Query 026307
Match_columns 240
No_of_seqs 107 out of 131
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c8l_A FTSZ-like protein of un 100.0 5.7E-57 1.9E-61 364.9 11.9 116 119-240 3-119 (122)
2 2cq1_A PTB-like protein L; RRM 73.6 3.5 0.00012 30.2 3.9 37 182-223 22-59 (101)
3 3r27_A HnRNP L, heterogeneous 67.8 3.8 0.00013 30.9 3.0 37 183-224 29-66 (100)
4 1wex_A Hypothetical protein (r 62.0 7.4 0.00025 28.5 3.6 36 183-223 23-59 (104)
5 2dgu_A Heterogeneous nuclear r 50.2 6.3 0.00022 27.6 1.4 27 183-209 19-46 (103)
6 1s79_A Lupus LA protein; RRM, 49.4 12 0.00043 27.0 3.0 26 183-208 19-45 (103)
7 3s7r_A Heterogeneous nuclear r 49.3 14 0.00047 24.8 3.0 26 183-208 19-45 (87)
8 2kwa_A Kinase A inhibitor; bac 49.3 7.5 0.00026 28.6 1.8 43 120-167 14-56 (101)
9 1sjq_A Polypyrimidine tract-bi 46.9 10 0.00035 28.6 2.3 37 182-223 23-60 (105)
10 2wkn_A Formamidase, gamma-lact 46.3 18 0.00062 33.9 4.3 33 121-153 303-339 (409)
11 2ad9_A Polypyrimidine tract-bi 45.6 18 0.00061 27.7 3.4 38 182-224 38-76 (119)
12 2cpf_A RNA binding motif prote 44.0 18 0.00062 24.7 3.0 26 183-208 13-39 (98)
13 4fei_A Heat shock protein-rela 41.5 14 0.00049 26.9 2.3 45 162-207 23-92 (102)
14 2do0_A HnRNP M, heterogeneous 41.1 21 0.00071 25.1 3.0 27 183-209 23-50 (114)
15 3zzy_A Polypyrimidine tract-bi 41.0 29 0.00098 27.2 4.0 26 183-208 36-62 (130)
16 3ulh_A THO complex subunit 4; 38.6 24 0.00083 24.5 3.0 27 183-209 37-64 (107)
17 2cqc_A Arginine/serine-rich sp 37.3 27 0.00094 23.5 3.0 26 183-208 23-49 (95)
18 2dgt_A RNA-binding protein 30; 36.2 18 0.0006 24.7 1.9 27 183-209 18-45 (92)
19 2dnq_A RNA-binding protein 4B; 35.7 24 0.00083 23.9 2.6 26 183-208 16-42 (90)
20 1whx_A Hypothetical protein ri 35.6 18 0.00062 26.1 2.0 26 183-208 18-44 (111)
21 1wf0_A TDP-43, TAR DNA-binding 32.8 37 0.0013 22.8 3.1 37 183-223 13-50 (88)
22 3f6g_B Alpha-isopropylmalate s 32.5 28 0.00097 27.0 2.8 17 136-152 104-120 (127)
23 3lqv_A PRE-mRNA branch site pr 32.1 40 0.0014 23.7 3.3 28 183-210 16-44 (115)
24 4fxv_A ELAV-like protein 1; RN 31.9 27 0.00094 24.8 2.4 26 183-208 27-53 (99)
25 4f25_A Polyadenylate-binding p 30.1 31 0.0011 24.8 2.5 26 183-208 13-39 (115)
26 2dnm_A SRP46 splicing factor; 29.8 27 0.00091 24.2 2.0 26 183-208 21-47 (103)
27 1owx_A Lupus LA protein, SS-B, 29.7 31 0.001 26.9 2.5 26 186-211 30-56 (121)
28 2fy1_A RNA-binding motif prote 29.7 56 0.0019 23.6 3.8 27 183-209 15-42 (116)
29 3s8s_A Histone-lysine N-methyl 29.6 40 0.0014 24.5 3.0 26 183-208 14-40 (110)
30 1x4e_A RNA binding motif, sing 29.5 51 0.0017 21.8 3.3 26 183-208 13-39 (85)
31 2qtd_A Uncharacterized protein 29.2 30 0.001 24.9 2.3 19 6-24 15-35 (105)
32 2dnp_A RNA-binding protein 14; 28.6 23 0.00078 24.0 1.4 27 183-209 17-44 (90)
33 1x4d_A Matrin 3; structural ge 28.3 31 0.0011 25.4 2.2 27 183-209 23-51 (102)
34 2la4_A Nuclear and cytoplasmic 28.2 39 0.0013 23.2 2.6 25 183-207 35-60 (101)
35 3pgw_A U1-A; protein-RNA compl 28.1 36 0.0012 27.4 2.7 27 183-209 215-242 (282)
36 2wfb_A Putative uncharacterize 27.9 31 0.0011 25.4 2.2 19 6-24 19-39 (120)
37 1p1t_A Cleavage stimulation fa 27.8 40 0.0014 23.1 2.6 26 183-208 16-42 (104)
38 1p90_A NAFY protein, hypotheti 27.6 32 0.0011 27.0 2.3 19 6-24 19-39 (145)
39 2cpd_A Apobec-1 stimulating pr 27.5 42 0.0014 23.0 2.7 27 183-209 23-52 (99)
40 2d9p_A Polyadenylate-binding p 27.5 56 0.0019 22.5 3.4 27 183-209 23-50 (103)
41 1why_A Hypothetical protein ri 27.2 42 0.0014 22.9 2.6 27 183-209 25-52 (97)
42 1x4c_A Splicing factor, argini 27.2 40 0.0014 23.8 2.6 27 183-209 23-50 (108)
43 2cq0_A Eukaryotic translation 26.9 57 0.0019 22.4 3.3 26 183-208 23-49 (103)
44 3oep_A Putative uncharacterize 26.7 1.2E+02 0.0042 29.0 6.5 78 121-212 3-88 (494)
45 3d2w_A TAR DNA-binding protein 26.5 33 0.0011 23.8 2.0 37 183-223 19-56 (89)
46 2d3o_1 Trigger factor, TF; rib 26.4 44 0.0015 25.1 2.8 29 133-161 18-46 (112)
47 1gme_A Heat shock protein 16.9 26.3 27 0.00094 27.4 1.7 25 183-208 112-136 (151)
48 4eld_A MJ16.5-P1, small heat s 26.2 47 0.0016 26.0 3.1 25 183-208 125-149 (161)
49 1eo1_A Hypothetical protein MT 26.0 37 0.0013 25.1 2.3 19 6-24 15-35 (124)
50 2cq3_A RNA-binding protein 9; 25.9 56 0.0019 22.5 3.1 27 183-209 23-50 (103)
51 2dnh_A Bruno-like 5, RNA bindi 25.7 54 0.0019 22.5 3.0 27 183-209 23-50 (105)
52 1sjr_A Polypyrimidine tract-bi 25.6 55 0.0019 26.7 3.5 66 141-209 11-81 (164)
53 2jvo_A Nucleolar protein 3; nu 25.3 51 0.0017 23.6 2.9 25 183-207 39-64 (108)
54 2kvi_A Nuclear polyadenylated 25.0 54 0.0018 22.5 2.9 26 183-208 18-45 (96)
55 2nsc_A Trigger factor, TF; cha 24.9 43 0.0015 25.0 2.5 28 134-161 20-47 (109)
56 1x4a_A Splicing factor, argini 24.7 58 0.002 22.7 3.0 38 183-222 30-68 (109)
57 1x4b_A Heterogeneous nuclear r 24.6 47 0.0016 23.4 2.6 39 183-223 35-77 (116)
58 1rdu_A Conserved hypothetical 24.5 37 0.0013 24.7 2.0 19 6-24 16-36 (116)
59 2dnz_A Probable RNA-binding pr 24.3 62 0.0021 21.7 3.0 27 183-209 13-40 (95)
60 2ii1_A Acetamidase; 10172637, 24.2 44 0.0015 30.0 2.8 25 123-152 225-249 (301)
