Query 026308
Match_columns 240
No_of_seqs 246 out of 1570
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2145 ThiM Hydroxyethylthiaz 100.0 4.6E-45 9.9E-50 295.5 22.1 237 1-239 26-265 (265)
2 TIGR00694 thiM hydroxyethylthi 100.0 2.1E-43 4.4E-48 294.7 23.1 228 1-230 20-248 (249)
3 PRK09355 hydroxyethylthiazole 100.0 5.8E-43 1.3E-47 294.2 25.1 237 1-239 25-263 (263)
4 PF02110 HK: Hydroxyethylthiaz 100.0 6.5E-43 1.4E-47 286.7 18.8 225 1-227 20-245 (246)
5 cd01170 THZ_kinase 4-methyl-5- 100.0 6.7E-37 1.5E-41 254.3 23.0 221 1-223 20-242 (242)
6 PF01256 Carb_kinase: Carbohyd 100.0 2.5E-28 5.4E-33 202.2 15.3 179 24-224 61-242 (242)
7 PRK10565 putative carbohydrate 100.0 9.2E-27 2E-31 211.6 20.8 199 16-233 304-505 (508)
8 cd01171 YXKO-related B.subtili 99.9 3.9E-26 8.4E-31 191.5 19.5 183 24-222 71-253 (254)
9 TIGR00196 yjeF_cterm yjeF C-te 99.9 4.7E-26 1E-30 192.8 19.3 191 16-226 74-270 (272)
10 COG0063 Predicted sugar kinase 99.9 4.9E-26 1.1E-30 191.3 16.5 181 28-227 99-282 (284)
11 COG0351 ThiD Hydroxymethylpyri 99.9 4.4E-25 9.6E-30 181.8 19.3 166 29-207 69-249 (263)
12 PF08543 Phos_pyr_kin: Phospho 99.9 3.4E-22 7.4E-27 166.8 17.7 168 30-212 60-243 (246)
13 TIGR00097 HMP-P_kinase phospho 99.9 8.3E-22 1.8E-26 165.2 20.0 167 27-206 62-243 (254)
14 KOG3974 Predicted sugar kinase 99.9 5.7E-22 1.2E-26 160.2 16.3 198 20-232 91-299 (306)
15 COG1105 FruK Fructose-1-phosph 99.9 5.9E-21 1.3E-25 161.1 20.7 173 28-224 127-302 (310)
16 PRK12616 pyridoxal kinase; Rev 99.9 1.1E-20 2.3E-25 159.8 20.6 167 29-207 71-253 (270)
17 PRK12412 pyridoxal kinase; Rev 99.9 1.6E-20 3.5E-25 158.7 20.8 169 26-207 66-250 (268)
18 cd01169 HMPP_kinase 4-amino-5- 99.9 1.5E-20 3.2E-25 156.4 19.5 159 32-203 68-241 (242)
19 PRK06427 bifunctional hydroxy- 99.9 1.6E-20 3.4E-25 158.5 19.8 162 31-207 74-252 (266)
20 PTZ00493 phosphomethylpyrimidi 99.9 3.4E-20 7.4E-25 158.6 19.4 170 29-207 70-289 (321)
21 cd01173 pyridoxal_pyridoxamine 99.9 2.4E-20 5.2E-25 156.3 16.4 163 30-204 72-252 (254)
22 PRK07105 pyridoxamine kinase; 99.8 2.4E-19 5.2E-24 152.7 19.0 188 30-227 75-281 (284)
23 PRK08176 pdxK pyridoxal-pyrido 99.8 3.8E-19 8.1E-24 151.2 19.1 164 30-207 88-270 (281)
24 PLN02898 HMP-P kinase/thiamin- 99.8 5.1E-19 1.1E-23 161.7 19.9 168 27-206 73-256 (502)
25 PRK08573 phosphomethylpyrimidi 99.8 7.7E-19 1.7E-23 158.2 20.7 167 27-206 66-247 (448)
26 PRK05756 pyridoxamine kinase; 99.8 1.1E-18 2.4E-23 148.8 19.4 165 30-207 74-259 (286)
27 PTZ00347 phosphomethylpyrimidi 99.8 1.3E-18 2.8E-23 159.1 19.9 165 27-206 294-481 (504)
28 PRK12413 phosphomethylpyrimidi 99.8 3.6E-18 7.7E-23 143.1 20.4 164 30-207 68-246 (253)
29 PRK14713 multifunctional hydro 99.8 5.7E-18 1.2E-22 155.5 19.3 160 33-205 99-274 (530)
30 PRK09517 multifunctional thiam 99.8 1E-17 2.2E-22 159.4 20.5 163 31-205 309-486 (755)
31 KOG2598 Phosphomethylpyrimidin 99.8 4.6E-18 9.9E-23 146.3 15.8 171 30-207 90-287 (523)
32 TIGR00687 pyridox_kin pyridoxa 99.8 2.6E-17 5.5E-22 140.4 19.2 166 29-207 73-260 (286)
33 PRK10294 6-phosphofructokinase 99.8 8.8E-17 1.9E-21 138.4 21.3 172 28-222 128-303 (309)
34 PLN02978 pyridoxal kinase 99.8 5.9E-17 1.3E-21 139.4 18.3 164 31-207 87-271 (308)
35 TIGR03828 pfkB 1-phosphofructo 99.8 1.9E-16 4.1E-21 135.7 21.0 157 27-202 124-283 (304)
36 TIGR03168 1-PFK hexose kinase, 99.8 2.3E-16 5.1E-21 135.3 21.4 158 26-202 123-283 (303)
37 PRK13508 tagatose-6-phosphate 99.8 2.2E-16 4.7E-21 136.0 20.5 174 26-222 122-300 (309)
38 cd01164 FruK_PfkB_like 1-phosp 99.7 2.1E-16 4.5E-21 134.7 19.8 157 27-202 125-284 (289)
39 TIGR01231 lacC tagatose-6-phos 99.7 3.9E-16 8.4E-21 134.4 21.2 175 26-222 122-300 (309)
40 PRK09513 fruK 1-phosphofructok 99.7 7.9E-16 1.7E-20 132.6 21.7 158 26-202 127-287 (312)
41 COG2870 RfaE ADP-heptose synth 99.7 3.3E-17 7.2E-22 140.3 12.5 167 24-221 137-310 (467)
42 cd01174 ribokinase Ribokinase 99.7 2.5E-16 5.3E-21 134.2 17.0 157 25-202 124-282 (292)
43 PTZ00344 pyridoxal kinase; Pro 99.7 6.3E-16 1.4E-20 132.4 18.8 161 34-207 79-262 (296)
44 COG2240 PdxK Pyridoxal/pyridox 99.7 7.2E-16 1.6E-20 128.0 17.8 166 27-207 70-254 (281)
45 TIGR02198 rfaE_dom_I rfaE bifu 99.7 5.7E-16 1.2E-20 133.5 17.5 157 25-202 138-298 (315)
46 cd01166 KdgK 2-keto-3-deoxyglu 99.7 1.2E-15 2.6E-20 130.0 17.9 162 26-202 120-289 (294)
47 PRK11142 ribokinase; Provision 99.7 5.3E-16 1.1E-20 133.1 15.7 157 25-202 127-285 (306)
48 TIGR02152 D_ribokin_bact ribok 99.7 1.3E-15 2.7E-20 130.0 16.6 158 25-202 119-278 (293)
49 cd01172 RfaE_like RfaE encodes 99.7 1.4E-15 3E-20 130.4 16.6 155 26-201 130-289 (304)
