Query 026306
Match_columns 240
No_of_seqs 55 out of 57
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 06:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0907 Thioredoxin [Posttrans 99.8 6.3E-21 1.4E-25 148.2 7.3 85 34-119 2-92 (106)
2 cd02986 DLP Dim1 family, Dim1- 99.8 4.5E-19 9.8E-24 141.8 7.4 80 38-118 1-84 (114)
3 cd02954 DIM1 Dim1 family; Dim1 99.7 5.5E-18 1.2E-22 134.4 8.6 86 38-123 1-89 (114)
4 KOG0908 Thioredoxin-like prote 99.7 7.3E-18 1.6E-22 152.6 8.1 91 32-125 2-96 (288)
5 cd02985 TRX_CDSP32 TRX family, 99.7 1.2E-17 2.7E-22 123.9 6.4 80 37-117 1-86 (103)
6 PTZ00051 thioredoxin; Provisio 99.7 2.7E-17 5.9E-22 117.4 7.6 88 33-121 2-90 (98)
7 PHA02278 thioredoxin-like prot 99.7 2.4E-17 5.3E-22 126.1 7.9 86 37-122 2-92 (103)
8 cd02989 Phd_like_TxnDC9 Phosdu 99.7 4.4E-17 9.5E-22 124.6 9.2 87 29-116 2-89 (113)
9 KOG0910 Thioredoxin-like prote 99.7 2.7E-17 5.9E-22 137.6 7.5 94 31-124 42-137 (150)
10 cd02987 Phd_like_Phd Phosducin 99.7 1.3E-16 2.8E-21 131.6 10.8 114 26-153 57-175 (175)
11 cd02957 Phd_like Phosducin (Ph 99.7 7.1E-17 1.5E-21 121.3 7.8 87 30-119 3-94 (113)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 2.5E-16 5.5E-21 114.3 9.0 82 32-114 2-84 (101)
13 cd02984 TRX_PICOT TRX domain, 99.7 1.2E-16 2.6E-21 113.6 6.3 89 38-126 1-92 (97)
14 PLN00410 U5 snRNP protein, DIM 99.7 1.8E-16 4E-21 130.0 7.4 82 32-113 4-89 (142)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 5.5E-16 1.2E-20 112.4 8.4 81 31-112 1-83 (104)
16 PF00085 Thioredoxin: Thioredo 99.6 7.4E-16 1.6E-20 108.4 8.6 100 35-152 2-103 (103)
17 cd03006 PDI_a_EFP1_N PDIa fami 99.6 1.3E-15 2.9E-20 118.4 9.1 85 28-113 6-95 (113)
18 cd03065 PDI_b_Calsequestrin_N 99.6 3E-15 6.5E-20 118.6 10.2 95 24-119 2-104 (120)
19 PRK10996 thioredoxin 2; Provis 99.6 3.3E-15 7.2E-20 117.5 8.7 102 12-117 19-121 (139)
20 cd02996 PDI_a_ERp44 PDIa famil 99.6 4.4E-15 9.6E-20 109.2 8.3 82 31-113 1-89 (108)
21 cd02948 TRX_NDPK TRX domain, T 99.6 5.1E-15 1.1E-19 109.5 8.1 84 35-120 3-89 (102)
22 cd02952 TRP14_like Human TRX-r 99.6 1.1E-14 2.4E-19 115.6 7.7 86 35-126 5-108 (119)
23 cd02956 ybbN ybbN protein fami 99.5 1.7E-14 3.7E-19 102.9 7.3 76 41-116 2-80 (96)
24 cd02997 PDI_a_PDIR PDIa family 99.5 2.9E-14 6.4E-19 101.4 8.4 81 33-114 2-87 (104)
25 cd02962 TMX2 TMX2 family; comp 99.5 2.5E-14 5.5E-19 117.1 8.8 91 25-116 22-122 (152)
26 cd03002 PDI_a_MPD1_like PDI fa 99.5 3.5E-14 7.6E-19 102.7 8.1 80 33-113 2-85 (109)
27 cd02994 PDI_a_TMX PDIa family, 99.5 4.3E-14 9.3E-19 102.0 8.3 80 31-113 1-82 (101)
28 cd02963 TRX_DnaJ TRX domain, D 99.5 3.4E-14 7.5E-19 107.0 7.5 80 38-117 10-94 (111)
29 cd02999 PDI_a_ERp44_like PDIa 99.5 2.3E-14 5E-19 107.0 5.7 65 48-113 17-83 (100)
30 cd02988 Phd_like_VIAF Phosduci 99.5 3.7E-14 8E-19 119.2 7.4 83 29-117 80-167 (192)
31 PRK09381 trxA thioredoxin; Pro 99.5 1.3E-13 2.7E-18 101.1 8.3 82 32-114 4-87 (109)
32 cd02998 PDI_a_ERp38 PDIa famil 99.5 3.6E-13 7.7E-18 95.3 8.7 79 33-112 2-85 (105)
33 cd03005 PDI_a_ERp46 PDIa famil 99.4 4.3E-13 9.2E-18 95.5 8.0 80 33-114 2-85 (102)
34 cd02953 DsbDgamma DsbD gamma f 99.4 2.5E-13 5.5E-18 99.1 7.0 72 39-110 1-80 (104)
35 cd02993 PDI_a_APS_reductase PD 99.4 4.3E-13 9.2E-18 100.0 7.9 79 32-111 2-87 (109)
36 TIGR01126 pdi_dom protein disu 99.4 5.6E-13 1.2E-17 93.9 7.5 76 38-113 2-80 (102)
37 cd03001 PDI_a_P5 PDIa family, 99.4 4.8E-13 1E-17 95.4 6.9 79 33-112 2-82 (103)
38 cd02995 PDI_a_PDI_a'_C PDIa fa 99.4 1.3E-12 2.8E-17 92.7 8.1 79 33-113 2-84 (104)
39 cd02965 HyaE HyaE family; HyaE 99.4 7.3E-13 1.6E-17 105.2 7.4 84 38-121 16-102 (111)
40 cd02975 PfPDO_like_N Pyrococcu 99.4 8E-13 1.7E-17 100.9 6.8 70 42-112 15-85 (113)
41 cd03000 PDI_a_TMX3 PDIa family 99.4 1.2E-12 2.6E-17 96.1 7.3 73 38-111 5-81 (104)
42 cd02950 TxlA TRX-like protein 99.4 9.2E-13 2E-17 104.5 7.1 76 38-113 9-88 (142)
43 TIGR01068 thioredoxin thioredo 99.4 2.2E-12 4.8E-17 90.1 8.2 76 38-113 2-79 (101)
44 cd02992 PDI_a_QSOX PDIa family 99.4 2.1E-12 4.6E-17 98.5 8.0 92 33-125 3-101 (114)
45 cd02961 PDI_a_family Protein D 99.4 3.1E-12 6.8E-17 87.7 8.0 75 38-112 4-81 (101)
46 cd02947 TRX_family TRX family; 99.3 5.2E-12 1.1E-16 84.5 7.2 73 40-113 1-74 (93)
47 PTZ00443 Thioredoxin domain-co 99.3 9.6E-12 2.1E-16 107.7 8.8 82 30-112 29-116 (224)
48 cd02949 TRX_NTR TRX domain, no 99.3 1.1E-11 2.5E-16 90.1 7.4 71 43-113 6-78 (97)
49 PTZ00062 glutaredoxin; Provisi 99.3 8.4E-12 1.8E-16 107.1 7.3 71 35-114 2-74 (204)
50 TIGR01130 ER_PDI_fam protein d 99.2 8.9E-11 1.9E-15 102.5 11.2 81 33-114 3-87 (462)
51 TIGR00424 APS_reduc 5'-adenyly 99.2 3.8E-11 8.2E-16 114.1 9.0 91 22-113 341-439 (463)
52 PTZ00102 disulphide isomerase; 99.2 1.2E-10 2.6E-15 103.8 10.3 82 30-112 356-441 (477)
53 PLN02309 5'-adenylylsulfate re 99.2 9.6E-11 2.1E-15 111.1 10.2 108 26-151 339-455 (457)
54 PTZ00102 disulphide isomerase; 99.2 1.1E-10 2.5E-15 103.9 9.6 103 30-152 31-137 (477)
55 cd02959 ERp19 Endoplasmic reti 99.2 8.5E-11 1.8E-15 90.9 6.7 76 41-116 7-91 (117)
56 TIGR01295 PedC_BrcD bacterioci 99.1 1.2E-10 2.7E-15 91.0 7.3 79 38-118 12-106 (122)
57 cd02982 PDI_b'_family Protein 99.1 2E-10 4.4E-15 82.3 6.3 66 47-112 10-78 (103)
58 TIGR01130 ER_PDI_fam protein d 99.1 7.2E-10 1.6E-14 96.8 9.8 105 30-153 345-454 (462)
59 cd02951 SoxW SoxW family; SoxW 99.1 3.5E-10 7.6E-15 85.2 6.6 74 38-111 2-93 (125)
60 COG3118 Thioredoxin domain-con 99.0 1.1E-09 2.5E-14 100.5 7.6 103 33-155 25-132 (304)
61 TIGR00411 redox_disulf_1 small 99.0 1.1E-09 2.5E-14 75.6 5.4 57 52-108 2-59 (82)
62 cd02955 SSP411 TRX domain, SSP 99.0 3E-09 6.6E-14 84.6 8.5 102 38-151 4-117 (124)
63 cd02973 TRX_GRX_like Thioredox 98.9 2.8E-09 6.2E-14 72.5 5.4 55 53-108 3-58 (67)
64 PRK00293 dipZ thiol:disulfide 98.9 5.6E-09 1.2E-13 100.1 8.5 79 31-110 452-542 (571)
65 TIGR02187 GlrX_arch Glutaredox 98.8 9.2E-09 2E-13 85.7 7.6 64 49-113 132-197 (215)
66 PHA02125 thioredoxin-like prot 98.8 4.1E-09 8.9E-14 75.0 4.1 50 52-107 1-51 (75)
67 TIGR02187 GlrX_arch Glutaredox 98.8 1.1E-08 2.3E-13 85.3 6.2 67 46-114 17-89 (215)
68 cd03007 PDI_a_ERp29_N PDIa fam 98.8 4.6E-08 1E-12 78.2 9.4 99 38-153 7-116 (116)
69 PF02114 Phosducin: Phosducin; 98.7 1.1E-07 2.4E-12 84.6 10.4 110 31-154 125-239 (265)
70 COG0526 TrxA Thiol-disulfide i 98.7 5E-08 1.1E-12 64.8 6.2 66 49-114 32-101 (127)
71 PF13905 Thioredoxin_8: Thiore 98.7 1.3E-08 2.7E-13 72.6 2.3 81 49-137 1-86 (95)
72 cd02967 mauD Methylamine utili 98.6 2.5E-08 5.4E-13 72.7 3.8 59 48-106 20-82 (114)
73 KOG0912 Thiol-disulfide isomer 98.6 5.6E-08 1.2E-12 91.2 6.6 103 40-160 4-113 (375)
74 cd03010 TlpA_like_DsbE TlpA-li 98.6 6.2E-08 1.3E-12 72.5 4.1 63 48-112 24-88 (127)
75 TIGR00412 redox_disulf_2 small 98.6 1.1E-07 2.4E-12 68.4 5.1 58 53-115 2-60 (76)
76 TIGR02740 TraF-like TraF-like 98.5 2.1E-07 4.6E-12 82.1 7.4 61 49-111 166-238 (271)
77 cd03008 TryX_like_RdCVF Trypar 98.5 8.7E-08 1.9E-12 78.6 4.1 103 48-160 24-145 (146)
78 KOG1672 ATP binding protein [P 98.5 3.4E-07 7.3E-12 81.1 7.9 86 27-113 62-148 (211)
79 cd02964 TryX_like_family Trypa 98.5 2E-07 4.3E-12 71.3 5.4 45 48-92 16-64 (132)
80 cd03009 TryX_like_TryX_NRX Try 98.5 2.6E-07 5.5E-12 69.8 5.6 44 48-91 17-64 (131)
81 KOG0191 Thioredoxin/protein di 98.4 3.4E-07 7.4E-12 82.3 6.1 139 18-187 14-157 (383)
82 TIGR00385 dsbE periplasmic pro 98.4 5.5E-07 1.2E-11 72.5 5.3 66 46-114 60-127 (173)
83 PF13899 Thioredoxin_7: Thiore 98.4 4.5E-07 9.8E-12 65.0 3.9 65 43-109 11-80 (82)
84 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 1.2E-06 2.6E-11 65.7 5.4 65 49-116 11-77 (89)
85 PRK15412 thiol:disulfide inter 98.2 1.3E-06 2.8E-11 71.4 4.1 44 47-93 66-110 (185)
86 cd02966 TlpA_like_family TlpA- 98.1 8.4E-06 1.8E-10 56.3 6.3 47 49-95 19-68 (116)
87 KOG0190 Protein disulfide isom 98.1 4.3E-06 9.4E-11 81.1 6.4 83 30-114 24-111 (493)
88 PRK14018 trifunctional thiored 98.1 1.7E-06 3.7E-11 83.9 3.5 43 47-89 54-98 (521)
89 TIGR02738 TrbB type-F conjugat 98.1 3.1E-06 6.7E-11 69.5 4.2 42 48-91 49-91 (153)
90 PLN02919 haloacid dehalogenase 98.1 1.4E-05 3E-10 82.2 9.3 84 3-87 374-460 (1057)
91 cd01659 TRX_superfamily Thiore 98.0 1.9E-05 4.1E-10 47.3 5.3 59 53-112 1-63 (69)
92 KOG0190 Protein disulfide isom 98.0 2.1E-05 4.5E-10 76.5 7.6 90 19-113 352-449 (493)
93 cd03011 TlpA_like_ScsD_MtbDsbE 97.9 2.8E-05 6.1E-10 57.4 6.4 39 47-87 18-57 (123)
94 PRK03147 thiol-disulfide oxido 97.9 2.4E-05 5.2E-10 60.9 6.2 45 48-92 60-106 (173)
95 PF08534 Redoxin: Redoxin; In 97.9 8.6E-06 1.9E-10 62.2 3.4 46 48-93 27-75 (146)
96 PF13098 Thioredoxin_2: Thiore 97.9 8.8E-06 1.9E-10 59.4 2.8 63 48-110 4-90 (112)
97 cd03012 TlpA_like_DipZ_like Tl 97.8 2.6E-05 5.6E-10 59.1 4.5 42 48-89 22-65 (126)
98 TIGR02196 GlrX_YruB Glutaredox 97.8 3.4E-05 7.4E-10 51.0 4.5 51 53-109 2-57 (74)
99 cd02958 UAS UAS family; UAS is 97.8 0.00011 2.3E-09 55.3 7.1 64 47-110 15-84 (114)
100 cd00340 GSH_Peroxidase Glutath 97.8 3.7E-05 8.1E-10 60.4 4.7 43 48-90 21-64 (152)
101 PRK00522 tpx lipid hydroperoxi 97.6 6.9E-05 1.5E-09 60.6 4.6 61 48-112 43-108 (167)
102 COG4232 Thiol:disulfide interc 97.6 0.00011 2.4E-09 72.8 6.7 81 30-111 452-543 (569)
103 PTZ00056 glutathione peroxidas 97.6 7.4E-05 1.6E-09 62.8 4.2 42 48-89 38-81 (199)
104 TIGR02540 gpx7 putative glutat 97.6 0.00011 2.3E-09 57.8 4.6 42 48-89 21-64 (153)
105 KOG0911 Glutaredoxin-related p 97.5 4.6E-05 1E-09 68.3 2.4 85 32-119 2-88 (227)
106 PLN02399 phospholipid hydroper 97.5 9.9E-05 2.1E-09 65.0 4.3 42 48-89 98-141 (236)
107 TIGR02661 MauD methylamine deh 97.5 0.00011 2.5E-09 60.5 3.7 40 48-89 73-113 (189)
108 cd03014 PRX_Atyp2cys Peroxired 97.5 0.00021 4.6E-09 54.5 4.8 43 48-91 25-69 (143)
109 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00019 4.1E-09 49.7 4.0 52 53-106 1-58 (84)
110 PTZ00256 glutathione peroxidas 97.4 7E-05 1.5E-09 61.3 2.0 42 48-89 39-83 (183)
111 TIGR02200 GlrX_actino Glutared 97.4 0.00018 3.9E-09 48.9 3.7 53 53-112 2-60 (77)
112 PRK11509 hydrogenase-1 operon 97.4 0.0013 2.9E-08 54.1 9.5 106 1-123 1-112 (132)
113 PRK13728 conjugal transfer pro 97.4 0.00015 3.4E-09 62.1 3.9 38 53-92 73-111 (181)
114 cd02968 SCO SCO (an acronym fo 97.3 0.00028 6.1E-09 53.1 4.2 44 48-91 21-70 (142)
115 cd02960 AGR Anterior Gradient 97.3 0.00084 1.8E-08 55.0 7.3 66 41-110 11-87 (130)
116 KOG0914 Thioredoxin-like prote 97.3 0.00054 1.2E-08 62.6 6.3 93 25-117 118-220 (265)
117 KOG0191 Thioredoxin/protein di 97.2 0.00055 1.2E-08 61.9 5.7 75 39-113 151-229 (383)
118 cd02971 PRX_family Peroxiredox 97.2 0.00086 1.9E-08 50.2 5.3 44 48-91 21-67 (140)
119 PF00578 AhpC-TSA: AhpC/TSA fa 97.2 0.0006 1.3E-08 49.9 4.1 45 48-92 24-71 (124)
120 TIGR01626 ytfJ_HI0045 conserve 97.1 0.00089 1.9E-08 57.4 5.3 64 49-115 59-136 (184)
121 PLN02412 probable glutathione 97.1 0.00064 1.4E-08 55.1 4.1 43 48-90 28-72 (167)
122 PRK10606 btuE putative glutath 97.1 0.00085 1.8E-08 56.8 4.8 41 49-90 25-67 (183)
123 smart00594 UAS UAS domain. 97.0 0.0023 5E-08 49.5 6.7 69 40-111 14-95 (122)
124 cd02970 PRX_like2 Peroxiredoxi 97.0 0.0013 2.9E-08 49.3 5.2 65 49-114 23-90 (149)
125 cd02969 PRX_like1 Peroxiredoxi 97.0 0.001 2.2E-08 52.8 4.5 45 47-91 23-69 (171)
126 cd03017 PRX_BCP Peroxiredoxin 96.9 0.0019 4.1E-08 48.5 5.0 43 48-90 22-67 (140)
127 PRK11200 grxA glutaredoxin 1; 96.8 0.0017 3.8E-08 46.8 4.1 40 52-92 2-42 (85)
128 cd03419 GRX_GRXh_1_2_like Glut 96.8 0.0016 3.5E-08 45.2 3.6 55 53-113 2-62 (82)
129 KOG2501 Thioredoxin, nucleored 96.8 0.0012 2.5E-08 56.4 3.1 42 48-89 32-79 (157)
130 cd03018 PRX_AhpE_like Peroxire 96.6 0.0028 6.1E-08 48.2 4.1 43 49-91 27-73 (149)
131 cd03015 PRX_Typ2cys Peroxiredo 96.6 0.003 6.5E-08 50.7 4.4 44 48-91 28-74 (173)
132 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.0046 9.9E-08 40.8 4.4 50 53-108 2-56 (73)
133 cd02066 GRX_family Glutaredoxi 96.4 0.0052 1.1E-07 40.2 4.0 49 53-107 2-55 (72)
134 PF02966 DIM1: Mitosis protein 96.4 0.0089 1.9E-07 50.2 6.3 78 35-113 4-85 (133)
135 PRK09437 bcp thioredoxin-depen 96.4 0.0044 9.6E-08 48.1 4.2 44 48-91 29-75 (154)
136 cd02981 PDI_b_family Protein D 96.3 0.017 3.7E-07 41.3 6.2 74 33-112 1-74 (97)
137 TIGR02189 GlrX-like_plant Glut 96.2 0.011 2.3E-07 45.1 5.1 79 53-166 10-96 (99)
138 KOG3170 Conserved phosducin-li 96.2 0.013 2.8E-07 53.2 6.3 82 31-119 91-179 (240)
139 TIGR03137 AhpC peroxiredoxin. 96.1 0.071 1.5E-06 44.1 9.9 125 48-175 30-173 (187)
140 PF06110 DUF953: Eukaryotic pr 96.1 0.017 3.7E-07 46.8 5.9 77 36-112 2-99 (119)
141 KOG3425 Uncharacterized conser 96.0 0.017 3.6E-07 48.5 5.9 57 37-93 10-78 (128)
142 KOG3171 Conserved phosducin-li 96.0 0.019 4.1E-07 52.8 6.7 83 31-117 138-226 (273)
143 KOG3414 Component of the U4/U6 96.0 0.027 6E-07 48.0 7.1 90 35-124 7-99 (142)
144 PF13848 Thioredoxin_6: Thiore 95.9 0.035 7.5E-07 43.1 6.6 72 41-112 86-161 (184)
145 TIGR02183 GRXA Glutaredoxin, G 95.8 0.01 2.2E-07 43.6 3.3 37 53-90 2-39 (86)
146 cd02983 P5_C P5 family, C-term 95.2 0.12 2.5E-06 41.4 7.7 79 31-111 2-90 (130)
147 KOG4277 Uncharacterized conser 95.2 0.019 4E-07 55.4 3.5 79 41-119 32-117 (468)
148 PF00462 Glutaredoxin: Glutare 95.0 0.014 3.1E-07 39.3 1.7 50 53-108 1-55 (60)
149 PHA03050 glutaredoxin; Provisi 94.8 0.03 6.6E-07 43.7 3.3 93 41-166 4-104 (108)
150 KOG1731 FAD-dependent sulfhydr 94.5 0.02 4.4E-07 57.6 1.9 90 32-122 40-136 (606)
151 cd03023 DsbA_Com1_like DsbA fa 94.3 0.082 1.8E-06 39.5 4.4 40 49-89 5-45 (154)
152 PF03190 Thioredox_DsbH: Prote 94.3 0.044 9.5E-07 46.8 3.3 116 40-172 28-155 (163)
153 TIGR02190 GlrX-dom Glutaredoxi 93.7 0.11 2.3E-06 37.3 3.9 53 50-108 7-63 (79)
154 TIGR02181 GRX_bact Glutaredoxi 93.5 0.085 1.8E-06 37.0 3.1 49 53-107 1-54 (79)
155 PRK10329 glutaredoxin-like pro 93.4 0.17 3.7E-06 37.4 4.7 50 53-108 3-56 (81)
156 PRK10382 alkyl hydroperoxide r 93.2 0.15 3.2E-06 43.2 4.6 65 48-113 30-101 (187)
157 cd03418 GRX_GRXb_1_3_like Glut 92.8 0.24 5.2E-06 34.0 4.4 49 53-107 2-56 (75)
158 PF13728 TraF: F plasmid trans 92.2 0.46 9.9E-06 41.2 6.3 63 49-113 120-194 (215)
159 PRK15000 peroxidase; Provision 92.1 0.25 5.3E-06 41.9 4.5 45 48-92 33-80 (200)
160 cd03072 PDI_b'_ERp44 PDIb' fam 91.7 0.89 1.9E-05 35.3 6.9 67 42-111 9-82 (111)
161 cd03066 PDI_b_Calsequestrin_mi 91.2 1 2.3E-05 33.7 6.6 77 33-115 2-80 (102)
162 cd03029 GRX_hybridPRX5 Glutare 91.0 0.26 5.6E-06 34.2 3.0 52 53-112 3-58 (72)
163 PTZ00253 tryparedoxin peroxida 90.9 0.42 9E-06 39.8 4.6 45 48-92 35-82 (199)
164 PF11009 DUF2847: Protein of u 90.7 0.59 1.3E-05 37.6 5.2 78 34-113 2-89 (105)
165 cd03027 GRX_DEP Glutaredoxin ( 90.6 0.57 1.2E-05 32.7 4.5 48 53-106 3-55 (73)
166 TIGR02194 GlrX_NrdH Glutaredox 90.6 0.39 8.4E-06 33.7 3.6 50 53-108 1-54 (72)
167 cd02991 UAS_ETEA UAS family, E 90.1 0.65 1.4E-05 36.7 4.8 61 47-110 15-84 (116)
168 PRK15317 alkyl hydroperoxide r 90.0 0.94 2E-05 42.8 6.7 59 49-108 115-175 (517)
169 PRK13191 putative peroxiredoxi 89.9 0.44 9.5E-06 41.0 4.1 46 48-93 32-80 (215)
170 PRK13190 putative peroxiredoxi 89.9 0.47 1E-05 40.0 4.2 44 48-91 26-72 (202)
171 PRK10638 glutaredoxin 3; Provi 89.9 0.3 6.4E-06 35.1 2.6 50 53-108 4-58 (83)
172 PF14595 Thioredoxin_9: Thiore 89.5 0.57 1.2E-05 37.7 4.2 61 49-110 41-105 (129)
173 cd03073 PDI_b'_ERp72_ERp57 PDI 89.5 1.4 2.9E-05 34.5 6.2 60 49-110 14-85 (111)
174 cd03016 PRX_1cys Peroxiredoxin 89.5 0.52 1.1E-05 39.6 4.1 44 49-92 24-71 (203)
175 cd03028 GRX_PICOT_like Glutare 89.0 0.64 1.4E-05 34.4 3.8 55 49-112 7-71 (90)
176 PF13192 Thioredoxin_3: Thiore 88.8 1.4 3E-05 31.6 5.4 49 57-108 6-55 (76)
177 PRK13599 putative peroxiredoxi 87.8 0.67 1.5E-05 40.0 3.8 46 48-93 27-75 (215)
178 COG0695 GrxC Glutaredoxin and 87.7 1 2.2E-05 33.3 4.2 50 53-108 3-59 (80)
179 TIGR00365 monothiol glutaredox 87.1 1.1 2.5E-05 33.9 4.3 58 42-106 4-71 (97)
180 PTZ00137 2-Cys peroxiredoxin; 86.9 1.1 2.3E-05 40.6 4.7 116 48-168 97-234 (261)
181 PRK13189 peroxiredoxin; Provis 86.8 0.92 2E-05 39.1 4.1 45 48-92 34-81 (222)
182 KOG1752 Glutaredoxin and relat 86.7 0.67 1.4E-05 36.9 2.9 38 49-93 13-51 (104)
183 TIGR03143 AhpF_homolog putativ 86.4 2.6 5.6E-05 40.5 7.2 59 49-108 475-535 (555)
184 cd02972 DsbA_family DsbA famil 85.7 1.2 2.6E-05 30.1 3.4 41 53-93 1-42 (98)
185 PRK13703 conjugal pilus assemb 84.3 2.8 6.1E-05 37.9 6.0 40 49-90 143-183 (248)
186 TIGR03140 AhpF alkyl hydropero 83.8 4.1 8.9E-05 38.6 7.2 59 49-108 116-176 (515)
187 PF13462 Thioredoxin_4: Thiore 82.3 2.8 6E-05 32.0 4.5 46 49-94 12-60 (162)
188 PRK12759 bifunctional gluaredo 81.8 1.9 4E-05 40.6 4.1 78 53-139 4-106 (410)
189 KOG2603 Oligosaccharyltransfer 81.5 5.4 0.00012 38.2 7.0 85 29-114 38-138 (331)
190 cd03068 PDI_b_ERp72 PDIb famil 81.2 6 0.00013 30.5 6.0 71 33-109 2-73 (107)
191 TIGR02739 TraF type-F conjugat 79.7 6.8 0.00015 35.6 6.8 62 49-112 150-223 (256)
192 PRK10824 glutaredoxin-4; Provi 79.3 3 6.5E-05 33.6 4.0 66 39-113 4-79 (115)
193 PRK10954 periplasmic protein d 77.9 2.8 6.2E-05 35.1 3.6 42 49-90 37-82 (207)
194 cd02974 AhpF_NTD_N Alkyl hydro 77.3 17 0.00037 28.1 7.5 62 39-112 7-70 (94)
195 TIGR03143 AhpF_homolog putativ 75.3 7.1 0.00015 37.6 5.9 78 31-110 346-427 (555)
196 PF00837 T4_deiodinase: Iodoth 74.0 3 6.5E-05 38.0 2.9 64 28-91 79-145 (237)
197 PF05768 DUF836: Glutaredoxin- 73.5 6.3 0.00014 28.7 4.0 53 53-108 2-55 (81)
198 cd03019 DsbA_DsbA DsbA family, 71.4 7.5 0.00016 30.2 4.3 42 48-89 14-56 (178)
199 PF04592 SelP_N: Selenoprotein 69.9 4.2 9E-05 37.3 2.9 98 49-147 26-139 (238)
200 cd03069 PDI_b_ERp57 PDIb famil 69.3 12 0.00026 28.2 4.8 71 33-110 2-72 (104)
201 cd06353 PBP1_BmpA_Med_like Per 68.4 10 0.00022 32.8 4.8 75 2-88 11-89 (258)
202 COG1331 Highly conserved prote 65.3 9 0.00019 39.6 4.5 51 38-90 32-86 (667)
203 cd03020 DsbA_DsbC_DsbG DsbA fa 65.2 9.7 0.00021 31.3 3.9 37 49-89 77-114 (197)
204 TIGR00455 apsK adenylylsulfate 63.7 10 0.00022 30.5 3.8 46 47-99 88-133 (184)
205 cd02027 APSK Adenosine 5'-phos 56.4 24 0.00053 28.0 4.7 59 46-116 68-126 (149)
206 PRK15317 alkyl hydroperoxide r 55.0 45 0.00098 31.7 6.9 61 39-111 7-69 (517)
207 PTZ00062 glutaredoxin; Provisi 54.8 29 0.00063 30.4 5.2 45 42-93 105-155 (204)
208 cd03060 GST_N_Omega_like GST_N 51.1 28 0.00061 23.8 3.7 51 54-108 2-54 (71)
209 PF13848 Thioredoxin_6: Thiore 51.1 78 0.0017 24.5 6.6 42 66-111 8-49 (184)
210 cd03013 PRX5_like Peroxiredoxi 51.1 47 0.001 26.8 5.6 46 48-93 28-78 (155)
211 PRK06762 hypothetical protein; 50.6 28 0.00061 27.2 4.1 48 47-99 66-113 (166)
212 PF01524 Gemini_V1: Geminiviru 50.1 9.6 0.00021 30.0 1.4 23 140-165 11-33 (78)
213 PF02608 Bmp: Basic membrane p 49.4 42 0.00091 29.7 5.5 80 2-92 13-97 (306)
214 PF02630 SCO1-SenC: SCO1/SenC; 47.7 36 0.00077 28.1 4.5 41 48-89 51-97 (174)
215 cd04657 Piwi_ago-like Piwi_ago 45.5 69 0.0015 30.2 6.5 120 29-176 269-410 (426)
216 TIGR01091 upp uracil phosphori 44.9 1.3E+02 0.0027 25.9 7.5 66 19-90 111-184 (207)
217 PLN03202 protein argonaute; Pr 42.8 99 0.0021 32.6 7.7 136 8-175 692-843 (900)
218 TIGR03140 AhpF alkyl hydropero 41.9 1E+02 0.0022 29.4 7.1 47 39-86 7-55 (515)
219 PF01216 Calsequestrin: Calseq 41.3 1.6E+02 0.0034 29.2 8.3 95 23-119 26-129 (383)
220 cd00227 CPT Chloramphenicol (C 41.0 64 0.0014 25.9 4.9 53 41-101 77-130 (175)
221 PF14213 DUF4325: Domain of un 40.4 50 0.0011 23.9 3.8 37 42-79 10-47 (74)
222 PF02310 B12-binding: B12 bind 38.2 75 0.0016 23.5 4.5 48 38-86 39-87 (121)
223 TIGR01313 therm_gnt_kin carboh 37.2 1.2E+02 0.0025 23.7 5.7 42 49-99 70-111 (163)
224 cd02977 ArsC_family Arsenate R 36.0 30 0.00065 25.9 2.1 33 53-91 1-34 (105)
225 PF10751 DUF2535: Protein of u 34.7 21 0.00046 28.5 1.2 13 140-152 52-64 (83)
226 PHA02530 pseT polynucleotide k 33.8 76 0.0017 27.3 4.5 49 46-99 72-120 (300)
227 PRK10877 protein disulfide iso 31.7 73 0.0016 27.8 4.1 38 49-89 107-145 (232)
228 cd03070 PDI_b_ERp44 PDIb famil 31.2 1.2E+02 0.0027 23.8 4.9 51 33-86 1-51 (91)
229 cd00570 GST_N_family Glutathio 31.1 93 0.002 19.3 3.5 50 55-108 3-55 (71)
230 cd03059 GST_N_SspA GST_N famil 30.0 74 0.0016 21.3 3.1 50 54-107 2-53 (73)
231 TIGR01663 PNK-3'Pase polynucle 29.5 91 0.002 31.2 4.8 50 45-99 416-465 (526)
232 PRK14467 ribosomal RNA large s 29.3 5.8 0.00013 37.1 -3.2 78 100-177 254-344 (348)
233 PRK13932 stationary phase surv 28.5 98 0.0021 28.3 4.5 89 62-150 144-251 (257)
234 PF06953 ArsD: Arsenical resis 28.1 38 0.00082 27.9 1.7 54 103-156 1-72 (123)
235 PF13671 AAA_33: AAA domain; P 27.9 1.1E+02 0.0023 22.9 3.9 49 46-99 67-115 (143)
236 cd03051 GST_N_GTT2_like GST_N 26.9 1.1E+02 0.0024 20.1 3.5 50 55-108 3-57 (74)
237 KOG0913 Thiol-disulfide isomer 26.9 41 0.00089 31.3 1.8 183 23-233 15-206 (248)
238 cd03031 GRX_GRX_like Glutaredo 26.9 66 0.0014 26.9 2.9 36 53-94 2-44 (147)
239 PF13529 Peptidase_C39_2: Pept 26.8 78 0.0017 22.9 3.0 26 36-61 86-111 (144)
240 cd09071 FAR_C C-terminal domai 26.4 75 0.0016 23.0 2.8 25 136-161 67-91 (92)
241 PF09363 XFP_C: XFP C-terminal 24.9 66 0.0014 29.0 2.7 22 38-59 88-109 (203)
242 cd01840 SGNH_hydrolase_yrhL_li 24.7 1.6E+02 0.0034 23.1 4.5 46 38-84 65-114 (150)
243 cd03040 GST_N_mPGES2 GST_N fam 24.6 67 0.0015 22.0 2.2 51 53-109 2-54 (77)
244 KOG4163 Prolyl-tRNA synthetase 24.3 57 0.0012 33.2 2.4 31 27-61 461-491 (551)
245 TIGR02836 spore_IV_A stage IV 24.1 1.4E+02 0.003 30.4 5.0 79 37-117 167-251 (492)
246 TIGR01361 DAHP_synth_Bsub phos 23.5 39 0.00085 30.2 1.0 37 139-176 64-100 (260)
247 PRK11194 ribosomal RNA large s 23.3 23 0.00051 33.6 -0.4 72 100-173 264-348 (372)
248 PF11842 DUF3362: Domain of un 23.1 28 0.00061 30.0 0.1 11 16-26 14-24 (150)
249 COG1744 Med Uncharacterized AB 22.8 60 0.0013 30.2 2.1 46 36-88 80-129 (345)
250 PF07881 Fucose_iso_N1: L-fuco 22.5 87 0.0019 27.8 2.9 98 6-110 30-137 (171)
251 cd03074 PDI_b'_Calsequestrin_C 22.4 85 0.0018 26.6 2.7 44 51-94 22-68 (120)
252 COG1489 SfsA DNA-binding prote 22.3 2.1E+02 0.0046 26.4 5.4 56 40-96 158-222 (235)
253 PF01216 Calsequestrin: Calseq 22.0 2.8E+02 0.0061 27.5 6.5 83 30-119 145-231 (383)
254 KOG0715 Molecular chaperone (D 21.8 52 0.0011 30.1 1.5 19 64-82 58-76 (288)
255 PF00255 GSHPx: Glutathione pe 21.8 1.2E+02 0.0025 24.3 3.3 42 49-91 21-64 (108)
256 cd03055 GST_N_Omega GST_N fami 21.4 1.7E+02 0.0038 21.1 3.9 52 53-108 19-72 (89)
257 PLN02541 uracil phosphoribosyl 21.4 5.4E+02 0.012 23.4 7.8 63 20-90 146-221 (244)
258 PF03015 Sterile: Male sterili 21.0 1.1E+02 0.0024 22.7 2.9 27 135-162 66-92 (94)
259 PRK08734 lipid A biosynthesis 20.9 1.9E+02 0.0041 25.9 4.8 45 10-55 74-118 (305)
260 cd02021 GntK Gluconate kinase 20.7 2.2E+02 0.0047 21.8 4.5 45 48-99 71-115 (150)
261 PF07449 HyaE: Hydrogenase-1 e 20.5 2.3E+02 0.0049 22.9 4.7 84 39-123 16-103 (107)
262 PRK11657 dsbG disulfide isomer 20.2 1.5E+02 0.0033 26.2 4.0 37 49-87 117-154 (251)
No 1
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.3e-21 Score=148.15 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred EEecCHHHHHHHhhc----CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 34 IHFTSEREFVHILHQ----GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 34 i~ItSE~qwD~~L~e----GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
..+++.++|+..+.. +++|||+|||+|| ||+.|.|+|++||++| |++.|++|||||-+.++-+=+++.|||..+
