 Score=56.47 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|++|||||||+ +.+.|.
T Consensus 5 ~i~lvG~~g~GKTTL~-n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIF-NALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 5899999999999999 999885
No 339
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.66 E-value=0.00084 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.271 Sum_probs=20.5
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.+++|.|+.||||||+. +.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a-~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVS-SRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH-HHHHH
Confidence 35678999999999999999 88863
No 340
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.66 E-value=0.00077 Score=60.95 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|+||+|||||+ +.+.|.
T Consensus 181 ~kvaivG~~gvGKSTLl-n~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLF-NAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred ceEEEECCCCCCHHHHH-HHHhCC
Confidence 47999999999999999 999885
No 341
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.65 E-value=0.00091 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++++|+|+.||||||+. +.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva-~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA-QELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHH
Confidence 58999999999999999 88864
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.00075 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+.+++|+|++||||||+. +.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~-~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC-ELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4567999999999999999 88864
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.63 E-value=0.00097 Score=53.78 Aligned_cols=21 Identities=38% Similarity=0.289 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+||.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA-EQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4789999999999999 88853
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.61 E-value=0.0011 Score=53.07 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+-+++|+|+.||||||+. +.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a-~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA-VKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 88864
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0013 Score=55.21 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.++.|.|++||||||+. +.|..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla-~~La~ 26 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFS-KNLAK 26 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHH-HHHHH
Confidence 35678999999999999999 88865
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.59 E-value=0.00091 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|+|+.||||||+. +.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG-RELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHH
Confidence 36899999999999999 88864
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.58 E-value=0.0012 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG-SLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 5899999999999999 88864
No 348
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.56 E-value=0.0012 Score=53.23 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
--+++|+|+.||||||+. +.+..
T Consensus 12 ~~iIgltG~~GSGKSTva-~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC-EILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 358999999999999999 88864
No 349
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.0085 Score=51.28 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCcE
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDV 111 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l 111 (240)
..+.+.||.|+||||++ +.++... +.++..++... .....+.+...-... ......++.+
T Consensus 49 ~~~L~~G~~G~GKT~la-~~la~~l--~~~~~~i~~~~----------------~~~~~i~~~~~~~~~-~~~~~~~~~v 108 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA-KALCHDV--NADMMFVNGSD----------------CKIDFVRGPLTNFAS-AASFDGRQKV 108 (324)
T ss_dssp SEEEECSSTTSSHHHHH-HHHHHHT--TEEEEEEETTT----------------CCHHHHHTHHHHHHH-BCCCSSCEEE
T ss_pred eEEEeeCcCCCCHHHHH-HHHHHHh--CCCEEEEcccc----------------cCHHHHHHHHHHHHh-hcccCCCCeE
Confidence 36777788999999999 8886422 32322221100 000000000000000 0011237899
Q ss_pred EEEcCccCh--HHHHHHHHHHHhc--CCCEEEEEecChhh
Q 026304 112 IGIDEAQFF--EDLYEFCCNAADH--DGKTVVVAGLDGDY 147 (240)
Q Consensus 112 llLDEP~~~--~~i~~~l~~l~~~--~g~tvi~vtHd~~~ 147 (240)
|++||.... ....+.|.++.++ .+..+|++|.+...
T Consensus 109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 999999763 3333333333221 35678888877653
No 350
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.55 E-value=0.0012 Score=53.37 Aligned_cols=20 Identities=45% Similarity=0.311 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 026304 33 IHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~ 53 (240)
.++|+||.||||||+. +.|.
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG-ERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 4789999999999999 8885
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.50 E-value=0.0013 Score=54.74 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
--+++|.|++||||||+. +.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a-~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC-AKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHH
T ss_pred cEEEEEECCCCCCHHHHH-HHHHH
Confidence 358999999999999999 88754
No 352
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.00097 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|+|+.||||||+. +.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG-RRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHH
Confidence 36899999999999998 88764
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.48 E-value=0.0013 Score=51.41 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.-.++++|++|+|||||+ +.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~-~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLL-KQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHH-HHHCCS
T ss_pred ceEEEEECCCCCCHHHHH-HHHhcC
Confidence 346899999999999999 888764
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.46 E-value=0.0014 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.|.