61 3md1_A Nuclear and cytoplasmic 24.2 62 0.0021 21.1 2.9 26 183-208 9-35 (83)
62 2do4_A Squamous cell carcinoma 23.9 62 0.0021 22.1 3.0 27 183-209 25-52 (100)
63 2dgs_A DAZ-associated protein 23.9 52 0.0018 22.5 2.6 26 183-208 18-44 (99)
64 2ytc_A PRE-mRNA-splicing facto 23.8 52 0.0018 21.7 2.5 26 183-208 20-46 (85)
65 2f4l_A Acetamidase, putative; 23.8 45 0.0015 30.0 2.8 25 123-152 227-251 (297)
66 1mg4_A Doublecortin, doublecor 23.6 1.8E+02 0.0063 22.4 6.0 49 176-232 32-90 (113)
67 3p5t_L Cleavage and polyadenyl 23.5 49 0.0017 22.4 2.4 26 183-208 9-37 (90)
68 2cq2_A Hypothetical protein LO 23.4 22 0.00076 27.2 0.7 26 183-208 35-61 (114)
69 2kpq_A Uncharacterized protein 23.3 36 0.0012 25.9 1.8 16 138-153 50-65 (100)
70 2lkz_A RNA-binding protein 5; 23.3 33 0.0011 24.6 1.5 39 183-223 17-61 (95)
71 3ucg_A Polyadenylate-binding p 23.2 53 0.0018 21.7 2.5 26 183-208 14-40 (89)
72 2khc_A Testis-specific RNP-typ 23.1 58 0.002 23.0 2.8 26 183-208 48-74 (118)
73 2xs2_A Deleted in azoospermia- 23.1 73 0.0025 21.8 3.3 41 183-223 17-58 (102)
74 2cq4_A RNA binding motif prote 23.0 53 0.0018 23.1 2.6 26 183-208 33-59 (114)
75 2cqg_A TDP-43, TAR DNA-binding 23.0 53 0.0018 22.6 2.5 27 183-209 23-50 (103)
76 2yx6_A Hypothetical protein PH 22.9 46 0.0016 24.5 2.3 19 6-24 16-36 (121)
77 2y1y_A Alpha-crystallin B chai 22.7 31 0.001 24.6 1.2 23 183-206 57-80 (90)
78 2ywk_A Putative RNA-binding pr 22.6 55 0.0019 22.0 2.5 26 183-208 24-50 (95)
79 2cpj_A Non-POU domain-containi 22.4 69 0.0024 21.9 3.0 26 183-208 23-49 (99)
80 2e5h_A Zinc finger CCHC-type a 22.3 70 0.0024 21.4 3.0 26 183-208 24-50 (94)
81 2hvz_A Splicing factor, argini 22.3 52 0.0018 22.6 2.3 37 183-223 8-45 (101)
82 2phc_B Uncharacterized protein 22.3 45 0.0015 28.5 2.4 76 121-210 9-94 (225)
83 1x5o_A RNA binding motif, sing 22.0 81 0.0028 22.1 3.4 27 183-209 33-60 (114)
84 2dhg_A TRNA selenocysteine ass 22.0 54 0.0019 22.5 2.4 26 183-208 17-44 (104)
85 3bs9_A Nucleolysin TIA-1 isofo 21.9 59 0.002 21.4 2.5 26 183-208 14-40 (87)
86 2dgv_A HnRNP M, heterogeneous 21.9 56 0.0019 21.8 2.4 26 183-208 16-42 (92)
87 2e5i_A Heterogeneous nuclear r 21.9 99 0.0034 23.6 4.1 33 173-208 26-59 (124)
88 2dh8_A DAZ-associated protein 21.8 55 0.0019 22.6 2.4 27 183-209 24-51 (105)
89 3fau_A NEDD4-binding protein 2 21.5 60 0.0021 22.8 2.6 12 131-142 3-14 (82)
90 2dgo_A Cytotoxic granule-assoc 21.4 58 0.002 22.8 2.5 26 183-208 23-49 (115)
91 2pcs_A Conserved protein; stru 21.3 93 0.0032 22.8 3.7 38 170-210 2-44 (162)
92 3l1e_A Alpha-crystallin A chai 20.9 26 0.00091 25.9 0.6 25 183-208 63-88 (106)
93 1p9y_A Trigger factor, TF; alp 20.9 56 0.0019 24.8 2.5 28 134-161 23-50 (121)
94 2kxn_B Transformer-2 protein h 20.8 71 0.0024 23.7 3.0 26 183-208 54-80 (129)
95 2cpz_A CUG triplet repeat RNA- 20.7 53 0.0018 23.2 2.2 26 183-208 33-59 (115)
96 2cqi_A Nucleolysin TIAR; RNA r 20.5 45 0.0016 22.9 1.7 26 183-208 23-49 (103)
97 2zqe_A MUTS2 protein; alpha/be 20.3 49 0.0017 23.9 1.9 36 131-167 7-43 (83)
98 1uaw_A Mouse-musashi-1; RNP-ty 20.3 56 0.0019 21.0 2.0 42 183-224 8-51 (77)
99 2lxi_A RNA-binding protein 10; 20.2 12 0.0004 26.2 -1.4 25 183-207 9-35 (91)
No 1
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=100.00 E-value=5.7e-57 Score=364.93 Aligned_cols=116 Identities=40% Similarity=0.622 Sum_probs=112.2
Q ss_pred CceEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCC-CCCCeEEEEEEeecCCCcccccHHHHhhhcC
Q 026307 119 PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGV-SFEQMKLLIKLGVPHSLQQLLDIERVKSVFP 197 (240)
Q Consensus 119 ~mKRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~-d~~~MkV~VkIGVP~~~Pe~VD~eaVkavfP 197 (240)
.|||||||||||+|||||||||||+|||||||||||||++++ ++|+ ++++|+|+|+||||+ ||+||.|+||++||
T Consensus 3 ~~kr~~iEmGmG~DlhGqD~TkAA~RAvrDAI~~nslp~~~~--~~g~~~~~~M~V~V~vgVp~--pe~vD~e~v~a~lP 78 (122)
T 3c8l_A 3 ARKRLIIEMGMGIDQHGQEPTIAASRAVRNAIAHNALPGVWE--VAGLSHPNEMIIEVQVAVPY--PEQVREEEVLAVLP 78 (122)
T ss_dssp CEEEEEEEEEEEEESSSSCHHHHHHHHHHHHHTTCCCSSHHH--HHTCSSGGGSEEEEEEEESS--GGGCCHHHHHTTSC
T ss_pred ccEEEEEEecccccccCccHHHHHHHHHHHHHhhhcchhHHH--HCCCCChhceEEEEEEeCCC--hhhcCHHHHHhhCC
Confidence 469999999999999999999999999999999999999994 6887 799999999999999 99999999999999
Q ss_pred CCceeeEEEEcCCcccccCceeccCCCCCCcEEEEEEEEEEeC
Q 026307 198 YGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIVNAAVYVGY 240 (240)
Q Consensus 198 YG~v~tVeVV~GGL~v~sGI~ipe~GDknD~~vIAnAAV~Vgy 240 (240)
||++ +|+||+|||++ |||+||+++|+||++|||||||+|+|
T Consensus 79 yG~~-~v~vv~GGl~~-sGi~i~~~~d~~d~~~Ia~AaV~V~~ 119 (122)
T 3c8l_A 79 FGRK-TLTVESGGMIV-QGRAIPELNDKNDEMLIAIAAVTVLI 119 (122)
T ss_dssp SSEE-EEEEEECBEEE-ECCCCGGGTCCSSEEEEEEEEEEEEE
T ss_pred CCce-EEEEEeCCccc-ccccccccCCCCCcEEEEEEEEEEec
Confidence 9997 99999999999 99999999999999999999999997
No 2
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.65 E-value=3.5 Score=30.22 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCC
Q 026307 182 SLQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 182 ~~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
.||+.++.+.|+++| |||++..|.++.+ .|.+.=++.