T Consensus 2 ~~v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y-~~v~Flkvdvde~~~~~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 2 VEVETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY-PDVVFLKVDVDELEEVAKEFNVKAMPTFVF 80 (106)
T ss_pred ceEEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHC-CCCEEEEEecccCHhHHHhcCceEeeEEEE
Confidence 456777778777744 6999999999999 9999999999999999 889999999999777777777999999999
Q ss_pred eeCcccc-cccc
Q 026306 109 FHSPEQA-STRE 119 (240)
Q Consensus 109 w~speqA-~~~G 119 (240)
|+++++. ...|
T Consensus 81 ~k~g~~~~~~vG 92 (106)
T KOG0907|consen 81 YKGGEEVDEVVG 92 (106)
T ss_pred EECCEEEEEEec
Confidence 9995554 4444
No 2
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.78 E-value=4.5e-19 Score=141.85 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=72.1
Q ss_pred CHHHHHHHhh--cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCc-ceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 38 SEREFVHILH--QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPH-VKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 38 SE~qwD~~L~--eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPd-VlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
|.++|++.+. +++||||+|+|+|| ||+.|+|+|+|+|.+| ++ +.|++|||||+|.+.-.=.++-||+.-+|++.+
T Consensus 1 ~~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~-~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 1 SKKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDL-SKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred CHHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHc-cCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 5789999997 49999999999999 9999999999999999 87 999999999999976655688899999999988
Q ss_pred ccccc
Q 026306 114 QASTR 118 (240)
Q Consensus 114 qA~~~ 118 (240)
+--+-
T Consensus 80 h~~~d 84 (114)
T cd02986 80 HMKVD 84 (114)
T ss_pred EEEEe
Confidence 76553
No 3
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.74 E-value=5.5e-18 Score=134.42 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=73.6
Q ss_pred CHHHHHHHhhc--CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccc
Q 026306 38 SEREFVHILHQ--GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 38 SE~qwD~~L~e--GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speq 114 (240)
|.++|++.+.. ++||||+|+|+|| ||+.|+|+|+++|.+|-..+.|++||+|+.|..--.-++..+|++.+|++++.
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 56889999974 8999999999999 99999999999999993347999999999997665556999999999999887
Q ss_pred cccccCCCC
Q 026306 115 ASTRERGAD 123 (240)
Q Consensus 115 A~~~G~~~d 123 (240)
...+=|..|
T Consensus 81 v~~~~G~~~ 89 (114)
T cd02954 81 MKIDLGTGN 89 (114)
T ss_pred EEEEcCCCC
Confidence 777644444
No 4
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=7.3e-18 Score=152.57 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=82.1
Q ss_pred ceEEecCHHHHHHHhhc--CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 32 RVIHFTSEREFVHILHQ--GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~e--GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
.|+.|.|.++|+..|.. ++.|||+|||+|| ||+++.|.|+.||.+| |...|++|||||-.+.--+-.|+.|||.=.
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-p~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-PGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-cccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 48999999999999988 7999999999999 9999999999999999 999999999999998888888999999999
Q ss_pred eeCcc-ccccccCCCCCC
Q 026306 109 FHSPE-QASTRERGADPN 125 (240)
Q Consensus 109 w~spe-qA~~~G~~~d~~ 125 (240)
|.|+. -+..+| +|++
T Consensus 81 f~ng~kid~~qG--Ad~~ 96 (288)
T KOG0908|consen 81 FRNGVKIDQIQG--ADAS 96 (288)
T ss_pred EecCeEeeeecC--CCHH
Confidence 99954 455666 4543
No 5
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=1.2e-17 Score=123.94 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=70.8
Q ss_pred cCHHHHHHHhhc--CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc---chhhhcccccCCeEEEee
Q 026306 37 TSEREFVHILHQ--GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP---GFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 37 tSE~qwD~~L~e--GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP---~fcvtRqvtkmP~Ielw~ 110 (240)
||.++|++.+.+ |+||||+|+|+|| ||+.|.|.|+++|.+| +++.|++||+|+-+ .++-..+|+.+|++-+|+
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 689999999976 9999999999999 9999999999999999 99999999999975 455555699999999999
Q ss_pred Ccccccc
Q 026306 111 SPEQAST 117 (240)
Q Consensus 111 speqA~~ 117 (240)
+++....
T Consensus 80 ~G~~v~~ 86 (103)
T cd02985 80 DGEKIHE 86 (103)
T ss_pred CCeEEEE
Confidence 8665433
No 6
>PTZ00051 thioredoxin; Provisional
Probab=99.71 E-value=2.7e-17 Score=117.37 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=78.8
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
|..++|+++|.+++.++++++|.|+|+|| +|+.|.|.|+++|+++ +++.|+.||+++.+..+-.=+++.+|++-+|++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-CCcEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 67899999999999999999999999999 9999999999999998 899999999999987766556999999999999
Q ss_pred ccccccccCC
Q 026306 112 PEQASTRERG 121 (240)
Q Consensus 112 peqA~~~G~~ 121 (240)
++......|.
T Consensus 81 g~~~~~~~G~ 90 (98)
T PTZ00051 81 GSVVDTLLGA 90 (98)
T ss_pred CeEEEEEeCC
Confidence 7666554443
No 7
>PHA02278 thioredoxin-like protein
Probab=99.71 E-value=2.4e-17 Score=126.12 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=73.5
Q ss_pred cCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc---chhhhcc-cccCCeEEEeeC
Q 026306 37 TSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP---GFCLTRQ-RKEYPFIEIFHS 111 (240)
Q Consensus 37 tSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP---~fcvtRq-vtkmP~Ielw~s 111 (240)
.|+++|.+.+.++.||||+|+|+|| ||+.|+|.|+++|.++..++.|++||+|+.+ .....|- +..+|++=+|++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5899999999999999999999999 9999999999999997667899999999863 2344444 999999999999
Q ss_pred ccccccccCCC
Q 026306 112 PEQASTRERGA 122 (240)
Q Consensus 112 peqA~~~G~~~ 122 (240)
++....+.|..
T Consensus 82 G~~v~~~~G~~ 92 (103)
T PHA02278 82 GQLVKKYEDQV 92 (103)
T ss_pred CEEEEEEeCCC
Confidence 87776664443
No 8
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.71 E-value=4.4e-17 Score=124.57 Aligned_cols=87 Identities=24% Similarity=0.312 Sum_probs=77.9
Q ss_pred CCcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEE
Q 026306 29 GPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIE 107 (240)
Q Consensus 29 g~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ie 107 (240)
+-++|..|+|+++|.+.+.++.+|||+|+|+|| +|+.|+|+|+++|.+| |+++|++||+++.|..-=.-+++..|++-
T Consensus 2 ~~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 457899999999999999999999999999999 9999999999999998 99999999999998644333499999999
Q ss_pred EeeCccccc
Q 026306 108 IFHSPEQAS 116 (240)
Q Consensus 108 lw~speqA~ 116 (240)
+|++++.-.
T Consensus 81 ~fk~G~~v~ 89 (113)
T cd02989 81 LFKNGKTVD 89 (113)
T ss_pred EEECCEEEE
Confidence 999976543
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.7e-17 Score=137.59 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=87.2
Q ss_pred cceEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 31 SRVIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
-+.+.+.|-++|+..+.+ +.||+|+|+|+|| ||+.|.|.|||++++|.-.++|++||.|+.|-.=..=.|+-.|+|=+
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 467889999999999866 9999999999999 99999999999999998899999999999998877666999999999
Q ss_pred eeCccccccccCCCCC
Q 026306 109 FHSPEQASTRERGADP 124 (240)
Q Consensus 109 w~speqA~~~G~~~d~ 124 (240)
|+++|+-...+|..|+
T Consensus 122 fknGe~~d~~vG~~~~ 137 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPK 137 (150)
T ss_pred EECCEEeeeecccCCH
Confidence 9999999888888876
No 10
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.70 E-value=1.3e-16 Score=131.62 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=90.1
Q ss_pred CCCCCcceEEecCHHHHHHHhhc-C--CcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-c
Q 026306 26 KDLGPSRVIHFTSEREFVHILHQ-G--YPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-R 100 (240)
Q Consensus 26 ~dlg~SrVi~ItSE~qwD~~L~e-G--kPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-v 100 (240)
+...-+.|+.|+++++|.+.+.+ + .+|||+|+|+|| ||+.|+|+|++||++| |+++|++||+++. .+..+- +
T Consensus 57 ~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~--~l~~~f~v 133 (175)
T cd02987 57 FGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT--GASDEFDT 133 (175)
T ss_pred ccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch--hhHHhCCC
Confidence 33457889999999999999976 3 599999999999 9999999999999998 9999999999986 667776 9
Q ss_pred ccCCeEEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhc
Q 026306 101 KEYPFIEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQG 153 (240)
Q Consensus 101 tkmP~Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g 153 (240)
..+|++=+|++++.....-|..+-. +-+.+.--+..||.++|
T Consensus 134 ~~vPTlllyk~G~~v~~~vG~~~~~-----------g~~f~~~~le~~L~~~g 175 (175)
T cd02987 134 DALPALLVYKGGELIGNFVRVTEDL-----------GEDFDAEDLESFLVEYG 175 (175)
T ss_pred CCCCEEEEEECCEEEEEEechHHhc-----------CCCCCHHHHHHHHHhcC
Confidence 9999999999976655443332211 11455556666666665
No 11
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=7.1e-17 Score=121.27 Aligned_cols=87 Identities=28% Similarity=0.331 Sum_probs=73.7
Q ss_pred CcceEEecCHHHHHHHhhcC---CcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCe
Q 026306 30 PSRVIHFTSEREFVHILHQG---YPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPF 105 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~eG---kPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~ 105 (240)
-++|+.|++ ++|.+.+.+. .||||+|+|+|| ||+.|+|.|+++|.+| +++.|++||+++. ..+-.=+++.+|+
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 478999999 8999998763 999999999999 9999999999999999 8999999999998 3332224999999
Q ss_pred EEEeeCcccc-cccc
Q 026306 106 IEIFHSPEQA-STRE 119 (240)
Q Consensus 106 Ielw~speqA-~~~G 119 (240)
+-+|++++.. ...|
T Consensus 80 ~~~f~~G~~v~~~~G 94 (113)
T cd02957 80 LLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEECCEEEEEEec
Confidence 9999995544 3334
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.68 E-value=2.5e-16 Score=114.30 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=73.4
Q ss_pred ceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEee
Q 026306 32 RVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~ 110 (240)
+|+.+ +.+.|++.+.++++++|.|+|+|| +|+.|.|.|+++|.+|...+.|.+||||+.|..|-.=+++.+|++-+|+
T Consensus 2 ~~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 35666 577999999889999999999999 9999999999999999778999999999999988666699999999998
Q ss_pred Cccc
Q 026306 111 SPEQ 114 (240)
Q Consensus 111 speq 114 (240)
+++.
T Consensus 81 ~g~~ 84 (101)
T cd03003 81 SGMN 84 (101)
T ss_pred CCCC
Confidence 7643
No 13
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.67 E-value=1.2e-16 Score=113.55 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=76.7
Q ss_pred CHHHHHHHhhcC--CcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccc
Q 026306 38 SEREFVHILHQG--YPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 38 SE~qwD~~L~eG--kPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speq 114 (240)
|+++|++.+.+. ++|+|.|+|+|| +|+.|+|.|+++|.++++++.|++||+++.|..+-.=+++.+|++-+|.+++.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEE
Confidence 789999999875 999999999999 99999999999999987999999999999988664444999999999999877
Q ss_pred cccccCCCCCCc
Q 026306 115 ASTRERGADPNI 126 (240)
Q Consensus 115 A~~~G~~~d~~i 126 (240)
.+...|..++.+
T Consensus 81 ~~~~~g~~~~~l 92 (97)
T cd02984 81 VDRVSGADPKEL 92 (97)
T ss_pred EEEEeCCCHHHH
Confidence 766555544433
No 14
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.66 E-value=1.8e-16 Score=129.97 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=71.3
Q ss_pred ceEEecCHHHHHHHhh--cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccc-cCCeEE
Q 026306 32 RVIHFTSEREFVHILH--QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRK-EYPFIE 107 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~--eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvt-kmP~Ie 107 (240)
-|.+++|.++|++.+. +++||||+|+|+|| ||+.|+|.|+|+|.++...+.|++||||++|.+--.=.+. -+|++-
T Consensus 4 ~l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 4 LLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMF 83 (142)
T ss_pred hHhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence 4667899999999995 38999999999999 9999999999999999334888999999999877666677 667777
Q ss_pred EeeCcc
Q 026306 108 IFHSPE 113 (240)
Q Consensus 108 lw~spe 113 (240)
+|++++
T Consensus 84 ffk~g~ 89 (142)
T PLN00410 84 FFRNKH 89 (142)
T ss_pred EEECCe
Confidence 999875
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.65 E-value=5.5e-16 Score=112.38 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=73.1
Q ss_pred cceEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 31 SRVIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+|+.+ +.++|++.+.+ ++||+|.|+|+|| +|+.|.|.|+++|.+|...+.|.+|||++.+..|-.-++..+|++-+
T Consensus 1 ~~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 1 PSVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred CcceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 456666 57799998765 8899999999999 99999999999999997789999999999999987777999999999
Q ss_pred eeCc
Q 026306 109 FHSP 112 (240)
Q Consensus 109 w~sp 112 (240)
|.++
T Consensus 80 ~~~g 83 (104)
T cd03004 80 YPGN 83 (104)
T ss_pred EcCC
Confidence 9886
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.65 E-value=7.4e-16 Score=108.36 Aligned_cols=100 Identities=24% Similarity=0.404 Sum_probs=83.4
Q ss_pred EecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 35 HFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 35 ~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
..-+.++|++.+.+ ++++||.|+++|| +|+.|.|.|+++|++|..++.|+.||+++.+..|-.=+++.+|++-+|+++
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred EECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 34578899999998 9999999999999 999999999999999955999999999999988866669999999999996
Q ss_pred cccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHh
Q 026306 113 EQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQ 152 (240)
Q Consensus 113 eqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~ 152 (240)
+... .|+..++.--+.+|+++|
T Consensus 82 ~~~~------------------~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 KEVK------------------RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEE------------------EEESSSSHHHHHHHHHHH
T ss_pred cEEE------------------EEECCCCHHHHHHHHHcC
Confidence 5433 223345555666776665
No 17
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.63 E-value=1.3e-15 Score=118.44 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=73.6
Q ss_pred CCCcceEEecCHHHHHHH---hhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-ccc
Q 026306 28 LGPSRVIHFTSEREFVHI---LHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKE 102 (240)
Q Consensus 28 lg~SrVi~ItSE~qwD~~---L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtk 102 (240)
.+.+.|+..+ .+.|++. +.++++++|.|+|+|| ||+.|.|.|+|+|.+|...+.|.+|||++-+..|-.+. +..
T Consensus 6 ~~~~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 6 SQRSPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCCCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc
Confidence 3567788765 4577776 5779999999999999 99999999999999997779999999999998886565 899
Q ss_pred CCeEEEeeCcc
Q 026306 103 YPFIEIFHSPE 113 (240)
Q Consensus 103 mP~Ielw~spe 113 (240)
+|+|.+|++++
T Consensus 85 ~PTl~lf~~g~ 95 (113)
T cd03006 85 FPVIHLYYRSR 95 (113)
T ss_pred cCEEEEEECCc
Confidence 99999999854
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.62 E-value=3e-15 Score=118.64 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=84.0
Q ss_pred CcCCCCCcceEEecCHHHHHHHhhc-CCcEEEEEeecCC-c--cc--cchHHHHHHHhhh--CCcceEEEEECCCccchh
Q 026306 24 YPKDLGPSRVIHFTSEREFVHILHQ-GYPVVVAFTIRGN-L--TK--HLDRVLEEAAAEF--YPHVKFMRVECPKYPGFC 95 (240)
Q Consensus 24 yp~dlg~SrVi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-P--cr--yMkPvFEELAAeY--yPdVlFl~VDVDEVP~fc 95 (240)
.|+..|..+|+.++ ++.|++.+.+ +.||||+|+|.|| | |+ .|.|.|+++|+++ ..++.|.+||||+.|..+
T Consensus 2 ~~~~~~~~~v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La 80 (120)
T cd03065 2 FPEYDGKDRVIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVA 80 (120)
T ss_pred CcccCCCcceeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHH
Confidence 57788999999997 5999999977 7799999999999 9 99 9999999999999 778999999999999888
Q ss_pred hhcccccCCeEEEeeCcccccccc
Q 026306 96 LTRQRKEYPFIEIFHSPEQASTRE 119 (240)
Q Consensus 96 vtRqvtkmP~Ielw~speqA~~~G 119 (240)
-.=++..+|||-+|++++-.+..|
T Consensus 81 ~~~~I~~iPTl~lfk~G~~v~~~G 104 (120)
T cd03065 81 KKLGLDEEDSIYVFKDDEVIEYDG 104 (120)
T ss_pred HHcCCccccEEEEEECCEEEEeeC
Confidence 877799999999999977444333
No 19
>PRK10996 thioredoxin 2; Provisional
Probab=99.60 E-value=3.3e-15 Score=117.53 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=86.8
Q ss_pred HHHHhhcccccCCcCCCCCcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC
Q 026306 12 SHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 12 ~~lr~~~kyytgyp~dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE 90 (240)
-|+|++|- +-+..+-++.++.. +.++|++++.++++|+|.|+|+|| +|+.|.|.|+++|.++..++.|++||+++
T Consensus 19 ~~~~~~~~---~~~~~~~~~~~i~~-~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~ 94 (139)
T PRK10996 19 IEDAAKCG---RCGHDLFDGEVINA-TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94 (139)
T ss_pred ccCCCcCC---CCCCccCCCCCEEc-CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 36788884 34555556667774 788999999999999999999999 99999999999999998899999999999
Q ss_pred ccchhhhcccccCCeEEEeeCcccccc
Q 026306 91 YPGFCLTRQRKEYPFIEIFHSPEQAST 117 (240)
Q Consensus 91 VP~fcvtRqvtkmP~Ielw~speqA~~ 117 (240)
.|.++-.-++..+|++-+|++++....
T Consensus 95 ~~~l~~~~~V~~~Ptlii~~~G~~v~~ 121 (139)
T PRK10996 95 ERELSARFRIRSIPTIMIFKNGQVVDM 121 (139)
T ss_pred CHHHHHhcCCCccCEEEEEECCEEEEE
Confidence 999876666999999999988665444
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.59 E-value=4.4e-15 Score=109.24 Aligned_cols=82 Identities=26% Similarity=0.416 Sum_probs=71.3
Q ss_pred cceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC---C---cceEEEEECCCccchhhhcccccC
Q 026306 31 SRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---P---HVKFMRVECPKYPGFCLTRQRKEY 103 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy---P---dVlFl~VDVDEVP~fcvtRqvtkm 103 (240)
|.|+.++ .+.|++.++++++|+|.|+|+|| +|+.|.|.++++|+++. + .+.|.+||||+.+..|-.=+++.+
T Consensus 1 ~~v~~l~-~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 1 SEIVSLT-SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred CceEEcC-HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 5678885 56999999889999999999999 99999999999999873 3 389999999999887744459999
Q ss_pred CeEEEeeCcc
Q 026306 104 PFIEIFHSPE 113 (240)
Q Consensus 104 P~Ielw~spe 113 (240)
|++-+|++++
T Consensus 80 Ptl~~~~~g~ 89 (108)
T cd02996 80 PTLKLFRNGM 89 (108)
T ss_pred CEEEEEeCCc
Confidence 9999998754
No 21
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.59 E-value=5.1e-15 Score=109.48 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=72.2
Q ss_pred EecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCCccchhhhcc-cccCCeEEEeeC
Q 026306 35 HFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHS 111 (240)
Q Consensus 35 ~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~s 111 (240)
.|+|.++|+.++++|+||||.|+|+|| ||+.|.|.|+++|.+|.. .+.|..||+| .+.. ..+- ++.+|++-+|++
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~-~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDT-LKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHH-HHHcCCCcCcEEEEEEC
Confidence 478999999999999999999999999 999999999999999953 4889999999 5654 3444 999999999999
Q ss_pred ccccccccC
Q 026306 112 PEQASTRER 120 (240)
Q Consensus 112 peqA~~~G~ 120 (240)
++....+.|
T Consensus 81 g~~~~~~~G 89 (102)
T cd02948 81 GELVAVIRG 89 (102)
T ss_pred CEEEEEEec
Confidence 765555554
No 22
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.55 E-value=1.1e-14 Score=115.61 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=70.4
Q ss_pred EecCHHHHHHHhhc--CCcEEEEEee-------cCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc------chhhhc
Q 026306 35 HFTSEREFVHILHQ--GYPVVVAFTI-------RGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP------GFCLTR 98 (240)
Q Consensus 35 ~ItSE~qwD~~L~e--GkPVVV~FTA-------sWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP------~fcvtR 98 (240)
.++|.++|.+.+.+ |+||||+|+| +|| ||+.|+|.|++++.+|-.+++|++||||+.| .-...+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 56799999999976 8999999999 999 9999999999999999337999999999865 233444
Q ss_pred c-cc-cCCeEEEeeCccccccccCCCCCCc
Q 026306 99 Q-RK-EYPFIEIFHSPEQASTRERGADPNI 126 (240)
Q Consensus 99 q-vt-kmP~Ielw~speqA~~~G~~~d~~i 126 (240)
. +. .+||+-+|+. .++++++++
T Consensus 85 ~~I~~~iPT~~~~~~------~~~l~~~~c 108 (119)
T cd02952 85 PKLTTGVPTLLRWKT------PQRLVEDEC 108 (119)
T ss_pred cCcccCCCEEEEEcC------Cceecchhh
Confidence 3 65 8999999943 346666654
No 23
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.54 E-value=1.7e-14 Score=102.93 Aligned_cols=76 Identities=24% Similarity=0.380 Sum_probs=66.5
Q ss_pred HHHHHhh-c-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccccc
Q 026306 41 EFVHILH-Q-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQAS 116 (240)
Q Consensus 41 qwD~~L~-e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speqA~ 116 (240)
+|++.+. . |+||||.|+|+|| +|+.|.|.|+++|..|...+.|+.||+++.+..+-.=+++.+|++-++++++...
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEee
Confidence 5777774 3 8899999999999 9999999999999999667899999999998887766799999999998865543
No 24
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.54 E-value=2.9e-14 Score=101.39 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=71.2
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECCC--ccchhhhcccccCCeEE
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECPK--YPGFCLTRQRKEYPFIE 107 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVDE--VP~fcvtRqvtkmP~Ie 107 (240)
|+.++ .++|+..+.++++++|.|+|+|| +|+.+.|.++++|.++. ..+.|..|||++ .+.+|-.-++..+|++-
T Consensus 2 ~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLT-DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEec-hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 55664 55999999999999999999999 99999999999999995 568999999999 98888666699999999
Q ss_pred EeeCccc
Q 026306 108 IFHSPEQ 114 (240)
Q Consensus 108 lw~speq 114 (240)
+|.+++.