50 PTZ00247 adenosine kinase; Pro 99.7 1.4E-15 3E-20 133.0 16.9 164 26-202 155-330 (345)
51 cd01168 adenosine_kinase Adeno 99.7 1.9E-15 4.1E-20 130.2 16.7 162 26-202 141-305 (312)
52 PRK09850 pseudouridine kinase; 99.7 6E-15 1.3E-19 127.3 19.2 174 26-223 130-306 (313)
53 PLN02341 pfkB-type carbohydrat 99.7 5.1E-15 1.1E-19 134.3 18.0 162 24-202 218-389 (470)
54 PTZ00292 ribokinase; Provision 99.7 3.8E-15 8.3E-20 129.1 16.2 160 27-202 143-306 (326)
55 cd00287 ribokinase_pfkB_like r 99.7 6.5E-15 1.4E-19 118.0 16.4 151 4-179 42-195 (196)
56 PRK09954 putative kinase; Prov 99.7 9.2E-15 2E-19 128.6 18.5 154 26-200 183-339 (362)
57 KOG2599 Pyridoxal/pyridoxine/p 99.7 3.9E-15 8.5E-20 121.4 14.2 162 30-203 81-263 (308)
58 PRK11316 bifunctional heptose 99.6 1.5E-14 3.2E-19 131.6 17.9 154 25-201 138-295 (473)
59 cd01167 bac_FRK Fructokinases 99.6 2.1E-14 4.6E-19 122.4 15.9 160 26-201 116-289 (295)
60 PLN02813 pfkB-type carbohydrat 99.6 4.2E-14 9.2E-19 126.7 17.8 163 25-202 219-387 (426)
61 cd01941 YeiC_kinase_like YeiC- 99.6 6.3E-14 1.4E-18 119.1 17.8 159 24-201 122-286 (288)
62 PF00294 PfkB: pfkB family car 99.6 5.5E-14 1.2E-18 120.0 17.0 163 25-202 122-290 (301)
63 PLN02548 adenosine kinase 99.6 8.3E-14 1.8E-18 121.1 17.4 165 26-202 144-319 (332)
64 PLN02379 pfkB-type carbohydrat 99.6 1.1E-13 2.3E-18 122.0 17.9 160 26-202 173-337 (367)
65 cd01946 ribokinase_group_C Rib 99.6 1.9E-13 4.2E-18 115.8 16.6 154 25-200 109-269 (277)
66 cd01945 ribokinase_group_B Rib 99.6 2.3E-13 5E-18 115.5 16.3 149 27-202 123-274 (284)
67 PLN02323 probable fructokinase 99.5 5.6E-13 1.2E-17 115.8 17.9 161 27-202 133-307 (330)
68 cd01944 YegV_kinase_like YegV- 99.5 1.2E-12 2.5E-17 111.6 17.8 158 28-201 123-285 (289)
69 PRK09434 aminoimidazole ribosi 99.5 1.4E-12 3.1E-17 111.8 17.2 158 28-202 117-289 (304)
70 cd01940 Fructoselysine_kinase_ 99.4 6E-12 1.3E-16 105.7 16.7 148 26-201 108-258 (264)
71 cd01943 MAK32 MAK32 kinase. M 99.4 5.8E-12 1.3E-16 109.5 16.4 165 28-202 118-300 (328)
72 cd01942 ribokinase_group_A Rib 99.4 5.1E-12 1.1E-16 106.9 15.5 147 26-202 122-274 (279)
73 PRK15074 inosine/guanosine kin 99.4 1E-11 2.2E-16 111.2 17.6 160 26-202 182-410 (434)
74 COG0524 RbsK Sugar kinases, ri 99.4 1.2E-11 2.5E-16 106.6 16.0 159 26-201 125-288 (311)
75 cd01937 ribokinase_group_D Rib 99.4 1.3E-11 2.9E-16 103.1 14.3 147 27-201 104-253 (254)
76 PLN02967 kinase 99.3 4.7E-11 1E-15 109.7 16.8 174 26-202 331-527 (581)
77 cd01947 Guanosine_kinase_like 99.3 7.1E-11 1.5E-15 99.3 16.0 141 27-202 118-260 (265)
78 PLN02630 pfkB-type carbohydrat 99.3 3.9E-10 8.4E-15 98.2 17.1 145 28-202 120-273 (335)
79 PLN02543 pfkB-type carbohydrat 99.2 4.1E-10 8.9E-15 102.3 16.6 175 26-202 262-469 (496)
80 PRK09813 fructoselysine 6-kina 99.2 6.9E-10 1.5E-14 93.2 16.8 145 26-202 109-255 (260)
81 cd01939 Ketohexokinase Ketohex 99.2 5.9E-10 1.3E-14 95.0 15.2 149 28-202 125-285 (290)
82 KOG2854 Possible pfkB family c 99.0 3.1E-09 6.8E-14 89.7 11.4 168 26-202 155-330 (343)
83 KOG2855 Ribokinase [Carbohydra 99.0 4.9E-09 1.1E-13 89.3 10.2 170 11-200 119-304 (330)
84 KOG3009 Predicted carbohydrate 95.5 0.14 3E-06 46.0 9.6 151 30-193 425-590 (614)
85 KOG2947 Carbohydrate kinase [C 95.1 0.07 1.5E-06 44.0 6.2 49 149-198 240-290 (308)
86 PRK03979 ADP-specific phosphof 89.2 10 0.00022 34.7 12.3 102 30-133 222-338 (463)
87 PF10087 DUF2325: Uncharacteri 79.8 4.9 0.00011 28.2 4.8 41 24-67 42-82 (97)
88 TIGR03531 selenium_SpcS O-phos 76.4 3.8 8.3E-05 37.3 4.3 66 4-69 164-244 (444)
89 COG1646 Predicted phosphate-bi 71.2 4.4 9.5E-05 33.4 3.0 73 30-104 41-117 (240)
90 COG1099 Predicted metal-depend 68.9 2.6 5.5E-05 34.6 1.2 52 16-67 80-134 (254)
91 PRK10076 pyruvate formate lyas 64.1 77 0.0017 25.7 9.4 84 32-132 40-127 (213)
92 COG0399 WecE Predicted pyridox 62.3 8.2 0.00018 34.3 3.2 61 4-69 87-158 (374)
93 cd01948 EAL EAL domain. This d 62.0 80 0.0017 25.2 9.2 79 48-142 133-211 (240)
94 PF01113 DapB_N: Dihydrodipico 61.1 22 0.00048 26.0 4.9 62 22-94 59-123 (124)
95 COG1058 CinA Predicted nucleot 61.0 10 0.00022 31.8 3.4 63 3-69 25-96 (255)
96 TIGR02045 P_fruct_ADP ADP-spec 60.8 94 0.002 28.4 9.6 105 29-135 208-326 (446)
97 TIGR01768 GGGP-family geranylg 58.3 9.8 0.00021 31.3 2.8 38 31-70 28-65 (223)
98 smart00052 EAL Putative diguan 58.2 94 0.002 24.8 9.0 79 48-142 134-212 (241)
99 PRK05968 hypothetical protein; 57.8 26 0.00057 31.1 5.7 62 7-68 122-185 (389)
100 PRK04169 geranylgeranylglycery 52.1 15 0.00032 30.4 2.9 40 30-71 32-71 (232)