T Consensus 4 ki~~vG~~~~GKSsli-~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA-RIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHCCC
T ss_pred EEEEECCCCCCHHHHH-HHHcCc
Confidence 4789999999999999 888764
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.44 E-value=0.0018 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++-+++|+||.||||||+. +.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a-~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQS-LNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 46779999999999999999 88753
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0014 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+.
T Consensus 50 ~i~vvG~~g~GKSsll-~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLL-TLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 7899999999999999 888764
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.42 E-value=0.0016 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+++|.|++||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG-NLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999999 88764
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~-~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA-SLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCccHHHHH-HHHhcC
Confidence 4899999999999999 888764
No 359
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.37 E-value=0.0019 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~-~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL-LRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHCSC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5789999999999999 888764
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.36 E-value=0.0015 Score=49.68 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~-~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI-QRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 4789999999999999 777653
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0018 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV-LRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTC
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 5789999999999999 877763
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.35 E-value=0.0033 Score=58.88 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeec
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIK 66 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~ 66 (240)
.+.++.|.||.|+||||++ +.+... .-.|..+....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEec
Confidence 3679999999999999999 666553 34566555543
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.35 E-value=0.0013 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.313 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.-.++++|++|+|||||+ +.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli-~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTIL-YRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred CccEEEEECCCCCCHHHHH-HHHhc
Confidence 4557999999999999999 87764
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.33 E-value=0.0022 Score=54.55 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
..-+++|.|++||||||+. +.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva-~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVA-QRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHH-HHHH
T ss_pred CCEEEEEECCCCCCHHHHH-HHHH
Confidence 3468999999999999999 8887
No 365
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.33 E-value=0.0016 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF-NRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 4789999999999999 777653
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.32 E-value=0.0019 Score=49.24 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+.
T Consensus 4 ki~ivG~~~~GKSsli-~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA-GTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHHhc
Confidence 3789999999999999 888654
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0025 Score=52.30 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.0
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+-.+.+..++.|+||.||||||.. +.|+.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa-~~L~~ 51 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQC-EKLVQ 51 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHH-HHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 3445677889999999999999998 77764
No 368
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.31 E-value=0.0016 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~-~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT-IQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 4789999999999999 777653
No 369
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.31 E-value=0.0017 Score=49.10 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKSsli-~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT-VQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5799999999999999 76654
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.30 E-value=0.0021 Score=56.99 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=41.6
Q ss_pred cCcEEEEcCccC---------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc--chHHHHHhhccceeeecc
Q 026304 108 KLDVIGIDEAQF---------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF--GSVLDIIPLADTVTKLTA 170 (240)
Q Consensus 108 ~p~lllLDEP~~---------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f--~~~~~L~~~ad~i~~l~~ 170 (240)
.|.++++||... ...+.+++++.++ .|..++++||.++.+...- +....+...|+..+++..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 578999999843 1235566666665 7999999999998763210 013456667777777764
No 371
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.29 E-value=0.013 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|++|+|||||+ +.+.|-
T Consensus 25 ~V~lvG~~nvGKSTL~-n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIF-NRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHH-HHHEEE
T ss_pred EEEEECCCCCcHHHHH-HHHhCC
Confidence 7999999999999999 999874
No 372
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.29 E-value=0.0079 Score=58.85 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
..+.|+||+|+|||++. +.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA-~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA-KTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 57899999999999999 99987644
No 373
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.29 E-value=0.0021 Score=54.45 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|++|+|||||+ +.+.|.