T Consensus 81 ~~~~g~~ 87 (104)
T cd02997 81 YFENGKF 87 (104)
T ss_pred EEeCCCe
Confidence 9987653
No 25
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.54 E-value=2.5e-14 Score=117.07 Aligned_cols=91 Identities=18% Similarity=0.338 Sum_probs=75.8
Q ss_pred cCCCCCcceEEecCHHHHHHHhhc--CCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhccc
Q 026306 25 PKDLGPSRVIHFTSEREFVHILHQ--GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQR 100 (240)
Q Consensus 25 p~dlg~SrVi~ItSE~qwD~~L~e--GkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRqv 100 (240)
|...+++.|+.++. ++|++.+.+ +++|||+|+|+|| ||+.|.|.|+++|.+|. +++.|++||||+.|..+-.-++
T Consensus 22 ~~~~~~~~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 22 PLYMGPEHIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CccCCCCccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence 34445678888774 689999855 6899999999999 99999999999999995 4599999999999987655557
Q ss_pred cc------CCeEEEeeCccccc
Q 026306 101 KE------YPFIEIFHSPEQAS 116 (240)
Q Consensus 101 tk------mP~Ielw~speqA~ 116 (240)
+. +||+-+|++++...
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEE
Confidence 77 99999999955443
No 26
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.53 E-value=3.5e-14 Score=102.74 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=70.2
Q ss_pred eEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC--ccchhhhcccccCCeEEE
Q 026306 33 VIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK--YPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE--VP~fcvtRqvtkmP~Iel 108 (240)
|+.++ .++|++.+.+ |+|++|.|+|+|| +|+.|.|.|+++|.++...+.|+.|||++ .+..|-.-++..+|++-+
T Consensus 2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 45554 4589998866 9999999999999 99999999999999997779999999999 888887667999999999
Q ss_pred eeCcc
Q 026306 109 FHSPE 113 (240)
Q Consensus 109 w~spe 113 (240)
|.+..
T Consensus 81 ~~~~~ 85 (109)
T cd03002 81 FRPPK 85 (109)
T ss_pred EeCCC
Confidence 98754
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.53 E-value=4.3e-14 Score=102.02 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=69.0
Q ss_pred cceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 31 SRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|.|+.++ ++.|++++ +|. ++|.|+|+|| ||+.|.|.|+++|.++. .++.|..|||++-|..|-.-+++.+|++-+
T Consensus 1 ~~v~~l~-~~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 1 SNVVELT-DSNWTLVL-EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred CceEEcC-hhhHHHHh-CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 5788885 77999987 454 7899999999 99999999999999874 369999999999999876666999999999
Q ss_pred eeCcc
Q 026306 109 FHSPE 113 (240)
Q Consensus 109 w~spe 113 (240)
+.+++
T Consensus 78 ~~~g~ 82 (101)
T cd02994 78 AKDGV 82 (101)
T ss_pred eCCCC
Confidence 87654
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.52 E-value=3.4e-14 Score=107.02 Aligned_cols=80 Identities=14% Similarity=0.085 Sum_probs=69.1
Q ss_pred CHHHHHHHh-h--cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 38 SEREFVHIL-H--QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 38 SE~qwD~~L-~--eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
++++|++.+ . +|+|++|.|+|+|| +|+.|.|.|+++|++|.. ++.|++||+|+.+..+-.-++..+|++-+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 678888655 3 48999999999999 999999999999999942 599999999999998877779999999999886
Q ss_pred ccccc
Q 026306 113 EQAST 117 (240)
Q Consensus 113 eqA~~ 117 (240)
+....
T Consensus 90 ~~~~~ 94 (111)
T cd02963 90 QVTFY 94 (111)
T ss_pred EEEEE
Confidence 54433
No 29
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.51 E-value=2.3e-14 Score=107.03 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=58.9
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC-CccchhhhcccccCCeEEEeeCcc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP-KYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD-EVP~fcvtRqvtkmP~Ielw~spe 113 (240)
.|++|+|.|+|+|| ||+.|.|.|+++|.+| +++.|+.||++ +.|..+-.=+++.+||+-+|++++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~-~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~ 83 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMF-PQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTP 83 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHh-ccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCc
Confidence 39999999999999 9999999999999999 88999999999 888777555599999999998763
No 30
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.50 E-value=3.7e-14 Score=119.22 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=70.5
Q ss_pred CCcceEEecCHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccC
Q 026306 29 GPSRVIHFTSEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEY 103 (240)
Q Consensus 29 g~SrVi~ItSE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkm 103 (240)
+-+.|..| |.++|...+.+ +.+|||||+|+|| ||+.|+|.|++||++| ++++|++||+++ |+.+- ++.+
T Consensus 80 ~~G~v~ei-s~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-~~vkFvkI~ad~----~~~~~~i~~l 153 (192)
T cd02988 80 KFGEVYEI-SKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-PDTKFVKIISTQ----CIPNYPDKNL 153 (192)
T ss_pred CCCeEEEe-CHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-CCCEEEEEEhHH----hHhhCCCCCC
Confidence 56889999 56677766644 4699999999999 9999999999999998 999999999996 45665 9999
Q ss_pred CeEEEeeCcccccc
Q 026306 104 PFIEIFHSPEQAST 117 (240)
Q Consensus 104 P~Ielw~speqA~~ 117 (240)
||+=+|++++.-..
T Consensus 154 PTlliyk~G~~v~~ 167 (192)
T cd02988 154 PTILVYRNGDIVKQ 167 (192)
T ss_pred CEEEEEECCEEEEE
Confidence 99999999764433
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=99.49 E-value=1.3e-13 Score=101.10 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=71.5
Q ss_pred ceEEecCHHHHHHH-hhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEe
Q 026306 32 RVIHFTSEREFVHI-LHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIF 109 (240)
Q Consensus 32 rVi~ItSE~qwD~~-L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw 109 (240)
.|+.++. ++|.+. +..++|++|+|+|+|| +|+.|.|.|+++|++|-+.+.|..||+++-+..+-.-+++.+|++-+|
T Consensus 4 ~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred cceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 5788866 688865 4559999999999999 899999999999999977799999999999988766669999999999
Q ss_pred eCccc
Q 026306 110 HSPEQ 114 (240)
Q Consensus 110 ~speq 114 (240)
.+++.
T Consensus 83 ~~G~~ 87 (109)
T PRK09381 83 KNGEV 87 (109)
T ss_pred eCCeE
Confidence 87543
No 32
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.46 E-value=3.6e-13 Score=95.34 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=70.5
Q ss_pred eEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECCC-ccchhhhcccccCCeEE
Q 026306 33 VIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECPK-YPGFCLTRQRKEYPFIE 107 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVDE-VP~fcvtRqvtkmP~Ie 107 (240)
|+.+++ ++|+..+.+ ++++||.|+|+|| +|+.|.|.|+++|.++. +++.|+.+|+++ .+.+|-.-++..+|++-
T Consensus 2 ~~~l~~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTD-SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcch-hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 456654 688888865 7899999999999 99999999999999995 569999999999 99999988899999999
Q ss_pred EeeCc
Q 026306 108 IFHSP 112 (240)
Q Consensus 108 lw~sp 112 (240)
+|.+.
T Consensus 81 ~~~~~ 85 (105)
T cd02998 81 FFPKG 85 (105)
T ss_pred EEeCC
Confidence 99875
No 33
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.44 E-value=4.3e-13 Score=95.46 Aligned_cols=80 Identities=29% Similarity=0.457 Sum_probs=70.0
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCC---cceEEEEECCCccchhhhcccccCCeEEE
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP---HVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP---dVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+.++ .++|++.+.+| +++|.|+|+|| +|+.|.|.|+++|.++.. ++.|+.|||++-+..|-.-++..+|++-+
T Consensus 2 ~~~l~-~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELT-EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECC-HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 45554 56799999877 69999999999 999999999999999954 79999999999998888777999999999
Q ss_pred eeCccc
Q 026306 109 FHSPEQ 114 (240)
Q Consensus 109 w~speq 114 (240)
|.+.+.
T Consensus 80 ~~~g~~ 85 (102)
T cd03005 80 FKDGEK 85 (102)
T ss_pred EeCCCe
Confidence 987543
No 34
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.44 E-value=2.5e-13 Score=99.06 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCcEEEEEeecCC-ccccchHHH---HHHHhhhCCcceEEEEECCC----ccchhhhcccccCCeEEEee
Q 026306 39 EREFVHILHQGYPVVVAFTIRGN-LTKHLDRVL---EEAAAEFYPHVKFMRVECPK----YPGFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 39 E~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvF---EELAAeYyPdVlFl~VDVDE----VP~fcvtRqvtkmP~Ielw~ 110 (240)
|++|++.+.+|+||+|.|+|+|| ||+.|.|.+ ++++..+..++.|+.||+++ .+.++-.-++..+|+|-+|.
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 57899999999999999999999 999999998 78999985589999999987 56665555599999999997
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.44 E-value=4.3e-13 Score=100.01 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=67.1
Q ss_pred ceEEecCHHHHHHHhh---cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCC-ccchhhhc-ccccCC
Q 026306 32 RVIHFTSEREFVHILH---QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPK-YPGFCLTR-QRKEYP 104 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~---eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDE-VP~fcvtR-qvtkmP 104 (240)
+|+.++. ++|++++. .|+|++|.|.|+|| +|+.|+|.|+++|.+|.. ++.|..||+|+ -..+|..+ ++..+|
T Consensus 2 ~v~~~~~-~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSR-AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccH-HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 4566655 49998884 38999999999999 999999999999999964 49999999998 56677665 499999
Q ss_pred eEEEeeC
Q 026306 105 FIEIFHS 111 (240)
Q Consensus 105 ~Ielw~s 111 (240)
+|-+|.+
T Consensus 81 ti~~f~~ 87 (109)
T cd02993 81 TILFFPK 87 (109)
T ss_pred EEEEEcC
Confidence 9999975
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.43 E-value=5.6e-13 Score=93.91 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=69.4
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCC--cceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP--HVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP--dVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
+.+.|++.+.++++++|.|+|+|| +|+.|.|.|+++|..|.. ++.|..||+++-+.+|-.-++..+|++-+|.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 357899999999999999999999 999999999999999964 6999999999999999777899999999998754
No 37
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.42 E-value=4.8e-13 Score=95.36 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=69.6
Q ss_pred eEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEee
Q 026306 33 VIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~ 110 (240)
|+.+ +.++|.+.+.+ ++|++|.|+|+|| +|+.|.|.|+++|++|...+.|..+|+++-+..|-.=++..+|++-+|.
T Consensus 2 v~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 2 VVEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred eEEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 4555 56788888866 7789999999999 9999999999999999788999999999999988655699999999998
Q ss_pred Cc
Q 026306 111 SP 112 (240)
Q Consensus 111 sp 112 (240)
+.
T Consensus 81 ~~ 82 (103)
T cd03001 81 AG 82 (103)
T ss_pred CC
Confidence 65
No 38
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.40 E-value=1.3e-12 Score=92.67 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=65.6
Q ss_pred eEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCC--cceEEEEECCCccchhhhcccccCCeEEE
Q 026306 33 VIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP--HVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyP--dVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|..++ .++|++.+.+ +++++|.|+|+|| +|+.|.|.|+++|++|.. ++.|..||+++- ..+-.-.+..+|++-+
T Consensus 2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 44444 5589998866 7999999999999 999999999999999843 599999999986 4454445899999999
Q ss_pred eeCcc
Q 026306 109 FHSPE 113 (240)
Q Consensus 109 w~spe 113 (240)
|.+++
T Consensus 80 ~~~~~ 84 (104)
T cd02995 80 FPAGD 84 (104)
T ss_pred EcCCC
Confidence 98754
No 39
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.40 E-value=7.3e-13 Score=105.17 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=72.8
Q ss_pred CHHHHHHHhhcCCcEEEEEeecC--C-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccc
Q 026306 38 SEREFVHILHQGYPVVVAFTIRG--N-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsW--C-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speq 114 (240)
|++.|++.+..|.++||.|+|.| | +|+.|+|.|+++|.+|...+.|++||+|+-|...-.-+|..+||+-+|++++.
T Consensus 16 ~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~ 95 (111)
T cd02965 16 DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRY 95 (111)
T ss_pred ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEE
Confidence 66778888888999999999997 9 99999999999999995558999999999996665556999999999999877
Q ss_pred cccccCC
Q 026306 115 ASTRERG 121 (240)
Q Consensus 115 A~~~G~~ 121 (240)
-..+.|.
T Consensus 96 v~~~~G~ 102 (111)
T cd02965 96 VGVLAGI 102 (111)
T ss_pred EEEEeCc
Confidence 6665443
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.39 E-value=8e-13 Score=100.91 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=62.9
Q ss_pred HHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 42 FVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 42 wD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
+.+.+..+.+|||.|+|+|| ||+.|+|+|+++|+++ +.+.|..||+|+.|...-.=++...|++-+|+++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence 66667778999999999999 9999999999999998 9999999999999876655559999999999864
No 41
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.39 E-value=1.2e-12 Score=96.07 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=63.4
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC---CcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy---PdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
=++.|++. .++++|+|.|+|+|| ||+.|.|.|+++|.+|. .++.|..+|+++.|..|-.-+++.+|++=+|++
T Consensus 5 ~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~ 81 (104)
T cd03000 5 LDDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKG 81 (104)
T ss_pred chhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcC
Confidence 35778874 457799999999999 99999999999999983 359999999999998887667999999999964
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.38 E-value=9.2e-13 Score=104.54 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=63.3
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCc--cchhhhcccccCCeEEEee-Ccc
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY--PGFCLTRQRKEYPFIEIFH-SPE 113 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEV--P~fcvtRqvtkmP~Ielw~-spe 113 (240)
+..+|++.+.+|+||||.|+|+|| +|+.|.|.|++++.+|..++.|+.||+|.- +..+-.=++..+|++-+|. +++
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 456788888889999999999999 999999999999999966689999999864 3334333399999999994 444
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.38 E-value=2.2e-12 Score=90.07 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=65.0
Q ss_pred CHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 38 SEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 38 SE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
|.++|...+.+ +++|||.|+++|| +|+.+.|.|++++.++..++.|+.||+++-+..+-.=++..+|++-+|.+++
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45678887766 7799999999999 9999999999999999557999999999987765433499999999997654
No 44
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.37 E-value=2.1e-12 Score=98.47 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=74.4
Q ss_pred eEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhC---CcceEEEEECCC--ccchhhhcccccCCe
Q 026306 33 VIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PHVKFMRVECPK--YPGFCLTRQRKEYPF 105 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYy---PdVlFl~VDVDE--VP~fcvtRqvtkmP~ 105 (240)
|+.+ |.+.|+..+.+ ++||||.|+|+|| +|+.|.|.|+++|.+|. +.+.|..|||+. .+..|-.-++..+|+
T Consensus 3 v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 3 VIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred eEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4555 57799999877 6799999999999 99999999999999873 238999999864 566676666999999
Q ss_pred EEEeeCccccccccCCCCCC
Q 026306 106 IEIFHSPEQASTRERGADPN 125 (240)
Q Consensus 106 Ielw~speqA~~~G~~~d~~ 125 (240)
+-+|++.+..+..|...|-.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~ 101 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGP 101 (114)
T ss_pred EEEECCCCccCCCCCcccCC
Confidence 99999977666667554433
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.37 E-value=3.1e-12 Score=87.74 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=68.9
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhh--CCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEF--YPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeY--yPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
++++|...+.++++++|.|+++|| +|+.+.|.++++|..+ ...+.|+.||+++-+.+|-.=++..+|++=+|.+.
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 457999999998899999999999 9999999999999999 58899999999998888877779999999999765
No 46
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.33 E-value=5.2e-12 Score=84.54 Aligned_cols=73 Identities=32% Similarity=0.476 Sum_probs=67.3
Q ss_pred HHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 40 REFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 40 ~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
++|++.+.+++|++|.|+++|| +|+.+.|.+++++.+ ++++.|+.||+++.+.++-.=++..+|++=+|.+++
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 3678888889999999999999 999999999999999 599999999999999888877899999999998765
No 47
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.30 E-value=9.6e-12 Score=107.73 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=72.8
Q ss_pred CcceEEecCHHHHHHHhhc-----CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccC
Q 026306 30 PSRVIHFTSEREFVHILHQ-----GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEY 103 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~e-----GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkm 103 (240)
++.|+.++ ++.|++.+.+ ++|++|.|+|+|| +|+.|.|.++++|.+|...+.|..|||++-+..|-.=+++.+
T Consensus 29 ~~~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 29 ANALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCCcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC
Confidence 56788884 7799998864 5899999999999 999999999999999976799999999999988866569999
Q ss_pred CeEEEeeCc
Q 026306 104 PFIEIFHSP 112 (240)
Q Consensus 104 P~Ielw~sp 112 (240)
|++-+|.++
T Consensus 108 PTl~~f~~G 116 (224)
T PTZ00443 108 PTLLLFDKG 116 (224)
T ss_pred CEEEEEECC
Confidence 999999864
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.29 E-value=1.1e-11 Score=90.14 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=60.9
Q ss_pred HHHh-hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 43 VHIL-HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 43 D~~L-~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
+..| +.++||+|.|+|+|| +|+.+.|.+++++.++-.++.|++||+|+-|...-.=++...|+|-+|++++
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe
Confidence 3344 449999999999999 9999999999999999667999999999998775444499999999998743
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=8.4e-12 Score=107.11 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=64.3
Q ss_pred EecCHHHHHHHhhcC-CcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 35 HFTSEREFVHILHQG-YPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 35 ~ItSE~qwD~~L~eG-kPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
.+.|.+++++++..+ ..+|+.|+|+|| ||++|+|++++||++| |+++|++||.+ =+|...|++.+|+++
T Consensus 2 ~~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 2 NFIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CCCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc--------cCcccceEEEEEECC
Confidence 357899999999864 779999999999 9999999999999999 99999999988 359999999999996
Q ss_pred cc
Q 026306 113 EQ 114 (240)
Q Consensus 113 eq 114 (240)
+.
T Consensus 73 ~~ 74 (204)
T PTZ00062 73 QL 74 (204)
T ss_pred EE
Confidence 64
No 50
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.23 E-value=8.9e-11 Score=102.48 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=71.5
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC---CcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy---PdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+.+ +.+.|+..+.++++++|.|+|+|| +|+.|.|.++++|..+. +++.|..|||++-+..|-.=++..+|++-+
T Consensus 3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 4444 567999999999999999999999 99999999999999874 459999999999998887666999999999
Q ss_pred eeCccc
Q 026306 109 FHSPEQ 114 (240)
Q Consensus 109 w~speq 114 (240)
|.+++.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 987654
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.22 E-value=3.8e-11 Score=114.08 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=72.4
Q ss_pred cCCcCCCCCcc-eEEecCHHHHHHHhh---cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCCccc-h
Q 026306 22 TGYPKDLGPSR-VIHFTSEREFVHILH---QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYPG-F 94 (240)
Q Consensus 22 tgyp~dlg~Sr-Vi~ItSE~qwD~~L~---eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP~-f 94 (240)
+|-.+++-.|. |+.+ |.+.|+.+++ +++||+|+|+|+|| +|+.|.|.|+++|.+|.. ++.|++||||+-+. .
T Consensus 341 ~~~~~dl~~~~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 341 SDAVADIFDSNNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEF 419 (463)
T ss_pred ccccccccCCCCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHH
Confidence 44455554444 5555 5558999986 59999999999999 999999999999999953 38999999997653 4
Q ss_pred hhhc-ccccCCeEEEeeCcc
Q 026306 95 CLTR-QRKEYPFIEIFHSPE 113 (240)
Q Consensus 95 cvtR-qvtkmP~Ielw~spe 113 (240)
+..+ ++..+|+|-+|++..
T Consensus 420 ~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred HHHHcCCCccceEEEEECCC
Confidence 4444 499999999998863
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.19 E-value=1.2e-10 Score=103.81 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=68.2
Q ss_pred CcceEEecCHHHHHHH-hhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECCCccchhhhcccccCCe
Q 026306 30 PSRVIHFTSEREFVHI-LHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECPKYPGFCLTRQRKEYPF 105 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~-L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVDEVP~fcvtRqvtkmP~ 105 (240)
.+.|..+. -+.|++. +.+|++|+|.|+|+|| +|+.|.|.|+++|.++. +++.|++||+++-+..|-.=++..+|+
T Consensus 356 ~~~v~~l~-~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 356 DGPVKVVV-GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCCeEEec-ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 44566665 4677777 4669999999999999 99999999999999984 359999999999877766556999999
Q ss_pred EEEeeCc
Q 026306 106 IEIFHSP 112 (240)
Q Consensus 106 Ielw~sp 112 (240)
+-+|.+.
T Consensus 435 ~~~~~~~ 441 (477)
T PTZ00102 435 ILFVKAG 441 (477)
T ss_pred EEEEECC
Confidence 9999764
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.19 E-value=9.6e-11 Score=111.09 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=81.0
Q ss_pred CCCCCc-ceEEecCHHHHHHHhh---cCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECC-Cccchhhhc
Q 026306 26 KDLGPS-RVIHFTSEREFVHILH---QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECP-KYPGFCLTR 98 (240)
Q Consensus 26 ~dlg~S-rVi~ItSE~qwD~~L~---eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVD-EVP~fcvtR 98 (240)
.|+-.+ .|+.++ .+.|++++. ++++++|.|+|+|| +|+.|+|.|+++|.+|. .++.|.+||+| +-...|..+
T Consensus 339 ~dl~~~~~Vv~Lt-~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~ 417 (457)
T PLN02309 339 ADIFNSQNVVALS-RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQE 417 (457)
T ss_pred ccccCCCCcEECC-HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhh
Confidence 344443 565554 568888874 49999999999999 99999999999999995 35999999999 656666544
Q ss_pred -ccccCCeEEEeeCccccccccCCCCCCceeeeeEeeecc-ccccchhHHHHHHH
Q 026306 99 -QRKEYPFIEIFHSPEQASTRERGADPNITKYAVKVLPFN-YDLSAYGFREYFKR 151 (240)
Q Consensus 99 -qvtkmP~Ielw~speqA~~~G~~~d~~itrY~vkv~pfn-yd~S~YGfreffk~ 151 (240)
+|+.+|||-+|++...- ..+ |+ -.-++.++..|.+.
T Consensus 418 ~~I~~~PTil~f~~g~~~----------~v~-------Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 418 LQLGSFPTILLFPKNSSR----------PIK-------YPSEKRDVDSLLSFVNS 455 (457)
T ss_pred CCCceeeEEEEEeCCCCC----------eee-------cCCCCcCHHHHHHHHHH
Confidence 69999999999864321 122 22 24567777777764
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.18 E-value=1.1e-10 Score=103.93 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=85.2
Q ss_pred CcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC---CcceEEEEECCCccchhhhcccccCCe
Q 026306 30 PSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PHVKFMRVECPKYPGFCLTRQRKEYPF 105 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy---PdVlFl~VDVDEVP~fcvtRqvtkmP~ 105 (240)
++.|+.+ +.+.|+..+.++++++|.|+|+|| +|+.|.|.++++|.++. +++.|.+|||++-+..|-.=+++.+|+
T Consensus 31 ~~~v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 31 SEHVTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPT 109 (477)
T ss_pred CCCcEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccE
Confidence 3566666 567999999999999999999999 99999999999997763 579999999999998887667999999
Q ss_pred EEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHh
Q 026306 106 IEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQ 152 (240)
Q Consensus 106 Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~ 152 (240)
|-+|++++.. .|+-..++-++.+|++++
T Consensus 110 ~~~~~~g~~~-------------------~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 110 IKFFNKGNPV-------------------NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred EEEEECCceE-------------------EecCCCCHHHHHHHHHHh
Confidence 9999975321 233455677888888876
No 55
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.15 E-value=8.5e-11 Score=90.91 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHh----hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-ccc--CCeEEEee-C
Q 026306 41 EFVHIL----HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKE--YPFIEIFH-S 111 (240)
Q Consensus 41 qwD~~L----~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtk--mP~Ielw~-s 111 (240)
+|+..| .+|+||+|+|+|+|| ||+.|.|.+++++..+..+..|+.||+|+-+..-..+- +.. .|++=++. +
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 355555 449999999999999 99999999999988765567899999998764433332 443 89998885 5
Q ss_pred ccccc
Q 026306 112 PEQAS 116 (240)
Q Consensus 112 peqA~ 116 (240)
++...
T Consensus 87 Gk~~~ 91 (117)
T cd02959 87 GDVHP 91 (117)
T ss_pred CCCch
Confidence 55544
No 56
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.14 E-value=1.2e-10 Score=90.97 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=63.8
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch----------hhhc-----ccc
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF----------CLTR-----QRK 101 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f----------cvtR-----qvt 101 (240)
|.+++.+.+.+|+.+||.|+|+|| ||+.|.|+|++++.+. ++.|+.||+|+-+.. ...+ .+.
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 556899999999999999999999 9999999999999995 788999999954421 1222 144
Q ss_pred cCCeEEEeeCccccccc
Q 026306 102 EYPFIEIFHSPEQASTR 118 (240)
Q Consensus 102 kmP~Ielw~speqA~~~ 118 (240)
..|++=+|++++.....
T Consensus 90 ~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVR 106 (122)
T ss_pred CCCEEEEEeCCeEEEEE
Confidence 59999999998665543
No 57
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.10 E-value=2e-10 Score=82.35 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=59.6
Q ss_pred hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccc--cCCeEEEeeCc
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRK--EYPFIEIFHSP 112 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvt--kmP~Ielw~sp 112 (240)
.-|+|++|.|.++|| +|..|+|.|+++|.+|...+.|++||+++.|.++-.=.+. +.|++=++++.
T Consensus 10 ~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 10 ESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLS 78 (103)
T ss_pred hcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecc
Confidence 338999999999999 9999999999999999888999999999998866555587 99999999985
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.08 E-value=7.2e-10 Score=96.83 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=77.3
Q ss_pred CcceEEecCHHHHHHHhh-cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC---cceEEEEECCCccchhhhcccccCC
Q 026306 30 PSRVIHFTSEREFVHILH-QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP---HVKFMRVECPKYPGFCLTRQRKEYP 104 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~-eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP---dVlFl~VDVDEVP~fcvtRqvtkmP 104 (240)
.+.|..+. .+.|++.+. .+++|+|.|+|+|| +|+.|.|.++++|.+|.. .+.|++||+++-.... -++..+|
T Consensus 345 ~~~v~~l~-~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~P 421 (462)
T TIGR01130 345 EGPVKVLV-GKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEGFP 421 (462)
T ss_pred CCccEEee-CcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccccC
Confidence 34555544 677888764 49999999999999 999999999999999965 6999999998754333 5599999
Q ss_pred eEEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhc
Q 026306 105 FIEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQG 153 (240)
Q Consensus 105 ~Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g 153 (240)
++-+|.+.... +...|.-..+.-.+.+|+++++
T Consensus 422 t~~~~~~~~~~----------------~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 422 TIKFVPAGKKS----------------EPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred EEEEEeCCCCc----------------CceEecCcCCHHHHHHHHHhcC
Confidence 99999764321 1123344455556666666554
No 59
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.07 E-value=3.5e-10 Score=85.20 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=58.9
Q ss_pred CHHHHHHHhhcC-CcEEEEEeecCC-ccccchHHHH---HHHhhhCCcceEEEEECCCcc------------chhhhc-c
Q 026306 38 SEREFVHILHQG-YPVVVAFTIRGN-LTKHLDRVLE---EAAAEFYPHVKFMRVECPKYP------------GFCLTR-Q 99 (240)
Q Consensus 38 SE~qwD~~L~eG-kPVVV~FTAsWC-PcryMkPvFE---ELAAeYyPdVlFl~VDVDEVP------------~fcvtR-q 99 (240)
+-+++.+.+++| +||+|.|+|+|| +|+.|+|.+. +++..+..++.|+.||+|+-+ .....| +
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 457888899999 999999999999 9999999885 566666456889999998742 222233 3
Q ss_pred cccCCeEEEeeC
Q 026306 100 RKEYPFIEIFHS 111 (240)
Q Consensus 100 vtkmP~Ielw~s 111 (240)
+..+|++-++..
T Consensus 82 v~~~Pt~~~~~~ 93 (125)
T cd02951 82 VRFTPTVIFLDP 93 (125)
T ss_pred CccccEEEEEcC
Confidence 899999999975
No 60
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-09 Score=100.55 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=81.8
Q ss_pred eEEecCHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 33 VIHFTSEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+.| ++..|.+.+.+ .+||+|+|+|+|| ||+-|.|.||++|++|.-.+++.+||||+-|.+---=++...|+|=+
T Consensus 25 I~dv-T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 25 IKDV-TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred ceec-hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 5554 56778877766 6799999999999 99999999999999998899999999999998765455999999999
Q ss_pred eeCcccc-ccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchH
Q 026306 109 FHSPEQA-STRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIR 155 (240)
Q Consensus 109 w~speqA-~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~ 155 (240)
|+++..- +-+| ... .=-.|+|+.+++-+
T Consensus 104 f~dGqpVdgF~G-~qP------------------esqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQG-AQP------------------ESQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCC-CCc------------------HHHHHHHHHHhcCh
Confidence 9995443 3333 221 22357778877776
No 61
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.97 E-value=1.1e-09 Score=75.62 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=51.1
Q ss_pred EEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 52 VVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 52 VVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
.|..|+++|| +|+.++|.|+++|++|..++.|++||+++-|...-.-+++.+|++=+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 4778999999 99999999999999997679999999999998876666999999854
No 62
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.96 E-value=3e-09 Score=84.61 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=73.7
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHH-H--HHHHhhhCCcceEEEEECCCccchhh---h----c-ccccCCe
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRV-L--EEAAAEFYPHVKFMRVECPKYPGFCL---T----R-QRKEYPF 105 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPv-F--EELAAeYyPdVlFl~VDVDEVP~fcv---t----R-qvtkmP~ 105 (240)
+++.+.+.-.+||||+|+|+|.|| +|+.|++. | .++++....+..+++||+++.|...- . . ++.-+|+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 456677777889999999999999 99999882 2 25666655788999999999886531 1 0 2567999
Q ss_pred EEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHH
Q 026306 106 IEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKR 151 (240)
Q Consensus 106 Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~ 151 (240)
+=+ -+|++...-+ ..-+|..-+.+.=||+.+|.+
T Consensus 84 ~vf-l~~~G~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVF-LTPDLKPFFG-----------GTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEE-ECCCCCEEee-----------eeecCCCCcCCCcCHHHHHHH
Confidence 854 4556555433 233466666777899999875
No 63
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.90 E-value=2.8e-09 Score=72.51 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=47.9
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+.|+++|| +|..++|.|+++|.++ +++.|..+|+++-|..--.-++...|+|-+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 678999999 9999999999999887 899999999999987544444889999854
No 64
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.88 E-value=5.6e-09 Score=100.07 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=65.4
Q ss_pred cceEEecCHHHHHHHhhc----CCcEEEEEeecCC-ccccchHHH---HHHHhhhCCcceEEEEECCCcc---chhhhc-
Q 026306 31 SRVIHFTSEREFVHILHQ----GYPVVVAFTIRGN-LTKHLDRVL---EEAAAEFYPHVKFMRVECPKYP---GFCLTR- 98 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e----GkPVVV~FTAsWC-PcryMkPvF---EELAAeYyPdVlFl~VDVDEVP---~fcvtR- 98 (240)
.+..+++|.+++++.+++ ||||+|+|+|+|| +|+.|+|.. ++++.++ +++.+++||+++-. +-..+|
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHc
Confidence 357789999999999864 8999999999999 999999975 7888888 78999999998642 223333
Q ss_pred ccccCCeEEEee
Q 026306 99 QRKEYPFIEIFH 110 (240)
Q Consensus 99 qvtkmP~Ielw~ 110 (240)
++..+|++-+|.