101 COG2200 Rtn c-di-GMP phosphodi 51.2 94 0.002 25.9 7.7 80 47-142 136-215 (256)
102 KOG1401 Acetylornithine aminot 51.1 47 0.001 29.8 5.9 73 20-93 192-273 (433)
103 TIGR01769 GGGP geranylgeranylg 48.6 14 0.0003 29.9 2.2 38 31-70 25-63 (205)
104 PRK06739 pyruvate kinase; Vali 47.3 22 0.00048 31.4 3.4 48 22-69 221-273 (352)
105 COG0269 SgbH 3-hexulose-6-phos 46.5 1.2E+02 0.0026 24.8 7.2 93 30-142 80-173 (217)
106 PF02593 dTMP_synthase: Thymid 45.3 79 0.0017 25.9 6.1 75 20-102 41-116 (217)
107 cd00615 Orn_deC_like Ornithine 45.2 32 0.0007 29.1 4.1 63 5-68 113-191 (294)
108 cd01744 GATase1_CPSase Small c 44.1 72 0.0016 24.8 5.6 61 4-64 12-73 (178)
109 PRK00125 pyrF orotidine 5'-pho 43.5 40 0.00086 28.7 4.3 62 33-94 54-122 (278)
110 cd00288 Pyruvate_Kinase Pyruva 42.9 30 0.00066 31.9 3.7 43 23-65 230-277 (480)
111 PRK03673 hypothetical protein; 42.5 51 0.0011 29.6 5.0 64 3-70 25-97 (396)
112 cd07186 CofD_like LPPG:FO 2-ph 42.3 23 0.00051 30.5 2.7 42 23-64 176-219 (303)
113 PTZ00300 pyruvate kinase; Prov 41.6 32 0.0007 31.5 3.6 46 22-67 202-252 (454)
114 PRK14039 ADP-dependent glucoki 41.6 1.5E+02 0.0033 27.1 7.9 103 30-135 210-325 (453)
115 TIGR02130 dapB_plant dihydrodi 41.6 1.9E+02 0.0042 24.6 8.0 64 23-96 60-126 (275)
116 PRK05826 pyruvate kinase; Prov 41.3 34 0.00074 31.4 3.8 47 23-69 230-281 (465)
117 PF01041 DegT_DnrJ_EryC1: DegT 40.5 25 0.00054 30.8 2.7 63 3-70 77-150 (363)
118 PF05368 NmrA: NmrA-like famil 40.4 53 0.0012 26.4 4.5 50 19-69 53-102 (233)
119 TIGR00284 dihydropteroate synt 40.2 89 0.0019 29.0 6.3 66 4-69 220-289 (499)
120 PRK14038 ADP-dependent glucoki 39.9 2.8E+02 0.006 25.5 9.2 107 26-135 220-336 (453)
121 COG0391 Uncharacterized conser 39.5 44 0.00096 29.1 4.0 42 23-64 182-225 (323)
122 PRK06354 pyruvate kinase; Prov 39.4 38 0.00082 32.2 3.8 43 23-65 235-282 (590)
123 COG0075 Serine-pyruvate aminot 38.0 30 0.00066 30.9 2.8 46 20-70 118-171 (383)
124 PLN02762 pyruvate kinase compl 37.9 37 0.0008 31.6 3.4 44 22-65 260-308 (509)
125 PRK09206 pyruvate kinase; Prov 37.8 37 0.0008 31.3 3.4 45 23-67 229-278 (470)
126 TIGR00789 flhB_rel flhB C-term 37.5 65 0.0014 22.0 3.8 23 47-69 27-49 (82)
127 PTZ00066 pyruvate kinase; Prov 37.0 38 0.00082 31.5 3.3 44 22-65 265-313 (513)
128 COG1504 Uncharacterized conser 36.1 20 0.00044 25.9 1.2 46 22-69 52-98 (121)
129 COG2257 Uncharacterized homolo 36.1 47 0.001 23.1 2.9 23 47-69 32-54 (92)
130 PF04016 DUF364: Domain of unk 35.8 47 0.001 25.2 3.3 43 23-69 55-98 (147)
131 PLN02461 Probable pyruvate kin 35.7 43 0.00093 31.2 3.5 44 22-65 249-297 (511)
132 PRK08247 cystathionine gamma-s 35.4 83 0.0018 27.6 5.2 59 10-69 113-175 (366)
133 TIGR01826 CofD_related conserv 35.1 34 0.00075 29.6 2.6 20 22-41 164-183 (310)
134 TIGR03576 pyridox_MJ0158 pyrid 35.1 65 0.0014 28.1 4.5 61 6-68 113-176 (346)
135 PF00117 GATase: Glutamine ami 34.8 63 0.0014 25.2 4.0 37 28-64 40-76 (192)
136 smart00642 Aamy Alpha-amylase 34.7 43 0.00094 26.0 3.0 28 46-73 69-96 (166)
137 PRK07269 cystathionine gamma-s 33.9 41 0.0009 29.6 3.1 47 21-68 126-174 (364)
138 cd06452 SepCysS Sep-tRNA:Cys-t 33.9 41 0.00088 29.3 3.0 39 30-69 139-178 (361)
139 PF01933 UPF0052: Uncharacteri 33.7 40 0.00087 29.0 2.8 47 23-69 176-225 (300)
140 PRK09331 Sep-tRNA:Cys-tRNA syn 33.6 46 0.001 29.4 3.3 40 30-69 158-197 (387)
141 PRK12381 bifunctional succinyl 33.3 65 0.0014 28.7 4.3 49 21-69 173-226 (406)
142 COG0541 Ffh Signal recognition 33.1 1.1E+02 0.0023 28.0 5.4 99 24-139 147-247 (451)
143 cd00617 Tnase_like Tryptophana 33.1 1E+02 0.0022 28.0 5.5 24 46-69 172-195 (431)
144 COG1921 SelA Selenocysteine sy 33.1 61 0.0013 29.0 3.9 21 50-70 177-197 (395)
145 COG0001 HemL Glutamate-1-semia 32.8 50 0.0011 30.0 3.3 51 19-70 185-244 (432)
146 COG2099 CobK Precorrin-6x redu 32.5 52 0.0011 27.6 3.2 77 50-143 56-139 (257)
147 cd00613 GDC-P Glycine cleavage 32.4 46 0.00099 29.2 3.1 47 22-68 150-197 (398)
148 cd07044 CofD_YvcK Family of Co 32.1 39 0.00084 29.3 2.5 19 23-41 167-185 (309)
149 TIGR01437 selA_rel uncharacter 31.9 59 0.0013 28.5 3.7 63 6-69 118-188 (363)
150 PRK05093 argD bifunctional N-s 31.9 68 0.0015 28.5 4.1 50 20-69 173-227 (403)
151 cd07187 YvcK_like family of mo 31.8 40 0.00087 29.2 2.5 19 23-41 168-186 (308)
152 PF00224 PK: Pyruvate kinase, 31.8 31 0.00068 30.3 1.9 48 23-70 232-284 (348)
153 PLN02775 Probable dihydrodipic 31.7 2.6E+02 0.0057 24.0 7.4 57 30-96 79-137 (286)
154 cd02812 PcrB_like PcrB_like pr 31.6 34 0.00074 28.0 2.0 72 30-103 25-100 (219)