T Consensus 5 kI~lvG~~nvGKSTL~-n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLF-NLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5899999999999999 999885
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.27 E-value=0.0019 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|-+++|+|+.||||||+. +.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a-~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC-EFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 3567899999999999999 88864
No 375
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.27 E-value=0.0018 Score=49.01 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 6 ~i~v~G~~~~GKssl~-~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT-LQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 77765
No 376
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.26 E-value=0.0019 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli-~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM-WRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 4789999999999999 777664
No 377
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.26 E-value=0.0011 Score=56.80 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=17.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++-+++|.||+||||||+. +.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva-~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVK-HTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 4558999999999999999 88765
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.25 E-value=0.0018 Score=49.31 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL-VRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 4789999999999999 777654
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0019 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV-LRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 4789999999999999 777653
No 380
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.25 E-value=0.0019 Score=50.62 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|+.|+|||||+ +.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli-~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI-NSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHH-HHHHTC
T ss_pred CEEEEECCCCCCHHHHH-HHHhCC
Confidence 46899999999999999 877764
No 381
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.25 E-value=0.0022 Score=51.85 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA-QFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4789999999999999 88864
No 382
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.25 E-value=0.0019 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli-~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM-HRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5899999999999999 777653
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.25 E-value=0.0019 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV-LRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 5789999999999999 777653
No 384
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.23 E-value=0.002 Score=50.26 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli-~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL-NALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHTS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6899999999999999 877664
No 385
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.23 E-value=0.0027 Score=48.80 Aligned_cols=25 Identities=40% Similarity=0.458 Sum_probs=21.0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.-.++++|+.|+|||||+ +.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~-~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLL-DAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHH-HHHHTT
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 4457899999999999999 877663
No 386
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.23 E-value=0.0029 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.137 Sum_probs=23.3
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.-....++.|+|++||||||+. +.+..
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla-~~L~~ 280 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFI-QEHLV 280 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHH-HHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHH-HHHHH
Confidence 44456789999999999999999 88754
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.22 E-value=0.0021 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI-YRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHhCc
Confidence 3789999999999999 877764
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.20 E-value=0.002 Score=48.83 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 5 ki~v~G~~~~GKssli-~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT-VQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 77765
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.20 E-value=0.0026 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++.|+|++||||||+. +.|..
T Consensus 3 ~~I~l~G~~GsGKST~a-~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA-REFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHH
Confidence 57899999999999999 88764
No 390
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.20 E-value=0.0021 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli-~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM-NRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 4799999999999999 777653
No 391
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.17 E-value=0.0031 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.7
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
-+|.++.|.|+.||||||++ +.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~-~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR-DYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH-HHHHH
Confidence 46899999999999999999 87754
No 392
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.17 E-value=0.0021 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 11 ~i~v~G~~~~GKssli-~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALT-IQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5899999999999999 777654
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.16 E-value=0.0027 Score=53.86 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
...+.|.||+|+||||++ +.+++..
T Consensus 47 ~~~~ll~G~~GtGKt~la-~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA-KTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHH-HHHHHHH
T ss_pred ceEEEEECCCCcCHHHHH-HHHHHHH
Confidence 468999999999999999 9998854
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.13 E-value=0.0029 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+..+.|+|+.||||||+. +.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a-~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA-PKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 88864
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.12 E-value=0.0033 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++.+++|+||+|||||||. ..|+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa-~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS-IDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHT
T ss_pred CCceEEEECCCCCCHHHHH-HHHHH
Confidence 5679999999999999999 66654
No 396
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.12 E-value=0.034 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
.+.+.||.|+|||++. +.++....
T Consensus 523 ~~Ll~Gp~GtGKT~lA-~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA-RALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhc
Confidence 6899999999999999 99987543
No 397
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.12 E-value=0.0032 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.4
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRI 52 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i 52 (240)
.|..++|+||+|||||||.+.++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999993433
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.12 E-value=0.0081 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
.-+.|+||+|+||||++ +.++...
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHH
Confidence 35789999999999999 9888753
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.11 E-value=0.0028 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 8 ki~v~G~~~~GKssl~-~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLT-TCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHGG
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 4789999999999999 777664
No 400
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.10 E-value=0.0024 Score=49.88 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.|.
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHhh
Confidence 5789999999999999 998874
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.10 E-value=0.0025 Score=49.48 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 6 ki~v~G~~~~GKSsli-~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALT-IQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 4789999999999999 777653
No 402
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.09 E-value=0.0028 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.|.|.