T Consensus 531 ~v~g~Pt~~~~~ 542 (571)
T PRK00293 531 NVLGLPTILFFD 542 (571)
T ss_pred CCCCCCEEEEEC
Confidence 499999998885
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.84 E-value=9.2e-09 Score=85.70 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=56.5
Q ss_pred CCcEEEE-EeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 49 GYPVVVA-FTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 49 GkPVVV~-FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
.+||+|. |+|+|| +|+.|+|.++++|.++ +++.|..||+++-|...-.-++..+|++-++.+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 6777766 999999 9999999999999996 99999999999998866555599999999987654
No 66
>PHA02125 thioredoxin-like protein
Probab=98.82 E-value=4.1e-09 Score=75.03 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=41.7
Q ss_pred EEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEE
Q 026306 52 VVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIE 107 (240)
Q Consensus 52 VVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ie 107 (240)
+||.|+|+|| ||+.|+|.|++++ +.|++||+++.+...-.=.+..+|++-
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 4899999999 9999999999875 358999999987654433499999986
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.79 E-value=1.1e-08 Score=85.33 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=52.7
Q ss_pred hhcCCcEEEEEee---cCC-ccccchHHHHHHHhhhCCcce--EEEEECCCccchhhhcccccCCeEEEeeCccc
Q 026306 46 LHQGYPVVVAFTI---RGN-LTKHLDRVLEEAAAEFYPHVK--FMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 46 L~eGkPVVV~FTA---sWC-PcryMkPvFEELAAeYyPdVl--Fl~VDVDEVP~fcvtRqvtkmP~Ielw~speq 114 (240)
++.|..|++ |++ +|| ||+.|.|+++++|++| +++. ++.||.|+.|..+-.=++..+|++-+|++++.
T Consensus 17 ~~~~~~i~~-f~~~~a~wC~~C~~~~p~l~~la~~~-~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 17 LKNPVEIVV-FTDNDKEGCQYCKETEQLLEELSEVS-PKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred cCCCeEEEE-EcCCCCCCCCchHHHHHHHHHHHhhC-CCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee
Confidence 444666555 666 999 9999999999999999 7766 45555558877666556999999999998664
No 68
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.78 E-value=4.6e-08 Score=78.19 Aligned_cols=99 Identities=13% Similarity=0.222 Sum_probs=71.2
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCC---cceEEEEECCCccc-----hhhhcccc--cCCeEE
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYP---HVKFMRVECPKYPG-----FCLTRQRK--EYPFIE 107 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyP---dVlFl~VDVDEVP~-----fcvtRqvt--kmP~Ie 107 (240)
+...|+..+.+...|+|.|.|+|++|.- .|.+++||.+|.. +|.+-+|||+.++. .|-.=.|. .||+|-
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~ 85 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIY 85 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEE
Confidence 5678999999999999999995444432 3999999999853 58999999975444 44433487 899999
Q ss_pred EeeCccccccccCCCCCCceeeeeEeeecccc-ccchhHHHHHHHhc
Q 026306 108 IFHSPEQASTRERGADPNITKYAVKVLPFNYD-LSAYGFREYFKRQG 153 (240)
Q Consensus 108 lw~speqA~~~G~~~d~~itrY~vkv~pfnyd-~S~YGfreffk~~g 153 (240)
+|.+++..+. .+|+=. .++=|+..|+++++
T Consensus 86 lF~~g~~~~~----------------~~Y~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 86 LFHGGDFENP----------------VPYSGADVTVDALQRFLKGNT 116 (116)
T ss_pred EEeCCCcCCC----------------ccCCCCcccHHHHHHHHHhcC
Confidence 9997643221 145552 66666777776653
No 69
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.70 E-value=1.1e-07 Score=84.56 Aligned_cols=110 Identities=20% Similarity=0.320 Sum_probs=81.2
Q ss_pred cceEEecCHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCe
Q 026306 31 SRVIHFTSEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPF 105 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~ 105 (240)
+.|..|++.+.|...+.. +.-|||||+-+.+ -|..|+..|+.||++| |+++|++|...+.| |+.+= ..-.|+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~~~~--~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRASKCP--ASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEECGCC--TTTTS-TTC-SE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehhccC--cccCCcccCCCE
Confidence 689999999999999866 5679999999999 7999999999999999 99999999999987 77776 888999
Q ss_pred EEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhch
Q 026306 106 IEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGI 154 (240)
Q Consensus 106 Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~ 154 (240)
|-+|++++--++.=|+.| . .+-|.+.=-+-.||.++|+
T Consensus 202 llvYk~G~l~~~~V~l~~-----~------~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTD-----L------LGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp EEEEETTEEEEEECTGGG-----C------T-TT--HHHHHHHHHTTTS
T ss_pred EEEEECCEEEEeEEehHH-----h------cCCCCCHHHHHHHHHHcCC
Confidence 999999765555322222 1 1234455557777777776
No 70
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.70 E-value=5e-08 Score=64.84 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=58.3
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC-Cccchhhhcc--cccCCeEEEeeCccc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP-KYPGFCLTRQ--RKEYPFIEIFHSPEQ 114 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD-EVP~fcvtRq--vtkmP~Ielw~speq 114 (240)
+++++|+|.++|| +|+.+.|.|++++.++-..+.|+.+|+. ..+..-.... +..+|.+.++.+++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 8899999889999 9999999999999999336999999997 7877777777 899999998888654
No 71
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.65 E-value=1.3e-08 Score=72.62 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECCCccchhhhcc-cccCCeEEEeeC-ccccccccCCCC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHS-PEQASTRERGAD 123 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~s-peqA~~~G~~~d 123 (240)
|++++|.|+|+|| ||+..-|.|.++..+|. .++.|+.|.+|+-...+.+.. ...+|...+..+ ..+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------ 74 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSEL------ 74 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHH------
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHH------
Confidence 8999999999999 99999999999999995 599999999997755554433 222366654443 333322
Q ss_pred CCceeeeeEeeecc
Q 026306 124 PNITKYAVKVLPFN 137 (240)
Q Consensus 124 ~~itrY~vkv~pfn 137 (240)
..+|.|..+|..
T Consensus 75 --~~~~~i~~iP~~ 86 (95)
T PF13905_consen 75 --LKKYGINGIPTL 86 (95)
T ss_dssp --HHHTT-TSSSEE
T ss_pred --HHHCCCCcCCEE
Confidence 455555555544
No 72
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.65 E-value=2.5e-08 Score=72.72 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=46.6
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEE---ECCCccchhhhcccccCCeE
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRV---ECPKYPGFCLTRQRKEYPFI 106 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~V---DVDEVP~fcvtRqvtkmP~I 106 (240)
+|+||||.|+|+|| +|+.+.|.+++++.+|..++.++-| |.++...++-..+++.+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 59999999999999 9999999999999998667777777 34444444444556668875
No 73
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.63 E-value=5.6e-08 Score=91.25 Aligned_cols=103 Identities=23% Similarity=0.362 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC---Cc--ceEEEEECCCccchhhhcc-cccCCeEEEeeCc
Q 026306 40 REFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PH--VKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHSP 112 (240)
Q Consensus 40 ~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy---Pd--VlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~sp 112 (240)
+-.+.+|.....|-|.|+|.|| .++-|+|.|||+|+.|+ |+ +.+=+||||+= .-.-+|- ++||||+.||.++
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfrnG 82 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFRNG 82 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeeecc
Confidence 4567788889999999999999 99999999999999885 54 55667777765 3344555 9999999999998
Q ss_pred cccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchHHHHHH
Q 026306 113 EQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKY 160 (240)
Q Consensus 113 eqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~ 160 (240)
+-+.. -|.-.-|+=|+-||.++.-=..++++
T Consensus 83 ~~~~r-----------------EYRg~RsVeaL~efi~kq~s~~i~Ef 113 (375)
T KOG0912|consen 83 EMMKR-----------------EYRGQRSVEALIEFIEKQLSDPINEF 113 (375)
T ss_pred chhhh-----------------hhccchhHHHHHHHHHHHhccHHHHH
Confidence 76543 23446688888898887654444443
No 74
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.57 E-value=6.2e-08 Score=72.54 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEEeeCc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHSP 112 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~sp 112 (240)
+|+|+||.|+|+|| +|+.+.|.|++++.++ ++.|+-|+++.-+....+-. ..++|+.-+..|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~ 88 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDP 88 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECC
Confidence 49999999999999 9999999999999998 59999999876655443322 4455655555554
No 75
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.56 E-value=1.1e-07 Score=68.40 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=46.0
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCcccc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQA 115 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speqA 115 (240)
.|.|+|+|| ||..|.|.++++|+++--++.|++|| +.+ -..+.++...|+|-+ |++..
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~-~a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMN-EILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHH-HHHHcCCCcCCEEEE--CCEEE
Confidence 589999999 99999999999999995457887776 332 245556999999999 65444
No 76
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.54 E-value=2.1e-07 Score=82.09 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc----------chhhhcc-cccCCeEEEeeC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP----------GFCLTRQ-RKEYPFIEIFHS 111 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP----------~fcvtRq-vtkmP~Ielw~s 111 (240)
|++++|.|+|+|| ||+.+.|.|+++|.+| ++.++.|++|..+ .-...|- |+..|++=|+..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y--g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY--GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHc--CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 9999999999999 9999999999999999 5777777777632 1123333 788888888876
No 77
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.52 E-value=8.7e-08 Score=78.59 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=69.6
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC--------cceEEEEECCCccchhhhcccccCC----eEEEeeCccc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP--------HVKFMRVECPKYPGFCLTRQRKEYP----FIEIFHSPEQ 114 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP--------dVlFl~VDVDEVP~fcvtRqvtkmP----~Ielw~speq 114 (240)
+|++|+|.|+|+|| ||+..-|.|+++..++.. ++.++-|+.|+=... +.+-+++|+ ++- +.+..+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~-~~~f~~~~~~~~~~~p-~~~~~~ 101 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ-QESFLKDMPKKWLFLP-FEDEFR 101 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHH-HHHHHHHCCCCceeec-ccchHH
Confidence 49999999999999 999999999998877642 488999998864432 112244443 322 223211
Q ss_pred cccccCCCCCCceeeeeEeeecccccc------chhHHHHHHHhchHHHHHH
Q 026306 115 ASTRERGADPNITKYAVKVLPFNYDLS------AYGFREYFKRQGIRHLQKY 160 (240)
Q Consensus 115 A~~~G~~~d~~itrY~vkv~pfnyd~S------~YGfreffk~~g~~~~~~~ 160 (240)
.+. -.+|.|.-+|.++=.. .=+-|+..+++|+...+.+
T Consensus 102 ~~l--------~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~~~w 145 (146)
T cd03008 102 REL--------EAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACFRNW 145 (146)
T ss_pred HHH--------HHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHHHhc
Confidence 111 2356666677776444 3467888999998887765
No 78
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.51 E-value=3.4e-07 Score=81.11 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=78.0
Q ss_pred CCCCcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCe
Q 026306 27 DLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPF 105 (240)
Q Consensus 27 dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~ 105 (240)
..|-++...|.||.+|=+......-||+||.-.-- +|++|+.+||.||..+ ...+|++|++-+.|=++..=+++-.|+
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred HcCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecccCceeeeeeeeeEeee
Confidence 46889999999999999999999999999999987 9999999999999999 999999999999985544444999999
Q ss_pred EEEeeCcc
Q 026306 106 IEIFHSPE 113 (240)
Q Consensus 106 Ielw~spe 113 (240)
|-+|+++.
T Consensus 141 v~l~k~g~ 148 (211)
T KOG1672|consen 141 VALFKNGK 148 (211)
T ss_pred EEEEEcCE
Confidence 99999953
No 79
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.50 E-value=2e-07 Score=71.30 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC---cceEEEEECCCcc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP---HVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP---dVlFl~VDVDEVP 92 (240)
+|++|+|.|+|+|| +|+.+-|.|++++.+|.. ++.++.|.+|+-+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~ 64 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCH
Confidence 49999999999999 999999999999999864 4778888887754
No 80
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.49 E-value=2.6e-07 Score=69.78 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=37.7
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC---cceEEEEECCCc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP---HVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP---dVlFl~VDVDEV 91 (240)
+|++|+|.|+|+|| +|+.+.|.|++++.++.. ++.++-|.+|+-
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 48999999999999 999999999999999853 466777777754
No 81
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.4e-07 Score=82.31 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=102.2
Q ss_pred cccccCCcCCC--CCcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch
Q 026306 18 CKYYTGYPKDL--GPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF 94 (240)
Q Consensus 18 ~kyytgyp~dl--g~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f 94 (240)
+.-+.+.+..+ ..+.+..++...-++..+..+.+++|.|.|+|| +|.-+.|.++++|..++..+.+-.|||++-+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~ 93 (383)
T KOG0191|consen 14 LSSLVEKSLFLYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDL 93 (383)
T ss_pred ccccccchhhhhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHH
Confidence 34444443332 333344444555666667779999999999999 999999999999999988899999999999999
Q ss_pred hhhcccccCCeEEEeeCc-cccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchHHHHHHhhhcccccccccC
Q 026306 95 CLTRQRKEYPFIEIFHSP-EQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSAACTSSAR 173 (240)
Q Consensus 95 cvtRqvtkmP~Ielw~sp-eqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~~~~~~~~~~~~~~ 173 (240)
|-.-.+..+|+|-+|..+ +-....| ..+-.++-.|+......+....+
T Consensus 94 ~~~y~i~gfPtl~~f~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 142 (383)
T KOG0191|consen 94 CEKYGIQGFPTLKVFRPGKKPIDYSG-------------------------------PRNAESLAEFLIKELEPSVKKLV 142 (383)
T ss_pred HHhcCCccCcEEEEEcCCCceeeccC-------------------------------cccHHHHHHHHHHhhcccccccc
Confidence 999999999999999876 1111111 33455666666666666666666
Q ss_pred CC-cccccccCCCcc
Q 026306 174 SP-VQHQTHHDGEKT 187 (240)
Q Consensus 174 ~~-~~~~~~~~~~~~ 187 (240)
-+ +++.+.++-+.+
T Consensus 143 ~~~v~~l~~~~~~~~ 157 (383)
T KOG0191|consen 143 EGEVFELTKDNFDET 157 (383)
T ss_pred CCceEEccccchhhh
Confidence 66 777776665543
No 82
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.38 E-value=5.5e-07 Score=72.49 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=46.9
Q ss_pred hhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEEeeCccc
Q 026306 46 LHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHSPEQ 114 (240)
Q Consensus 46 L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~speq 114 (240)
+.+|++|||.|+|+|| +|+.+.|.+++++.+ ++.++.|++++.+.--.+-. ...+|+.-++.|+.+
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~ 127 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNG 127 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCC
Confidence 3459999999999999 999999999999864 58899999876543211111 234565556666543
No 83
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.36 E-value=4.5e-07 Score=64.98 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=47.2
Q ss_pred HHHhhcCCcEEEEEeecCC-ccccchHHH---HHHHhhhCCcceEEEEECCCccchh-hhcccccCCeEEEe
Q 026306 43 VHILHQGYPVVVAFTIRGN-LTKHLDRVL---EEAAAEFYPHVKFMRVECPKYPGFC-LTRQRKEYPFIEIF 109 (240)
Q Consensus 43 D~~L~eGkPVVV~FTAsWC-PcryMkPvF---EELAAeYyPdVlFl~VDVDEVP~fc-vtRqvtkmP~Ielw 109 (240)
.+...+|+||+|.|+|.|| +|+.|+..+ +++.+-+-.++.++.||+++-..-- ..+ .-+|++=++
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~--~~~P~~~~l 80 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR--QGYPTFFFL 80 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH--CSSSEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC--ccCCEEEEe
Confidence 3333459999999999999 999999888 5666645567899999998765432 222 347776443
No 84
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.31 E-value=1.2e-06 Score=65.66 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=55.2
Q ss_pred CCcE-EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccccc
Q 026306 49 GYPV-VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQAS 116 (240)
Q Consensus 49 GkPV-VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speqA~ 116 (240)
.+|| |..|+++|| +|..+.+.++++|.++ |++.|..||+++.|..--+.++..+|++-+ |++-..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 6775 556778899 9999999999999998 999999999999998888888999999943 644333
No 85
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.22 E-value=1.3e-06 Score=71.44 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=38.0
Q ss_pred hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG 93 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~ 93 (240)
.+|++|||.|+|+|| ||+.+-|.|++++.+ ++.++.|++++-+.
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~ 110 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQ 110 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHH
Confidence 369999999999999 999999999999753 78899998876543
No 86
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.14 E-value=8.4e-06 Score=56.29 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=42.4
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc-cchh
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY-PGFC 95 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV-P~fc 95 (240)
|++++|.|.++|| +|.-..|.|.++..+|. +++.|+.|++|.- +...
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~ 68 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAV 68 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHH
Confidence 8999999999999 99999999999999996 7899999999986 4443
No 87
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.3e-06 Score=81.14 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=71.4
Q ss_pred CcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCC---cceEEEEECCCccchhhhcc-cccCC
Q 026306 30 PSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP---HVKFMRVECPKYPGFCLTRQ-RKEYP 104 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP---dVlFl~VDVDEVP~fcvtRq-vtkmP 104 (240)
++.|+. =+.+.|++.+....-|.|.|.|+|| =|.-|.|-++++|.+-.. .|.-.+||+.+- +-.-+|. |..||
T Consensus 24 ~~~Vl~-Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 24 EEDVLV-LTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEVRGYP 101 (493)
T ss_pred ccceEE-EecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcCCCCC
Confidence 344444 4667899999999999999999999 999999999999999873 799999999999 5555565 99999
Q ss_pred eEEEeeCccc
Q 026306 105 FIEIFHSPEQ 114 (240)
Q Consensus 105 ~Ielw~speq 114 (240)
|+.||+|++.
T Consensus 102 TlkiFrnG~~ 111 (493)
T KOG0190|consen 102 TLKIFRNGRS 111 (493)
T ss_pred eEEEEecCCc
Confidence 9999999774
No 88
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.12 E-value=1.7e-06 Score=83.86 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=38.4
Q ss_pred hcCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECC
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECP 89 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVD 89 (240)
.+|+||||+|+|+|| ||+.+-|.|++++.+|. .++.|+.|.++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~ 98 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASP 98 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecc
Confidence 359999999999999 99999999999999994 46889888764
No 89
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.11 E-value=3.1e-06 Score=69.49 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=37.0
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEV 91 (240)
.+.+.||.|+|+|| ||+...|.|++++.+| ++.++-|++|+-
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--GLPVYAFSLDGQ 91 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc--CCcEEEEEeCCC
Confidence 37888999999999 9999999999999999 577777777763
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.08 E-value=1.4e-05 Score=82.21 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=51.9
Q ss_pred chhhHHHHHHHHHhhcccccCCcCCCCCcceEEecCH-HHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-
Q 026306 3 EHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFTSE-REFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP- 79 (240)
Q Consensus 3 ~~~~~~~m~~~lr~~~kyytgyp~dlg~SrVi~ItSE-~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP- 79 (240)
+.+.+.+|..+|...-+--.|-|...-.....-+..+ -++..-+ +|++|||+|+|+|| ||+.+.|.|++++.+|..
T Consensus 374 ~~~~~~~~~~~i~~~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~l-kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~ 452 (1057)
T PLN02919 374 GEGCVQQFVSYISDLESKKTATKVPEFPPKLDWLNTAPLQFRRDL-KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ 452 (1057)
T ss_pred chhHHHHHHHHHHhhhccccCCcCCCCcccccccCCccccchhhc-CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC
Confidence 3445667766666655444444432222221111111 1111111 59999999999999 999999999999999942
Q ss_pred cceEEEEE
Q 026306 80 HVKFMRVE 87 (240)
Q Consensus 80 dVlFl~VD 87 (240)
++.|+-|-
T Consensus 453 ~~~vvgV~ 460 (1057)
T PLN02919 453 PFTVVGVH 460 (1057)
T ss_pred CeEEEEEe
Confidence 26777774
No 91
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.01 E-value=1.9e-05 Score=47.29 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=50.0
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhh--hcc-cccCCeEEEeeCc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCL--TRQ-RKEYPFIEIFHSP 112 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcv--tRq-vtkmP~Ielw~sp 112 (240)
++.|.++|| +|.-+.+.+++++... +++.+..+|+++.+.... .+. +...|++.++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLN-KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhC-CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 478999999 9999999999994333 899999999999998776 244 8899999988765
No 92
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.1e-05 Score=76.52 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=67.1
Q ss_pred ccccCCcC--CCCCcceEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECC--C
Q 026306 19 KYYTGYPK--DLGPSRVIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECP--K 90 (240)
Q Consensus 19 kyytgyp~--dlg~SrVi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVD--E 90 (240)
.||+-=|- +...+.|..+-. +.||.+.+. +|=|.|.|.|+|| =|+.|+|..||||-+|. ++|.+.++|+. +
T Consensus 352 p~~kSqpiPe~~~~~pVkvvVg-knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd 430 (493)
T KOG0190|consen 352 PHLKSQPIPEDNDRSPVKVVVG-KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND 430 (493)
T ss_pred cccccCCCCcccccCCeEEEee-cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc
Confidence 35555444 444456666654 567777754 9999999999999 69999999999999997 57999999984 5
Q ss_pred ccchhhhcccccCCeEEEeeCcc
Q 026306 91 YPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 91 VP~fcvtRqvtkmP~Ielw~spe 113 (240)
+|.+ .+ .-+|||-+|....
T Consensus 431 ~~~~--~~--~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 431 VPSL--KV--DGFPTILFFPAGH 449 (493)
T ss_pred Cccc--cc--cccceEEEecCCC
Confidence 5543 33 3399999997643
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.95 E-value=2.8e-05 Score=57.39 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.1
Q ss_pred hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEE
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVE 87 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VD 87 (240)
.+|+++||.|+|+|| +|+.+.|.|++++.++ .+..+.+|
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--~~i~i~~~ 57 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--PVVSVALR 57 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhC--CEEEEEcc
Confidence 358999999999999 9999999999999886 55555554
No 94
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=2.4e-05 Score=60.88 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=40.4
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCCcc
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP 92 (240)
+|++++|.|+|+|| +|+...|.|.+++.+|.. .+.++.|++|+-+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 48999999999999 999999999999999943 3899999999764
No 95
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.93 E-value=8.6e-06 Score=62.16 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=41.2
Q ss_pred cCCcEEEEEeec-CC-ccccchHHHHHHHhhhCC-cceEEEEECCCccc
Q 026306 48 QGYPVVVAFTIR-GN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYPG 93 (240)
Q Consensus 48 eGkPVVV~FTAs-WC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP~ 93 (240)
+|+++||.|+|+ || ||+.--|.+++++.+|.. ++.|+-|-.+.-+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 399999999999 99 999999999999999764 49999998888877
No 96
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.89 E-value=8.8e-06 Score=59.38 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=44.8
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHH---HHhhhCCcceEEEEECCCccc-------------------hhhhcc-cccC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEE---AAAEFYPHVKFMRVECPKYPG-------------------FCLTRQ-RKEY 103 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEE---LAAeYyPdVlFl~VDVDEVP~-------------------fcvtRq-vtkm 103 (240)
+|+|+||.|+++|| +|+.|.+.+.+ ++.++..++.++.++++.-.. ....+- +.-.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 48999999999999 99999999985 556665678888888875421 123333 8889
Q ss_pred CeEEEee
Q 026306 104 PFIEIFH 110 (240)
Q Consensus 104 P~Ielw~ 110 (240)
|+|=++.
T Consensus 84 Pt~~~~d 90 (112)
T PF13098_consen 84 PTIVFLD 90 (112)
T ss_dssp SEEEECT
T ss_pred CEEEEEc
Confidence 9998875
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.83 E-value=2.6e-05 Score=59.08 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVD 89 (240)
+|++|||.|+|+|| +|+..-|.|++++.+|. .++.++-|..+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~ 65 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSP 65 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccC
Confidence 59999999999999 99999999999999996 35788888764
No 98
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.82 E-value=3.4e-05 Score=51.00 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=41.7
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-cccCCeEEEe
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-RKEYPFIEIF 109 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-vtkmP~Ielw 109 (240)
|.-|+++|| +|+.+++.|++. ++.|..||+++-|.. ...+. +...|++.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 678999999 999999999873 678899999987763 33444 8899999985
No 99
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.77 E-value=0.00011 Score=55.32 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=48.0
Q ss_pred hcCCcEEEEEeecCC-ccccchHH-H--HHHHhhhCCcceEEEEECCCccchhhhcc--cccCCeEEEee
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRV-L--EEAAAEFYPHVKFMRVECPKYPGFCLTRQ--RKEYPFIEIFH 110 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPv-F--EELAAeYyPdVlFl~VDVDEVP~fcvtRq--vtkmP~Ielw~ 110 (240)
+++||++|.|+++|| +|..|+.. | +++.+....+..++.+|+++-.+.=+.+. +..+|++=+..
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 449999999999999 99998763 3 34444444467899999986444434444 88999998884
No 100
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.77 E-value=3.7e-05 Score=60.43 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=37.8
Q ss_pred cCCcEEEEEeecCCccccchHHHHHHHhhhC-CcceEEEEECCC
Q 026306 48 QGYPVVVAFTIRGNLTKHLDRVLEEAAAEFY-PHVKFMRVECPK 90 (240)
Q Consensus 48 eGkPVVV~FTAsWCPcryMkPvFEELAAeYy-PdVlFl~VDVDE 90 (240)
.|++|||.|+|+||||+---|.|++++.+|. .++.|+-|.+|.
T Consensus 21 ~Gk~vvl~fwatwC~C~~e~p~l~~l~~~~~~~~~~vv~v~~~~ 64 (152)
T cd00340 21 KGKVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCNQ 64 (152)
T ss_pred CCCEEEEEEEcCCCCchHHHHHHHHHHHHhcCCCEEEEEeccCc
Confidence 3999999999999999888899999999996 358898887754
No 101
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.64 E-value=6.9e-05 Score=60.58 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=48.7
Q ss_pred cCCcEEEEEeecC-C-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cc--cCCeEEEeeCc
Q 026306 48 QGYPVVVAFTIRG-N-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RK--EYPFIEIFHSP 112 (240)
Q Consensus 48 eGkPVVV~FTAsW-C-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vt--kmP~Ielw~sp 112 (240)
+|++|||.|+|+| | ||..--|.|++++.+| .++.++-|.+|.... . ++ .. .++.+.++.|+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-~~~~vv~vs~D~~~~--~-~~f~~~~~~~~~~~lsD~ 108 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-DNTVVLCISADLPFA--Q-KRFCGAEGLENVITLSDF 108 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-CCcEEEEEeCCCHHH--H-HHHHHhCCCCCceEeecC
Confidence 4999999999999 7 8999999999999999 799999999986422 2 22 33 34557788884
No 102
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.63 E-value=0.00011 Score=72.77 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=64.4
Q ss_pred Ccce-EEecCHHHHHHHhhcCC--cEEEEEeecCC-ccccchHHHH---HHHhhhCCcceEEEEECCCccc---hhhhc-
Q 026306 30 PSRV-IHFTSEREFVHILHQGY--PVVVAFTIRGN-LTKHLDRVLE---EAAAEFYPHVKFMRVECPKYPG---FCLTR- 98 (240)
Q Consensus 30 ~SrV-i~ItSE~qwD~~L~eGk--PVVV~FTAsWC-PcryMkPvFE---ELAAeYyPdVlFl~VDVDEVP~---fcvtR- 98 (240)
.++. ..+.++++.|+.+.|++ ||.|||||.|| -|+-+++..= +.+.+. +|+..+++||-+--. ...+|
T Consensus 452 ~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 452 HGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred cchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHc
Confidence 3344 67888889999999965 99999999999 9999998753 555666 899999999965432 24554
Q ss_pred ccccCCeEEEeeC
Q 026306 99 QRKEYPFIEIFHS 111 (240)
Q Consensus 99 qvtkmP~Ielw~s 111 (240)
++---|+|..|..