155 PF00128 Alpha-amylase: Alpha 31.5 46 0.001 27.7 2.9 29 46-74 51-79 (316)
156 PRK08354 putative aminotransfe 31.4 1.1E+02 0.0024 26.0 5.2 22 47-68 137-158 (311)
157 PF15608 PELOTA_1: PELOTA RNA 31.4 44 0.00096 23.8 2.2 21 49-69 69-89 (100)
158 TIGR02127 pyrF_sub2 orotidine 31.4 80 0.0017 26.6 4.2 63 33-95 54-122 (261)
159 COG1440 CelA Phosphotransferas 31.2 52 0.0011 23.5 2.5 44 21-69 39-83 (102)
160 PF04309 G3P_antiterm: Glycero 30.8 79 0.0017 25.0 3.8 62 30-97 19-83 (175)
161 PRK13397 3-deoxy-7-phosphohept 30.7 3.2E+02 0.007 22.9 7.6 84 46-139 65-156 (250)
162 PRK00048 dihydrodipicolinate r 30.7 2.5E+02 0.0053 23.4 7.1 63 22-95 52-117 (257)
163 TIGR00045 glycerate kinase. Th 30.5 74 0.0016 28.4 4.0 44 23-66 276-321 (375)
164 PLN02721 threonine aldolase 30.4 63 0.0014 27.7 3.6 22 47-68 158-179 (353)
165 PLN02623 pyruvate kinase 30.0 67 0.0015 30.4 3.8 44 22-65 333-381 (581)
166 COG0076 GadB Glutamate decarbo 29.9 52 0.0011 30.2 3.1 52 20-71 194-248 (460)
167 PF03129 HGTP_anticodon: Antic 29.9 1.4E+02 0.003 20.1 4.7 64 33-100 2-66 (94)
168 PRK06186 hypothetical protein; 29.7 1E+02 0.0022 25.5 4.4 37 27-64 50-86 (229)
169 PF02571 CbiJ: Precorrin-6x re 29.6 41 0.00089 28.1 2.2 78 50-143 56-141 (249)
170 TIGR00315 cdhB CO dehydrogenas 29.5 87 0.0019 24.4 3.8 50 17-69 13-64 (162)
171 PRK05939 hypothetical protein; 29.4 1.3E+02 0.0028 26.9 5.5 62 7-69 105-170 (397)
172 PLN02765 pyruvate kinase 29.3 61 0.0013 30.3 3.4 50 21-71 262-316 (526)
173 PRK15407 lipopolysaccharide bi 28.9 80 0.0017 28.7 4.1 60 4-68 124-194 (438)
174 PRK09932 glycerate kinase II; 28.6 79 0.0017 28.3 3.9 45 23-67 277-323 (381)
175 cd06454 KBL_like KBL_like; thi 28.6 49 0.0011 28.3 2.6 21 49-69 151-171 (349)
176 PRK09776 putative diguanylate 28.1 3.4E+02 0.0073 27.4 8.8 80 47-142 974-1053(1092)
177 PRK10342 glycerate kinase I; P 28.1 81 0.0018 28.2 3.8 45 23-67 277-323 (381)
178 TIGR01822 2am3keto_CoA 2-amino 28.1 96 0.0021 27.1 4.4 21 49-69 189-209 (393)
179 PF00563 EAL: EAL domain; Int 27.9 96 0.0021 24.6 4.1 75 51-142 138-212 (236)
180 PRK06702 O-acetylhomoserine am 27.6 96 0.0021 28.2 4.3 64 5-69 118-186 (432)
181 PF14359 DUF4406: Domain of un 27.6 1.1E+02 0.0023 21.3 3.7 36 26-64 55-90 (92)
182 PRK07810 O-succinylhomoserine 27.6 92 0.002 27.9 4.2 59 10-69 132-194 (403)
183 COG0469 PykF Pyruvate kinase [ 27.2 74 0.0016 29.3 3.5 50 21-70 230-284 (477)
184 PRK07865 N-succinyldiaminopime 27.2 1.3E+02 0.0027 26.2 5.0 40 30-69 148-190 (364)
185 TIGR01819 F420_cofD LPPG:FO 2- 27.1 57 0.0012 28.1 2.6 46 23-69 175-222 (297)
186 PRK07671 cystathionine beta-ly 26.9 85 0.0019 27.8 3.9 59 10-69 111-173 (377)
187 PLN02509 cystathionine beta-ly 26.8 1.4E+02 0.0031 27.4 5.3 60 9-69 193-256 (464)
188 TIGR01328 met_gam_lyase methio 26.7 90 0.002 27.8 4.0 49 20-69 133-183 (391)
189 TIGR03246 arg_catab_astC succi 26.6 94 0.002 27.6 4.1 50 20-69 168-222 (397)
190 PRK13520 L-tyrosine decarboxyl 26.5 68 0.0015 27.7 3.1 20 49-68 170-189 (371)
191 cd06450 DOPA_deC_like DOPA dec 26.5 54 0.0012 28.0 2.5 23 47-69 165-187 (345)
192 PF07611 DUF1574: Protein of u 26.3 56 0.0012 28.8 2.5 30 36-65 241-270 (345)
193 PRK07681 aspartate aminotransf 26.3 91 0.002 27.6 4.0 40 30-69 166-208 (399)
194 COG4992 ArgD Ornithine/acetylo 26.2 2.3E+02 0.0051 25.5 6.3 74 19-93 172-251 (404)
195 cd05565 PTS_IIB_lactose PTS_II 26.0 91 0.002 22.1 3.1 42 23-69 40-82 (99)
196 PRK11366 puuD gamma-glutamyl-g 26.0 1.8E+02 0.0039 24.2 5.4 59 6-64 33-111 (254)
197 TIGR01140 L_thr_O3P_dcar L-thr 26.0 1.5E+02 0.0033 25.4 5.2 50 20-69 115-167 (330)
198 PRK08134 O-acetylhomoserine am 26.0 92 0.002 28.3 3.9 58 11-69 127-188 (433)
199 PRK08064 cystathionine beta-ly 25.8 1.2E+02 0.0026 27.0 4.6 58 10-68 115-176 (390)
200 TIGR00853 pts-lac PTS system, 25.8 91 0.002 21.7 3.1 41 24-69 44-85 (95)
201 cd06502 TA_like Low-specificit 25.7 90 0.0019 26.5 3.7 21 47-67 146-166 (338)
202 COG2873 MET17 O-acetylhomoseri 25.6 88 0.0019 28.0 3.5 50 19-69 135-186 (426)
203 PLN02231 alanine transaminase 25.6 82 0.0018 29.5 3.6 35 34-68 276-312 (534)
204 TIGR00334 5S_RNA_mat_M5 ribonu 25.6 43 0.00094 26.4 1.5 44 22-70 15-59 (174)
205 PRK08068 transaminase; Reviewe 25.6 97 0.0021 27.2 4.0 39 30-68 167-208 (389)
206 cd00614 CGS_like CGS_like: Cys 25.2 74 0.0016 27.9 3.1 49 20-69 114-164 (369)
207 PRK11359 cyclic-di-GMP phospho 25.1 4.6E+02 0.0099 25.3 8.8 80 47-142 678-757 (799)
208 PRK06943 adenosylmethionine--8 25.1 1.2E+02 0.0027 27.6 4.6 26 46-71 242-267 (453)