T Consensus 22 nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~ 59 (101)
T 2cq1_A 22 KLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELA 59 (101)
T ss_dssp SCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEES
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEEC
Confidence 368899999999998 7999988988775 455554554
No 3
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=67.84 E-value=3.8 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=28.9
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCCC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELGD 224 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~GD 224 (240)
||+.++.+.|+++| |||++.+|.++. ..|.+.=++.+
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~ 66 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFED 66 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESS
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECC
Confidence 68999999999998 899998888875 24555555543
No 4
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.95 E-value=7.4 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=27.5
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
||+.++.+.|+++| +||++..|.++.+ .|.+.=++.
T Consensus 23 Lp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~ 59 (104)
T 1wex_A 23 LCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFE 59 (104)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEES
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEEC
Confidence 68899999999998 6999988888763 354444443
No 5
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=50.23 E-value=6.3 Score=27.64 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||.+..|.+..|
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~~v~~~~~ 46 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLERVKKLKD 46 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 57789999999998 6999988887754
No 6
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.35 E-value=12 Score=27.02 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||.+..|.++.
T Consensus 19 Lp~~~te~~L~~~F~~~G~v~~v~i~~ 45 (103)
T 1s79_A 19 FPTDATLDDIKEWLEDKGQVLNIQMRR 45 (103)
T ss_dssp CCTTCCHHHHHHHHHTSSCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHhhcCCEEEEEEEE
Confidence 57789999999999 799998888875
No 7
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=49.31 E-value=14 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.4
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||++..+.++.
T Consensus 19 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 45 (87)
T 3s7r_A 19 LSWDTSKKDLKDYFTKFGEVVDCTIKM 45 (87)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEee
Confidence 57789999999999 699998888874
No 8
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=49.30 E-value=7.5 Score=28.59 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=31.7
Q ss_pred ceEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCCC
Q 026307 120 MKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVS 167 (240)
Q Consensus 120 mKRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~d 167 (240)
=+-++||+|=.+|+- +...+.|..++|+..-+|++.. .+||..
T Consensus 14 D~allVefg~~id~~----~~~~v~al~~~L~~~~~~Gv~E-iVPa~~ 56 (101)
T 2kwa_A 14 DSAMMIRFGEEINEQ----VNGIVHAAAAYIEEQPFPGFIE-CIPAFT 56 (101)
T ss_dssp SSEEEEECCCSSCHH----HHHHHHHHHHHHHHSCCTTEEE-EEECSS
T ss_pred CcEEEEEECCcCCHH----HHHHHHHHHHHHHccCCCCeEE-eccCce
Confidence 356899998554432 2445667889999999999998 889844
No 9
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.89 E-value=10 Score=28.61 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCC
Q 026307 182 SLQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 182 ~~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
.||+.++.+.|+++| |||++.+|.++.+ .|.+.=++.
T Consensus 23 nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~ 60 (105)
T 1sjq_A 23 KLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMN 60 (105)
T ss_dssp SCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEES
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEEC
Confidence 368899999999998 5999989998875 455555554
No 10
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=46.35 E-value=18 Score=33.86 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=27.0
Q ss_pred eEEEEEeeccccCCC----CCHHHHHHHHHHhHHhhC
Q 026307 121 KLLFVEMGVGYDQHG----QDVTAAAMRACRDAISSN 153 (240)
Q Consensus 121 KRlfIEmGMG~DlHG----QD~TKAA~RAVrDAI~hN 153 (240)
...++-+|+..|++| -|.+.|+++|+++||+.=
T Consensus 303 ~~~li~~G~~~d~~g~~~~ld~~~A~r~A~~~~i~~L 339 (409)
T 2wkn_A 303 KDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYL 339 (409)
T ss_dssp CCEEEEEEESBCTTCCBCSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeeccccccccccccHHHHHHHHHHHHHHHH
Confidence 455666999999866 567999999999999873
No 11
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.57 E-value=18 Score=27.72 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=29.2
Q ss_pred CCcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCCC
Q 026307 182 SLQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELGD 224 (240)
Q Consensus 182 ~~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~GD 224 (240)
.||+.++.+.|+++| |||++..|.++.+ .|.+.=++.+
T Consensus 38 NLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~ 76 (119)
T 2ad9_A 38 KLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNT 76 (119)
T ss_dssp SCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECC
Confidence 368899999999987 5999988998864 4555555543
No 12
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.03 E-value=18 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.5
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||.+..|.+..
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~v~i~~ 39 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIKSCTISK 39 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 57889999999999 699988888874
No 13
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=41.55 E-value=14 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.5
Q ss_pred ccCCCCCCCeEEEEE-----Eee------------------c--CCCcccccHHHHhhhcCCCceeeEEEE
Q 026307 162 SIPGVSFEQMKLLIK-----LGV------------------P--HSLQQLLDIERVKSVFPYGKILDVEVV 207 (240)
Q Consensus 162 ~IpG~d~~~MkV~Vk-----IGV------------------P--~~~Pe~VD~eaVkavfPYG~v~tVeVV 207 (240)
.+||++.+++.|+++ |-- . -.||+.||.+.++|.|=-|- ++|++-
T Consensus 23 ~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~Gv-L~I~lp 92 (102)
T 4fei_A 23 DVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGV-LTVRFE 92 (102)
T ss_dssp ECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTE-EEEEEE
T ss_pred ECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCE-EEEEEE
Confidence 568888888887763 210 0 02688899998888776665 455543
No 14
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.11 E-value=21 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=22.6
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||++..|.+...
T Consensus 23 lp~~~~~~~l~~~f~~~G~i~~~~i~~~ 50 (114)
T 2do0_A 23 LDYKVGWKKLKEVFSMAGVVVRADILED 50 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 58889999999999 5999878887653
No 15
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=41.02 E-value=29 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|+++| +||++.+|.+..