T Consensus 23 ~I~lvG~~g~GKSSli-n~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATG-NSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHH-HHHHTS
T ss_pred EEEEECCCCCcHHHHH-HHHhCC
Confidence 6899999999999999 988875
No 403
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.09 E-value=0.0025 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV-LRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 77765
No 404
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.09 E-value=0.0027 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi-~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLA-GTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHTCCE
T ss_pred EEEEECCCCCCHHHHH-HHHHhc
Confidence 6899999999999999 888763
No 405
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.08 E-value=0.0025 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 9 ki~v~G~~~~GKSsli-~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIV-LRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5899999999999999 777664
No 406
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.07 E-value=0.0026 Score=48.54 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=19.3
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.=.++++|+.|+|||||+ +.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~-~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTIL-YRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHH
T ss_pred ccEEEEECCCCCCHHHHH-HHHhc
Confidence 346899999999999999 77754
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.07 E-value=0.0025 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLL-SRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 5899999999999999 877664
No 408
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.06 E-value=0.0026 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=19.4
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+|.++.|.|+.||||||++ +.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~-~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL-QWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHH-HHHHH
T ss_pred cCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 57999999999999999999 87764
No 409
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.06 E-value=0.0036 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|.+++|.|+.||||||++ +.|..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~-~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFV-KLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 3678999999999999999 88864
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.06 E-value=0.003 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|.||+|||||||. +.|+.
T Consensus 8 ~lI~I~GptgSGKTtla-~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS-IEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCcCcHHHHH-HHHHH
Confidence 48999999999999998 66654
No 411
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.04 E-value=0.0027 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 13 ki~v~G~~~~GKSsli-~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVL-YQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5799999999999999 777653
No 412
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.01 E-value=0.0029 Score=47.99 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 026304 34 HVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 34 ~~iiGpNGsGKSTLLl~~i~g 54 (240)
++++|+.|+|||||+ +.+.+
T Consensus 3 i~~~G~~~~GKssl~-~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTIL-YKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHc
Confidence 789999999999999 77755
No 413
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.01 E-value=0.0028 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 16 ~i~v~G~~~~GKssli-~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI-TRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5899999999999999 77764
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.00 E-value=0.0029 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli-~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLL-HQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 5889999999999999 777653
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.00 E-value=0.0034 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|.++.|.|++||||||++ +.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~-~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI-QVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 6889999999999999999 87765
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.99 E-value=0.0036 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=20.6
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++.=.++++|+.|+|||||+ +.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~-~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL-KKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH-HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHH-HHHhc
Confidence 34457899999999999999 87765
No 417
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.99 E-value=0.0044 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHH
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRI 52 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i 52 (240)
.|.-+.|.|++|+|||||.+.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 58889999999999999983444
No 418
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.99 E-value=0.0029 Score=48.88 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 20 ki~v~G~~~~GKSsli-~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALT-LQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhh
Confidence 5899999999999999 77765
No 419
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.97 E-value=0.0036 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|++|+|||||+ +.+.|.
T Consensus 9 ~V~ivG~~nvGKSTLl-n~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLL-NNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHH-HHHHTS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6999999999999999 888775
No 420
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.97 E-value=0.0031 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 22 ki~ivG~~~vGKSsL~-~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALV-HRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5889999999999999 65544
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0031 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 12 ~i~v~G~~~~GKssli-~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLL-VRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 5789999999999999 777653
No 422
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.94 E-value=0.0032 Score=49.23 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 23 ki~vvG~~~~GKSsli-~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALT-IQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 5889999999999999 777653
No 423
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.94 E-value=0.0039 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.252 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+|.++.+-|+.||||||++ +.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~-~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR-NVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4889999999999999999 77765
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.94 E-value=0.0031 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 14 ~i~~~G~~g~GKTsl~-~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLL-TLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5889999999999999 777664
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.94 E-value=0.0047 Score=50.90 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=22.3
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+|.++.+.|+.||||||+. +.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~-~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQS-HLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46899999999999999999 87765
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.0033 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 14 ki~v~G~~~~GKSsli-~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLV-LRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 5899999999999999 777653
No 427
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.93 E-value=0.0037 Score=52.66 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLi-n~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLI-NSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHH-HHHSSS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 4889999999999999 988764
No 428
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.93 E-value=0.0031 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 12 ki~v~G~~~~GKSsli-~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLL-HQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 5899999999999999 777653
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.92 E-value=0.0033 Score=49.67 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 16 ki~v~G~~~~GKSsli-~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALT-LQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5899999999999999 77765
No 430
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.91 E-value=0.003 Score=52.76 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.9
Q ss_pred ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 28 RNSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
..++.+++|.|+.||||||+. +.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~-~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFV-NILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHH-TTTGG
T ss_pred ccCceEEEEECCCCCCHHHHH-HHHHH
Confidence 357889999999999999999 87765
No 431
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.91 E-value=0.0041 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi-~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLM-ERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHCC-
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 4899999999999999 888764
No 432
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.91 E-value=0.0047 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.9
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
+.+++|+||+|||||||. ..|+
T Consensus 3 ~~~i~i~GptgsGKt~la-~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS-VMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHH
T ss_pred CcEEEEECCCcCCHHHHH-HHHH
Confidence 568999999999999999 6554
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.90 E-value=0.0034 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLM-NQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 5899999999999999 777654
No 434
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.90 E-value=0.0036 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
=.++++|+.|+|||||+ +.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli-~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTII-NKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHH-HHTSCGG
T ss_pred cEEEEECCCCCCHHHHH-HHHhcCC
Confidence 36899999999999999 8887754
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.89 E-value=0.0033 Score=49.06 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 9 ki~v~G~~~vGKSsli-~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALL-HVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5789999999999999 777653
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.89 E-value=0.0042 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|+.|+|||||+ +.+.|.