209 PRK11613 folP dihydropteroate 25.1 2.4E+02 0.0052 24.1 6.0 17 51-67 167-186 (282)
210 PRK07503 methionine gamma-lyas 25.0 95 0.0021 27.7 3.8 60 9-69 126-189 (403)
211 TIGR03235 DNA_S_dndA cysteine 24.9 69 0.0015 27.7 2.9 20 49-68 157-176 (353)
212 cd01832 SGNH_hydrolase_like_1 24.8 1.4E+02 0.003 22.8 4.4 18 120-137 132-149 (185)
213 PRK11059 regulatory protein Cs 24.7 4.6E+02 0.0099 25.0 8.6 80 46-142 532-612 (640)
214 PRK06247 pyruvate kinase; Prov 24.5 73 0.0016 29.4 3.0 45 23-67 226-275 (476)
215 TIGR03812 tyr_de_CO2_Arch tyro 24.5 78 0.0017 27.4 3.1 21 49-69 172-192 (373)
216 PF03447 NAD_binding_3: Homose 24.1 1.2E+02 0.0026 21.6 3.6 38 59-99 58-95 (117)
217 TIGR01325 O_suc_HS_sulf O-succ 24.0 1.1E+02 0.0025 26.9 4.1 49 20-69 128-178 (380)
218 cd00739 DHPS DHPS subgroup of 23.9 1.8E+02 0.0039 24.4 5.0 18 50-67 153-173 (257)
219 PF01053 Cys_Met_Meta_PP: Cys/ 23.9 90 0.0019 27.9 3.4 50 19-69 128-180 (386)
220 COG1806 Uncharacterized protei 23.7 3.3E+02 0.0072 23.1 6.4 40 27-67 141-180 (273)
221 PF00202 Aminotran_3: Aminotra 23.6 77 0.0017 27.6 2.9 46 47-92 198-243 (339)
222 TIGR01361 DAHP_synth_Bsub phos 23.4 1.6E+02 0.0035 24.7 4.7 88 46-139 75-166 (260)
223 COG1180 PflA Pyruvate-formate 23.4 4.4E+02 0.0096 22.0 8.9 86 30-132 83-172 (260)
224 PRK08248 O-acetylhomoserine am 23.0 1.1E+02 0.0025 27.6 4.0 59 10-69 126-188 (431)
225 PF02595 Gly_kinase: Glycerate 23.0 46 0.001 29.7 1.4 45 23-67 277-323 (377)
226 PRK13608 diacylglycerol glucos 22.9 4.7E+02 0.01 23.0 7.8 39 21-69 264-303 (391)
227 PRK12564 carbamoyl phosphate s 22.9 2E+02 0.0044 25.4 5.4 59 5-63 192-251 (360)
228 PF04587 ADP_PFK_GK: ADP-speci 22.9 2E+02 0.0043 26.3 5.5 74 27-103 206-292 (444)
229 PLN02651 cysteine desulfurase 22.8 86 0.0019 27.3 3.1 21 49-69 157-177 (364)
230 PLN02242 methionine gamma-lyas 22.8 91 0.002 28.1 3.3 58 11-69 140-202 (418)
231 PRK07811 cystathionine gamma-s 22.8 83 0.0018 27.9 3.0 49 20-69 135-185 (388)
232 PRK08133 O-succinylhomoserine 22.7 1.2E+02 0.0026 26.9 4.0 59 9-68 122-184 (390)
233 PRK07309 aromatic amino acid a 22.6 1.2E+02 0.0027 26.7 4.0 39 31-69 167-208 (391)
234 COG0084 TatD Mg-dependent DNas 22.4 1.2E+02 0.0026 25.5 3.7 76 23-104 78-170 (256)
235 cd06451 AGAT_like Alanine-glyo 22.4 90 0.0019 26.9 3.1 47 21-68 113-162 (356)
236 PF04430 DUF498: Protein of un 22.0 54 0.0012 23.5 1.4 44 23-69 46-89 (110)
237 cd06453 SufS_like Cysteine des 21.9 79 0.0017 27.4 2.7 21 49-69 158-178 (373)
238 PLN02974 adenosylmethionine-8- 21.9 1.7E+02 0.0037 29.0 5.1 26 47-72 606-631 (817)
239 TIGR02326 transamin_PhnW 2-ami 21.8 93 0.002 27.0 3.1 20 49-68 148-167 (363)
240 PRK06290 aspartate aminotransf 21.8 1.3E+02 0.0028 26.9 4.0 39 30-68 179-220 (410)
241 KOG1615 Phosphoserine phosphat 21.8 1.1E+02 0.0024 24.8 3.1 103 22-141 7-113 (227)
242 COG0161 BioA Adenosylmethionin 21.7 1.7E+02 0.0037 26.8 4.7 55 38-93 228-282 (449)
243 PRK15447 putative protease; Pr 21.4 5.1E+02 0.011 22.1 7.5 72 30-102 28-104 (301)
244 TIGR02045 P_fruct_ADP ADP-spec 20.9 81 0.0018 28.8 2.5 21 161-181 421-442 (446)
245 PRK06176 cystathionine gamma-s 20.9 1.5E+02 0.0032 26.3 4.2 49 20-69 123-173 (380)
246 PLN02368 alanine transaminase 20.8 1.3E+02 0.0028 27.0 3.8 7 47-53 195-201 (407)
247 PRK07179 hypothetical protein; 20.8 1.3E+02 0.0027 26.7 3.8 50 19-69 168-220 (407)
248 KOG0053 Cystathionine beta-lya 20.7 91 0.002 28.1 2.7 49 19-69 150-201 (409)
249 PRK10534 L-threonine aldolase; 20.5 1.3E+02 0.0029 25.6 3.7 21 47-67 147-167 (333)
250 COG2248 Predicted hydrolase (m 20.5 1.9E+02 0.0042 24.5 4.4 39 52-103 16-54 (304)
251 PRK06939 2-amino-3-ketobutyrat 20.4 1.5E+02 0.0033 25.8 4.2 21 49-69 193-213 (397)
252 PRK09276 LL-diaminopimelate am 20.4 1.5E+02 0.0033 25.9 4.2 40 30-69 166-208 (385)
253 PRK00945 acetyl-CoA decarbonyl 20.4 1.6E+02 0.0034 23.2 3.7 51 17-69 20-72 (171)
254 PRK05579 bifunctional phosphop 20.3 6.4E+02 0.014 22.7 9.3 78 57-141 113-196 (399)
255 COG0118 HisH Glutamine amidotr 20.2 1.5E+02 0.0033 24.0 3.6 32 4-40 17-48 (204)
256 TIGR03539 DapC_actino succinyl 20.0 2.1E+02 0.0046 24.8 4.9 40 30-69 142-184 (357)
No 1
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-45 Score=295.48 Aligned_cols=237 Identities=46% Similarity=0.699 Sum_probs=222.9
Q ss_pred CchhhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH
Q 026308 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC 80 (240)
Q Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~ 80 (240)
+||+||++|++|+||+|++.++|++++.+.+|+++|+.|.++++.++.+..+++.+++.++|+||||++.+.+.+|.+..