T Consensus 36 L~~~vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 36 LFYPVTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp CCSCCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHhCcCCEEEEEEEc
Confidence 57889999999999 799998888765
No 16
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=38.64 E-value=24 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|++.| +||.+..|+++..
T Consensus 37 lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 64 (107)
T 3ulh_A 37 LDFGVSDADIQELFAEFGTLKKAAVHYD 64 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 58889999999998 6999888888743
No 17
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.26 E-value=27 Score=23.48 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||.+..|.++.
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~ 49 (95)
T 2cqc_A 23 LSLYTTERDLREVFSKYGPIADVSIVY 49 (95)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 57789999999998 599988888864
No 18
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.19 E-value=18 Score=24.68 Aligned_cols=27 Identities=15% Similarity=0.518 Sum_probs=23.0
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|++.| +||++..+.+..|
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 57789999999998 5999988888755
No 19
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.69 E-value=24 Score=23.85 Aligned_cols=26 Identities=27% Similarity=0.694 Sum_probs=22.3
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|++.| +||++..+.+..
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 58889999999998 599998888874
No 20
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.56 E-value=18 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.9
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|+++| +||.+..|.+..
T Consensus 18 Lp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 18 LPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 57889999999998 899987777653
No 21
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.82 E-value=37 Score=22.84 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=27.1
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcCCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
||..++.+.|++.|- ||.+..|.++.- +.|.+.-++.
T Consensus 13 Lp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~ 50 (88)
T 1wf0_A 13 CTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFA 50 (88)
T ss_dssp CCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECS
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEEC
Confidence 588999999999995 999988888642 3455444443
No 22
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=32.55 E-value=28 Score=27.00 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHhHHhh
Q 026307 136 QDVTAAAMRACRDAISS 152 (240)
Q Consensus 136 QD~TKAA~RAVrDAI~h 152 (240)
.|++.|+.||+-|||.+
T Consensus 104 ~DIi~AS~~A~~~alNr 120 (127)
T 3f6g_B 104 PDQTVAAVHATEKMLNQ 120 (127)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 79999999999999976
No 23
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=32.08 E-value=40 Score=23.72 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.6
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcCC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDGG 210 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~GG 210 (240)
+|..++.+.|++.| +||.+..|.+..-|
T Consensus 16 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 44 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPIRQIRVGNTP 44 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEECST
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence 58889999999998 69999888887544
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=31.90 E-value=27 Score=24.75 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||++..+.++.
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~~v~i~~ 53 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVESAKLIR 53 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEEEeEeee
Confidence 68899999999998 599998888864
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=30.15 E-value=31 Score=24.78 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.5
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|++.|= ||++..|+++.
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~ 39 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVC 39 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEee
Confidence 688999999999995 99998888864
No 26
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.81 E-value=27 Score=24.18 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||++..|.+..
T Consensus 21 Lp~~~t~~~l~~~f~~~G~i~~v~i~~ 47 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEKYGRVGDVYIPR 47 (103)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCB
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 58889999999998 599987787764
No 27
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.71 E-value=31 Score=26.95 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred cccHHHHhhhc-CCCceeeEEEEcCCc
Q 026307 186 LLDIERVKSVF-PYGKILDVEVVDGGL 211 (240)
Q Consensus 186 ~VD~eaVkavf-PYG~v~tVeVV~GGL 211 (240)
.+..+.|++.| +||+|..|.++.|=-
T Consensus 30 ~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 30 QTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp SCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 38999999999 599998898887653
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=29.67 E-value=56 Score=23.62 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.2
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|++.| +||.+..|.+...
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 42 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKD 42 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 57789999999998 6999988888764
No 29
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=29.56 E-value=40 Score=24.49 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|++.| +||++.+|+++.
T Consensus 14 L~~~~te~~L~~~F~~~G~i~~v~i~~ 40 (110)
T 3s8s_A 14 LNDNVRETFLKDMCRKYGEVEEVEILL 40 (110)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 68899999999998 599998888864
No 30
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.54 E-value=51 Score=21.81 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|+++| +||.+..+.++.
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~ 39 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAIL 39 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 58889999999998 499988888764
No 31
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=29.18 E-value=30 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=15.3
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.+.+|||+ |.-|||+.|+.
T Consensus 15 ~V~~hFG~a~~F~I~d~~~~~ 35 (105)
T 2qtd_A 15 KISNSFEDCKYFLIVRIDDNE 35 (105)
T ss_dssp SBCSCTTTCSEEEEEEEETTE
T ss_pred CcCccCccCCEEEEEEecCCE
Confidence 48899995 88999997653
No 32
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.60 E-value=23 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=23.0
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|++.|- ||.+..+.+..|
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 577899999999985 999988888765
No 33
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.27 E-value=31 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.0
Q ss_pred Ccc-cccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQ-LLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe-~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||+ .++.+.|+++| |||++.+|.++..
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~~v~i~~~ 51 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVISNHLILNK 51 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEEEEEECSS
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 688 99999999987 5999988988753
No 34
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=28.22 E-value=39 Score=23.21 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=21.9
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEE
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVV 207 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV 207 (240)
+|..++.+.|++.| +||.+..+++.
T Consensus 35 lp~~~~~~~l~~~f~~~G~i~~~~~~ 60 (101)
T 2la4_A 35 IPHFATEADLIPLFQNFGFILDFKHY 60 (101)
T ss_dssp CCTTCCHHHHHHHHHTTSCCSEEEEE
T ss_pred CCcccCHHHHHHHHHhCCCEEEEEEe
Confidence 57789999999998 69999888887
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=28.11 E-value=36 Score=27.42 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.9
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||.+..|.++.+
T Consensus 215 l~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 215 LPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 68899999999999 6999988998864
No 36
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=27.88 E-value=31 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.4
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.+.+|||+ |.-|||+.++.
T Consensus 19 ~V~~hFG~a~~F~I~d~~~~~ 39 (120)
T 2wfb_A 19 LVDPRFGRAAGFVVVDAATMA 39 (120)
T ss_dssp BBCSCSTTCSEEEEEETTSCC
T ss_pred cccCccccCCEEEEEEecCCe
Confidence 47899995 89999997654
No 37
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.75 E-value=40 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|++.| +||.+..+.+..
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~ 42 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVY 42 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEE
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 57789999999998 699988888773
No 38
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=27.64 E-value=32 Score=27.05 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=15.5
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.|.+|||. |.-|||+.++.
T Consensus 19 ~V~~HFG~a~~F~Iydv~~~~ 39 (145)
T 1p90_A 19 QLDGHFGSCLRFLVYQVSAKD 39 (145)
T ss_dssp EECCBTTTCSEEEEEEEESSC
T ss_pred EecccCCcCCEEEEEEEeCCE
Confidence 37799995 78999998764
No 39
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.54 E-value=42 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.2
Q ss_pred CcccccHHHHhhhc-CC--CceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PY--GKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PY--G~v~tVeVV~G 209 (240)
||..++.+.|+++| +| |.+..+.+..|
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~~~~~~~g 52 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVERVKKIRD 52 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEeCC
Confidence 58889999999998 58 88877765543
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.46 E-value=56 Score=22.46 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|++.|- ||.+..|.+..-
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 23 LDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 578899999999985 999988888753
No 41
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.25 E-value=42 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||.+..|.+..+
T Consensus 25 lp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 25 LGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 57789999999988 5999988888765
No 42
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.18 E-value=40 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.6
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|++.|- ||++..+.++.-
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 688999999999985 999988988775
No 43
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.87 E-value=57 Score=22.44 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=22.3
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|+++|- ||.+..|.+..