T Consensus 23 ~~I~lvG~~g~GKStl~-n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAG-NSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHH-HHHHTS
T ss_pred eEEEEECCCCCCHHHHH-HHHhCC
Confidence 36899999999999999 888764
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.88 E-value=0.0041 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcC
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+++|+||+|||||||. +.|+.
T Consensus 6 ~~i~i~GptGsGKTtla-~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA-MALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHH-HHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHH
Confidence 58999999999999998 77764
No 438
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.87 E-value=0.0042 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-+++|+|+.|+|||||+ +.+.|.
T Consensus 11 g~v~ivG~~nvGKSTLi-n~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLL-NNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred CEEEEECCCCCcHHHHH-HHHhCC
Confidence 38999999999999999 888875
No 439
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.87 E-value=0.0034 Score=50.60 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+-+++|+|++||||||+. +.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~-~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA-KRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 357899999999999999 88864
No 440
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0038 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
--.++|+|+.|+|||||+ +.+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~-~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLI-ERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHH
T ss_pred ceEEEEEcCCCCCHHHHH-HHHHHH
Confidence 358999999999999999 666653
No 441
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.85 E-value=0.0036 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~vvG~~~~GKSsli-~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLV-LRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHc
Confidence 6899999999999999 77765
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.83 E-value=0.0046 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.1
Q ss_pred cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 29 NSGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.+|.++.+-|+.||||||++ +.|..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~-~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQC-NILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46899999999999999999 87764
No 443
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.82 E-value=0.0035 Score=55.57 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCc
Q 026304 34 HVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 34 ~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++|+|++|+|||||+ +.+.+.
T Consensus 4 v~IVG~pnvGKSTL~-n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLF-NALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHhCC
Confidence 789999999999999 998875
No 444
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.82 E-value=0.0038 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 24 ki~vvG~~~~GKSsli-~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFL-FRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 5899999999999999 777654
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0038 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 25 ki~vvG~~~~GKSsli-~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIV-CRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 5899999999999999 777653
No 446
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.81 E-value=0.0049 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|+.|+|||||+ +.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~-~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTII-NQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHH-HHHSCC
T ss_pred cEEEEECCCCCCHHHHH-HHHhcC
Confidence 46899999999999999 887764
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.81 E-value=0.0039 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 18 ki~v~G~~~~GKSsli-~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLL-LRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 5899999999999999 777653
No 448
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.81 E-value=0.0046 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFL-FRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHH-HHHHTC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5799999999999999 877664
No 449
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.81 E-value=0.0046 Score=51.79 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~-n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLF-NALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5799999999999999 988875
No 450
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.81 E-value=0.0039 Score=48.20 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 7 ~i~~~G~~~~GKssl~-~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLL-ISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5799999999999999 77764
No 451
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.80 E-value=0.0039 Score=48.28 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 20 ki~v~G~~~~GKSsl~-~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALT-IQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5789999999999999 77664
No 452
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.79 E-value=0.0046 Score=49.11 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLL-HQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHH-HHHHC-
T ss_pred EEEEECcCCCCHHHHH-HHHHhC
Confidence 5899999999999999 877654
No 453
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.79 E-value=0.0029 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.279 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-.++|+|+.|+|||||+ +.+.+-
T Consensus 30 ~~i~v~G~~~~GKSsli-n~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAI-NVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHH-HHHTTC
T ss_pred CEEEEEcCCCCCHHHHH-HHHhCC
Confidence 37899999999999999 888774
No 454
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.77 E-value=0.0086 Score=54.29 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.1
Q ss_pred hccCcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecCh
Q 026304 106 YAKLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDG 145 (240)
Q Consensus 106 ~~~p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~ 145 (240)
..+.+++++||.+-. ...+..|.++.. .+..+++++-+-
T Consensus 126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~-~~~~~~~vGD~~ 165 (459)
T 3upu_A 126 LAKCRVLICDEVSMYDRKLFKILLSTIP-PWCTIIGIGDNK 165 (459)