T Consensus 531 ~~~G~P~~~ff~~ 543 (569)
T COG4232 531 GVFGVPTYLFFGP 543 (569)
T ss_pred CCCCCCEEEEECC
Confidence 4999999988874
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.59 E-value=7.4e-05 Score=62.81 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=37.6
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVD 89 (240)
.|++|||.|+|+|| ||+---|.|++++.+|.. ++.++-|.+|
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 59999999999999 999888999999999964 4889999775
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.57 E-value=0.00011 Score=57.77 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=37.6
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVD 89 (240)
+|++|||.|+|+|| ||+---|.|++++.+|.. ++.|+-|.++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~ 64 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCN 64 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEecc
Confidence 49999999999999 999999999999999963 6899988874
No 105
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4.6e-05 Score=68.29 Aligned_cols=85 Identities=18% Similarity=0.334 Sum_probs=73.9
Q ss_pred ceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEee
Q 026306 32 RVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~ 110 (240)
+|.-+.+.++| +.+.++++|++|.|.|+ +|..|+-+++++|..+ +++.|++.|-++.|..|-.=++.--|....++
T Consensus 2 ~v~~i~~~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 2 TVQFIVFQEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred CceeehhHHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 57788899999 44559999999999999 9999999999999999 99999999999999999998888889888886
Q ss_pred C-cccccccc
Q 026306 111 S-PEQASTRE 119 (240)
Q Consensus 111 s-peqA~~~G 119 (240)
. .+-+.+.|
T Consensus 79 ~~~~v~~l~~ 88 (227)
T KOG0911|consen 79 LGEKVDRLSG 88 (227)
T ss_pred cchhhhhhhc
Confidence 6 44344444
No 106
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.53 E-value=9.9e-05 Score=64.99 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=37.9
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVD 89 (240)
+|++|||.|+|+|| ||+..-|.|++++.+|.. ++.++-|.+|
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 49999999999999 999999999999999963 4889888875
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.46 E-value=0.00011 Score=60.53 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=33.1
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
+|+|+||.|+|+|| +|+.+-|.++++..++ ++.++-|..+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~ 113 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDG 113 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCC
Confidence 59999999999999 9999999999999887 4445555433
No 108
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.46 E-value=0.00021 Score=54.53 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=39.3
Q ss_pred cCCcEEEEEeecC-C-ccccchHHHHHHHhhhCCcceEEEEECCCc
Q 026306 48 QGYPVVVAFTIRG-N-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FTAsW-C-PcryMkPvFEELAAeYyPdVlFl~VDVDEV 91 (240)
.|+++|+.|+++| | +|+.--|.|++++.+| +++.|+.|.+|..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~~~vi~Is~d~~ 69 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-DNTVVLTISADLP 69 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEECCCH
Confidence 4899999999998 5 7999999999999998 8999999999873
No 109
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.44 E-value=0.00019 Score=49.73 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=38.8
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc----hhhhcc-cccCCeE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG----FCLTRQ-RKEYPFI 106 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~----fcvtRq-vtkmP~I 106 (240)
|+.|+++|| +|..++++|+++..+ +...++.||.++-+. .+..+. +..+|.|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v 58 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI 58 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 688999999 999999999999843 246788888776543 244433 5678887
No 110
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.43 E-value=7e-05 Score=61.35 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=35.2
Q ss_pred cCCcEE-EEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECC
Q 026306 48 QGYPVV-VAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECP 89 (240)
Q Consensus 48 eGkPVV-V~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVD 89 (240)
.|++|| +.++|+|| ||+.--|.|++++.+|.. ++.++-|.||
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 489765 45579999 999999999999999963 5899999875
No 111
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.43 E-value=0.00018 Score=48.93 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhc--ccccCCeEEEeeCc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTR--QRKEYPFIEIFHSP 112 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtR--qvtkmP~Ielw~sp 112 (240)
|+.|+++|| +|+.++++|+++..+| -.||+++-+.. .... .+...|+| ++.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~------~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY------EWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce------EEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC
Confidence 678999999 9999999999997776 36888866543 2222 36788998 45554
No 112
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.43 E-value=0.0013 Score=54.15 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHhhcccccCCcCCCCCcceEEecCHHHHHHHhhcCCcEEEEEeec----CCccccchHHHHHHHhh
Q 026306 1 MEEHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIR----GNLTKHLDRVLEEAAAE 76 (240)
Q Consensus 1 m~~~~~~~~m~~~lr~~~kyytgyp~dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAs----WCPcryMkPvFEELAAe 76 (240)
|.+..-|.-+|..|-. + |||.=. +.+.+..+..+. ..|.|-+. +--+-=..=+|+|||.+
T Consensus 1 ~~~~~~~~~l~~rl~~--~---g~~~~~----------~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e 64 (132)
T PRK11509 1 MSNDTPFDALWQRMLA--R---GWTPVS----------ESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLRE 64 (132)
T ss_pred CCCCCccHHHHHHHHH--c---CCCccc----------cccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHH
Confidence 4444445555655554 1 887532 234444455544 44455443 11334456789999999
Q ss_pred hCC--cceEEEEECCCccchhhhcccccCCeEEEeeCccccccccCCCC
Q 026306 77 FYP--HVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQASTRERGAD 123 (240)
Q Consensus 77 YyP--dVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speqA~~~G~~~d 123 (240)
| + +++|++||+|+-|...-.=+|..+|++=+|++++....+-|+.+
T Consensus 65 ~-~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 65 F-PDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred h-cCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCC
Confidence 9 5 49999999999988877667999999999999988877655544
No 113
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.41 E-value=0.00015 Score=62.12 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=33.9
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP 92 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP 92 (240)
||.|+|+|| ||+...|.|++++.+| .+.++-|.+|+=+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~ 111 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQG 111 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCC
Confidence 667999999 9999999999999999 6888888888553
No 114
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.34 E-value=0.00028 Score=53.12 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=39.0
Q ss_pred cCCcEEEEEeecCC-c-cccchHHHHHHHhhhCCc----ceEEEEECCCc
Q 026306 48 QGYPVVVAFTIRGN-L-TKHLDRVLEEAAAEFYPH----VKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FTAsWC-P-cryMkPvFEELAAeYyPd----VlFl~VDVDEV 91 (240)
+|+++||.|+++|| + |...-|.|++++.+|..+ +.++-|-.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 58999999999999 7 999999999999999653 89999988753
No 115
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.34 E-value=0.00084 Score=55.03 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHh----hcCCcEEEEEeecCC-ccccchHHH------HHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEe
Q 026306 41 EFVHIL----HQGYPVVVAFTIRGN-LTKHLDRVL------EEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIF 109 (240)
Q Consensus 41 qwD~~L----~eGkPVVV~FTAsWC-PcryMkPvF------EELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw 109 (240)
+|++.| .+||||.|.|.+.|| +|+.|+..+ .+++.+ +...+.+|+|.--...- +...-+|+|=++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~-~~g~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLS-PDGQYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcC-ccCcccCeEEEE
Confidence 566666 449999999999999 999998753 444433 23444777652211111 122468999666
Q ss_pred e
Q 026306 110 H 110 (240)
Q Consensus 110 ~ 110 (240)
.
T Consensus 87 d 87 (130)
T cd02960 87 D 87 (130)
T ss_pred C
Confidence 3
No 116
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00054 Score=62.62 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=79.2
Q ss_pred cCCCCCcceEEecCHHHHHHHhhc--CCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccchh----h
Q 026306 25 PKDLGPSRVIHFTSEREFVHILHQ--GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFC----L 96 (240)
Q Consensus 25 p~dlg~SrVi~ItSE~qwD~~L~e--GkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fc----v 96 (240)
|...|+..+.-++.-+.+|+.|.- ..--+|.|.|.|. .|+...|+|.||+.+|- ++.+|=+||+-..|..- |
T Consensus 118 P~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 118 PAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred cccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheee
Confidence 667799999999999999999966 6778999999999 99999999999999997 77999999999988753 2
Q ss_pred hcc--cccCCeEEEeeCcccccc
Q 026306 97 TRQ--RKEYPFIEIFHSPEQAST 117 (240)
Q Consensus 97 tRq--vtkmP~Ielw~speqA~~ 117 (240)
+=. -...||+=||++++.+..
T Consensus 198 s~s~~srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEVSR 220 (265)
T ss_pred ccCcccccCCeEEEEccchhhhc
Confidence 212 456899999999776654
No 117
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00055 Score=61.88 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred HHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhC--CcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 39 EREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY--PHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 39 E~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYy--PdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
++.|+....+ ..+.+|.|.|+|| .|+-|.|-++++|.++. ..+....+|++--+..|-.=++..+|+|++|...+
T Consensus 151 ~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 151 KDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred ccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCC
Confidence 3444444433 8899999999999 89999999999999884 78999999999444444444499999999998743
No 118
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.18 E-value=0.00086 Score=50.21 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=38.4
Q ss_pred cCCcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 48 QGYPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
.|+++||.|+ +.|| +|...-|.|.+++.+|- .++.|+.|-+|..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 5999999999 6699 89999999999999983 5799999998853
No 119
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.15 E-value=0.0006 Score=49.89 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=41.0
Q ss_pred cCCcEEEEEeec-CC-ccccchHHHHHHHhhhCC-cceEEEEECCCcc
Q 026306 48 QGYPVVVAFTIR-GN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV~FTAs-WC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEVP 92 (240)
+|+|+||.|+++ || +|..--|.|+++..+|.. ++.|+-|..|..-
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc
Confidence 599999999999 99 999999999999999942 6999999998875
No 120
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.10 E-value=0.00089 Score=57.38 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceE------EEEECCC----ccch---hhhcccccCCeEEEeeCccc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKF------MRVECPK----YPGF---CLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlF------l~VDVDE----VP~f---cvtRqvtkmP~Ielw~speq 114 (240)
||..||.|.|+|| ||+.=.|.+++|+++ ++.+ .-|+.|+ +-.| -+++...++|.-.+..|+++
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 9999999999999 999999999999864 2344 5567776 3233 23444678998889998755
Q ss_pred c
Q 026306 115 A 115 (240)
Q Consensus 115 A 115 (240)
.
T Consensus 136 ~ 136 (184)
T TIGR01626 136 A 136 (184)
T ss_pred h
Confidence 3
No 121
>PLN02412 probable glutathione peroxidase
Probab=97.08 E-value=0.00064 Score=55.12 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=37.2
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPK 90 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDE 90 (240)
.|++|||.|+|+|| +|+---|.|.++..+|.. ++.++-|-+|.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~ 72 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQ 72 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccc
Confidence 48999999999999 888778999999999963 48899887753
No 122
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.07 E-value=0.00085 Score=56.77 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPK 90 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDE 90 (240)
|++|+|.|+|+|| +|.. -|.|++|..+|.. ++.++-|-||.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nq 67 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQ 67 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccc
Confidence 9999999999999 8875 5699999999963 58889998863
No 123
>smart00594 UAS UAS domain.
Probab=97.05 E-value=0.0023 Score=49.48 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=52.4
Q ss_pred HHHHHHh----hcCCcEEEEEeecCC-ccccchH------HHHHHHhhhCCcceEEEEECCCccchhhhcc--cccCCeE
Q 026306 40 REFVHIL----HQGYPVVVAFTIRGN-LTKHLDR------VLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ--RKEYPFI 106 (240)
Q Consensus 40 ~qwD~~L----~eGkPVVV~FTAsWC-PcryMkP------vFEELAAeYyPdVlFl~VDVDEVP~fcvtRq--vtkmP~I 106 (240)
.+|++.+ .++|+++|.|.+.|| +|..|+. -+.++-. .+..++.+|++.-.+.=+..+ ++.+|+|
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~---~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR---ENFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH---cCEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 3555555 449999999999999 9977654 3444443 368899999998888766666 8899999
Q ss_pred EEeeC
Q 026306 107 EIFHS 111 (240)
Q Consensus 107 elw~s 111 (240)
=+...
T Consensus 91 ~~l~~ 95 (122)
T smart00594 91 AIVDP 95 (122)
T ss_pred EEEec
Confidence 99854
No 124
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.04 E-value=0.0013 Score=49.34 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=45.6
Q ss_pred CCcEEEEE-eecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhcccccCCeEEEeeCccc
Q 026306 49 GYPVVVAF-TIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 49 GkPVVV~F-TAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speq 114 (240)
++++||.| .++|| +|+---|.|.+++.+|. .++.++-|..|.-....--++...+| ..+..|+++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~-~p~~~D~~~ 90 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLP-FPVYADPDR 90 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCC-CeEEECCch
Confidence 56666666 59999 99988999999999995 46999999988765443112233333 346666553
No 125
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.01 E-value=0.001 Score=52.83 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=39.9
Q ss_pred hcCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 47 HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 47 ~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
..|+++||.|.++|| .|...-|.|.+|+.+|. .++.|+.|.+|..
T Consensus 23 ~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~ 69 (171)
T cd02969 23 ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDI 69 (171)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 368999999999999 88888999999999994 3799999999864
No 126
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.91 E-value=0.0019 Score=48.50 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=36.9
Q ss_pred cCCcEEEEEee-cCC-ccccchHHHHHHHhhhC-CcceEEEEECCC
Q 026306 48 QGYPVVVAFTI-RGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPK 90 (240)
Q Consensus 48 eGkPVVV~FTA-sWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDE 90 (240)
.|+++||.|++ .|| +|...-|.|.+++.+|. .++.++.|-+|.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 39999999995 689 79999999999999995 358888888875
No 127
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.84 E-value=0.0017 Score=46.76 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=36.5
Q ss_pred EEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc
Q 026306 52 VVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP 92 (240)
Q Consensus 52 VVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP 92 (240)
-|+.|+.+|| +|+-.+++|++++.++ .++.|..+|+++-+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~ 42 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEG 42 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCCh
Confidence 4788999999 9999999999999987 89999999999754
No 128
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.80 E-value=0.0016 Score=45.16 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=38.9
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhh----hcc-cccCCeEEEeeCcc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCL----TRQ-RKEYPFIEIFHSPE 113 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcv----tRq-vtkmP~Ielw~spe 113 (240)
|+.|+++|| +|..+++.|+++..+| .++.||.+.-..-+. .+. +..+|.| |-+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP----AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc----EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 588999999 9999999999999876 577777776532221 221 4567765 65543
No 129
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.75 E-value=0.0012 Score=56.44 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=30.0
Q ss_pred cCCcEEEEEeecCC-ccccc----hHHHHHHHhhhCC-cceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHL----DRVLEEAAAEFYP-HVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryM----kPvFEELAAeYyP-dVlFl~VDVD 89 (240)
+||-|++-|+|.|| |||.+ ++++|++.++..| .|.|+.=|=+
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 39999999999999 99865 5567788888420 4444444433
No 130
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.62 E-value=0.0028 Score=48.24 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=37.3
Q ss_pred C-CcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 49 G-YPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 49 G-kPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
| +++||.|. |+|| +|..--|.|++++.+|. .++.++-|.+|..
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 6 89888887 9999 99999999999999994 3699999998863
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.61 E-value=0.003 Score=50.69 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=39.4
Q ss_pred cCCcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 48 QGYPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
+|++|||.|+ ++|| +|..--|.|++++.+|. .++.++.|.+|..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 4899999999 8999 99999999999999996 4699999999865
No 132
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.57 E-value=0.0046 Score=40.83 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=37.8
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc---hhhhcc-cccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG---FCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~---fcvtRq-vtkmP~Iel 108 (240)
|+.|+++|| +|+-+++.|++. ++.|..+|+++-+. .....+ +...|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 678999999 999999999884 56667888887543 233333 688999976
No 133
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.44 E-value=0.0052 Score=40.16 Aligned_cols=49 Identities=20% Similarity=0.183 Sum_probs=36.3
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc---hhhhcc-cccCCeEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG---FCLTRQ-RKEYPFIE 107 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~---fcvtRq-vtkmP~Ie 107 (240)
|+.|+++|| +|+.+++.|++.. +.|..+|+++-+. .+.++. ....|.|-
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 678999999 9999999999886 5667899988764 233222 45667663
No 134
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.44 E-value=0.0089 Score=50.24 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=60.5
Q ss_pred EecCHHHHHHHh--hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCe-EEEee
Q 026306 35 HFTSEREFVHIL--HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPF-IEIFH 110 (240)
Q Consensus 35 ~ItSE~qwD~~L--~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~-Ielw~ 110 (240)
+.+|.-+-|+.+ ++.+.|||.|-=.|. -|-+|+-.|.++|.+-..-+.++.||.++||.|..-=... -|+ |=.|.
T Consensus 4 ~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~ 82 (133)
T PF02966_consen 4 HLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFF 82 (133)
T ss_dssp EE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEE
T ss_pred ccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEe
Confidence 567888889888 338999999999999 9999999999999999888999999999999986544444 454 33343
Q ss_pred Ccc
Q 026306 111 SPE 113 (240)
Q Consensus 111 spe 113 (240)
+.+
T Consensus 83 rnk 85 (133)
T PF02966_consen 83 RNK 85 (133)
T ss_dssp TTE
T ss_pred cCe
Confidence 443
No 135
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.42 E-value=0.0044 Score=48.14 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=37.8
Q ss_pred cCCcEEEEEeec-CC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 48 QGYPVVVAFTIR-GN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV~FTAs-WC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
.|+++||.|+++ || .|+..-+.|++++.+|. .++.|+.|..|..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 589999999998 56 59999999999999996 4599999998853
No 136
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.27 E-value=0.017 Score=41.35 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
|..|+|.+++...+....++||.|..+++. -+...|+++|..+..++.|.-+.-.++... ...+-|.|-||++.
T Consensus 1 ~~~i~s~~~l~~~~~~~~~~vvg~f~~~~~--~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~----~~~~~~~i~l~~~~ 74 (97)
T cd02981 1 VKELTSKEELEKFLDKDDVVVVGFFKDEES--EEYKTFEKVAESLRDDYGFGHTSDKEVAKK----LKVKPGSVVLFKPF 74 (97)
T ss_pred CeecCCHHHHHHHhccCCeEEEEEECCCCc--HHHHHHHHHHHhcccCCeEEEEChHHHHHH----cCCCCCceEEeCCc
Confidence 357889999999998999999999999883 377899999999977899988875554333 23456999999874
No 137
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.21 E-value=0.011 Score=45.11 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=56.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-------cccCCeEEEeeCccccccccCCCCC
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-------RKEYPFIEIFHSPEQASTRERGADP 124 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-------vtkmP~Ielw~speqA~~~G~~~d~ 124 (240)
|+.|+.+|| +|+.++..|+++..+| -.||+|+-|..--.|+ ....|.| |-+. ..+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~------~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g---~~i------ 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP------AVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG---KLV------ 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC------EEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC---EEE------
Confidence 667999999 9999999999875554 5788888877532222 4566765 4332 223
Q ss_pred CceeeeeEeeeccccccchhHHHHHHHhchHHHHHHhhhccc
Q 026306 125 NITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSA 166 (240)
Q Consensus 125 ~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~~~~~~~ 166 (240)
-||.+..+-+.--.|++.|+..+|
T Consensus 73 ------------------GG~ddl~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 73 ------------------GGLENVMALHISGSLVPMLKQAGA 96 (99)
T ss_pred ------------------cCHHHHHHHHHcCCHHHHHHHhCc
Confidence 478888888877788888876543
No 138
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.18 E-value=0.013 Score=53.25 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=64.4
Q ss_pred cceEEecCHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch-hhhcc-cccCC
Q 026306 31 SRVIHFTSEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF-CLTRQ-RKEYP 104 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f-cvtRq-vtkmP 104 (240)
+.|.+| |..++++-+.+ |--||||..+.+- -|..|...|++||.+| |.++|+++ |+. ||.-- -.-+|
T Consensus 91 G~V~~I-Sg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki-----~at~cIpNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPI-SGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKI-----PATTCIPNYPESNLP 163 (240)
T ss_pred cceeec-cchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEec-----ccccccCCCcccCCC
Confidence 568887 56677777755 8899999999998 8999999999999999 99999986 333 55444 56789
Q ss_pred eEEEeeCc-ccccccc
Q 026306 105 FIEIFHSP-EQASTRE 119 (240)
Q Consensus 105 ~Ielw~sp-eqA~~~G 119 (240)
||=||+-+ -++.-+|
T Consensus 164 Tl~VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIG 179 (240)
T ss_pred eEEEeecchHHhheeh
Confidence 99999983 3333444
No 139
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.12 E-value=0.071 Score=44.06 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=72.5
Q ss_pred cCCcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccc---hhhhc-ccccCCeEEEeeCccccc-ccc
Q 026306 48 QGYPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPG---FCLTR-QRKEYPFIEIFHSPEQAS-TRE 119 (240)
Q Consensus 48 eGkPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~---fcvtR-qvtkmP~Ielw~speqA~-~~G 119 (240)
.|++|||.|+ |+|| +|..--|.|.++..+|. .++.++-|-+|.... ++-+. ....+|+ .+..|+..+- ..-
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~f-pllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITY-PMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcce-eEEECCccHHHHHh
Confidence 4999999999 9999 99888899999999995 478899999887532 12221 1334553 4667765332 223
Q ss_pred CCCCC-----CceeeeeE---eeeccc---cccchhHHHHHHHhchHHHHHHhhhcccccccccCCC
Q 026306 120 RGADP-----NITKYAVK---VLPFNY---DLSAYGFREYFKRQGIRHLQKYLKTNSAACTSSARSP 175 (240)
Q Consensus 120 ~~~d~-----~itrY~vk---v~pfny---d~S~YGfreffk~~g~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
||.++ ..+-|-+. ++.+-+ +...-...|.++. ++++|--.|++.--|-.+.++-
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~--l~~~~~~~~~~~~~~~~~~~~~ 173 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRK--IKAAQYVAAHPGEVCPAKWKEG 173 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH--HHHhhhHHhcCCeeeCCCCCcC
Confidence 44432 11223221 011111 1111256677754 5666665555466665555543
No 140
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.05 E-value=0.017 Score=46.83 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred ecCHHHHHHHhhc----CCcEEEEEeec-------CC-ccccchHHHHHHHhhhCCcceEEEEECCCccc----hhhhcc
Q 026306 36 FTSEREFVHILHQ----GYPVVVAFTIR-------GN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG----FCLTRQ 99 (240)
Q Consensus 36 ItSE~qwD~~L~e----GkPVVV~FTAs-------WC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~----fcvtRq 99 (240)
|..-++|.+.+++ |+++.|-|+++ || .|+.-.|.+++.-++--.+..|+.|.|-.-|. -+.=|+
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4456778888854 89999999975 99 99999999999888863479999999955443 122232
Q ss_pred -----cccCCeEEEeeCc
Q 026306 100 -----RKEYPFIEIFHSP 112 (240)
Q Consensus 100 -----vtkmP~Ielw~sp 112 (240)
++..||+=-|..+
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 7889999888775
No 141
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.017 Score=48.54 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=49.5
Q ss_pred cCHHHHHHHhhc---CCcEEEEEee--------cCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc
Q 026306 37 TSEREFVHILHQ---GYPVVVAFTI--------RGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG 93 (240)
Q Consensus 37 tSE~qwD~~L~e---GkPVVV~FTA--------sWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~ 93 (240)
.-.++|.+.+.+ |+-|.|.|+| ||| .|+.-.|++++.-.+.-.++.|+.|+|-+-|.
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence 457888888865 7889999998 499 89999999999999886789999999988764
No 142
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.04 E-value=0.019 Score=52.84 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=70.5
Q ss_pred cceEEecCHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc--cccCC
Q 026306 31 SRVIHFTSEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ--RKEYP 104 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq--vtkmP 104 (240)
++|+.+++-++|-..+.. ...||||-.-..- -|.+|+.-+-=|||+| |-++|++|.-...- ..|+ ..-.|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g---as~~F~~n~lP 213 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG---ASDRFSLNVLP 213 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc---chhhhcccCCc
Confidence 589999999999999965 6788999999988 8999999999999999 99999999877663 2444 66789
Q ss_pred eEEEeeCcccccc
Q 026306 105 FIEIFHSPEQAST 117 (240)
Q Consensus 105 ~Ielw~speqA~~ 117 (240)
+.+||+.++--.|
T Consensus 214 ~LliYkgGeLIgN 226 (273)
T KOG3171|consen 214 TLLIYKGGELIGN 226 (273)
T ss_pred eEEEeeCCchhHH
Confidence 9999998765444
No 143
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.01 E-value=0.027 Score=47.95 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=73.7
Q ss_pred EecCHHHHHHHhh--cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 35 HFTSEREFVHILH--QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 35 ~ItSE~qwD~~L~--eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
+.+|..+-|+.+. +.+.|||.|--+|. -|..|+-.|++.|..--.-+..+-||+|+||-+-=-=..+..|+|=.|.+
T Consensus 7 ~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 7 TLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFN 86 (142)
T ss_pred ccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEc
Confidence 4578888888883 38999999999999 89999999999999886669999999999998865555888899999988
Q ss_pred ccccccccCCCCC
Q 026306 112 PEQASTRERGADP 124 (240)
Q Consensus 112 peqA~~~G~~~d~ 124 (240)
.++--.-=|-.|-
T Consensus 87 ~kHmkiD~gtgdn 99 (142)
T KOG3414|consen 87 NKHMKIDLGTGDN 99 (142)
T ss_pred CceEEEeeCCCCC
Confidence 7765554444443
No 144
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.86 E-value=0.035 Score=43.12 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=53.6
Q ss_pred HHHHHhhcCCc-EEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccc--cCCeEEEeeCc
Q 026306 41 EFVHILHQGYP-VVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRK--EYPFIEIFHSP 112 (240)
Q Consensus 41 qwD~~L~eGkP-VVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvt--kmP~Ielw~sp 112 (240)
.+..+...+.| +|+.|.-.-. -...+...|+++|.++.-.+.|+.||++..+..+-.=+++ +.|.|-|+...
T Consensus 86 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~ 161 (184)
T PF13848_consen 86 NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSN 161 (184)
T ss_dssp HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETT
T ss_pred hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECC
Confidence 45555566777 4445533334 5688889999999999888999999999888865544455 89999999853
No 145
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.79 E-value=0.01 Score=43.58 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.2
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE 90 (240)
|+.|+.+|| +|...+-.|+++..++ +++.|-.+|+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~ 39 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHA 39 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCC
Confidence 788999999 9999999999999998 889999999985
No 146
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.21 E-value=0.12 Score=41.38 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=62.0
Q ss_pred cceEEecCHHHHHHHhhcCCcEEEEEeec--CC--cc-ccchHHHHHHHhhhCCc-ceEEEEECCCccchhhhcc--cc-
Q 026306 31 SRVIHFTSEREFVHILHQGYPVVVAFTIR--GN--LT-KHLDRVLEEAAAEFYPH-VKFMRVECPKYPGFCLTRQ--RK- 101 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~eGkPVVV~FTAs--WC--Pc-ryMkPvFEELAAeYyPd-VlFl~VDVDEVP~fcvtRq--vt- 101 (240)
.+|+.++|++.+++.=.++..=||.|.=. =| .+ ..+...|+++|.+|.-+ +.|++||.++.+. +.++ ++
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCc
Confidence 48999999999988776666667777432 12 22 67889999999999988 9999999999988 5555 54
Q ss_pred -cCCeEEEeeC
Q 026306 102 -EYPFIEIFHS 111 (240)
Q Consensus 102 -kmP~Ielw~s 111 (240)
++|++-++..
T Consensus 80 ~~~P~v~i~~~ 90 (130)
T cd02983 80 FGYPAMVAINF 90 (130)
T ss_pred cCCCEEEEEec
Confidence 4898887765
No 147
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=95.16 E-value=0.019 Score=55.36 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=62.3
Q ss_pred HHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhC---CcceEEEEECCCccchhhhcccccCCeEEEeeCcc
Q 026306 41 EFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY---PHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPE 113 (240)
Q Consensus 41 qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYy---PdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~spe 113 (240)
..+..+.+ .-.-.|+|.|+|| -|+-|.|+-.|..-+.. --|+.=+.|+-.+|..--+=.+.-||+|.+|+...