T Consensus 26 ~nftAN~lLAlGaSP~Ma~~~eE~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~ 105 (265)
T COG2145 26 QNFTANGLLALGASPVMADAPEEVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFA 105 (265)
T ss_pred hhcchHHHHHcCCCchhccCHHHHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHH
Confidence 58999999999999999999999999999999999999999999899999999999999999999999999999999888
Q ss_pred HHHhcc-CCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCCc
Q 026308 81 LELVQL-KPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGVP 159 (240)
Q Consensus 81 ~~~~~~-~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~~ 159 (240)
+++++. ++++|+.|.+|...|.|... ..+|+|+.....+..+.++.++++++++|++||..|++.|+++++.+.++.+
T Consensus 106 ~~LL~~~~~~~IrGN~sEI~~Lag~~~-~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~vD~Isdg~~~~~i~nG~p 184 (265)
T COG2145 106 LELLAEVKPAAIRGNASEIAALAGEAG-GGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGEVDYISDGTRVVVIHNGSP 184 (265)
T ss_pred HHHHHhcCCcEEeccHHHHHHHhcccc-cccccccccchhhHHHHHHHHHHHhCcEEEEECCeeEEEcCCeEEEEECCCc
Confidence 999984 59999999999999999876 7789997566778999999999999999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhhhhhC-CCccccHHHHHHHHhcCCHHHHhcccccc
Q 026308 160 MMQKITATGCSVTALIAAFVAVDPLH-AFEATASALSVYGIAGEMGMSMA-KGPASLRMHMIDCLHGLDQAALLSRTNIT 237 (240)
Q Consensus 160 ~~~~~~GaGD~lag~iaa~la~~~~~-~~~A~~~A~~~~~~a~~~a~~~~-~~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (240)
.+.+++|+||.+++++|+|++.. .+ +++|+..|+.+.+.|++.++++. .+||+|...++|.|+++..+++..++++|
T Consensus 185 ll~~ItGtGCllgav~aaF~av~-~d~~~~A~~~A~~~~~iAge~A~~~~~~gpGsF~~~flD~L~~l~~E~i~~~~~~e 263 (265)
T COG2145 185 LLGKITGTGCLLGAVVAAFLAVE-KDPLLDAAAEACAVYGIAGELAAERANKGPGSFRPAFLDALYQLTQEVIKERARIE 263 (265)
T ss_pred HHhhhhccccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHhcCHHHHHHhhhhc
Confidence 99999999999999999999985 67 68999999999999999999986 69999999999999999999999999998
Q ss_pred cc
Q 026308 238 AL 239 (240)
Q Consensus 238 ~~ 239 (240)
++
T Consensus 264 ~~ 265 (265)
T COG2145 264 EV 265 (265)
T ss_pred cC
Confidence 74
No 2
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=100.00 E-value=2.1e-43 Score=294.67 Aligned_cols=228 Identities=40% Similarity=0.625 Sum_probs=197.2
Q ss_pred CchhhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH
Q 026308 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC 80 (240)
Q Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~ 80 (240)
++++||++|++|++|+|+++++|+.++++.+|++++++|+++++..+.+..+++.++++++|+|+||++.+.++++....
T Consensus 20 ~~~~An~~la~g~sp~m~~~~~e~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~ 99 (249)
T TIGR00694 20 QNFTANGLLALGASPVMSEAEEEVAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETA 99 (249)
T ss_pred hhhhHHHHHHcCCChhhcCCHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHH
Confidence 58999999999999999999999999999999999999998777777888888888888999999999998888776555
Q ss_pred HHHhc-cCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCCc
Q 026308 81 LELVQ-LKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGVP 159 (240)
Q Consensus 81 ~~~~~-~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~~ 159 (240)
+++++ .++++||||..|+++|+|... ..+|+|.....++..+.+++|++++++.|++||..|+++++++.+.+..+.+
T Consensus 100 ~~Ll~~~~~~vITpN~~E~~~L~g~~~-~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~~D~i~~~~~~~~~~~g~~ 178 (249)
T TIGR00694 100 LELLSEGRFAAIRGNAGEIASLAGETG-LMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGEVDYVSDGTSVYTIHNGTE 178 (249)
T ss_pred HHHHhhcCCceeCCCHHHHHHHhCCCC-CCCCcCCccchHHHHHHHHHHHHHhCCEEEEECCCcEEEeCCEEEEECCCCh
Confidence 55664 357999999999999999652 2244453334567888999999999889999999999998888777766677
Q ss_pred cCCCccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhcCCHHHH
Q 026308 160 MMQKITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQAAL 230 (240)
Q Consensus 160 ~~~~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~~~~~~~ 230 (240)
.+.+++|+||+|+|+||++++++ .++.+|+..|..+++.|++.+.++..++|++..+++|.|+.+..+++
T Consensus 179 ~~~~~~GtGc~LssaIaa~LA~g-~~~~~A~~~A~~~~~~a~~~a~~~~~g~g~~~~~l~d~l~~~~~~~~ 248 (249)
T TIGR00694 179 LLGKITGSGCLLGSVVAAFCAVE-EDPLDAAISACLLYKIAGELAAERSKGPGSFQIELLDALSQLTEEVI 248 (249)
T ss_pred HHhCCccchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHccCHHhc
Confidence 77777999999999999999996 79999999999999999999887656899999999999999988765
No 3
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=100.00 E-value=5.8e-43 Score=294.16 Aligned_cols=237 Identities=46% Similarity=0.725 Sum_probs=205.8
Q ss_pred CchhhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH
Q 026308 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC 80 (240)
Q Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~ 80 (240)
++++||++|++|++|+|+++++|+.++++.+|++++++|++++...+.+..+++.++++++|+||||++.+.+.++.+..