T ss_dssp CSSCSEEEESCGGGCCHHHHHHHHHHSC-TTCEEEEEECTT
T ss_pred ccCCCEEEEECchhCCHHHHHHHHHhcc-CCCEEEEECCHH
Confidence 346799999999653 245555556554 567788887543
No 455
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0047 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.=.++++|+.|+|||||+ +.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~-~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTIL-YQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHH-HHHHT
T ss_pred ccEEEEECCCCCCHHHHH-HHHhc
Confidence 347899999999999999 77764
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.74 E-value=0.0042 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 8 ki~~~G~~~~GKSsli-~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLT-IQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 5789999999999999 76653
No 457
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.73 E-value=0.0044 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 22 ki~v~G~~~~GKSsli-~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLT-YRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5899999999999999 77765
No 458
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.73 E-value=0.004 Score=54.03 Aligned_cols=31 Identities=19% Similarity=0.000 Sum_probs=24.7
Q ss_pred ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304 21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
+++..+.+ .|.-++|+|++|+||||+. ..+.
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a-~~l~ 165 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETA-LELI 165 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHH-HHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHH-HHHH
Confidence 55655666 6899999999999999998 4443
No 459
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.72 E-value=0.0053 Score=49.85 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.-.++|+|+.|+|||||+ +.+.+-
T Consensus 29 ~~kI~vvG~~~vGKSsLi-n~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFM-NIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHH-HHHTTT
T ss_pred CCEEEEECCCCCCHHHHH-HHHhCC
Confidence 347899999999999999 888764
No 460
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.72 E-value=0.0042 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=20.5
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.=.++|+|+.|+|||||+ +.+.+-
T Consensus 23 ~~~ki~vvG~~~~GKSsli-~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLA-HQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHH-HHHHHS
T ss_pred CcEEEEEECCCCcCHHHHH-HHHHhC
Confidence 3446899999999999999 777664
No 461
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.70 E-value=0.0045 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 23 ki~v~G~~~~GKSsli-~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLL-LQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 5889999999999999 777653
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0044 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
.++|+|+.|+|||||+ +.+.+-.+
T Consensus 25 ki~v~G~~~~GKSsli-~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFL-FRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHTT
T ss_pred EEEEECCCCcCHHHHH-HHHhcCCC
Confidence 5799999999999999 87776443
No 463
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.70 E-value=0.0044 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
=.++++|+.|+|||||+ +.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli-~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTIL-YQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHH-HHHHTT
T ss_pred eEEEEECCCCCCHHHHH-HHHhcC
Confidence 36899999999999999 777664
No 464
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.69 E-value=0.0044 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLL-LRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5799999999999999 777653
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0044 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 28 ki~lvG~~~vGKSsLi-~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLV-RRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 5899999999999999 76654
No 466
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.68 E-value=0.0047 Score=47.62 Aligned_cols=21 Identities=33% Similarity=0.232 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 10 ki~v~G~~~~GKssl~-~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLL-ISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5889999999999999 76654
No 467
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.67 E-value=0.0055 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++++|+.|+|||||+ +.+.+
T Consensus 22 ki~~vG~~~vGKTsLi-~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQ-KVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHH-HHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5899999999999999 87776
No 468
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.64 E-value=0.0072 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.0
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIR 53 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~ 53 (240)
..+++|+||+|||||||. ..++
T Consensus 10 ~~~i~i~GptgsGKt~la-~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALA-IELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHH
T ss_pred CcEEEEECCCccCHHHHH-HHHH
Confidence 568999999999999999 6664
No 469
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.64 E-value=0.0058 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
.++|+|+.|||||||+ +.|.|..+
T Consensus 26 ~I~vvG~~~~GKSTll-n~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVL-ENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHH-HHHHTSCC
T ss_pred eEEEEcCCCCCHHHHH-HHHHCCCc
Confidence 6999999999999999 99988643
No 470
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.62 E-value=0.006 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.3
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.=.++|+|+.|+|||||+ +.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi-~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTIL-YKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHH-HHHCS
T ss_pred CccEEEEECCCCCCHHHHH-HHHHh
Confidence 4457999999999999999 87765
No 471
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.62 E-value=0.006 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
.++|+|+.|+|||||+ +.+.+-.+
T Consensus 27 ki~vvG~~~~GKSsLi-~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFL-YRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHH-HHHHCSCC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCCC
Confidence 5899999999999999 88776443
No 472
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.62 E-value=0.0064 Score=50.95 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.|.