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 34444433 4567899999999 99999999999988884 22788889999999987777799999999999754
Q ss_pred cccccc
Q 026306 114 QASTRE 119 (240)
Q Consensus 114 qA~~~G 119 (240)
--.-.|
T Consensus 112 a~dYRG 117 (468)
T KOG4277|consen 112 AIDYRG 117 (468)
T ss_pred eeecCC
Confidence 444444
No 148
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.00 E-value=0.014 Score=39.35 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.7
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc---chhhhc-ccccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP---GFCLTR-QRKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP---~fcvtR-qvtkmP~Iel 108 (240)
|+.|+.+|| +|...+..|++.. +.|-.+||++-+ ..+.++ .....|.|.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 688999999 9999999997654 556777777765 335554 4788898865
No 149
>PHA03050 glutaredoxin; Provisional
Probab=94.83 E-value=0.03 Score=43.73 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=61.0
Q ss_pred HHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc------hhhhcc-cccCCeEEEeeCc
Q 026306 41 EFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG------FCLTRQ-RKEYPFIEIFHSP 112 (240)
Q Consensus 41 qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~------fcvtRq-vtkmP~Ielw~sp 112 (240)
+|.+.+-.+.+ |+.|+.+|| +|...+..|+++..++ + .|-.+|+++.+. .+..+. ....|.| |-+
T Consensus 4 ~~v~~~i~~~~-V~vys~~~CPyC~~ak~~L~~~~i~~-~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~- 76 (108)
T PHA03050 4 EFVQQRLANNK-VTIFVKFTCPFCRNALDILNKFSFKR-G--AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFG- 76 (108)
T ss_pred HHHHHHhccCC-EEEEECCCChHHHHHHHHHHHcCCCc-C--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EEC-
Confidence 45555544444 778999999 9999999999987765 3 356677775321 233332 4455655 333
Q ss_pred cccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchHHHHHHhhhccc
Q 026306 113 EQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSA 166 (240)
Q Consensus 113 eqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~~~~~~~ 166 (240)
+...-||.+..+-|.=..|+..|+...+
T Consensus 77 --------------------------g~~iGG~ddl~~l~~~g~L~~~l~~~~~ 104 (108)
T PHA03050 77 --------------------------KTSIGGYSDLLEIDNMDALGDILSSIGV 104 (108)
T ss_pred --------------------------CEEEeChHHHHHHHHcCCHHHHHHHccc
Confidence 2233588888887777788888876543
No 150
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.02 Score=57.58 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=71.3
Q ss_pred ceEEecCHHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhh---hCCcceEEEEECCC--ccchhhhcccccCC
Q 026306 32 RVIHFTSEREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAE---FYPHVKFMRVECPK--YPGFCLTRQRKEYP 104 (240)
Q Consensus 32 rVi~ItSE~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAe---YyPdVlFl~VDVDE--VP~fcvtRqvtkmP 104 (240)
.|+.. +.+.|+..+.. .+--+|.|.|+|| =||..+|.|+++|.. +.|=++...|||-. --+.|.+=.|+-||
T Consensus 40 ~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 40 PIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 34444 57788888865 4578899999999 999999999999975 55778899999953 44679888899999
Q ss_pred eEEEeeCccccccccCCC
Q 026306 105 FIEIFHSPEQASTRERGA 122 (240)
Q Consensus 105 ~Ielw~speqA~~~G~~~ 122 (240)
+|.-|....|-..+|.-+
T Consensus 119 tlryf~~~~~~~~~G~~~ 136 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDV 136 (606)
T ss_pred eeeecCCccccCcCCCcc
Confidence 999998866665566433
No 151
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.28 E-value=0.082 Score=39.47 Aligned_cols=40 Identities=30% Similarity=0.309 Sum_probs=35.7
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
+++.|+.|+-.+| +|+-+.|.++++..++ +++.+..++++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~p 45 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEFP 45 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeCC
Confidence 6788999999999 9999999999999887 89888888775
No 152
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=94.28 E-value=0.044 Score=46.84 Aligned_cols=116 Identities=15% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCcEEEEEeecCC-ccccchH-HH--HHHHhhhCCcceEEEEECCCccch--hh------hcccccCCeEE
Q 026306 40 REFVHILHQGYPVVVAFTIRGN-LTKHLDR-VL--EEAAAEFYPHVKFMRVECPKYPGF--CL------TRQRKEYPFIE 107 (240)
Q Consensus 40 ~qwD~~L~eGkPVVV~FTAsWC-PcryMkP-vF--EELAAeYyPdVlFl~VDVDEVP~f--cv------tRqvtkmP~Ie 107 (240)
+.+++.-.|+|||.|+..++|| +|..|+. .| .|+|+-.-.+..=++||.+|.|.. .. ..+...+|. -
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl-~ 106 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL-T 106 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE-E
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc-e
Confidence 4566665669999999999999 9999985 44 355655534556678999999986 11 113568886 4
Q ss_pred EeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchHHHHHHhhhccccccccc
Q 026306 108 IFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSAACTSSA 172 (240)
Q Consensus 108 lw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~~~~~~~~~~~~~ 172 (240)
+|=+|++...-|+.-=|.-.+ ...=||.+.+++ +++.-+++-..+..+|
T Consensus 107 vfltPdg~p~~~~tY~P~~~~-----------~g~~~f~~~l~~-----i~~~w~~~~~~~~~~a 155 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYFPPEDR-----------YGRPGFLQLLER-----IAELWKENREQVEESA 155 (163)
T ss_dssp EEE-TTS-EEEEESS--SS-B-----------TTB--HHHHHHH-----HHHHHHHSHHHHHHHH
T ss_pred EEECCCCCeeeeeeecCCCCC-----------CCCccHHHHHHH-----HHHHHHHCHHHHHHHH
Confidence 888999888876443333222 233478888764 4455555555554443
No 153
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.69 E-value=0.11 Score=37.33 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=37.3
Q ss_pred CcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch--hhhcc-cccCCeEEE
Q 026306 50 YPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF--CLTRQ-RKEYPFIEI 108 (240)
Q Consensus 50 kPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f--cvtRq-vtkmP~Iel 108 (240)
..-|+.|+.+|| +|+..+-.|++. ++.|-.+|+++-+.. ...+. ....|.|.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 445778999999 999999999865 455567888766443 22222 567887743
No 154
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.54 E-value=0.085 Score=37.02 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=35.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-cccCCeEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-RKEYPFIE 107 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-vtkmP~Ie 107 (240)
|+.|+.+|| +|...+..|++.. +.|-.+|+++-|.. ...+. ...+|.|-
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~ 54 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIF 54 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEE
Confidence 567999999 9999999999754 55677788877643 22222 56677763
No 155
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.43 E-value=0.17 Score=37.36 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=39.2
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcccccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQRKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRqvtkmP~Iel 108 (240)
|+-||.+|| +|...+-+|++. +|.|-.||+++-|.. +........|.|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE
Confidence 778999999 999999999773 678889999987753 33334678888865
No 156
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.22 E-value=0.15 Score=43.18 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=48.2
Q ss_pred cCCcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccc---hhhhc-ccccCCeEEEeeCcc
Q 026306 48 QGYPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPG---FCLTR-QRKEYPFIEIFHSPE 113 (240)
Q Consensus 48 eGkPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~---fcvtR-qvtkmP~Ielw~spe 113 (240)
.|++||+.|. +.|| +|.---|.|.+++.+|. .++.++-|.+|.... ++-+. .+.++|+- |..|+.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fp-llsD~~ 101 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYA-MIGDPT 101 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCcee-EEEcCc
Confidence 4899999999 9999 99888889999999995 578999999998754 33222 12344432 556754
No 157
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.77 E-value=0.24 Score=33.95 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=35.4
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-c-ccCCeEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-R-KEYPFIE 107 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-v-tkmP~Ie 107 (240)
|+.|+.+|| +|...+..|++. ++.|-.+|+++-|.. +..+. . +..|.|-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 678999999 999999999874 566677888876533 44443 3 3788763
No 158
>PF13728 TraF: F plasmid transfer operon protein
Probab=92.16 E-value=0.46 Score=41.16 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=45.2
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC-----ccchhhhc-----c-cccCCeEEEeeCcc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK-----YPGFCLTR-----Q-RKEYPFIEIFHSPE 113 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE-----VP~fcvtR-----q-vtkmP~Ielw~spe 113 (240)
+.-=.+-|+.+.| +|..+.|++..+|.+| ++..+-|++|. +|....++ - ++..|++=|...+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 4555788888889 9999999999999999 66666667664 33333222 2 66777777766644
No 159
>PRK15000 peroxidase; Provisional
Probab=92.08 E-value=0.25 Score=41.90 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=39.7
Q ss_pred cCCcEEEEEeec-CC-ccccchHHHHHHHhhhC-CcceEEEEECCCcc
Q 026306 48 QGYPVVVAFTIR-GN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV~FTAs-WC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP 92 (240)
+|++||+.|.+. || +|.---|.|.+++.+|. .++.++-|.+|...
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 589999999996 89 99888899999999996 46899999999654
No 160
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=91.67 E-value=0.89 Score=35.28 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHhhcCCcEEEEEeecCCccccchHHHHHHHhh---hCCcceEEEEECCCccchhhhcc--cc--cCCeEEEeeC
Q 026306 42 FVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAE---FYPHVKFMRVECPKYPGFCLTRQ--RK--EYPFIEIFHS 111 (240)
Q Consensus 42 wD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAe---YyPdVlFl~VDVDEVP~fcvtRq--vt--kmP~Ielw~s 111 (240)
...+...+.|..+-|. +=--...++..++++|.+ |.-.+.|+.||.++..+ +... ++ +.|+|-|...
T Consensus 9 ~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 9 AEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcc
Confidence 3567777888887776 222457899999999999 98889999999999876 3333 44 4999988765
No 161
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=91.18 E-value=1 Score=33.66 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=56.8
Q ss_pred eEEecCHHHHHHHhh-cCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 33 VIHFTSEREFVHILH-QGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~-eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
|..|+|+++.+.++. +...+||.|..+=-. -+...|+++|..+..+..|.-..=+++... ...+.|.|-|+++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~----~~~~~~~i~l~~~ 75 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFDSKVAKK----LGLKMNEVDFYEP 75 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECcHHHHHH----cCCCCCcEEEeCC
Confidence 678999999999998 788888888776331 256789999999988999966554444221 1456899999987
Q ss_pred -cccc
Q 026306 112 -PEQA 115 (240)
Q Consensus 112 -peqA 115 (240)
.+..
T Consensus 76 ~~e~~ 80 (102)
T cd03066 76 FMEEP 80 (102)
T ss_pred CCCCC
Confidence 4443
No 162
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.02 E-value=0.26 Score=34.21 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=36.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch--hhhc-ccccCCeEEEeeCc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF--CLTR-QRKEYPFIEIFHSP 112 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f--cvtR-qvtkmP~Ielw~sp 112 (240)
|+-||.+|| +|...+-.|++. ++.|-.+|+++-+.. ...+ .....|.| |-+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g 58 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDG 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECC
Confidence 678999999 999999999975 455667888876632 2222 25567766 4444
No 163
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=90.90 E-value=0.42 Score=39.81 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=37.0
Q ss_pred cCCcEEEEEee-cCC-ccccchHHHHHHHhhhC-CcceEEEEECCCcc
Q 026306 48 QGYPVVVAFTI-RGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV~FTA-sWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP 92 (240)
.|+++||.|++ .|| .|..-.+-|.+++.+|. .++.++-|.+|...
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 48999999997 478 88777789999999995 36888888888653
No 164
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=90.75 E-value=0.59 Score=37.62 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=48.4
Q ss_pred EEecCHHHHHHHhhc--CCcEEEEEeec-CC-ccccchHHHHHHHhhhCCc-ceEEEEECCCccch--hhhcc---cccC
Q 026306 34 IHFTSEREFVHILHQ--GYPVVVAFTIR-GN-LTKHLDRVLEEAAAEFYPH-VKFMRVECPKYPGF--CLTRQ---RKEY 103 (240)
Q Consensus 34 i~ItSE~qwD~~L~e--GkPVVV~FTAs-WC-PcryMkPvFEELAAeYyPd-VlFl~VDVDEVP~f--cvtRq---vtkm 103 (240)
.+++|+++|++++++ .+|++| |=.| .| -+..-..-||+.+.+. ++ +.++.+||-+.=.. -|++. .-+=
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~i-FKHSt~C~IS~~a~~~~e~~~~~~-~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLI-FKHSTRCPISAMALREFEKFWEES-PDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEE-EEE-TT-HHHHHHHHHHHHHHHHH-T----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhcccCcEEE-EEeCCCChhhHHHHHHHHHHhhcC-CccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 578999999999998 777655 5555 78 6777788999999999 55 99999999765222 22222 3355
Q ss_pred CeEEEeeCcc
Q 026306 104 PFIEIFHSPE 113 (240)
Q Consensus 104 P~Ielw~spe 113 (240)
|-|=|+++++
T Consensus 80 PQ~ili~~g~ 89 (105)
T PF11009_consen 80 PQVILIKNGK 89 (105)
T ss_dssp SEEEEEETTE
T ss_pred CcEEEEECCE
Confidence 6666666654
No 165
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=90.65 E-value=0.57 Score=32.70 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=35.7
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-cccCCeE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-RKEYPFI 106 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-vtkmP~I 106 (240)
|+.|+.+|| .|+..+-.|++. ++.|-.+|+++-|.. +..+. ....|.|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 678999999 999999999984 566678899887752 33332 4566766
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.64 E-value=0.39 Score=33.66 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=37.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcccccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQRKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRqvtkmP~Iel 108 (240)
|+.|+.++| +|+..+..|++. ++.|-.+|+++-|.. +........|.|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467899999 999999999873 677788899887643 22223567888865
No 167
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=90.08 E-value=0.65 Score=36.68 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=49.5
Q ss_pred hcCCcEEEEEeec----CC-cc--ccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc--cccCCeEEEee
Q 026306 47 HQGYPVVVAFTIR----GN-LT--KHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ--RKEYPFIEIFH 110 (240)
Q Consensus 47 ~eGkPVVV~FTAs----WC-Pc--ryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq--vtkmP~Ielw~ 110 (240)
+++|+++|.+..+ || +| .+.+|-+-+.-. .+..+...||.+--+.=++++ ++.||++=+.-
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIM 84 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEE
Confidence 4499999999999 88 88 456776666654 468999999998888877777 88999998874
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.98 E-value=0.94 Score=42.76 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=53.1
Q ss_pred CCcE-EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 49 GYPV-VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 49 GkPV-VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
.+|+ |-.|....| +|......++++|.+. |+|.+-.||..+.|...-+.++..-|++=+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLN-PNITHTMIDGALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-CCceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence 6788 667777799 9999999999999987 999999999999999999888999998843
No 169
>PRK13191 putative peroxiredoxin; Provisional
Probab=89.93 E-value=0.44 Score=40.99 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=39.3
Q ss_pred cCCcEEE-EEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccc
Q 026306 48 QGYPVVV-AFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPG 93 (240)
Q Consensus 48 eGkPVVV-~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~ 93 (240)
.|+++|+ .|.|+|| +|.---|.|++++.+|. .++.++-|.+|....
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 4888776 8899999 99777799999999995 579999999998753
No 170
>PRK13190 putative peroxiredoxin; Provisional
Probab=89.92 E-value=0.47 Score=39.98 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=37.2
Q ss_pred cCCcEEE-EEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCc
Q 026306 48 QGYPVVV-AFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKY 91 (240)
Q Consensus 48 eGkPVVV-~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEV 91 (240)
+|+++|+ .|.|+|| +|.---|.|.+++.+|. .++.++-|.+|..
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 5888776 5899999 99877789999999995 3689999999976
No 171
>PRK10638 glutaredoxin 3; Provisional
Probab=89.92 E-value=0.3 Score=35.12 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=36.4
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc---hhhhcc-cccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG---FCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~---fcvtRq-vtkmP~Iel 108 (240)
|+-|+.+|| +|+..+-.|++.-.+ |-.+||++-+. -...+. ....|.|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~------y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVS------FQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCC------cEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 678899999 999999999986544 45688877653 244444 667887744
No 172
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=89.51 E-value=0.57 Score=37.69 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=39.4
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcccccCCeEEEee
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQRKEYPFIEIFH 110 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRqvtkmP~Ielw~ 110 (240)
+..-++.||.+|| -|+..=|+|.++|..- |++.+=-+..|+-+.. -.+-.....|++=++.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEc
Confidence 5668999999999 9999999999999987 8776666666654432 2334478899997774
No 173
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=89.47 E-value=1.4 Score=34.54 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCcEEEEE-eecCC----ccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhcc--cc--c--CCeEEEee
Q 026306 49 GYPVVVAF-TIRGN----LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQ--RK--E--YPFIEIFH 110 (240)
Q Consensus 49 GkPVVV~F-TAsWC----PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRq--vt--k--mP~Ielw~ 110 (240)
..|+++.| ...|. -..++...|.|+|.+|. ..+.|+.||.++..+ +... ++ + .|.+-|..
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~--~l~~fgl~~~~~~~P~~~i~~ 85 (111)
T cd03073 14 KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH--ELEEFGLDFSGGEKPVVAIRT 85 (111)
T ss_pred cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH--HHHHcCCCcccCCCCEEEEEe
Confidence 45555555 34343 34789999999999997 589999999998765 2233 43 3 89888855
No 174
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=89.47 E-value=0.52 Score=39.57 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=36.7
Q ss_pred C-CcEE-EEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCcc
Q 026306 49 G-YPVV-VAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYP 92 (240)
Q Consensus 49 G-kPVV-V~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP 92 (240)
| ++|| +.|.|+|| .|..--|.|.+++.+|. .++.++-|.+|...
T Consensus 24 g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 24 GDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred CCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 5 6654 48899999 99888899999999995 46999999999754
No 175
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.97 E-value=0.64 Score=34.38 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCcEEEEEee-----cCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-cccCCeEEEeeCc
Q 026306 49 GYPVVVAFTI-----RGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-RKEYPFIEIFHSP 112 (240)
Q Consensus 49 GkPVVV~FTA-----sWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-vtkmP~Ielw~sp 112 (240)
++|||| |+- +|| +|+..+..|+++- +.|-.+|+++-+.. +..+. ....|.| |-+.
T Consensus 7 ~~~vvv-f~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g 71 (90)
T cd03028 7 ENPVVL-FMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNG 71 (90)
T ss_pred cCCEEE-EEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECC
Confidence 456555 565 599 9999999998875 55667777665543 44443 5678876 5453
No 176
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.82 E-value=1.4 Score=31.57 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=38.7
Q ss_pred eecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 57 TIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 57 TAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
..++| .|..+...++++++++ ++..=.+|+.+.+.. .+.++...|++=|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~--~i~~ei~~~~~~~~~-~~ygv~~vPalvI 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEEL--GIEVEIIDIEDFEEI-EKYGVMSVPALVI 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHT--TEEEEEEETTTHHHH-HHTT-SSSSEEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhc--CCeEEEEEccCHHHH-HHcCCCCCCEEEE
Confidence 34457 9999999999999999 488888888666655 6666999999944
No 177
>PRK13599 putative peroxiredoxin; Provisional
Probab=87.83 E-value=0.67 Score=39.96 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=39.4
Q ss_pred cCCcE-EEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccc
Q 026306 48 QGYPV-VVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPG 93 (240)
Q Consensus 48 eGkPV-VV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~ 93 (240)
.|+++ ++.|.|.|| +|.---|.|.+++.+|. .++.++-|.+|..+.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~ 75 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFS 75 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 38886 479999999 99888889999999995 479999999999753
No 178
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=1 Score=33.28 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=39.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc----hhhhcc--cccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG----FCLTRQ--RKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~----fcvtRq--vtkmP~Iel 108 (240)
|+-||-+|| +|...+..|++. ++.|-.||+++-+. .-+.|. ....|.|-|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 678999999 999999998843 66778899999983 445555 588887755
No 179
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=87.13 E-value=1.1 Score=33.92 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHhhcCCcEEEEEe-----ecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch---hhhcc-cccCCeE
Q 026306 42 FVHILHQGYPVVVAFT-----IRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF---CLTRQ-RKEYPFI 106 (240)
Q Consensus 42 wD~~L~eGkPVVV~FT-----AsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f---cvtRq-vtkmP~I 106 (240)
+.+.+-.+.+||| |+ ++|| +|...+..|.++- |.|-.+|+++-|.. +..+. ....|.|
T Consensus 4 ~v~~~i~~~~Vvv-f~kg~~~~~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~v 71 (97)
T TIGR00365 4 RIKEQIKENPVVL-YMKGTPQFPQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQL 71 (97)
T ss_pred HHHHHhccCCEEE-EEccCCCCCCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 3333434556555 44 3899 9999999998864 55668899776642 33333 4456655
No 180
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=86.87 E-value=1.1 Score=40.57 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=68.2
Q ss_pred cCCcEEEEEe-ecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCcc--chhhhc--c---cccCCeEEEeeCcccc--
Q 026306 48 QGYPVVVAFT-IRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYP--GFCLTR--Q---RKEYPFIEIFHSPEQA-- 115 (240)
Q Consensus 48 eGkPVVV~FT-AsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP--~fcvtR--q---vtkmP~Ielw~speqA-- 115 (240)
.|++||+.|. |.|| +|.---|.|.+++.+|. .++.++-|-+|... +...+. . ..+.+ +.|..|+..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~-fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLK-FPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcc-eEEEEcCChHHH
Confidence 4788888888 8899 99888899999999996 46899999999842 122221 1 23444 4578886432
Q ss_pred ccccCCCCCC--ceeeeeEeee-------ccccccch-hHHHHHHHhchHHHHHHhhhccccc
Q 026306 116 STRERGADPN--ITKYAVKVLP-------FNYDLSAY-GFREYFKRQGIRHLQKYLKTNSAAC 168 (240)
Q Consensus 116 ~~~G~~~d~~--itrY~vkv~p-------fnyd~S~Y-Gfreffk~~g~~~~~~~~~~~~~~~ 168 (240)
..-| +.+.. ..|+.+-|-| +-|++..- ..-|.|+- +++||.. ..++.+|
T Consensus 176 kayG-v~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~--l~alq~~-~~~g~~c 234 (261)
T PTZ00137 176 KSFG-LLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRL--FDAVQFA-EKTGNVC 234 (261)
T ss_pred HHcC-CCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH--HHHhchh-hhcCCCc
Confidence 2333 32211 1233333222 22333222 46677754 5667653 3446666
No 181
>PRK13189 peroxiredoxin; Provisional
Probab=86.85 E-value=0.92 Score=39.12 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=37.8
Q ss_pred cCCcEEE-EEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCcc
Q 026306 48 QGYPVVV-AFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYP 92 (240)
Q Consensus 48 eGkPVVV-~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP 92 (240)
.|++||+ -|.|+|| .|.---+.|.+++.+|. .++.++-|.+|...
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 4886665 6789999 99988889999999996 56899999999765
No 182
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=0.67 Score=36.88 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG 93 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~ 93 (240)
..||| -|+-+|| +|..++-.|.+ + .+....|+.|+-|.
T Consensus 13 ~~~VV-ifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~ 51 (104)
T KOG1752|consen 13 ENPVV-IFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDED 51 (104)
T ss_pred cCCEE-EEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCC
Confidence 45654 5999998 99999988888 3 44445566665543
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.35 E-value=2.6 Score=40.51 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCcEEE-EEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 49 GYPVVV-AFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 49 GkPVVV-~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
.+|+-| .|..++| +|....-.++++|++- |+|..-.||+.+.|..-=++++-.-|+|=|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNVEAEMIDVSHFPDLKDEYGIMSVPAIVV 535 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCceEEEEECcccHHHHHhCCceecCEEEE
Confidence 688866 5577799 9999999999999998 999999999999998777888999999865
No 184
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=85.72 E-value=1.2 Score=30.11 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=34.0
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG 93 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~ 93 (240)
|+.|+...| .|..+.|.++++...+-.++.|..+.++-.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 42 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGG 42 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCC
Confidence 467888899 99999999999987776778888888776653
No 185
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=84.34 E-value=2.8 Score=37.92 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE 90 (240)
+.--++-|+-+-| +|..+.|++..+|.+| ++..+-|.+|.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y--g~~v~~VS~DG 183 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY--GLSVIPVSVDG 183 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCC
Confidence 5566788888988 9999999999999999 66666666665
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.76 E-value=4.1 Score=38.63 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=52.8
Q ss_pred CCcE-EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 49 GYPV-VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 49 GkPV-VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
.+|+ |-.|.-+-| +|....-.++++|.+. |+|..-.||..+.|..--+.++..-|++=+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~~~~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGALFQDEVEALGIQGVPAVFL 176 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence 6787 666777788 9999999999999998 999999999999999998888999998854
No 187
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=82.28 E-value=2.8 Score=31.98 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhh--CCcceEEEEECCCccch
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEF--YPHVKFMRVECPKYPGF 94 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeY--yPdVlFl~VDVDEVP~f 94 (240)
++++|+.|+-.-| +|..|.+.+.++-++| -.+|.|..+.++...+.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~ 60 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHS 60 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchh
Confidence 6778888888899 9999999999999999 68899999999765553
No 188
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.83 E-value=1.9 Score=40.64 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=50.7
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch--hhhc----------ccccCCeEEEeeCcc------
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF--CLTR----------QRKEYPFIEIFHSPE------ 113 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f--cvtR----------qvtkmP~Ielw~spe------ 113 (240)
|+.||.+|| +|...+..|.+. +|.|-.||+++-|.. .+.+ .....|.|-| +.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~ 75 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYD 75 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCch
Confidence 889999999 999999999884 677788999988742 2222 2456798854 221
Q ss_pred --cccccc----CCCCCCceeeeeEeeecccc
Q 026306 114 --QASTRE----RGADPNITKYAVKVLPFNYD 139 (240)
Q Consensus 114 --qA~~~G----~~~d~~itrY~vkv~pfnyd 139 (240)
.| ..| .++|-.+..-+....|+.|.
T Consensus 76 ~l~~-~~g~l~~~~~~~~~~~~~~~~~p~kY~ 106 (410)
T PRK12759 76 NLMA-RAGEVIARVKGSSLTTFSKTYKPFNYP 106 (410)
T ss_pred HHHH-HhCCHHHHhcCCcccccccccCCCccH
Confidence 11 222 24555566555555566553
No 189
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=5.4 Score=38.24 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=61.6
Q ss_pred CCcceEEecCHHHHHHHhhc---CCcEEEEEeec----CC-ccccchHHHHHHHhhhC---C-----cceEEEEECCCcc
Q 026306 29 GPSRVIHFTSEREFVHILHQ---GYPVVVAFTIR----GN-LTKHLDRVLEEAAAEFY---P-----HVKFMRVECPKYP 92 (240)
Q Consensus 29 g~SrVi~ItSE~qwD~~L~e---GkPVVV~FTAs----WC-PcryMkPvFEELAAeYy---P-----dVlFl~VDVDEVP 92 (240)
.++.||+++. +.|..++.- +..+||-|||. .| =|.-...-|.=+|+.|- | .+-|..||.||.|
T Consensus 38 s~~~VI~~n~-d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 38 SESGVIRMND-DKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred CCCCeEEecC-cchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 4677888854 567777744 89999999998 34 44444444444666653 1 4679999999999
Q ss_pred chhhhcccccCCeEEEeeCccc
Q 026306 93 GFCLTRQRKEYPFIEIFHSPEQ 114 (240)
Q Consensus 93 ~fcvtRqvtkmP~Ielw~speq 114 (240)
+.---=++..-|++-+|+-.++
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~ 138 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKG 138 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCcc
Confidence 9877667999999999954333
No 190
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=81.21 E-value=6 Score=30.51 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=52.0
Q ss_pred eEEecCHHHHHHHhhcC-CcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEe
Q 026306 33 VIHFTSEREFVHILHQG-YPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIF 109 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eG-kPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw 109 (240)
|..|+|+++++..+... ..+||.|...--. -+...|+++|..+..+..|.-+.-+++-. ....+.|.|=||
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~----~~~~~~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDSEIFK----SLKVSPGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChHHHHH----hcCCCCCceEEE
Confidence 67889999999999886 8888888766332 36678999999998999997666554421 113356667777
No 191
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=79.71 E-value=6.8 Score=35.57 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=43.1
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCc--cchhhhc---c------cccCCeEEEeeCc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY--PGFCLTR---Q------RKEYPFIEIFHSP 112 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEV--P~fcvtR---q------vtkmP~Ielw~sp 112 (240)
+.--+|-|+-+-| +|..+.|++..+|.+| ++..+-|++|.. |+|=-.| + ++-.|++=|...+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 4566777777878 9999999999999999 666677777765 4432111 1 5566666665543
No 192
>PRK10824 glutaredoxin-4; Provisional
Probab=79.34 E-value=3 Score=33.60 Aligned_cols=66 Identities=12% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCcEEEEEeec-----CC-ccccchHHHHHHHhhhCCcceEEEEECCCccc---hhhhcc-cccCCeEEE
Q 026306 39 EREFVHILHQGYPVVVAFTIR-----GN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG---FCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 39 E~qwD~~L~eGkPVVV~FTAs-----WC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~---fcvtRq-vtkmP~Iel 108 (240)
..+|.+.+-+..|||| |+.+ || +|+..+-.|.++..+| -.+|+++-|. .+..|. ....| ||
T Consensus 4 ~~~~v~~~I~~~~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~i~~------~~idi~~d~~~~~~l~~~sg~~TVP--QI 74 (115)
T PRK10824 4 TIEKIQRQIAENPILL-YMKGSPKLPSCGFSAQAVQALSACGERF------AYVDILQNPDIRAELPKYANWPTFP--QL 74 (115)
T ss_pred HHHHHHHHHhcCCEEE-EECCCCCCCCCchHHHHHHHHHHcCCCc------eEEEecCCHHHHHHHHHHhCCCCCC--eE
Confidence 3455555555667655 6774 99 9999999999986665 3456665443 333332 33444 55
Q ss_pred eeCcc
Q 026306 109 FHSPE 113 (240)
Q Consensus 109 w~spe 113 (240)
|=+++
T Consensus 75 FI~G~ 79 (115)
T PRK10824 75 WVDGE 79 (115)
T ss_pred EECCE
Confidence 65544
No 193
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=77.89 E-value=2.8 Score=35.08 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=36.0
Q ss_pred CCcEEEEEeecCC-ccccchHHH---HHHHhhhCCcceEEEEECCC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVL---EEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvF---EELAAeYyPdVlFl~VDVDE 90 (240)
|+|-||.|.-.-| .|..+.|.+ +++-..+-+++.|+++.++-
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f 82 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEF 82 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecccc
Confidence 6888999999999 999999977 88888886689999988753
No 194
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=77.27 E-value=17 Score=28.08 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=43.4
Q ss_pred HHHHHHHhhc-CCcEEEEEeecC-CccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCc
Q 026306 39 EREFVHILHQ-GYPVVVAFTIRG-NLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSP 112 (240)
Q Consensus 39 E~qwD~~L~e-GkPVVV~FTAsW-CPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~sp 112 (240)
.++...++.+ ..||.+++...- -+|.-++-+++|+|+-= +.|.+-..|.++ ..|+|.|-.++
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~ 70 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCC
Confidence 3455566655 889988666654 49999999999999976 766664433322 46999986554
No 195
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=75.31 E-value=7.1 Score=37.58 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred cceEEecCHHHHHHHhhc-CCcEEE-EEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhc-ccccCCeE
Q 026306 31 SRVIHFTSEREFVHILHQ-GYPVVV-AFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTR-QRKEYPFI 106 (240)
Q Consensus 31 SrVi~ItSE~qwD~~L~e-GkPVVV-~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtR-qvtkmP~I 106 (240)
+.++.=+..+++..+|.+ ..||.+ .|+..-| +|.-++-++||+|+-= +.|.+-..|.++= ....++ ++.+.|+|
T Consensus 346 ~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~-~~~~~~~~v~~~P~~ 423 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEE-PESETLPKITKLPTV 423 (555)
T ss_pred hhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccc-hhhHhhcCCCcCCEE
Confidence 344444556678888877 888766 5656678 9999999999999655 8888877776542 222222 26778999
Q ss_pred EEee
Q 026306 107 EIFH 110 (240)
Q Consensus 107 elw~ 110 (240)
-|..
T Consensus 424 ~i~~ 427 (555)
T TIGR03143 424 ALLD 427 (555)
T ss_pred EEEe
Confidence 9874
No 196
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=73.95 E-value=3 Score=38.01 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCcceEEecCHHH--HHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCc
Q 026306 28 LGPSRVIHFTSERE--FVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY 91 (240)
Q Consensus 28 lg~SrVi~ItSE~q--wD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEV 91 (240)
.++|+|+..+.+++ .-.....+.|+|+.|-.-=| |-+.=-+.|+++|.+|-.-++|+.|=+.|.