T Consensus 23 lp~~~t~~~l~~~f~~~G~i~~v~i~~ 49 (103)
T 2cq0_A 23 LSEDTRETDLQELFRPFGSISRIYLAK 49 (103)
T ss_dssp CCTTCCHHHHHTTSTTTCCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEee
Confidence 588899999999985 99998888864
No 44
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=26.70 E-value=1.2e+02 Score=28.98 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=54.2
Q ss_pred eEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCCCCCCeEEEEEEeecCCCcccccHHHHhhhc----
Q 026307 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVF---- 196 (240)
Q Consensus 121 KRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~d~~~MkV~VkIGVP~~~Pe~VD~eaVkavf---- 196 (240)
.-++||||=.+|+- +...+.|..++|+...++++.+ .+|+. ..+.| -.| |..+|.+++++.+
T Consensus 3 ~~llv~fg~~i~~~----~~~~v~al~~~L~~~~~~gv~e-~vP~~--~sllV------~yd-p~~~~~~~l~~~l~~~~ 68 (494)
T 3oep_A 3 RGFYLRFGEGVSEE----ANRRALALAEALLRAPPPGLLD-AVPAY--GVLYL------EYD-PRRLSRGRLLRLLKGLP 68 (494)
T ss_dssp EEEEEECCSSSCHH----HHHHHHHHHHHHHHSCCTTEEE-EEEET--TEEEE------EEC-TTTSCHHHHHHHHHHCC
T ss_pred eEEEEEECCcCCHH----HHHHHHHHHHHHhccCCCCcEE-eeccc--cEEEE------Eec-CCCCCHHHHHHHHHHhh
Confidence 45899999888753 4567889999999999999998 77873 33322 335 7788877776543
Q ss_pred ----CCCceeeEEEEcCCcc
Q 026307 197 ----PYGKILDVEVVDGGLI 212 (240)
Q Consensus 197 ----PYG~v~tVeVV~GGL~ 212 (240)
+-++.++|-|.-||-+
T Consensus 69 ~~~~~~~r~v~IPV~Y~g~D 88 (494)
T 3oep_A 69 QERAEEGRVVEIPVRYDGED 88 (494)
T ss_dssp -------CEEEEEEECCCTT
T ss_pred hcccCCCcEEEEEeecChHH
Confidence 2355567888888754
No 45
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=26.46 E-value=33 Score=23.78 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=27.9
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcCCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
||..++.+.|++.|= ||++.++.++.- +.|.+.-++.
T Consensus 19 Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~ 56 (89)
T 3d2w_A 19 CTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFA 56 (89)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEES
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEEC
Confidence 688999999999885 999988888752 4555544443
No 46
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=26.37 E-value=44 Score=25.06 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHhHHhhCCccccccC
Q 026307 133 QHGQDVTAAAMRACRDAISSNSIPAFRRG 161 (240)
Q Consensus 133 lHGQD~TKAA~RAVrDAI~hNSIp~~~~~ 161 (240)
+=..++.++-.+|.++.-..-.|||||.|
T Consensus 18 v~~~~~~~~~~~~~~~~~k~~~ipGFRkG 46 (112)
T 2d3o_1 18 VPAAEVNRAYDQVWAGLARDVRVPGFRPG 46 (112)
T ss_dssp CCGGGTHHHHHHHHHHHHTTSCBTTBCTT
T ss_pred ECHHHHHHHHHHHHHHHHhhCCCCCcCCC
Confidence 44678888999999999999999999964
No 47
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=26.28 E-value=27 Score=27.38 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=19.3
Q ss_pred CcccccHHHHhhhcCCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFPYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfPYG~v~tVeVV~ 208 (240)
||+.||.++++|.+--|- ++|++-+
T Consensus 112 LP~~vd~~~i~A~~~nGv-L~I~lPK 136 (151)
T 1gme_A 112 LLEDAKVEEVKAGLENGV-LTVTVPK 136 (151)
T ss_dssp CSSCCCGGGCEEEEETTE-EEEEEEC
T ss_pred CCCCccccceEEEEECCE-EEEEEEc
Confidence 688899999888887776 5776644
No 48
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=26.21 E-value=47 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=19.0
Q ss_pred CcccccHHHHhhhcCCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFPYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfPYG~v~tVeVV~ 208 (240)
||+.||.++++|.|==|- ++|++=+
T Consensus 125 LP~~vd~~~i~A~~~nGv-L~I~lpK 149 (161)
T 4eld_A 125 LPATVKEENASAKFENGV-LSVILPK 149 (161)
T ss_dssp CSSCBCGGGCEEEEETTE-EEEEEEB
T ss_pred CCCCcccccEEEEEECCE-EEEEEEc
Confidence 688889988888887665 5777654
No 49
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=26.03 E-value=37 Score=25.10 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=15.3
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.|..|||. |.-|||+.|+.
T Consensus 15 ~V~~HFG~a~~F~Iyd~~~~~ 35 (124)
T 1eo1_A 15 EVSRFFGRAPYFMIVEMKKGN 35 (124)
T ss_dssp SSCSCCSSCSCEEEEEESSSS
T ss_pred cCcCccccCCEEEEEEeCCCE
Confidence 47899995 89999997654
No 50
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.86 E-value=56 Score=22.45 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||.+..|.++..
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~ 50 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKILDVEIIFN 50 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEec
Confidence 57889999999998 5999988888743
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=25.67 E-value=54 Score=22.55 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.9
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|+++|- ||.+..|.+...
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQPFGVIDECTVLRG 50 (105)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 588899999999985 999988888754
No 52
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=25.59 E-value=55 Score=26.67 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHHhHHhhCCcccccc--CccCCC--CCCCeEEEEEEeecCCCcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 141 AAMRACRDAISSNSIPAFRR--GSIPGV--SFEQMKLLIKLGVPHSLQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 141 AA~RAVrDAI~hNSIp~~~~--~~IpG~--d~~~MkV~VkIGVP~~~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
-+..++.+++..+.++.... +.-.|+ ....=.+.|-|+ . ||..++.+.|+++|= ||++..|.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ps~vl~l~Vg--N-L~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 11 QAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVE--N-LFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp -----------------------------CCCCCCEEEEEEC--S-CCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred hHHHHHHHHhhcCCccccccccccccCCCCCCCCceEEEEEe--C-cCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 35567778888888877442 111221 112223344443 3 588999999999985 999988888643
No 53
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=25.31 E-value=51 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.547 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEE
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVV 207 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV 207 (240)
+|..++.+.|++.| +||.+..+.+.
T Consensus 39 Lp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 39 FPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp SCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 58889999999998 59999888888
No 54
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=24.98 E-value=54 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=21.7
Q ss_pred Ccc-cccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQ-LLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe-~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||. .++.+.|++.| +||.+..+.+..