T Consensus 7 kI~lvG~~nvGKTsL~-n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLF-NALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5899999999999999 888874
No 473
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.62 E-value=0.006 Score=48.11 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=19.6
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.=.++++|+.|+|||||+ +.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~-~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLV-VSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHC-
T ss_pred ceEEEEECCCCCCHHHHH-HHHHhC
Confidence 346899999999999999 777653
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.0051 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
=.++|+|+.|+|||||+ +.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli-~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALV-VRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHS
T ss_pred eEEEEECCCCCCHHHHH-HHHHhC
Confidence 46899999999999999 777653
No 475
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.62 E-value=0.0051 Score=48.33 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~-~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLL-LAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 6899999999999999 777653
No 476
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.62 E-value=0.0051 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
=.++|+|+.|+|||||+ +.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli-~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFV-NVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHS
T ss_pred cEEEEECCCCCCHHHHH-HHHHcC
Confidence 35899999999999999 777653
No 477
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.62 E-value=0.0063 Score=49.43 Aligned_cols=21 Identities=43% Similarity=0.600 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
++.|+||.||||+|.. +.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa-~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA-KRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999998 77764
No 478
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.61 E-value=0.0051 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
-=.++|+|+.|+|||||+ +.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli-~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFL-MRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHH-HHHHHC
T ss_pred CeEEEEECcCCCCHHHHH-HHHHhC
Confidence 346899999999999999 777653
No 479
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.61 E-value=0.027 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSES 56 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl~ 56 (240)
-.+.+.||.|+|||++. +.++...
T Consensus 489 ~~~ll~G~~GtGKT~la-~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT-VQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred eEEEEECCCCCcHHHHH-HHHHHHh
Confidence 36899999999999999 9887643
No 480
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0052 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 17 ~i~v~G~~~~GKssli-~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLL-LRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHcC
Confidence 6899999999999999 777653
No 481
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.60 E-value=0.0051 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
|-.++|+|.+|+|||||+ +.+.+-
T Consensus 2 ~~kI~IVG~pnvGKSTL~-n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLF-NALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHHT
T ss_pred CCEEEEECCCCCCHHHHH-HHHHCC
Confidence 346899999999999999 988873
No 482
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.59 E-value=0.0056 Score=55.95 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=25.0
Q ss_pred CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
+.+-+|+..+|+||+|+|||||+ +.|.+.
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~-~~l~~~ 174 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLI-QELIHN 174 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHH-HHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHH-HHHHhh
Confidence 56778999999999999999999 777553
No 483
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.59 E-value=0.0061 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 36 ki~vvG~~~vGKSsli-~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLL-MVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHH-HHHHC-
T ss_pred EEEEECcCCCCHHHHH-HHHHcC
Confidence 6889999999999999 777653
No 484
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.59 E-value=0.0064 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|..|+|||||+ +.+.|.