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 47899999988773 22223449999999977767 778888899999999944479999876654
No 197
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=73.53 E-value=6.3 Score=28.66 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=43.0
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Iel 108 (240)
|+-||-+.| -|.-.+..|++++.+. .+..-.||+++=|. +..|=-...|.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~-l~~~Y~~~IPVl~~ 55 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPE-LFEKYGYRIPVLHI 55 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHH-HHHHSCTSTSEEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHH-HHHHhcCCCCEEEE
Confidence 567888888 9999999999999998 59999999998766 55555678888654
No 198
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=71.42 E-value=7.5 Score=30.19 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=34.5
Q ss_pred cCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
++++.|+.|+-.-| .|..+.|.++++..++-.++.|..+-+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 57888999999999 9999999999999999446766655543
No 199
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=69.85 E-value=4.2 Score=37.33 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=58.2
Q ss_pred CCcEEEEEeecCC-cccc----chHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCC-eEEEeeC-ccccc---c
Q 026306 49 GYPVVVAFTIRGN-LTKH----LDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYP-FIEIFHS-PEQAS---T 117 (240)
Q Consensus 49 GkPVVV~FTAsWC-Pcry----MkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP-~Ielw~s-peqA~---~ 117 (240)
|.-+||+++..+| .|.- |....++|+.+.+++|.|+-|.=-..+.-.+-.. +.+.| .|=||.. ..|.- .
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~ 105 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL 105 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence 8999999999999 9954 6666777888888999999998544443332222 22233 5666653 22222 2
Q ss_pred ccCCCCCCceee-----eeEeeeccccccchhHHH
Q 026306 118 RERGADPNITKY-----AVKVLPFNYDLSAYGFRE 147 (240)
Q Consensus 118 ~G~~~d~~itrY-----~vkv~pfnyd~S~YGfre 147 (240)
-||-.|- +--| -+-.++.+|+...|.+=|
T Consensus 106 L~G~kdD-~~iyDRCGrL~~~i~~P~S~l~~~~ve 139 (238)
T PF04592_consen 106 LNGSKDD-FLIYDRCGRLTYHIPLPYSFLQFPYVE 139 (238)
T ss_pred hCCCcCc-EEEEeccCcEEEEecCcHHHhcCHHHH
Confidence 2333332 2222 133456667666555543
No 200
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=69.28 E-value=12 Score=28.25 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEee
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFH 110 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~ 110 (240)
|..|+|.++++..+....++||.|...=-. -+...|.++|..+..+..|.-..-+++-... .. -|.|=||+
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~----~~-~~~ivl~~ 72 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDKQLLEKY----GY-GEGVVLFR 72 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChHHHHHhc----CC-CCceEEEe
Confidence 467889999999998899999999876332 3678899999999888999776666552111 22 57788884
No 201
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=68.43 E-value=10 Score=32.79 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=47.4
Q ss_pred CchhhHHHHHHHHHhhcccccCCcCCCCCcceEEecCHHHHHHHhhc----CCcEEEEEeecCCccccchHHHHHHHhhh
Q 026306 2 EEHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQ----GYPVVVAFTIRGNLTKHLDRVLEEAAAEF 77 (240)
Q Consensus 2 ~~~~~~~~m~~~lr~~~kyytgyp~dlg~SrVi~ItSE~qwD~~L~e----GkPVVV~FTAsWCPcryMkPvFEELAAeY 77 (240)
.|.+|-+.+..-+...-+= .| ..-.-+....+.++|.+.|.+ |.=+||. ..-.+.+.+++.|.+|
T Consensus 11 ~D~~~n~~~~~G~~~~~~~-~g----v~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~------~g~~~~~~~~~vA~~~ 79 (258)
T cd06353 11 GDQGWNYAHDEGRKAAEKA-LG----VEVTYVENVPEGADAERVLRELAAQGYDLIFG------TSFGFMDAALKVAKEY 79 (258)
T ss_pred CccchhHHHHHHHHHHHHh-cC----CeEEEEecCCchHhHHHHHHHHHHcCCCEEEE------CchhhhHHHHHHHHHC
Confidence 4556666556555555441 01 111122333355677777754 7666665 4567889999999999
Q ss_pred CCcceEEEEEC
Q 026306 78 YPHVKFMRVEC 88 (240)
Q Consensus 78 yPdVlFl~VDV 88 (240)
|+++|+.+|.
T Consensus 80 -p~~~F~~~d~ 89 (258)
T cd06353 80 -PDVKFEHCSG 89 (258)
T ss_pred -CCCEEEECCC
Confidence 9999999886
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=9 Score=39.62 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=38.8
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCC-ccccchHH-H--HHHHhhhCCcceEEEEECCC
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGN-LTKHLDRV-L--EEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPv-F--EELAAeYyPdVlFl~VDVDE 90 (240)
|++.|...-.++|||-+.--++|| .|..|..= | +|.|+-- |-.|+.|.||+
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~l--N~~FV~IKVDR 86 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAIL--NENFVPVKVDR 86 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHH--HhCceeeeECh
Confidence 678899998999999999999999 99888542 1 2455544 55677777663
No 203
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=65.25 E-value=9.7 Score=31.33 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
+++.|+.||-..| +|+-+.+.+++.. .++.+..+-++
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~----~~v~v~~~~~p 114 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA----DGVTVRIFPVP 114 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc----CceEEEEEEcC
Confidence 6899999999999 9999999998822 45555555554
No 204
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=63.74 E-value=10 Score=30.46 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=33.1
Q ss_pred hcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 47 HQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 47 ~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
.+|..||+++++ +-++.+..+.+++... .+.++.+|++ +..|++|.
T Consensus 88 ~~G~~VI~d~~~---~~~~~r~~~~~~~~~~--~~~~v~l~~~--~e~~~~R~ 133 (184)
T TIGR00455 88 RNGIIVITSFIS---PYRADRQMVRELIEKG--EFIEVFVDCP--LEVCEQRD 133 (184)
T ss_pred cCCCEEEEecCC---CCHHHHHHHHHhCcCC--CeEEEEEeCC--HHHHHHhC
Confidence 459999999753 4466677788887765 3455777777 56889884
No 205
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=56.42 E-value=24 Score=28.04 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=39.7
Q ss_pred hhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeCccccc
Q 026306 46 LHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHSPEQAS 116 (240)
Q Consensus 46 L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~speqA~ 116 (240)
+.+|..||++.++.|. ..+-.+.++|+. .++.++.++++ +..|..|..+. +|.++.+++
T Consensus 68 ~~~G~~VIid~~~~~~---~~R~~~~~l~~~--~~~~~i~l~~~--~e~~~~R~~~~-----~y~~~~~~~ 126 (149)
T cd02027 68 ADAGLIVIAAFISPYR---EDREAARKIIGG--GDFLEVFVDTP--LEVCEQRDPKG-----LYKKARAGE 126 (149)
T ss_pred HhCCCEEEEccCCCCH---HHHHHHHHhcCC--CCEEEEEEeCC--HHHHHHhCchh-----hHHHHhCCC
Confidence 3559999999875433 334557777763 47888999988 46899998543 444544444
No 206
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=54.99 E-value=45 Score=31.69 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 39 EREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 39 E~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
.++...++.+ ..||.+.+...-| +|.-++-+++|+|+-= +.|.+-..|-+ ...|+|.|..+
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~ 69 (517)
T PRK15317 7 KTQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRP 69 (517)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcC
Confidence 4556666666 8888776666667 9999999999999987 77665433321 23577777643
No 207
>PTZ00062 glutaredoxin; Provisional
Probab=54.76 E-value=29 Score=30.38 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHhhcCCcEEEEEee-----cCC-ccccchHHHHHHHhhhCCcceEEEEECCCccc
Q 026306 42 FVHILHQGYPVVVAFTI-----RGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPG 93 (240)
Q Consensus 42 wD~~L~eGkPVVV~FTA-----sWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~ 93 (240)
+.+.|-...|||| ||- +|| +|+.++-.|++. +|.|-.+|+++-+.
T Consensus 105 ~v~~li~~~~Vvv-f~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~ 155 (204)
T PTZ00062 105 KIERLIRNHKILL-FMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFEDPD 155 (204)
T ss_pred HHHHHHhcCCEEE-EEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCCHH
Confidence 3333333677655 655 689 999999999976 45556788876654
No 208
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=51.13 E-value=28 Score=23.83 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=33.6
Q ss_pred EEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEE
Q 026306 54 VAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 54 V~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Iel 108 (240)
+-|+..|| +|.-.+=.|+|.--+| .+..||...-+.-....+ ..+.|+++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~----e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV----ELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc----EEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 35778899 8888887888776665 444555544333445555 778888863
No 209
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=51.11 E-value=78 Score=24.51 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=31.3
Q ss_pred chHHHHHHHhhhCCcceEEEEECCCccchhhhcccccCCeEEEeeC
Q 026306 66 LDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQRKEYPFIEIFHS 111 (240)
Q Consensus 66 MkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRqvtkmP~Ielw~s 111 (240)
+...|+++|.++..++.|+.+.=.++ +-.-++++ |+|-+|++
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~~~---~~~~~~~~-p~i~~~k~ 49 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNEEL---AKKYGIKE-PTIVVYKK 49 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-HHH---HHHCTCSS-SEEEEEEC
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHHHH---HHHhCCCC-CcEEEecc
Confidence 34679999999977999999984332 22234666 99999987
No 210
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=51.09 E-value=47 Score=26.82 Aligned_cols=46 Identities=17% Similarity=-0.068 Sum_probs=33.8
Q ss_pred cCCcEEEEEeec-CC-ccccc-hHHHHHHHhhhC-Ccc-eEEEEECCCccc
Q 026306 48 QGYPVVVAFTIR-GN-LTKHL-DRVLEEAAAEFY-PHV-KFMRVECPKYPG 93 (240)
Q Consensus 48 eGkPVVV~FTAs-WC-PcryM-kPvFEELAAeYy-PdV-lFl~VDVDEVP~ 93 (240)
.|++||+-|.-. || .|.-= -+-|.+.+.+|. .++ ..+.|-+|....
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH
Confidence 467777777655 99 88664 777999999994 346 588888887653
No 211
>PRK06762 hypothetical protein; Provisional
Probab=50.56 E-value=28 Score=27.24 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=33.9
Q ss_pred hcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 47 HQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 47 ~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
..|..||++.+.. +. ...+.+++++.++.-.+.++.+|+| +..|..|.
T Consensus 66 ~~g~~vild~~~~--~~-~~~~~~~~l~~~~~~~~~~v~Ldap--~e~~~~R~ 113 (166)
T PRK06762 66 GHCEFVILEGILN--SD-RYGPMLKELIHLFRGNAYTYYFDLS--FEETLRRH 113 (166)
T ss_pred hCCCEEEEchhhc--cH-hHHHHHHHHHHhcCCCeEEEEEeCC--HHHHHHHH
Confidence 4488899986632 22 3456789999988545677777876 46799887
No 212
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=50.09 E-value=9.6 Score=30.02 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHhchHHHHHHhhhcc
Q 026306 140 LSAYGFREYFKRQGIRHLQKYLKTNS 165 (240)
Q Consensus 140 ~S~YGfreffk~~g~~~~~~~~~~~~ 165 (240)
-++.|||+|| .|++||...+|-+
T Consensus 11 ~tvHGfRCML---AiKYlq~~~~~Y~ 33 (78)
T PF01524_consen 11 ETVHGFRCML---AIKYLQLVEKTYS 33 (78)
T ss_pred ccccchhHHH---HHHHHHHcccccC
Confidence 3889999999 6888887665543
No 213
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=49.39 E-value=42 Score=29.75 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=43.8
Q ss_pred CchhhHHHHHHHHHhhcccccCCcCCCCCcceEEec-CHHHHHHHh----hcCCcEEEEEeecCCccccchHHHHHHHhh
Q 026306 2 EEHSIFHRMISHLRSTCKYYTGYPKDLGPSRVIHFT-SEREFVHIL----HQGYPVVVAFTIRGNLTKHLDRVLEEAAAE 76 (240)
Q Consensus 2 ~~~~~~~~m~~~lr~~~kyytgyp~dlg~SrVi~It-SE~qwD~~L----~eGkPVVV~FTAsWCPcryMkPvFEELAAe 76 (240)
.|.+|-+.+..-|....+=+.|. .-..+..+. +.++..+.+ .+|.-+||.=. -.+.-.+.++|.+
T Consensus 13 ~D~g~n~~~~~G~~~~~~~~~~i----~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g------~~~~~~~~~vA~~ 82 (306)
T PF02608_consen 13 NDKGFNQSAYEGLKRAEKELDGI----EIIYVENVPETDADYEEAIRQLADQGYDLIIGHG------FEYSDALQEVAKE 82 (306)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTE----EEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEES------GGGHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHHHHcCCc----eEEEEecCCccHHHHHHHHHHHHHcCCCEEEEcc------HHHHHHHHHHHHH
Confidence 46777777777776665533111 111222222 233444444 44877776522 2344577899999
Q ss_pred hCCcceEEEEECCCcc
Q 026306 77 FYPHVKFMRVECPKYP 92 (240)
Q Consensus 77 YyPdVlFl~VDVDEVP 92 (240)
| |++.|+.+|-....
T Consensus 83 y-Pd~~F~~~d~~~~~ 97 (306)
T PF02608_consen 83 Y-PDTKFIIIDGYIDA 97 (306)
T ss_dssp --TTSEEEEESS---S
T ss_pred C-CCCEEEEEecCcCC
Confidence 9 99999999865443
No 214
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=47.69 E-value=36 Score=28.11 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=30.2
Q ss_pred cCCcEEEEEeecCC--cc----ccchHHHHHHHhhhCCcceEEEEECC
Q 026306 48 QGYPVVVAFTIRGN--LT----KHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 48 eGkPVVV~FTAsWC--Pc----ryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
.|++++|.|.-+-| -| ..|+-..++|..+ ..++.|+.|-+|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeC
Confidence 49999999999977 34 4567777777777 457777777776
No 215
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=45.53 E-value=69 Score=30.21 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=77.0
Q ss_pred CCcceEEec---CHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEE-------------------
Q 026306 29 GPSRVIHFT---SEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRV------------------- 86 (240)
Q Consensus 29 g~SrVi~It---SE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~V------------------- 86 (240)
.+.+|+-.- ||.++..++++.-+ .|+..+.++...|.|.+.|+.|
T Consensus 269 ~P~~IiiyRDGvsegq~~~v~~~E~~-------------~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~ 335 (426)
T cd04657 269 LPERIIYYRDGVSEGQFAQVLNEELP-------------AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGK 335 (426)
T ss_pred CCceEEEEEcCcCHHHHHHHHHHHHH-------------HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCccccccc
Confidence 445555443 88888888866443 4567777777777788888777
Q ss_pred ECCCccchhhhcccccCCeEEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHHhchHHHHHHhhhccc
Q 026306 87 ECPKYPGFCLTRQRKEYPFIEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKRQGIRHLQKYLKTNSA 166 (240)
Q Consensus 87 DVDEVP~fcvtRqvtkmP~Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~~g~~~~~~~~~~~~~ 166 (240)
--|-.||.+|.+.+|.--..|.|--. |+..+|-+ .+++|.|-.-=-+++ ...+..|--.|--+-+
T Consensus 336 ~~N~~pGTvVd~~it~p~~~dFyL~s-h~~~qGTa---rPt~Y~vl~d~~~~~-----------~d~lq~lt~~lc~~y~ 400 (426)
T cd04657 336 NGNVPPGTVVDRGITHPREFDFYLCS-HAGIQGTA---RPTHYHVLWDEIGFT-----------ADELQTLTYNLCYTYA 400 (426)
T ss_pred CCCCCCCeEEecccCCCCceeEEEec-cccCccCC---CCceEEEEECCCCCC-----------HHHHHHHHHHHhhccc
Confidence 24556899999998875566666654 56777744 589997754211211 2344444445555666
Q ss_pred ccccccCCCc
Q 026306 167 ACTSSARSPV 176 (240)
Q Consensus 167 ~~~~~~~~~~ 176 (240)
-||.+-+-|.
T Consensus 401 ~~~~~vsip~ 410 (426)
T cd04657 401 RCTRSVSIPP 410 (426)
T ss_pred ccCCCcccch
Confidence 6777666553
No 216
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=44.89 E-value=1.3e+02 Score=25.86 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=43.3
Q ss_pred ccccCCcCCCCCcceEEecC-------HHHHHHHhhc-CCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCC
Q 026306 19 KYYTGYPKDLGPSRVIHFTS-------EREFVHILHQ-GYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPK 90 (240)
Q Consensus 19 kyytgyp~dlg~SrVi~ItS-------E~qwD~~L~e-GkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDE 90 (240)
.||.--|.+.....|+-++. ...-.+.|.+ |-.=|+.-+.-.+ ..-++++++.| |++..+..-+|+
T Consensus 111 ~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~ll~~-----~~gl~~l~~~~-p~v~i~~~~id~ 184 (207)
T TIGR01091 111 PYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAA-----PEGIEAVEKAH-PDVDIYTAAIDE 184 (207)
T ss_pred EEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEEecC-----HHHHHHHHHHC-CCCEEEEEEECC
Confidence 37888888888888888773 3333444433 5332222222222 36788999999 999999998887
No 217
>PLN03202 protein argonaute; Provisional
Probab=42.78 E-value=99 Score=32.60 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcccccCCcCCCCCcceEEec---CHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEE
Q 026306 8 HRMISHLRSTCKYYTGYPKDLGPSRVIHFT---SEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFM 84 (240)
Q Consensus 8 ~~m~~~lr~~~kyytgyp~dlg~SrVi~It---SE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl 84 (240)
+.|...|+...+--. ..-+.+|+-.- ||-||.+++++.-+ .|+-.++++...|.|.+-|+
T Consensus 692 ~m~~~~L~~~~~~~~----~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~-------------~i~~a~~~~~~~~~Pkit~I 754 (900)
T PLN03202 692 GIIRELLLDFYTSSG----KRKPEQIIIFRDGVSESQFNQVLNIELD-------------QIIEACKFLDESWSPKFTVI 754 (900)
T ss_pred HHHHHHHHHHHHHcC----CCCCceeEEEecCCCHHHHHHHHHHHHH-------------HHHHHHHHhCCCCCCcEEEE
Confidence 445667766544322 24566777655 89999999976433 33455555544555666665
Q ss_pred EEE-------------CCCccchhhhcccccCCeEEEeeCccccccccCCCCCCceeeeeEeeeccccccchhHHHHHHH
Q 026306 85 RVE-------------CPKYPGFCLTRQRKEYPFIEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSAYGFREYFKR 151 (240)
Q Consensus 85 ~VD-------------VDEVP~fcvtRqvtkmP~Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~YGfreffk~ 151 (240)
-|- -|-.||.+|.|.||.==..+.|--. |+..||-+ .+++|.|=. |-.. |..
T Consensus 755 vv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~S-h~~~qGTa---rPthY~Vl~-----de~~------~~~ 819 (900)
T PLN03202 755 VAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCA-HAGMIGTT---RPTHYHVLL-----DEIG------FSA 819 (900)
T ss_pred EEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEec-ccccccCC---cCceEEEEE-----CCCC------CCH
Confidence 542 5777899999998864455555544 67778854 588997743 3331 122
Q ss_pred hchHHHHHHhhhcccccccccCCC
Q 026306 152 QGIRHLQKYLKTNSAACTSSARSP 175 (240)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~~~~~ 175 (240)
..+..|--.|--.-+-||.+-+-|
T Consensus 820 d~lq~lty~lc~~y~~~t~~Vsvp 843 (900)
T PLN03202 820 DDLQELVHSLSYVYQRSTTAISVV 843 (900)
T ss_pred HHHHHHHHHHhhhhcccCCceecc
Confidence 334444444555566777776655
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.90 E-value=1e+02 Score=29.40 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHhhc-CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEE
Q 026306 39 EREFVHILHQ-GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRV 86 (240)
Q Consensus 39 E~qwD~~L~e-GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~V 86 (240)
.++...+|.+ ..||.+.+...-| +|.-++-+++|+|+-= +.|.+-.-
T Consensus 7 ~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~ 55 (515)
T TIGR03140 7 LAQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQN 55 (515)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEe
Confidence 4566666666 8888776555557 9999999999999977 76666433
No 219
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=41.30 E-value=1.6e+02 Score=29.19 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=61.6
Q ss_pred CCcCCCCCcceEEecCHHHHHHHhhcCCcEEEEEeecCC--ccc----cchHHHHHHHhhhC--CcceEEEEECCCccch
Q 026306 23 GYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN--LTK----HLDRVLEEAAAEFY--PHVKFMRVECPKYPGF 94 (240)
Q Consensus 23 gyp~dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC--Pcr----yMkPvFEELAAeYy--PdVlFl~VDVDEVP~f 94 (240)
.||...|+-||+.+ |+.-|.+.+.+-..+||.|..+=- +.- .|.--+=||||.-- .+|-|..||..+=- .
T Consensus 26 efP~YDGkDRVi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~-k 103 (383)
T PF01216_consen 26 EFPEYDGKDRVIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA-K 103 (383)
T ss_dssp SSSS-SSS--CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH-H
T ss_pred CCccCCCccceEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH-H
Confidence 48999999999998 688999999999999999998843 221 24443445666543 56999999998863 3
Q ss_pred hhhc-ccccCCeEEEeeCcccccccc
Q 026306 95 CLTR-QRKEYPFIEIFHSPEQASTRE 119 (240)
Q Consensus 95 cvtR-qvtkmP~Ielw~speqA~~~G 119 (240)
+.+. ++.+-++|=+|++.+--+--|
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEydG 129 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEYDG 129 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE-S
T ss_pred HHHhcCccccCcEEEEECCcEEEecC
Confidence 3322 289999999999876544443
No 220
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=41.04 E-value=64 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhcccc
Q 026306 41 EFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQRK 101 (240)
Q Consensus 41 qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRqvt 101 (240)
.-..++.+|+.|||+.+.. .++.+.+.+..+. .++.|+.++|+ +..|..|...
T Consensus 77 ~~~~~l~~G~~VIvD~~~~------~~~~~r~~~~~~~~~~~~~v~l~~~--~~~l~~R~~~ 130 (175)
T cd00227 77 AVAAMARAGANVIADDVFL------GRAALQDCWRSFVGLDVLWVGVRCP--GEVAEGRETA 130 (175)
T ss_pred HHHHHHhCCCcEEEeeecc------CCHHHHHHHHHhcCCCEEEEEEECC--HHHHHHHHHh
Confidence 3455667799999998754 1233333333332 25788888888 4789988743
No 221
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=40.40 E-value=50 Score=23.90 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.0
Q ss_pred HHHHhhcCCcEEEEEeecC-CccccchHHHHHHHhhhCC
Q 026306 42 FVHILHQGYPVVVAFTIRG-NLTKHLDRVLEEAAAEFYP 79 (240)
Q Consensus 42 wD~~L~eGkPVVV~FTAsW-CPcryMkPvFEELAAeYyP 79 (240)
....+.+|++|+|+|.--- ..+-+++-.|-.|..+| +
T Consensus 10 i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~-~ 47 (74)
T PF14213_consen 10 IEPALKEGEKVVLDFEGVESITSSFLNEAFGQLVREF-G 47 (74)
T ss_pred HHHHHhcCCeEEEECCCcccccHHHHHHHHHHHHHHc-C
Confidence 4455667999999999773 49999999999999999 5
No 222
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.18 E-value=75 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.0
Q ss_pred CHHHHHHHhhcCCcEEEEEeecCCcc-ccchHHHHHHHhhhCCcceEEEE
Q 026306 38 SEREFVHILHQGYPVVVAFTIRGNLT-KHLDRVLEEAAAEFYPHVKFMRV 86 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAsWCPc-ryMkPvFEELAAeYyPdVlFl~V 86 (240)
+.+++.+.+.+.+|=+|.+|+.+.+. ..+....+. +.+..|++..+--
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~-~k~~~p~~~iv~G 87 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARA-IKERNPNIPIVVG 87 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHH-HHTTCTTSEEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHH-HHhcCCCCEEEEE
Confidence 34888888888899999999987755 344444444 6666688887754
No 223
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=37.23 E-value=1.2e+02 Score=23.71 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 49 GYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 49 GkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
|+.+||+-|+ +.+...+.+.++.+++.++.+|++ +..|..|-
T Consensus 70 ~~~~Vi~~t~-------~~~~~r~~~~~~~~~~~~i~l~~~--~e~~~~R~ 111 (163)
T TIGR01313 70 NKVGIITCSA-------LKRHYRDILREAEPNLHFIYLSGD--KDVILERM 111 (163)
T ss_pred CCCEEEEecc-------cHHHHHHHHHhcCCCEEEEEEeCC--HHHHHHHH
Confidence 7777776653 244444555566678888999987 67888886
No 224
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=35.95 E-value=30 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=24.4
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCc
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKY 91 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEV 91 (240)
|..|+.++| +|+-.+.+|++. ++.|-.+|+.+-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 356888999 999998888885 445566676553
No 225
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=34.68 E-value=21 Score=28.47 Aligned_cols=13 Identities=54% Similarity=0.966 Sum_probs=11.1
Q ss_pred ccchhHHHHHHHh
Q 026306 140 LSAYGFREYFKRQ 152 (240)
Q Consensus 140 ~S~YGfreffk~~ 152 (240)
-.+|.||||+||.
T Consensus 52 ~~vYSFreYlKr~ 64 (83)
T PF10751_consen 52 RKVYSFREYLKRV 64 (83)
T ss_pred CceeeHHHHHHHh
Confidence 4579999999986
No 226
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=33.83 E-value=76 Score=27.27 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=33.4
Q ss_pred hhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 46 LHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 46 L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
+.+|..|||+.|... ......+.++|.++...+.++.++++ ...|..|.
T Consensus 72 l~~g~~vIid~~~~~---~~~~~~~~~la~~~~~~~~~v~l~~~--~e~~~~R~ 120 (300)
T PHA02530 72 LKSGKSVIISDTNLN---PERRRKWKELAKELGAEFEEKVFDVP--VEELVKRN 120 (300)
T ss_pred HHcCCeEEEeCCCCC---HHHHHHHHHHHHHcCCeEEEEEeCCC--HHHHHHHH
Confidence 345899999866442 33344678889888666777777775 45677776
No 227
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=31.69 E-value=73 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECC
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECP 89 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVD 89 (240)
|+.+|+.||=.-| +|+-+.+-++++.. .+|.+..+..+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P 145 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFP 145 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEecc
Confidence 7899999999999 99999888887744 23555545444
No 228
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=31.20 E-value=1.2e+02 Score=23.77 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEecCHHHHHHHhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEE
Q 026306 33 VIHFTSEREFVHILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRV 86 (240)
Q Consensus 33 Vi~ItSE~qwD~~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~V 86 (240)
|..|+|.++|.. +.-++..||.|--+----.| ..|+++|+.++.+-.|+-.
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY--~~f~kvA~~lr~dC~F~v~ 51 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEY--DNFRKVANILRDDCSFLVG 51 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhH--HHHHHHHHHHhhcCeEEEE
Confidence 356889999998 66688888888766331111 4689999999888888743
No 229
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=31.13 E-value=93 Score=19.27 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=29.4
Q ss_pred EEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccch-hhhcc-cccCCeEEE
Q 026306 55 AFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF-CLTRQ-RKEYPFIEI 108 (240)
Q Consensus 55 ~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f-cvtRq-vtkmP~Iel 108 (240)
-|+..+| .|+.++-.|++...+| ....++-++-+.. ...+. ....|.++.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLPY----ELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCCc----EEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 3566778 8998888888887666 2223333332221 22222 667888865
No 230
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=29.95 E-value=74 Score=21.26 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=30.0
Q ss_pred EEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCcc-chhhhcccccCCeEE
Q 026306 54 VAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP-GFCLTRQRKEYPFIE 107 (240)
Q Consensus 54 V~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP-~fcvtRqvtkmP~Ie 107 (240)
.-|+.++| +|+-.+-.+++..-+| + ...||...-+ .+.--....+.|.++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~--~--~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV--E--IIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc--E--EEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 45788888 8998888888888777 2 2234433222 222112256677665
No 231
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=29.51 E-value=91 Score=31.16 Aligned_cols=50 Identities=10% Similarity=-0.112 Sum_probs=35.4
Q ss_pred HhhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 45 ILHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 45 ~L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
.|.+|++||||-|- ..+..+-.+.++|.++ .+.+..|.++-=...|..|.
T Consensus 416 ~L~~G~sVVIDaTn---~~~~~R~~~i~lAk~~--gv~v~~i~~~~p~e~~~~Rn 465 (526)
T TIGR01663 416 ALDQGKRCAIDNTN---PDAASRAKFLQCARAA--GIPCRCFLFNAPLAQAKHNI 465 (526)
T ss_pred HHhCCCcEEEECCC---CCHHHHHHHHHHHHHc--CCeEEEEEeCCCHHHHHHHH
Confidence 45669999998664 3445667789999999 55555555554467788777
No 232
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.33 E-value=5.8 Score=37.13 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=43.2
Q ss_pred cccCCeEEEeeC-ccccccccCCCCCCceeeeeEeeeccc-cccch---------hHHHHHHHhchHHHHH--Hhhhccc
Q 026306 100 RKEYPFIEIFHS-PEQASTRERGADPNITKYAVKVLPFNY-DLSAY---------GFREYFKRQGIRHLQK--YLKTNSA 166 (240)
Q Consensus 100 vtkmP~Ielw~s-peqA~~~G~~~d~~itrY~vkv~pfny-d~S~Y---------Gfreffk~~g~~~~~~--~~~~~~~ 166 (240)
..+||-|.=+-| ++.|+..+...-.-.....|+++|||- ..+.| -|.+.|+++|+...-. .=..-.|
T Consensus 254 ~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~a 333 (348)
T PRK14467 254 MLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIFG 333 (348)
T ss_pred EEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchhh
Confidence 446777776777 778777664443222356799999993 22222 1566666666654322 1122346
Q ss_pred ccccccCCCcc
Q 026306 167 ACTSSARSPVQ 177 (240)
Q Consensus 167 ~~~~~~~~~~~ 177 (240)
||.--+..-||
T Consensus 334 aCGqL~~~~~~ 344 (348)
T PRK14467 334 ACGQLRKKRVQ 344 (348)
T ss_pred cccchhHhhhh
Confidence 77655544443
No 233
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=28.52 E-value=98 Score=28.32 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=51.4
Q ss_pred ccccchHHHHHHHhhhCCcceEEEEECCCcc-----chhhhcc-cccC-CeEEEeeCccccc--cc-cCCC----CCC--
Q 026306 62 LTKHLDRVLEEAAAEFYPHVKFMRVECPKYP-----GFCLTRQ-RKEY-PFIEIFHSPEQAS--TR-ERGA----DPN-- 125 (240)
Q Consensus 62 PcryMkPvFEELAAeYyPdVlFl~VDVDEVP-----~fcvtRq-vtkm-P~Ielw~speqA~--~~-G~~~----d~~-- 125 (240)
..++..+.++++..+-.|.-.++.|.++.+| ++.++|| +..| ..++-=.||.+.. -. |... +|.