T Consensus 18 lp~~~~t~~~l~~~F~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 18 LPLKNVSKEDLFRIFSPYGHIMQINIKN 45 (96)
T ss_dssp STTSCCCHHHHHHHHTTTCCCCEEEEET
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 576 89999999998 599998888753
No 55
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=24.92 E-value=43 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhHHhhCCccccccC
Q 026307 134 HGQDVTAAAMRACRDAISSNSIPAFRRG 161 (240)
Q Consensus 134 HGQD~TKAA~RAVrDAI~hNSIp~~~~~ 161 (240)
=..++.++-.+|.++.-.+-.|||||.|
T Consensus 20 ~~~~~~~~~~~~~~~~~k~~~ipGFRkG 47 (109)
T 2nsc_A 20 GAEEIAQAEDKAVRYLNQRVEIPGFRKG 47 (109)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCTTSCTT
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCcCCC
Confidence 4567888888999999999999999953
No 56
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.74 E-value=58 Score=22.72 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=27.8
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcCCcccccCceeccC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDGGLICSSGVHVAEL 222 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~GGL~v~sGI~ipe~ 222 (240)
||..++.+.|+++|- ||.+..|.+...+- +.|.++-++
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~--~~g~afV~f 68 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIRDIDLKNRRG--GPPFAFVEF 68 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCSSS--SSCCEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEE
Confidence 578899999999984 99998888866553 245544444
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.64 E-value=47 Score=23.44 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=28.1
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC---CcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG---GLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G---GL~v~sGI~ipe~G 223 (240)
||..++.+.|+++|- ||.+..|.++.- |. +.|.+.-++.
T Consensus 35 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~--~~g~afV~f~ 77 (116)
T 1x4b_A 35 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKR--SRGFGFVTFS 77 (116)
T ss_dssp CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS--CCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC--cCceEEEEeC
Confidence 578899999999985 999988888753 32 2355544443
No 58
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=24.54 E-value=37 Score=24.73 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=15.1
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.+..|||. |.-|||+.|+.
T Consensus 16 ~V~~hFG~a~~F~I~d~~~~~ 36 (116)
T 1rdu_A 16 MVSDRFARAEYFIIYDTESGN 36 (116)
T ss_dssp BBCSCGGGCSEEEEEETTTTE
T ss_pred cccCccccCCEEEEEEcCCCe
Confidence 47899995 88999997643
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.26 E-value=62 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=22.6
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|++.|- ||++..|.+..-
T Consensus 13 lp~~~t~~~l~~~f~~~G~v~~v~i~~~ 40 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEPFGKIDNIVLMKD 40 (95)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEeec
Confidence 578899999999985 999988888753
No 60
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=24.25 E-value=44 Score=29.96 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEeeccccCCCCCHHHHHHHHHHhHHhh
Q 026307 123 LFVEMGVGYDQHGQDVTAAAMRACRDAISS 152 (240)
Q Consensus 123 lfIEmGMG~DlHGQD~TKAA~RAVrDAI~h 152 (240)
.++=+|++.| .++|+++|+|+||+.
T Consensus 225 ~~~~~G~~~d-----l~~A~r~A~~~mi~~ 249 (301)
T 2ii1_A 225 HFMTIASAET-----LDAAAVQATKNMATF 249 (301)
T ss_dssp EEEEEEEESS-----HHHHHHHHHHHHHHH
T ss_pred cEEEEEECCC-----HHHHHHHHHHHHHHH
Confidence 3455677655 599999999999975
No 61
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=24.17 E-value=62 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.0
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|++.| +||.+..+.++.
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~ 35 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMW 35 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEE
Confidence 58889999999988 599987888773
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.87 E-value=62 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|++.| +||.+..|.++..
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 52 (100)
T 2do4_A 25 LPFSCTKEELEEICKAHGTVKDLRLVTN 52 (100)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEEC
Confidence 57789999999998 5999888888763
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.86 E-value=52 Score=22.48 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=22.0
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|++.|- ||.+..|.++.
T Consensus 18 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 44 (99)
T 2dgs_A 18 IPHNCGETELREYFKKFGVVTEVVMIY 44 (99)
T ss_dssp CCSSCCHHHHHHHHSSSSCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 578899999999885 99987888764
No 64
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.84 E-value=52 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.2
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|++.| +||.+..+.+..
T Consensus 20 l~~~~t~~~l~~~f~~~G~i~~~~~~~ 46 (85)
T 2ytc_A 20 LGDTITETDLRNHFYQFGEIRTITVVQ 46 (85)
T ss_dssp CTTTSCHHHHHHHHHTTSCEEEEEEEG
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEC
Confidence 57789999999988 599998888875
No 65
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=23.81 E-value=45 Score=29.97 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=19.5
Q ss_pred EEEEeeccccCCCCCHHHHHHHHHHhHHhh
Q 026307 123 LFVEMGVGYDQHGQDVTAAAMRACRDAISS 152 (240)
Q Consensus 123 lfIEmGMG~DlHGQD~TKAA~RAVrDAI~h 152 (240)
.++=+|++.|+ ++|+++|+|+||+.
T Consensus 227 ~~~~~G~~~dl-----~~A~r~A~~~mi~~ 251 (297)
T 2f4l_A 227 AYYIIVSLPDI-----EEALKEVTRETVWF 251 (297)
T ss_dssp EEEEEEEESSH-----HHHHHHHHHHHHHH
T ss_pred cEEEEEECCCH-----HHHHHHHHHHHHHH
Confidence 34556776555 99999999999975
No 66
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=23.61 E-value=1.8e+02 Score=22.41 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=35.5
Q ss_pred EEeecCCCcccccHHHHhh----------hcCCCceeeEEEEcCCcccccCceeccCCCCCCcEEEE
Q 026307 176 KLGVPHSLQQLLDIERVKS----------VFPYGKILDVEVVDGGLICSSGVHVAELGDKNDDCYIV 232 (240)
Q Consensus 176 kIGVP~~~Pe~VD~eaVka----------vfPYG~v~tVeVV~GGL~v~sGI~ipe~GDknD~~vIA 232 (240)
++.|.. -.--+.|+|.+ -+|+| +..+--.+||-.+.+ +.++.| +..|||
T Consensus 32 ~~~v~~--~~~~tfd~LL~~lT~~Ls~~v~lp~G-VR~lyt~~G~~~I~s---l~dL~d--G~~YVc 90 (113)
T 1mg4_A 32 VYAISP--DRFRSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISS---LDQLVE--GESYVC 90 (113)
T ss_dssp EEEECT--TTCSSHHHHHHHHHHHHCCSSSSTTC-CCEEEETTSSCBCCS---GGGCCT--TCEEEE
T ss_pred EEEECc--cccCCHHHHHHHHHHHHhhcCCCCcc-eeEEEcCCCCeEcCC---HHHhhC--CCEEEE
Confidence 455554 23446777765 37999 678999999988877 788874 678888
No 67
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=23.50 E-value=49 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.0
Q ss_pred CcccccHHHHhhhc-CCC--ceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYG--KILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG--~v~tVeVV~ 208 (240)
||..++.+.|++.| +|| ++.++.++.
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~ 37 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFE 37 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEe
Confidence 68899999999998 599 887888765
No 68
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.43 E-value=22 Score=27.17 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.5
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||..++.+.|+++| +||++..|.+..