T Consensus 25 ~~~~An~~la~g~sp~m~~~~~e~~~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~ 104 (263)
T PRK09355 25 MNFTANGLLALGASPAMAHAPEEAEEMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFA 104 (263)
T ss_pred hhhHHHHHHHhCCCcccCCCHHHHHHHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHH
Confidence 58999999999999999999999999999999999999999777677777777778899999999999988777765555
Q ss_pred HHHhc-cCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCCc
Q 026308 81 LELVQ-LKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGVP 159 (240)
Q Consensus 81 ~~~~~-~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~~ 159 (240)
+++++ .++++||||..|+++|+|.+. ..+++|...+.+++.+.+++|++++++.|++||..++++++++.+.+..+.+
T Consensus 105 ~~ll~~~~~~vItPN~~E~~~L~g~~~-~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~d~I~~~~~~~~~~~g~~ 183 (263)
T PRK09355 105 LELLAEVKPAVIRGNASEIAALAGEAA-ETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEVDYITDGERVVSVHNGHP 183 (263)
T ss_pred HHHHHhcCCcEecCCHHHHHHHhCCCc-ccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCCcEEEeCCEEEEEeCCCc
Confidence 55664 468999999999999999753 2344443334567888999999999999999999999999888777776667
Q ss_pred cCCCccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCC-CccccHHHHHHHHhcCCHHHHhccccccc
Q 026308 160 MMQKITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAK-GPASLRMHMIDCLHGLDQAALLSRTNITA 238 (240)
Q Consensus 160 ~~~~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~-~~g~~~~~~~~~l~~~~~~~~~~~~~~~~ 238 (240)
.+.+++|+||+|+|++|++++++ .++.+|+..|+.+++.|++.+.++.. |+|++..+++|+|+.+..+++.+..++++
T Consensus 184 ~~~~v~GtGc~L~~~iaa~lA~g-~~~~~A~~~A~~~~~~a~~~a~~~~~~g~gsf~~~l~d~l~~~~~~~~~~~~~~~~ 262 (263)
T PRK09355 184 LMTKVTGTGCLLSAVVAAFAAVE-KDYLEAAAAACAVYGIAGELAAERSEKGPGSFQPAFLDALYQLTEEDIAERAKVEE 262 (263)
T ss_pred ccCCcccccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhCCHHHHHhhcCeee
Confidence 77888999999999999999996 79999999999999999999887645 89999999999999999999999999886
Q ss_pred c
Q 026308 239 L 239 (240)
Q Consensus 239 ~ 239 (240)
+
T Consensus 263 ~ 263 (263)
T PRK09355 263 V 263 (263)
T ss_pred C
Confidence 4
No 4
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=100.00 E-value=6.5e-43 Score=286.65 Aligned_cols=225 Identities=48% Similarity=0.729 Sum_probs=203.0
Q ss_pred CchhhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH
Q 026308 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC 80 (240)
Q Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~ 80 (240)
++|+||++|++|++|+|+++++|+.++.+.+++++|+.|.+++++.+.+..+.+.+++.++|+||||++.+.+.+|.+..
T Consensus 20 ~n~~AN~~LA~GasPiMa~~~~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~ 99 (246)
T PF02110_consen 20 ANDVANALLAIGASPIMAEAPEEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFA 99 (246)
T ss_dssp HHHHHHHHHHCTSEEEE--STTTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHH
T ss_pred hhhHHHHHHHcCCCccccCCHHHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHH
Confidence 47999999999999999999999999999999999999999998899999999999999999999999999999999888
Q ss_pred HHHhc-cCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCCc
Q 026308 81 LELVQ-LKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGVP 159 (240)
Q Consensus 81 ~~~~~-~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~~ 159 (240)
+++++ .++++|+.|..|...|.|... ..+|+|...+..+..+.+++|+++++++|++||..|++.++++++.++++.+
T Consensus 100 ~~LL~~~~~~vIrGN~sEI~aLag~~~-~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~~D~Isdg~~~~~i~nG~~ 178 (246)
T PF02110_consen 100 LELLNNYKPTVIRGNASEIAALAGEDS-KAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGEVDYISDGNRVYRIPNGSP 178 (246)
T ss_dssp HHHHCHS--SEEEEEHHHHHHHHTCCC-CSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESSSEEEEESSCEEEECSSSG
T ss_pred HHHHHhCCCcEEEeCHHHHHHHhCcCC-CCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecCCcEEECCCeEEEeCCCCh
Confidence 99995 789999999999999999875 7789997555566789999999999999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhcCCH
Q 026308 160 MMQKITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQ 227 (240)
Q Consensus 160 ~~~~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~~~~ 227 (240)
.+.+++|+||++++++|+|++.. .++++|+..|+.+.+.|++.+.++..|+|+|...++|.|+.+.+
T Consensus 179 ~l~~itGtGC~lgaliaaf~av~-~d~~~aa~~a~~~~~~Age~A~~~~~gpGSF~~~llD~L~~l~~ 245 (246)
T PF02110_consen 179 LLSKITGTGCMLGALIAAFLAVA-EDPLEAAVAAVALYGIAGELAAEKSNGPGSFRVALLDALYNLTE 245 (246)
T ss_dssp GGGGSTTHHHHHHHHHHHHHCCC-SSHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HhcceeccchHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCcC
Confidence 99999999999999999999985 68999999999999999999998878999999999999998754
No 5
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=100.00 E-value=6.7e-37 Score=254.32 Aligned_cols=221 Identities=50% Similarity=0.727 Sum_probs=183.2
Q ss_pred CchhhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH
Q 026308 1 MDLVANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC 80 (240)
Q Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~ 80 (240)
|+++|+++|++|++++|.+.++++.+.++++|++++++|++.+...+.+..+++.+++.++|+|+||++.+..+++.+..
T Consensus 20 ~~~~a~~~~~~g~~~~~~~~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~ 99 (242)
T cd01170 20 MNFVANVLLAIGASPIMSDAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVA 99 (242)
T ss_pred HhHHHHHHHHhCCchhhcCCHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHH
Confidence 57899999999999999998889999999999999999998766667777777788889999999999877655543333
Q ss_pred HHHhcc-CCeEEcCCHHHHHHHHcCCCCCCcCCCCCCC-hHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCC
Q 026308 81 LELVQL-KPTVIRGNASEIIALSRASVGPTKGVDSSHE-SMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGV 158 (240)
Q Consensus 81 ~~~~~~-~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~-~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~ 158 (240)
.+++.. ++++||||..|+++|+|.+. ..++++.... .+++.+++++|++++++.|++||..++++++++.++++.+.