T Consensus 144 aa~~~~~l~~~l~~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~~~~~~~~~~~dp~g~~yywl~~~~~~~~~~~~tD 223 (257)
T PRK13932 144 AGKFARKLARKVLREGLPPDTILSVNIPNVPESDIQGVLITRQGRSRWEEDAIERHDMYGNPYYWLNGTLQLLDDSLTQD 223 (257)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCccccCCEEEeeCCCcccccceEEeECcCCCeEEEECCCccCCCCCCCCh
Confidence 3466666677665553477789999999654 6788998 3322 1222222333221 00 1111 111
Q ss_pred ---ceeeeeEeeeccccccchhHHHHHH
Q 026306 126 ---ITKYAVKVLPFNYDLSAYGFREYFK 150 (240)
Q Consensus 126 ---itrY~vkv~pfnyd~S~YGfreffk 150 (240)
+.+=-|.|+|-.+|+..|.+-+-++
T Consensus 224 ~~al~~GyISvTPL~~dlT~~~~l~~l~ 251 (257)
T PRK13932 224 EYAVRHNYVAVTPLSCDLTNHDFLSSLE 251 (257)
T ss_pred HHHHHCCcEEEecCCcCCcChHHHHHHH
Confidence 1222489999999999988755554
No 234
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=28.11 E-value=38 Score=27.92 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=30.9
Q ss_pred CCeEEEeeCcccc--ccccCCCCCCceeee----------eEeeeccccccchhHH------HHHHHhchHH
Q 026306 103 YPFIEIFHSPEQA--STRERGADPNITKYA----------VKVLPFNYDLSAYGFR------EYFKRQGIRH 156 (240)
Q Consensus 103 mP~Ielw~speqA--~~~G~~~d~~itrY~----------vkv~pfnyd~S~YGfr------effk~~g~~~ 156 (240)
|..||||.-..-- .+=|-.+||..-|++ |.|.+||....+=-|. ++|+++|...
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~ 72 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEA 72 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCccc
Confidence 6789999875532 344677888877765 7888999999887775 3555555433
No 235
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=27.89 E-value=1.1e+02 Score=22.91 Aligned_cols=49 Identities=29% Similarity=0.304 Sum_probs=29.6
Q ss_pred hhcCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 46 LHQGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 46 L~eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
+..|.++||+-| ....-....+.++|.++--.+..+.+++++ ..|..|.
T Consensus 67 l~~g~~~vvd~~---~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~--~~~~~R~ 115 (143)
T PF13671_consen 67 LRNGNSVVVDNT---NLSREERARLRELARKHGYPVRVVYLDAPE--ETLRERL 115 (143)
T ss_dssp HHTT-EEEEESS-----SHHHHHHHHHHHHHCTEEEEEEEECHHH--HHHHHHH
T ss_pred HHcCCCceeccC---cCCHHHHHHHHHHHHHcCCeEEEEEEECCH--HHHHHHH
Confidence 345999999633 233344467778898883355555555554 6788775
No 236
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=26.91 E-value=1.1e+02 Score=20.13 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=32.3
Q ss_pred EEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCC---ccchhhhcc-cccCCeEEE
Q 026306 55 AFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPK---YPGFCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 55 ~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDE---VP~fcvtRq-vtkmP~Iel 108 (240)
-|+.++| +|+-++-.|++..-+| ....||..+ .+.-....+ ..+.|++++
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~~----~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGIDV----PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCCc----eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4677788 8999999999887777 223444422 122234444 668899876
No 237
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=26.90 E-value=41 Score=31.34 Aligned_cols=183 Identities=19% Similarity=0.103 Sum_probs=105.4
Q ss_pred CCcCCCCCcceEEecCHHHHHHHhhcCCcEEEEEeecCC-ccccchHHHHHHHhhhC-CcceEEEEECCCccchhhhcc-
Q 026306 23 GYPKDLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFY-PHVKFMRVECPKYPGFCLTRQ- 99 (240)
Q Consensus 23 gyp~dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYy-PdVlFl~VDVDEVP~fcvtRq- 99 (240)
|-+.-...|.-+.+-+|+-|...|.- .- .+.|.|+|| -|.=+.|+++..|.-=+ -.|+.=.|||-.-|+. --|=
T Consensus 15 ~a~~~~~r~s~~~~~~eenw~~~l~g-ew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgL-sGRF~ 91 (248)
T KOG0913|consen 15 GADVTPRRSSKLTRIDEENWKELLTG-EW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGL-SGRFL 91 (248)
T ss_pred cCCcCccccceeEEecccchhhhhch-HH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecccc-ceeeE
Confidence 33344455556777789999988743 22 356889999 78999999999987653 4588888999888874 2233
Q ss_pred cccCCeEEEeeCccccccccCCCCCCceeeeeEeeeccccccc---hhHHHHHHHhchHHHH---HHhhhcccccccccC
Q 026306 100 RKEYPFIEIFHSPEQASTRERGADPNITKYAVKVLPFNYDLSA---YGFREYFKRQGIRHLQ---KYLKTNSAACTSSAR 173 (240)
Q Consensus 100 vtkmP~Ielw~speqA~~~G~~~d~~itrY~vkv~pfnyd~S~---YGfreffk~~g~~~~~---~~~~~~~~~~~~~~~ 173 (240)
++-.|+| |-||=-+|.-..|+ =-|+-|++...-+.+. .+.+-+| -|.+++.
T Consensus 92 vtaLptI----------------------YHvkDGeFrrysgaRdk~dfisf~~~r~w~~i~p~p~w~~p~S-~~~~~~~ 148 (248)
T KOG0913|consen 92 VTALPTI----------------------YHVKDGEFRRYSGARDKNDFISFEEHREWQSIDPVPEWEKPDS-TEMSSAS 148 (248)
T ss_pred EEecceE----------------------EEeeccccccccCcccchhHHHHHHhhhhhccCCcchhcCCCc-hHHHHHH
Confidence 5666665 33333333322222 3467777666554433 3444444 3555554
Q ss_pred CCcccccccCCCcccCCCCccccccccchhHhHHHHHHHHHHhhhhccccccCCcchhhH
Q 026306 174 SPVQHQTHHDGEKTNTNDLSTNVSDCDASLLGIIFRSFCQIFRSCFCRKDYLFPQDRHLL 233 (240)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (240)
+-++ +-|+-+.-+..|+.-+.-.|+.-+-|+-+-+=|-+---=-|--|-++|-.+..-
T Consensus 149 ~~~k--l~~~~rdl~~edlg~~~w~s~~l~a~v~~~~~~~l~~~~i~~~d~~~p~~~~~~ 206 (248)
T KOG0913|consen 149 SLFK--LEEELKDLGDEDLGLPEWGSYNLFAGVTEFVGEALGLLTIMTTDQGPPGKDGVT 206 (248)
T ss_pred HHHh--hHHHHHhcCchhhcCchhhhhhhhhhHHHHHHHHHhhhhhheecccCCCccCcc
Confidence 4332 233333333456677777777766666443322221111234566776555443
No 238
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=26.85 E-value=66 Score=26.90 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.2
Q ss_pred EEEEeec------CC-ccccchHHHHHHHhhhCCcceEEEEECCCccch
Q 026306 53 VVAFTIR------GN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGF 94 (240)
Q Consensus 53 VV~FTAs------WC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~f 94 (240)
||.+|.+ +| +|...+-.|+++ +|.|-.+||+.=+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~ 44 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGF 44 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHH
Confidence 5667777 88 999999999875 577788999876554
No 239
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=26.83 E-value=78 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=16.9
Q ss_pred ecCHHHHHHHhhcCCcEEEEEeecCC
Q 026306 36 FTSEREFVHILHQGYPVVVAFTIRGN 61 (240)
Q Consensus 36 ItSE~qwD~~L~eGkPVVV~FTAsWC 61 (240)
-.+.++..+.|.+|.|||+.....+-
T Consensus 86 ~~~~~~i~~~i~~G~Pvi~~~~~~~~ 111 (144)
T PF13529_consen 86 DASFDDIKQEIDAGRPVIVSVNSGWR 111 (144)
T ss_dssp TS-HHHHHHHHHTT--EEEEEETTSS
T ss_pred CCcHHHHHHHHHCCCcEEEEEEcccc
Confidence 34566677777889999999986554
No 240
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=26.44 E-value=75 Score=23.01 Aligned_cols=25 Identities=40% Similarity=0.886 Sum_probs=23.1
Q ss_pred ccccccchhHHHHHHHhchHHHHHHh
Q 026306 136 FNYDLSAYGFREYFKRQGIRHLQKYL 161 (240)
Q Consensus 136 fnyd~S~YGfreffk~~g~~~~~~~~ 161 (240)
|+.|++...-++|++.. +..+.+|+
T Consensus 67 F~fD~~~idW~~Y~~~~-~~G~r~yl 91 (92)
T cd09071 67 FNFDIRSIDWDDYFENY-IPGLRKYL 91 (92)
T ss_pred CCCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 78899999999999999 99999986
No 241
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=24.88 E-value=66 Score=29.01 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.2
Q ss_pred CHHHHHHHhhcCCcEEEEEeec
Q 026306 38 SEREFVHILHQGYPVVVAFTIR 59 (240)
Q Consensus 38 SE~qwD~~L~eGkPVVV~FTAs 59 (240)
|.++|+.++...+|||.+|-..
T Consensus 88 sd~~Fd~lFT~DkPViFafHGY 109 (203)
T PF09363_consen 88 SDEEFDALFTKDKPVIFAFHGY 109 (203)
T ss_dssp -HHHHHHHH-SSS-EEEEESSE
T ss_pred CHHHHHHhcCCCCCEEEEcCCC
Confidence 7899999999999999999753
No 242
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=24.72 E-value=1.6e+02 Score=23.06 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=21.6
Q ss_pred CHHHHHHHhhc---CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEE
Q 026306 38 SEREFVHILHQ---GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFM 84 (240)
Q Consensus 38 SE~qwD~~L~e---GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl 84 (240)
.+++.++++++ +..|++.=+..-- .-.-++..++++|++| +++.|+
T Consensus 65 ~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~-~~v~~i 114 (150)
T cd01840 65 TKDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKY-KNVTII 114 (150)
T ss_pred CHHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHC-CCcEEe
Confidence 45666666655 2343332111100 1234556666666666 555443
No 243
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=24.64 E-value=67 Score=22.03 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=32.3
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEEe
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEIF 109 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw 109 (240)
+.-|+...| +|+-.+-+|++..-+| -.+++|..+.-=+... ..+.|.+++-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y------~~~~~~~~~~~~~~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY------EVVEVNPVSRKEIKWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce------EEEECCchhHHHHHHhCCCccCEEEEC
Confidence 345777888 8888888888887776 2234443211002233 6789999875
No 244
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=57 Score=33.25 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=27.7
Q ss_pred CCCCcceEEecCHHHHHHHhhcCCcEEEEEeecCC
Q 026306 27 DLGPSRVIHFTSEREFVHILHQGYPVVVAFTIRGN 61 (240)
Q Consensus 27 dlg~SrVi~ItSE~qwD~~L~eGkPVVV~FTAsWC 61 (240)
...+|+++.++|.++|...|++++.| +|+||
T Consensus 461 ~~rds~~~~v~~~~eF~~aL~~k~ii----laPwc 491 (551)
T KOG4163|consen 461 EKRDSHIVKVNTWEEFVKALDQKKII----LAPWC 491 (551)
T ss_pred HHhhhheeeeeeHHHHHHHhccCCEE----Ecccc
Confidence 45789999999999999999999987 57899
No 245
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=24.09 E-value=1.4e+02 Score=30.39 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=53.3
Q ss_pred cCHHHHHHHhhc-CCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchh----hhcccccCCeEEEeeC
Q 026306 37 TSEREFVHILHQ-GYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFC----LTRQRKEYPFIEIFHS 111 (240)
Q Consensus 37 tSE~qwD~~L~e-GkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fc----vtRqvtkmP~Ielw~s 111 (240)
+-|+.|.+.|.+ |+|.||...-.--.+.--+-..+++..+| ++-++.|+|..+-.-= +++..-++|--|+=-+
T Consensus 167 ~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky--~vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~ 244 (492)
T TIGR02836 167 EAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKY--DVPVLAMDVESMRESDILSVLEEVLYEFPILEINID 244 (492)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHh--CCceEEEEHHHcCHHHHHHHHHHHHhcCCceEEEee
Confidence 348888888877 99999887644312222222346777888 6889999999886543 3344789998888655
Q ss_pred -cccccc
Q 026306 112 -PEQAST 117 (240)
Q Consensus 112 -peqA~~ 117 (240)
|+=-+.
T Consensus 245 ~P~Wve~ 251 (492)
T TIGR02836 245 LPSWVEV 251 (492)
T ss_pred CchHHHh
Confidence 554443
No 246
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.54 E-value=39 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=30.4
Q ss_pred cccchhHHHHHHHhchHHHHHHhhhcccccccccCCCc
Q 026306 139 DLSAYGFREYFKRQGIRHLQKYLKTNSAACTSSARSPV 176 (240)
Q Consensus 139 d~S~YGfreffk~~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (240)
..|+||||++- ..|++.|+++.+...-.+.++...+.
T Consensus 64 Rtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~d~~ 100 (260)
T TIGR01361 64 RTSPYSFQGLG-EEGLKLLRRAADEHGLPVVTEVMDPR 100 (260)
T ss_pred CCCCccccccH-HHHHHHHHHHHHHhCCCEEEeeCChh
Confidence 45667888876 89999999999999988888776663
No 247
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.33 E-value=23 Score=33.60 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=43.8
Q ss_pred cccCCeEEEeeC-ccccccccCCCCCCceeeeeEeeecccc-ccch---------hHHHHHHHhchHHHHH--Hhhhccc
Q 026306 100 RKEYPFIEIFHS-PEQASTRERGADPNITKYAVKVLPFNYD-LSAY---------GFREYFKRQGIRHLQK--YLKTNSA 166 (240)
Q Consensus 100 vtkmP~Ielw~s-peqA~~~G~~~d~~itrY~vkv~pfnyd-~S~Y---------Gfreffk~~g~~~~~~--~~~~~~~ 166 (240)
..+||-|.=+-| ++.|+..+..+..- ...|+++|||-- .+.| -|++.|+++|+...-. .=..-.|
T Consensus 264 ~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIPYN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~a 341 (372)
T PRK11194 264 TVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDA 341 (372)
T ss_pred EEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcchh
Confidence 667888888878 88888887655442 248999999931 1111 1666777777654221 1122356
Q ss_pred ccccccC
Q 026306 167 ACTSSAR 173 (240)
Q Consensus 167 ~~~~~~~ 173 (240)
||.--+.
T Consensus 342 aCGQL~~ 348 (372)
T PRK11194 342 ACGQLAG 348 (372)
T ss_pred cCcCcHh
Confidence 7765443
No 248
>PF11842 DUF3362: Domain of unknown function (DUF3362); InterPro: IPR024560 This domain tends to occur to the C terminus of a radical SAM domain (PF04055 from PFAM) in members of the uncharacterised protein family UPF0313. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=23.13 E-value=28 Score=30.04 Aligned_cols=11 Identities=55% Similarity=1.053 Sum_probs=9.6
Q ss_pred hhcccccCCcC
Q 026306 16 STCKYYTGYPK 26 (240)
Q Consensus 16 ~~~kyytgyp~ 26 (240)
|||.||||+.-
T Consensus 14 aT~MYyTg~nP 24 (150)
T PF11842_consen 14 ATCMYYTGKNP 24 (150)
T ss_pred HHHHHhcCCCC
Confidence 79999999865
No 249
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=22.85 E-value=60 Score=30.17 Aligned_cols=46 Identities=30% Similarity=0.529 Sum_probs=31.5
Q ss_pred ecCHHHHHHHhhc----CCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEEC
Q 026306 36 FTSEREFVHILHQ----GYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVEC 88 (240)
Q Consensus 36 ItSE~qwD~~L~e----GkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDV 88 (240)
.++.+.|.+.+++ |+=+|+ + -.--+.-.+++.|++| |++.|+-+|=
T Consensus 80 ~~~~~~~~~~~~~~a~~g~~lI~--~----~gf~~~d~~~~va~~~-Pd~~F~iid~ 129 (345)
T COG1744 80 SDSEADYERALRALAEDGYDLIF--G----TGFAFSDALEKVAAEY-PDVKFVIIDG 129 (345)
T ss_pred CcchhHHHHHHHHHHhcCCCEEE--E----eccchhhHHHHHHHHC-CCCEEEEecC
Confidence 3347888888864 663332 1 1223445689999999 9999999985
No 250
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=22.50 E-value=87 Score=27.80 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhcccccCCcCCC--CCcceEEecCHHHHHHHh-hcCCcEEEEEeecCC-ccccchHHHHHHHhhhCCcc
Q 026306 6 IFHRMISHLRSTCKYYTGYPKDL--GPSRVIHFTSEREFVHIL-HQGYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHV 81 (240)
Q Consensus 6 ~~~~m~~~lr~~~kyytgyp~dl--g~SrVi~ItSE~qwD~~L-~eGkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdV 81 (240)
+-++...-|+++-||..|.|-+. .++-|-.+.--..=.+.+ .+|--+.|--|..|| |+.-|+ ++-+-|..
T Consensus 30 ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~titvtpcWcy~~etmd------~~~~~p~a 103 (171)
T PF07881_consen 30 MAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTITVTPCWCYGSETMD------MDPNTPKA 103 (171)
T ss_dssp HHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEEEESS---HHHHS---------TTS-EE
T ss_pred HHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEEEEeeeecchhhhc------cCcCCCcc
Confidence 45778889999999999998653 222222222222233333 448888888888899 775543 33333443
Q ss_pred eEEEEECCCccchhhhc------ccccCCeEEEee
Q 026306 82 KFMRVECPKYPGFCLTR------QRKEYPFIEIFH 110 (240)
Q Consensus 82 lFl~VDVDEVP~fcvtR------qvtkmP~Ielw~ 110 (240)
...-=- .|.||...-= +-+-+|+--||-
T Consensus 104 iwgfng-terPGaVyLaAa~aa~~Q~Gip~f~IyG 137 (171)
T PF07881_consen 104 IWGFNG-TERPGAVYLAAALAAHNQKGIPAFRIYG 137 (171)
T ss_dssp EEE----SSS-HHHHHHHHHHHHHHCT---EEEE-
T ss_pred EEeecC-CCCCcHHHHHHHHHHHhcCCCcceeecc
Confidence 322222 2888863321 256788888887
No 251
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=22.44 E-value=85 Score=26.60 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=34.5
Q ss_pred cEEEEEeecCCc-cccchHHHHHHHhhhC--CcceEEEEECCCccch
Q 026306 51 PVVVAFTIRGNL-TKHLDRVLEEAAAEFY--PHVKFMRVECPKYPGF 94 (240)
Q Consensus 51 PVVV~FTAsWCP-cryMkPvFEELAAeYy--PdVlFl~VDVDEVP~f 94 (240)
-.||+|--.-.| =.-+.+.+.++|.++- |+.-|++||=|+.|-.
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPll 68 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLL 68 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchh
Confidence 345666555553 3678899999999996 7799999999999853
No 252
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=22.28 E-value=2.1e+02 Score=26.41 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCcEEEEEeec--CC----ccccchHHHHHHHhhhC---CcceEEEEECCCccchhh
Q 026306 40 REFVHILHQGYPVVVAFTIR--GN----LTKHLDRVLEEAAAEFY---PHVKFMRVECPKYPGFCL 96 (240)
Q Consensus 40 ~qwD~~L~eGkPVVV~FTAs--WC----PcryMkPvFEELAAeYy---PdVlFl~VDVDEVP~fcv 96 (240)
++..++..+|.=.||.|-+- -| |+..|+|.|.++..+-. =++..+++.++.-. ..+
T Consensus 158 reL~~~~~~G~ra~vlf~v~r~d~~~F~P~~e~Dp~fa~~l~~A~~~GVev~~~~~~~~~~~-i~~ 222 (235)
T COG1489 158 RELERLAKEGYRAVVLFLVLRSDITRFSPNREIDPKFAELLREAIKAGVEVLAYRFEVDGEG-IRL 222 (235)
T ss_pred HHHHHHHHcCCceEEEEEEecCCCcEECcccccCHHHHHHHHHHHHcCCEEEEEEEEEcccc-eEe
Confidence 34455556685555555443 23 99999999998876664 24777788887663 444
No 253
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=21.96 E-value=2.8e+02 Score=27.48 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=52.5
Q ss_pred CcceEEecCHHHHHHHhh-cCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEE
Q 026306 30 PSRVIHFTSEREFVHILH-QGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIE 107 (240)
Q Consensus 30 ~SrVi~ItSE~qwD~~L~-eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Ie 107 (240)
.-.|..|+++.+....-+ +..+-||-|.-+- .+.+. ..|||+|-+|+|-|+|+-+= | .=++|+ --||--|+
T Consensus 145 edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~-~s~~y-k~FeeAAe~F~p~IkFfAtf-d----~~vAk~L~lK~nev~ 217 (383)
T PF01216_consen 145 EDPVEIINNKHELKAFERIEDDIKLIGYFKSE-DSEHY-KEFEEAAEHFQPYIKFFATF-D----KKVAKKLGLKLNEVD 217 (383)
T ss_dssp SSSEEEE-SHHHHHHHHH--SS-EEEEE-SST-TSHHH-HHHHHHHHHCTTTSEEEEE--S----HHHHHHHT-STT-EE
T ss_pred ccchhhhcChhhhhhhhhcccceeEEEEeCCC-CcHHH-HHHHHHHHhhcCceeEEEEe-c----chhhhhcCcccccee
Confidence 445888999988866554 3468888765443 34454 46899999999999999872 2 235565 34688888
Q ss_pred EeeC--cccccccc
Q 026306 108 IFHS--PEQASTRE 119 (240)
Q Consensus 108 lw~s--peqA~~~G 119 (240)
.|.- .+....+|
T Consensus 218 fyepF~~~pi~ip~ 231 (383)
T PF01216_consen 218 FYEPFMDEPITIPG 231 (383)
T ss_dssp EE-TTSSSEEEESS
T ss_pred eeccccCCCccCCC
Confidence 8876 55555555
No 254
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=52 Score=30.13 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=16.5
Q ss_pred ccchHHHHHHHhhhCCcce
Q 026306 64 KHLDRVLEEAAAEFYPHVK 82 (240)
Q Consensus 64 ryMkPvFEELAAeYyPdVl 82 (240)
.=+++.|.+||.+||||+.
T Consensus 58 ~EIK~Af~~LaKkyHPD~n 76 (288)
T KOG0715|consen 58 SEIKSAFRKLAKKYHPDVN 76 (288)
T ss_pred HHHHHHHHHHHHhhCCCCC
Confidence 3589999999999999864
No 255
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=21.76 E-value=1.2e+02 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCC-cceEEEEECCCc
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYP-HVKFMRVECPKY 91 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyP-dVlFl~VDVDEV 91 (240)
|++++|.=+|+-| .+..+ .-|++|-.+|.+ ....+-.=||..
T Consensus 21 Gkv~LIVNvAs~Cg~t~qy-~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 21 GKVLLIVNVASKCGYTKQY-KQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TSEEEEEEEESSSTTHHHH-HHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCEEEEEecccccCCcccc-HHHHHHHHHHhcCCeEEEeeehHHh
Confidence 9999999999988 77744 489999999963 345555455543
No 256
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=21.38 E-value=1.7e+02 Score=21.10 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=33.1
Q ss_pred EEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEE
Q 026306 53 VVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEI 108 (240)
Q Consensus 53 VV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Iel 108 (240)
+..|+...| +|.-.+=.|++..-+| .+..||..+-+.-..+.+ ..+.|.+++
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~----~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPH----EVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCC----eEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455667777 8887777777776666 344566555433334444 667888875
No 257
>PLN02541 uracil phosphoribosyltransferase
Probab=21.38 E-value=5.4e+02 Score=23.36 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=41.7
Q ss_pred cccCCcCCCCC-cceEEecCH--------HHHHHHhhcCCc----EEEEEeecCCccccchHHHHHHHhhhCCcceEEEE
Q 026306 20 YYTGYPKDLGP-SRVIHFTSE--------REFVHILHQGYP----VVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRV 86 (240)
Q Consensus 20 yytgyp~dlg~-SrVi~ItSE--------~qwD~~L~eGkP----VVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~V 86 (240)
||.-.|.+..+ .+|+-++-. .-.+.+...|.+ ++|..-|+ ..=++.+++.| |++..+..
T Consensus 146 yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias-------~~Gl~~i~~~f-P~v~I~ta 217 (244)
T PLN02541 146 YLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAA-------PPALKKLSEKF-PGLHVYAG 217 (244)
T ss_pred eeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEEC-------HHHHHHHHHHC-cCCEEEEE
Confidence 67777887764 467776532 223333344644 44444332 36799999999 99999999
Q ss_pred ECCC
Q 026306 87 ECPK 90 (240)
Q Consensus 87 DVDE 90 (240)
-+|+
T Consensus 218 ~ID~ 221 (244)
T PLN02541 218 IIDE 221 (244)
T ss_pred EECc
Confidence 9998
No 258
>PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms. The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process
Probab=21.02 E-value=1.1e+02 Score=22.68 Aligned_cols=27 Identities=37% Similarity=0.786 Sum_probs=23.9
Q ss_pred eccccccchhHHHHHHHhchHHHHHHhh
Q 026306 135 PFNYDLSAYGFREYFKRQGIRHLQKYLK 162 (240)
Q Consensus 135 pfnyd~S~YGfreffk~~g~~~~~~~~~ 162 (240)
-||.|++.-.-+||++.+ +.-+.||+-
T Consensus 66 ~F~fD~~~idW~~Y~~~~-~~G~rkyll 92 (94)
T PF03015_consen 66 IFNFDIRSIDWEEYFRNY-IPGIRKYLL 92 (94)
T ss_pred eecCCCCCCCHHHHHHHH-HHHHHHHHh
Confidence 478899999999999999 999999973
No 259
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.88 E-value=1.9e+02 Score=25.88 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHhhcccccCCcCCCCCcceEEecCHHHHHHHhhcCCcEEEE
Q 026306 10 MISHLRSTCKYYTGYPKDLGPSRVIHFTSEREFVHILHQGYPVVVA 55 (240)
Q Consensus 10 m~~~lr~~~kyytgyp~dlg~SrVi~ItSE~qwD~~L~eGkPVVV~ 55 (240)
|..-+=++.+.+.. +++..-.+++.++..+.+++.+++|++||+.
T Consensus 74 ~g~~~~E~~~~~~~-~~~~~~~~~~~~~g~e~l~~~~~~gkgvI~l 118 (305)
T PRK08734 74 TARQALEVLRTWTH-PPAENLARLRQRHGQELYDAALASGRGVIVA 118 (305)
T ss_pred HHHHHHHHHHhcCC-ChHHHhcceEEecCHHHHHHHHHcCCCEEEE
Confidence 33344455555432 3332345578899999999999999998865
No 260
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=20.72 E-value=2.2e+02 Score=21.80 Aligned_cols=45 Identities=29% Similarity=0.422 Sum_probs=31.2
Q ss_pred cCCcEEEEEeecCCccccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc
Q 026306 48 QGYPVVVAFTIRGNLTKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ 99 (240)
Q Consensus 48 eGkPVVV~FTAsWCPcryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq 99 (240)
+|..||++.+. ....+...+.++| +...+.++.++++ +..+..|-
T Consensus 71 ~~~~vVid~~~---~~~~~r~~~~~~~--~~~~~~~v~l~~~--~~~~~~R~ 115 (150)
T cd02021 71 AGEGVVVACSA---LKRIYRDILRGGA--ANPRVRFVHLDGP--REVLAERL 115 (150)
T ss_pred CCCCEEEEecc---ccHHHHHHHHhcC--CCCCEEEEEEECC--HHHHHHHH
Confidence 58889988554 3455667788887 3246778888887 56777776
No 261
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=20.48 E-value=2.3e+02 Score=22.95 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCcEEEEEeecCCc---cccchHHHHHHHhhhCCcceEEEEECCCccchhhhcc-cccCCeEEEeeCccc
Q 026306 39 EREFVHILHQGYPVVVAFTIRGNL---TKHLDRVLEEAAAEFYPHVKFMRVECPKYPGFCLTRQ-RKEYPFIEIFHSPEQ 114 (240)
Q Consensus 39 E~qwD~~L~eGkPVVV~FTAsWCP---cryMkPvFEELAAeYyPdVlFl~VDVDEVP~fcvtRq-vtkmP~Ielw~speq 114 (240)
+++.|..+.++...|+-|+-.+-. +-=..=+|=||...|-..+..--|+ ++.-..+-.|= +.+.|+.=+|++++-
T Consensus 16 ~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-~~~e~~L~~r~gv~~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 16 ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-RAAERALAARFGVRRWPALVFFRDGRY 94 (107)
T ss_dssp CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-HHHHHHHHHHHT-TSSSEEEEEETTEE
T ss_pred hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-chhHHHHHHHhCCccCCeEEEEECCEE
Confidence 566777787766666666655442 2333458899999995556666666 55555677774 999999999999988
Q ss_pred cccccCCCC
Q 026306 115 ASTRERGAD 123 (240)
Q Consensus 115 A~~~G~~~d 123 (240)
-.++.|+.|
T Consensus 95 lG~i~gi~d 103 (107)
T PF07449_consen 95 LGAIEGIRD 103 (107)
T ss_dssp EEEEESSST
T ss_pred EEEecCeec
Confidence 888888876
No 262
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=20.20 E-value=1.5e+02 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=28.0
Q ss_pred CCcEEEEEeecCC-ccccchHHHHHHHhhhCCcceEEEEE
Q 026306 49 GYPVVVAFTIRGN-LTKHLDRVLEEAAAEFYPHVKFMRVE 87 (240)
Q Consensus 49 GkPVVV~FTAsWC-PcryMkPvFEELAAeYyPdVlFl~VD 87 (240)
++.+|+.||=.-| +|+-+.+-+.++...- +|.+..+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g--~V~v~~ip 154 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG--KVQLRHIL 154 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC--ceEEEEEe
Confidence 6788999999999 9998888877765543 46655553
Done!