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 57889999999999 699986776654
No 69
>2kpq_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Agrobacterium tumefaciens str}
Probab=23.32 E-value=36 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHhhC
Q 026307 138 VTAAAMRACRDAISSN 153 (240)
Q Consensus 138 ~TKAA~RAVrDAI~hN 153 (240)
.=.+|.|||+|||.--
T Consensus 50 ~y~~Al~aC~~Al~G~ 65 (100)
T 2kpq_A 50 AHEQALRLCRASLMGD 65 (100)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3578999999999754
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=23.29 E-value=33 Score=24.61 Aligned_cols=39 Identities=10% Similarity=0.374 Sum_probs=26.3
Q ss_pred CcccccHHHHhhhc-CCCc--eeeEEEEc---CCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVF-PYGK--ILDVEVVD---GGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~--v~tVeVV~---GGL~v~sGI~ipe~G 223 (240)
||..++.|.|++.| |||. +.+|.++. .|. +.|.+.=++.
T Consensus 17 L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~--srG~aFV~f~ 61 (95)
T 2lkz_A 17 IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ--NRGFAFVQLS 61 (95)
T ss_dssp CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS--CSSEEEEECS
T ss_pred CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC--CceEeEEEEC
Confidence 68899999999999 6995 44666653 232 3455554544
No 71
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=23.19 E-value=53 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.9
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||.+..+.+..
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVNRVTILC 40 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 578899999999885 99987888764
No 72
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=23.15 E-value=58 Score=22.95 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.8
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||++..|+++.
T Consensus 48 lp~~~t~~~l~~~F~~~G~i~~~~i~~ 74 (118)
T 2khc_A 48 LPQEFTDTDLASTFLPFGNVISAKVFI 74 (118)
T ss_dssp SCTTCCHHHHHHHTTTSCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 577899999999985 99987888763
No 73
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=23.13 E-value=73 Score=21.83 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=28.0
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcCCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
||..++.+.|++.|- ||.+..+.+...---.+.|.+.-++.
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 58 (102)
T 2xs2_A 17 IDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFY 58 (102)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEEC
Confidence 688999999999985 99998888876321112354444443
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.02 E-value=53 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|++.|- ||++..|.++.
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIIS 59 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEe
Confidence 577899999999985 99998888863
No 75
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.00 E-value=53 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~G 209 (240)
||..++.+.|+++|- ||.+..|.++.-
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVLMVQVKKD 50 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEec
Confidence 588899999999985 999888888753
No 76
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=22.91 E-value=46 Score=24.48 Aligned_cols=19 Identities=26% Similarity=0.795 Sum_probs=15.3
Q ss_pred cccccccc--eEEEEEecCCC
Q 026307 6 DIEGHFGQ--YVSIFDVKDDT 24 (240)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~ 24 (240)
.|.+|||. |.-|||+.++.
T Consensus 16 ~V~~hFG~a~~F~I~d~~~~~ 36 (121)
T 2yx6_A 16 NVSKHFGRSRYFVFVDIEGED 36 (121)
T ss_dssp BBCSBTTTCCEEEEEEEETTE
T ss_pred cccccccCCCEEEEEEecCCE
Confidence 47899995 89999997654
No 77
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=22.72 E-value=31 Score=24.60 Aligned_cols=23 Identities=22% Similarity=0.188 Sum_probs=19.4
Q ss_pred CcccccHHHHhhhc-CCCceeeEEE
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEV 206 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeV 206 (240)
||+.||.+.++|.| -=|- ++|++
T Consensus 57 LP~~vd~~~i~A~~~~~Gv-L~I~~ 80 (90)
T 2y1y_A 57 IPADVDPLTITSSMSSDGV-LTVNG 80 (90)
T ss_dssp CCTTBCGGGCEEEECTTSE-EEEEE
T ss_pred CCCCcChhHcEEEECCCCE-EEEEE
Confidence 68999999999999 7887 57765
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=22.65 E-value=55 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||++..|.+..
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~~v~i~~ 50 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLTKVTICK 50 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEE
Confidence 577899999999884 99988888765
No 79
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.35 E-value=69 Score=21.91 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||.+..|.+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~~~~ 49 (99)
T 2cpj_A 23 LPPDITEEEMRKLFEKYGKAGEVFIHK 49 (99)
T ss_dssp CCTTCCHHHHHHHTSTTCCCSEEEEET
T ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEec
Confidence 577899999999986 99998888764
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.34 E-value=70 Score=21.43 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.0
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
+|..++.+.|++.| +||.+..|++..
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~ 50 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMK 50 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 57789999999998 599987888765
No 81
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=22.30 E-value=52 Score=22.57 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.0
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcCCcccccCceeccCC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDGGLICSSGVHVAELG 223 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~GGL~v~sGI~ipe~G 223 (240)
||..++.+.|++.| +||.+..|.+... +.|.+.-++.
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~ 45 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFE 45 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEEC
Confidence 58889999999998 4999988988866 4455544443
No 82
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=22.28 E-value=45 Score=28.51 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=46.8
Q ss_pred eEEEEEeeccccCCCCCHHHHHHHHHHhHHhhCCccccccCccCCCCCCCeEEEEEEeecCCCcccccHHHHhhhc----
Q 026307 121 KLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGVSFEQMKLLIKLGVPHSLQQLLDIERVKSVF---- 196 (240)
Q Consensus 121 KRlfIEmGMG~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~~IpG~d~~~MkV~VkIGVP~~~Pe~VD~eaVkavf---- 196 (240)
+-++||+|=.+|+ -+...+.|..+||+...++++.+ .+|+.. .+.|+- | |..++.+++.+.+
T Consensus 9 ~allve~~~~~~~----~~~~~v~al~~~l~~~~~~gv~e-~vP~~~--sl~V~~------d-p~~~~~~~l~~~l~~~~ 74 (225)
T 2phc_B 9 SAFLISFGDEISE----EINDRVHSLAKAIEKESPEWLVE-LVPAYS--SLLVIY------D-PLKASYEEVESYLKRIS 74 (225)
T ss_dssp TEEEEECCSCCCH----HHHHHHHHHHHHHHHHCCTTEEE-EEEETT--EEEEEE------C-TTTSCHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCH----HHHHHHHHHHHHHhccCCCCeEE-eeccce--EEEEEE------c-CCcCCHHHHHHHHHHHH
Confidence 4589999865443 23455677889999989999988 778843 333322 3 4555443332211
Q ss_pred ------CCCceeeEEEEcCC
Q 026307 197 ------PYGKILDVEVVDGG 210 (240)
Q Consensus 197 ------PYG~v~tVeVV~GG 210 (240)
.-++.++|=|.-||
T Consensus 75 ~~~~~~~~~r~v~IPV~Y~~ 94 (225)
T 2phc_B 75 AREVERIKGKTIEIPVAYGG 94 (225)
T ss_dssp HHHHHHHHTTEEEEEEEEST
T ss_pred hhcccCCCCcEEEEEeEeCC
Confidence 12445588888886
No 83
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.00 E-value=81 Score=22.05 Aligned_cols=27 Identities=15% Similarity=0.578 Sum_probs=22.8
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|+++| +||++..+.++..
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~~~i~~~ 60 (114)
T 1x5o_A 33 LPLSMDEQELENMLKPFGQVISTRILRD 60 (114)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEC
Confidence 57789999999998 5999988888764
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.98 E-value=54 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=22.3
Q ss_pred CcccccHHHHhhhcC--CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP--YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP--YG~v~tVeVV~ 208 (240)
||..++.+.|++.|- ||.+..|.++.
