BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026308
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HPD|A Chain A, Structure Of Hydroxyethylthiazole Kinase Protein From
Pyrococcus Horikoshii Ot3
Length = 265
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 125/229 (54%), Gaps = 6/229 (2%)
Query: 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLG 60
M+ AN LL+ GASP M H EE+ + A+ +N+GTL + W SM A ++A++LG
Sbjct: 27 MNTTANALLALGASPVMAHAEEELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELG 86
Query: 61 KPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDS-SHESM 119
KP VLDPV AGA+ FR LE++ V++GN EI AL G T+GVDS +
Sbjct: 87 KPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEISALL-GEEGKTRGVDSLEYGEE 145
Query: 120 DAMEAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFV 179
+A + A +DGRR +NG ++ ++T TGC V AL AFV
Sbjct: 146 EAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFV 205
Query: 180 AV-DPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQ 227
AV +PL +AT SAL +GIA E AK P S + + D L+ +++
Sbjct: 206 AVTEPL---KATTSALVTFGIAAEKAYEEAKYPGSFHVKLYDWLYRINE 251
>pdb|1C3Q|A Chain A, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|B Chain B, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|C Chain C, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 284
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 4/224 (1%)
Query: 2 DLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK 61
+ AN LL+ GASP M + EE+ D AL +N+GTLS + +M A + A++ G
Sbjct: 42 NFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGV 101
Query: 62 PWVLDPVAAGASGFRLNACLELV-QLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMD 120
P +LDPV AGA+ FR + +++ +++ IRGNA+EI + KGVD+ D
Sbjct: 102 PVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGD 161
Query: 121 AMEAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180
+ A+ A+ D V HNG ++ K+T GC +T+++ AF A
Sbjct: 162 IIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGCLLTSVVGAFCA 221
Query: 181 VDPLHAFEATASALSVYGIAGEMGMSMA--KGPASLRMHMIDCL 222
V+ F A A A+S YG+A ++ KGP S ++ +++ L
Sbjct: 222 VEENPLFAAIA-AISSYGVAAQLAAQQTADKGPGSFQIELLNKL 264
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
Query: 2 DLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK 61
+ AN LL+ GASP M + EE+ D AL +N+GTLS + +M A + A++ G
Sbjct: 42 NFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGV 101
Query: 62 PWVLDPVAAGASGFRLNACLELV-QLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMD 120
P +LDPV AGA+ FR + +++ +++ IRGNA+EI + KGVD+ D
Sbjct: 102 PVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGD 161
Query: 121 AMEAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180
+ A+ A+ D V HNG ++ K+T G +T+++ AF A
Sbjct: 162 IIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGSLLTSVVGAFCA 221
Query: 181 VDPLHAFEATASALSVYGIAGEMGMSMA--KGPASLRMHMIDCL 222
V+ F A A A+S YG+A ++ KGP S ++ +++ L
Sbjct: 222 VEENPLFAAIA-AISSYGVAAQLAAQQTADKGPGSFQIELLNKL 264
>pdb|1EKK|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKK|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In The R3
Form With Hydroxyethylthiazole
pdb|1EKQ|A Chain A, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
pdb|1EKQ|B Chain B, Crystal Structure Of Hydroxyethylthiazole Kinase In R3
Space Group
Length = 272
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
Query: 2 DLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK 61
+ AN LL+ GASP M + EE+ D AL +N+GTLS + +M A + A++ G
Sbjct: 30 NFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGV 89
Query: 62 PWVLDPVAAGASGFRLNACLELV-QLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMD 120
P +LDPV AGA+ FR + +++ +++ IRGNA+EI + KGVD+ D
Sbjct: 90 PVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGD 149