T Consensus 5 ~I~lvG~~n~GKSTLi-n~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLF-NQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 5899999999999999 988874
No 485
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.57 E-value=0.0053 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.=.++|+|+.|+|||||+ +.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli-~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLL-VRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHC
T ss_pred ceEEEEECCCCCCHHHHH-HHHHhC
Confidence 346899999999999999 777653
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.006 Score=48.61 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=22.5
Q ss_pred CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
++.|.-..--.++++|+.|+|||||+ +.+.+-
T Consensus 17 ~~~~~~~~~~ki~vvG~~~~GKSsli-~~l~~~ 48 (207)
T 2fv8_A 17 NLYFQSMIRKKLVVVGDGACGKTCLL-IVFSKD 48 (207)
T ss_dssp --CGGGSEEEEEEEEECTTSSHHHHH-HHHHHS
T ss_pred ccccccccCcEEEEECcCCCCHHHHH-HHHhcC
Confidence 33344333347899999999999999 777653
No 487
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.54 E-value=0.0042 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 10 ki~v~G~~~~GKssl~-~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVL-FRFSED 31 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5899999999999999 777653
No 488
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.54 E-value=0.0054 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi-~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALL-HVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6899999999999999 777664
No 489
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.53 E-value=0.0042 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 9 ki~~vG~~~vGKTsli-~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLI-HRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5899999999999999 766653
No 490
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.50 E-value=0.0093 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 31 GEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 31 Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
--.++|+|+.|+|||||+ +.+.+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~-~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLI-EKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH-HHHHHH
Confidence 357899999999999999 555543
No 491
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.50 E-value=0.006 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 23 ki~vvG~~~vGKTsLi-~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALT-VKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHh
Confidence 5899999999999999 66654
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.50 E-value=0.0018 Score=53.97 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
..+..+.| +.|.||+|+|||||+ +.++..
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la-~~la~~ 67 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLA-KAVAGE 67 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHH-HHHHHH
T ss_pred CCCCCCce--EEEECCCCCcHHHHH-HHHHHH
Confidence 34455555 789999999999999 998763
No 493
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.46 E-value=0.0061 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.+
T Consensus 9 ki~vvG~~~~GKTsli-~~l~~ 29 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLF-VRLLT 29 (214)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 5789999999999999 76655
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.39 E-value=0.0065 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 27 ki~vvG~~~~GKSsli-~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLL-IVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHhC
Confidence 5889999999999999 777653
No 495
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.36 E-value=0.0063 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304 30 SGEIHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 30 ~Ge~~~iiGpNGsGKSTLLl~~i~g 54 (240)
+.=.++++|+.|+|||||+ +.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli-~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSIL-YRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred CceEEEEECCCCCCHHHHH-HHHHc
Confidence 4457999999999999999 87754
No 496
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.007 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++++|+.|+|||||+ +.+.+-
T Consensus 20 ki~v~G~~~~GKssli-~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLL-MSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 6899999999999999 777653
No 497
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.35 E-value=0.0072 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSESD 57 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl~~ 57 (240)
.++|+|..|+|||||+ +.+.|..+
T Consensus 28 ~i~vvG~~~~GKSSLl-n~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVL-ENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHH-HHHHTSCC
T ss_pred eEEEEeCCCCCHHHHH-HHHHCCCc
Confidence 7999999999999999 98887543
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.34 E-value=0.0088 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304 32 EIHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 32 e~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
=.++++|+.|+|||||+ +.+.|-
T Consensus 37 ~~I~lvG~~g~GKSSLi-n~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTV-NSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHH-HHHHTS
T ss_pred cEEEEECCCCCCHHHHH-HHHhCC
Confidence 36899999999999999 888774
No 499
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0093 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 026304 33 IHVIMGPMFAGKTTALLRRIRS 54 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~g 54 (240)
.++|+|+.|+|||||+ +.+.|
T Consensus 39 kVvlvG~~~vGKSSLl-~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLA-NIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHH-HHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5899999999999999 77765
No 500
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.27 E-value=0.0043 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCc
Q 026304 33 IHVIMGPMFAGKTTALLRRIRSE 55 (240)
Q Consensus 33 ~~~iiGpNGsGKSTLLl~~i~gl 55 (240)
.++|+|+.|+|||||+ +.+.+-
T Consensus 13 ki~vvG~~~~GKSsli-~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYI-NRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHH-CBCTTC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5789999999999999 777653
Done!