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~~v~i~~ 44 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCRGGKVVL 44 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEE
Confidence 578899999999995 99988888865
No 85
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=21.92 E-value=59 Score=21.39 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=22.0
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||.+..+.++.
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 40 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRISDARVVK 40 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEe
Confidence 577899999999885 99988888864
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=21.87 E-value=56 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+|..++.+.|++.|- ||.+..+++..
T Consensus 16 lp~~~t~~~l~~~f~~~G~v~~~~i~~ 42 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHVLYADIKM 42 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEc
Confidence 688899999999984 99998888775
No 87
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.85 E-value=99 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=25.8
Q ss_pred EEEEEeecCCCcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 173 LLIKLGVPHSLQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 173 V~VkIGVP~~~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
+.|.|+ . ||..++.+.|+++|= ||++..|.+..
T Consensus 26 l~l~V~--N-L~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 26 LLLSIQ--N-PLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEEE--S-CCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEEc--C-cCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 444454 3 578999999999996 99998888865
No 88
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.81 E-value=55 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=22.7
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEcC
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVDG 209 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~G 209 (240)
||..++.+.|++.| +||.+..|.+..-
T Consensus 24 lp~~~t~~~l~~~F~~~G~v~~v~i~~~ 51 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQYGEVVDCVIMKD 51 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 58889999999998 5999988887753
No 89
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.46 E-value=60 Score=22.76 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=10.3
Q ss_pred ccCCCCCHHHHH
Q 026307 131 YDQHGQDVTAAA 142 (240)
Q Consensus 131 ~DlHGQD~TKAA 142 (240)
+||||..+..|-
T Consensus 3 lDLHGl~v~eA~ 14 (82)
T 3fau_A 3 LDLHGLHVDEAL 14 (82)
T ss_dssp EECTTSCHHHHH
T ss_pred EECCCCcHHHHH
Confidence 699999988875
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=21.39 E-value=58 Score=22.85 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=22.2
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|+++|- ||.+..|.++.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRISDARVVK 49 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 578899999999986 99998888874
No 91
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=21.33 E-value=93 Score=22.82 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=28.2
Q ss_pred CeEEEEEEeecCCCcccc-----cHHHHhhhcCCCceeeEEEEcCC
Q 026307 170 QMKLLIKLGVPHSLQQLL-----DIERVKSVFPYGKILDVEVVDGG 210 (240)
Q Consensus 170 ~MkV~VkIGVP~~~Pe~V-----D~eaVkavfPYG~v~tVeVV~GG 210 (240)
.|+++.++=++.+ |++| |.+.+.+.+|--+ .+++..||
T Consensus 2 ~m~i~~~~~i~ap-~e~Vw~~l~D~e~~~~w~p~~~--~~~~~~~~ 44 (162)
T 2pcs_A 2 SLNGNGSIELKGT-VEEVWSKLMDPSILSKCIMGCK--SLELIGED 44 (162)
T ss_dssp -CEEEEEEEEESC-HHHHHHHHTCHHHHHHHSTTEE--EEEEEETT
T ss_pred eEEEeeEEEecCC-HHHHHHHhcCHHHHHhhCCCce--EeEEeCCC
Confidence 3778888778876 7776 9999999999533 67776665
No 92
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=20.89 E-value=26 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.9
Q ss_pred CcccccHHHHhhhc-CCCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVF-PYGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG~v~tVeVV~ 208 (240)
||+.||.+.|+|.| .-|- ++|++=+
T Consensus 63 LP~~vd~~~i~A~~s~~Gv-L~I~~PK 88 (106)
T 3l1e_A 63 LPSNVDQSALSCSLSADGM-LTFSGPK 88 (106)
T ss_dssp CCTTBCTTSCEEEECTTSE-EEEEEEB
T ss_pred CCCCcChhHcEEEECCCCE-EEEEEEc
Confidence 58899999999999 8887 5887654
No 93
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=20.87 E-value=56 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhHHhhCCccccccC
Q 026307 134 HGQDVTAAAMRACRDAISSNSIPAFRRG 161 (240)
Q Consensus 134 HGQD~TKAA~RAVrDAI~hNSIp~~~~~ 161 (240)
=..++.+|-.+|.++.-..-.|||||.|
T Consensus 23 ~~~~~~~~~~~~~~~~~k~v~ipGFRkG 50 (121)
T 1p9y_A 23 AADSIETAVKSELVNVAKKVRIDGLRKG 50 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCTTSCTT
T ss_pred CHHHHHHHHHHHHHHHHhhCccCCcCCC
Confidence 3568888888999999889999999964
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=20.81 E-value=71 Score=23.69 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.2
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|+++|- ||++..|.++.
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~ 80 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVY 80 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 577899999999985 99998888874
No 95
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=20.74 E-value=53 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|+++|- ||.+..|+++.
T Consensus 33 Lp~~~t~~~l~~~F~~~G~i~~v~i~~ 59 (115)
T 2cpz_A 33 LPQEFGDQDLLQMFMPFGNVVSAKVFI 59 (115)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEE
Confidence 578899999999885 99988888874
No 96
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.54 E-value=45 Score=22.95 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=22.4
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEc
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVD 208 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~ 208 (240)
||..++.+.|+++|- ||.+..|.++.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~ 49 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCKSCKMIT 49 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEEC
T ss_pred CCccCCHHHHHHHHHhcCCEeEEEEEe
Confidence 578899999999985 99988888876
No 97
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.35 E-value=49 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=22.7
Q ss_pred ccCCCCCHHHHHHHHHHhHHhhCCccccccC-ccCCCC
Q 026307 131 YDQHGQDVTAAAMRACRDAISSNSIPAFRRG-SIPGVS 167 (240)
Q Consensus 131 ~DlHGQD~TKAA~RAVrDAI~hNSIp~~~~~-~IpG~d 167 (240)
.||||+...+ |.+++.+.|......+++.- +|-|..
T Consensus 7 lDLhG~~~~e-A~~~l~~fl~~a~~~g~~~v~IIHGkG 43 (83)
T 2zqe_A 7 VDLRGLTVAE-ALLEVDQALEEARALGLSTLRLLHGKG 43 (83)
T ss_dssp EECTTCCHHH-HHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred EECCCCCHHH-HHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 7999997554 67778877776544444321 445644
No 98
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.26 E-value=56 Score=21.01 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=28.5
Q ss_pred CcccccHHHHhhhcC-CCceeeEEEEcCCc-ccccCceeccCCC
Q 026307 183 LQQLLDIERVKSVFP-YGKILDVEVVDGGL-ICSSGVHVAELGD 224 (240)
Q Consensus 183 ~Pe~VD~eaVkavfP-YG~v~tVeVV~GGL-~v~sGI~ipe~GD 224 (240)
+|..++.+.|++.|- ||.+..+.+...-- .-+.|.+.-++.+
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 51 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 51 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcC
Confidence 578899999999885 99988888875310 1134555555543
No 99
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=20.22 E-value=12 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=20.8
Q ss_pred CcccccHHHHhhhc-CCC-ceeeEEEE
Q 026307 183 LQQLLDIERVKSVF-PYG-KILDVEVV 207 (240)
Q Consensus 183 ~Pe~VD~eaVkavf-PYG-~v~tVeVV 207 (240)
||..++.+.|++.| +|| ++..|+++
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~ 35 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLM 35 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSS
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEE
Confidence 68899999999998 699 67667765
Done!