Query: 121 AMEAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180
+ A+ A+ D V HNG ++ K+T G +T+++ AF A
Sbjct: 150 IIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGXLLTSVVGAFCA 209
Query: 181 VDPLHAFEATASALSVYGIAGEMGMSMA--KGPASLRMHMIDCL 222
V+ F A A A+S YG+A ++ KGP S ++ +++ L
Sbjct: 210 VEENPLFAAIA-AISSYGVAAQLAAQQTADKGPGSFQIELLNKL 252
>pdb|3DZV|A Chain A, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
pdb|3DZV|B Chain B, Crystal Structure Of
4-Methyl-5-(Beta-Hydroxyethyl)thiazole Kinase
(Np_816404.1) From Enterococcus Faecalis V583 At 2.57 A
Resolution
Length = 273
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 9/225 (4%)
Query: 5 ANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV 64
AN LL A P E P AL +N+G LS S+ AA+ A Q+ K V
Sbjct: 33 ANALLYIDAKPIXADDPREFPQXFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTV 92
Query: 65 LDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSS--HESMDAM 122
+D V GAS R +LV +PTV++GN SE + V +GVD S +S +A+
Sbjct: 93 VDLVGYGASDIRNEVGEKLVHNQPTVVKGNLSEXRTFCQL-VSHGRGVDGSPLDQSEEAI 151
Query: 123 EA-ARCLAEXXXXXXXXXXXXXXXTD----GRRVVGAHNGVPMMQKITATGCSVTALIAA 177
E + L + D +V+ NGVP + T TG V AL+AA
Sbjct: 152 EELIQALRQQTQKFPQTVFLATGIQDVLVSQEQVIVLQNGVPELDCFTGTGDLVGALVAA 211
Query: 178 FVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCL 222
+ + A +A+S + + GE + ++G A R + ++ L
Sbjct: 212 LLG-EGNAPXTAAVAAVSYFNLCGEKAKTKSQGLADFRQNTLNQL 255
>pdb|3NL2|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 38/252 (15%)
Query: 5 ANTLLSAGASPAMLHTIEEIPDF--TPHVRALYVNVGTLSANWLPSM-KAAAQLASQLGK 61
AN L+ G+SP M E+ D PH L +N G+++ P M KAA + + + +
Sbjct: 280 ANVTLALGSSPIMSEIQSEVNDLAAIPHA-TLLLNTGSVAP---PEMLKAAIRAYNDVKR 335
Query: 62 PWVLDPVAAGASGFRL---NACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHES 118
P V DPV A+ RL N L Q + I+GN+SEI+ L+ + KGVD+S
Sbjct: 336 PIVFDPVGYSATETRLLLNNKLLTFGQF--SCIKGNSSEILGLAELNKERMKGVDASSGI 393
Query: 119 MDAM--EAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAH------NG------------- 157
+ + +A + +A DG + G + NG
Sbjct: 394 SNELLIQATKIVAFKYKTVAVCTGEFDFIADG-TIEGKYSLSKGTNGTSVEDIPCVAVEA 452
Query: 158 --VPMMQKITATGCSVTALIAAFVAVDPLHA--FEATASALSVYGIAGEMGMSMAKGPAS 213
+ +M ITA+GCS+ + IA + P F A + + +Y AG++ G S
Sbjct: 453 GPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGS 512
Query: 214 LRMHMIDCLHGL 225
++ +ID L+ L
Sbjct: 513 FQVELIDALYRL 524
>pdb|3NM1|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 34/250 (13%)
Query: 5 ANTLLSAGASPAMLHTIEEIPDF--TPHVRALYVNVGTLSANWLPSM-KAAAQLASQLGK 61
AN L+ G+SP M E+ D PH L +N G+++ P M KAA + + + +
Sbjct: 280 ANVTLALGSSPIMSEIQSEVNDLAAIPHA-TLLLNTGSVAP---PEMLKAAIRAYNDVKR 335
Query: 62 PWVLDPVAAGASGFRLNACLELVQL-KPTVIRGNASEIIALSRASVGPTKGVDSSHESMD 120
P V DPV A+ RL L+ + + I+GN+SEI+ L+ + KGVD+S +
Sbjct: 336 PIVFDPVGYSATETRLLLNNLLLTFGQFSCIKGNSSEILGLAELNKERMKGVDASSGISN 395
Query: 121 AM--EAARCLAEXXXXXXXXXXXXXXXTDGRRVVGAH------NG--------------- 157
+ +A + +A DG + G + NG
Sbjct: 396 ELLIQATKIVAFKYKTVAVCTGEFDFIADG-TIEGKYSLSKGTNGTSVEDIPCVAVEAGP 454
Query: 158 VPMMQKITATGCSVTALIAAFVAVDPLHA--FEATASALSVYGIAGEMGMSMAKGPASLR 215
+ +M ITA+GCS+ + IA + P F A + + +Y AG++ G S +
Sbjct: 455 IEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVMLYKAAGKIASEKCNGSGSFQ 514
Query: 216 MHMIDCLHGL 225
+ +ID L+ L
Sbjct: 515 VELIDALYRL 524
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 77 LNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMD 120
L C E +QL+PT I+G + AL A TK +D +++D
Sbjct: 70 LKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKALD 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,546,117
Number of Sequences: 62578
Number of extensions: 174972
Number of successful extensions: 370
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 24
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)