T Consensus 100 ~~ll~~~~~~ilTPN~~Ea~~L~g~~~-~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~d~l~~~~~~~~~~~~~ 178 (242)
T cd01170 100 KELLAEGQPTVIRGNASEIAALAGLTG-LGKGVDSSSSDEEDALELAKALARKYGAVVVVTGEVDYITDGERVVVVKNGH 178 (242)
T ss_pred HHHHhcCCCeEEcCCHHHHHHHhCCCC-CcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECCCcEEEECCEEEEEeCCC
Confidence 455543 58999999999999999764 1111111011 56788899999999988899999989988877788777655
Q ss_pred ccCCCccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHh
Q 026308 159 PMMQKITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLH 223 (240)
Q Consensus 159 ~~~~~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~ 223 (240)
+.+.+++|+||+|+|++|++++++ .++.+|+..|..++..+++.+.+...|+|+++.+++|.||
T Consensus 179 ~~~~~v~GtGdtLa~aiAa~LA~g-~~~~~A~~~A~~~~~~a~~~a~~~~~~~~~~~~~l~d~l~ 242 (242)
T cd01170 179 PLLTKITGTGCLLGAVIAAFLAVG-DDPLEAAVSAVLVYGIAGELAAERAKGPGSFRVALLDELY 242 (242)
T ss_pred ccccCCCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC
Confidence 666667999999999999999996 8999999999999999999888765679999999999986
No 6
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.96 E-value=2.5e-28 Score=202.22 Aligned_cols=179 Identities=27% Similarity=0.336 Sum_probs=137.9
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHH-h-ccCCeEEcCCHHHHHHH
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLEL-V-QLKPTVIRGNASEIIAL 101 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~-~-~~~~~vitPN~~E~~~L 101 (240)
+.+.++++|+++||||+-.+.. ...+++...+...|+|+|++++.. .... . ...+.|+|||..|+++|
T Consensus 61 ~~~~~~~~~av~iGPGlg~~~~---~~~~~~~~~~~~~p~VlDADaL~~-------l~~~~~~~~~~~IlTPH~gE~~rL 130 (242)
T PF01256_consen 61 ILELLEKADAVVIGPGLGRDEE---TEELLEELLESDKPLVLDADALNL-------LAENPKKRNAPVILTPHPGEFARL 130 (242)
T ss_dssp HHHHHCH-SEEEE-TT-SSSHH---HHHHHHHHHHHCSTEEEECHHHHC-------HHHCCCCSSSCEEEE-BHHHHHHH
T ss_pred hHhhhccCCEEEeecCCCCchh---hHHHHHHHHhhcceEEEehHHHHH-------HHhccccCCCCEEECCCHHHHHHH
Confidence 4456789999999999843322 234555556678899999999432 1121 1 14689999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEc-CcEEEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTD-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
++... ...++..+.+++++++++++||+||..+++++ ++++|.++.+++.+.. .|+||+|+|+|+++++
T Consensus 131 ~~~~~---------~~~~~~~~~a~~~a~~~~~~vvLKG~~t~I~~p~~~~~~n~~gn~~la~-gGsGDvLaGii~~lla 200 (242)
T PF01256_consen 131 LGKSV---------EIQEDRIEAAREFAKEYGAVVVLKGAVTIIASPGGRVYVNPTGNPGLAT-GGSGDVLAGIIAGLLA 200 (242)
T ss_dssp HTTTC---------HHCCSHHHHHHHHHHHHTSEEEEESTSSEEEEETSEEEEE----GGGSS-TTHHHHHHHHHHHHHH
T ss_pred hCCcc---------cchhhHHHHHHHHHhhcCcEEEEeCCCcEEEecCcceeEeCCCCCCCCC-CCcccHHHHHHHHHHH
Confidence 99764 12356788999999999999999999999877 7788888888899886 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhc
Q 026308 181 VDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHG 224 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~ 224 (240)
++ .++.+|+..|+++|++|++.+.++ .+.|+++.|+++.|++
T Consensus 201 q~-~~~~~Aa~~av~lHg~Ag~~~~~~-~~~~~~a~dli~~iP~ 242 (242)
T PF01256_consen 201 QG-YDPFEAACLAVYLHGRAGDLAAEK-YGRGMLASDLIDNIPK 242 (242)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHHHHCTT-CSSC--HHHHHHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHHHHHHHHHh-CCCcCcHHHHHHhcCC
Confidence 96 899999999999999999999987 5669999999999974
No 7
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.95 E-value=9.2e-27 Score=211.57 Aligned_cols=199 Identities=18% Similarity=0.241 Sum_probs=154.5
Q ss_pred ccCCC--CCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcC
Q 026308 16 AMLHT--IEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRG 93 (240)
Q Consensus 16 ~~~~~--~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitP 93 (240)
+|... .+++.++++++|++++|+|+..++.. ..+++.+++.++|+||||++....... +. . ..+.||||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~a~viGpGlg~~~~~---~~~~~~~~~~~~P~VLDAdaL~ll~~~----~~-~-~~~~VLTP 374 (508)
T PRK10565 304 LMVHELTPDSLEESLEWADVVVIGPGLGQQEWG---KKALQKVENFRKPMLWDADALNLLAIN----PD-K-RHNRVITP 374 (508)
T ss_pred eEEecCCHhHHHHHhhcCCEEEEeCCCCCCHHH---HHHHHHHHhcCCCEEEEchHHHHHhhC----cc-c-cCCeEECC
Confidence 55532 34566677889999999999755432 344466677889999999993210000 00 1 13689999
Q ss_pred CHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcC-cEEEEEecCCccCCCccchhhHHH
Q 026308 94 NASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDG-RRVVGAHNGVPMMQKITATGCSVT 172 (240)
Q Consensus 94 N~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~-~~~~~~~~~~~~~~~~~GaGD~la 172 (240)
|..|+++|++... + .-..+..+.+++++++++++||+||..++|+++ +.++.++.+.+.+.+ +|+||+|+
T Consensus 375 h~gE~~rL~~~~~---~-----~v~~~~~~~a~~~a~~~~~~vvlKG~~~iI~~~~~~~~~~~~G~~~ma~-~GsGDvLa 445 (508)
T PRK10565 375 HPGEAARLLGCSV---A-----EIESDRLLSARRLVKRYGGVVVLKGAGTVIAAEPDALAIIDVGNAGMAS-GGMGDVLS 445 (508)
T ss_pred CHHHHHHHhCCCh---h-----hhhhhHHHHHHHHHHHhCCEEEEeCCCcEEEcCCceEEEECCCCCCCCC-CChHHHHH
Confidence 9999999998543 1 111256678889999999999999999999875 567888888888887 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhcCCHHHHhcc
Q 026308 173 ALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQAALLSR 233 (240)
Q Consensus 173 g~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 233 (240)
|+|+++++++ .++.+|+..|+++|+.|++.++++..++|+++.+++|.|+.+.+.+|...
T Consensus 446 GiIaalla~g-~~~~~Aa~~a~~lhg~Ag~~a~~~~~~~g~~a~dlid~L~~~~~~~~~~~ 505 (508)
T PRK10565 446 GIIGALLGQK-LSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVIDK 505 (508)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHhHhhccc
Confidence 9999999996 89999999999999999998876534689999999999999888777643
No 8
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.95 E-value=3.9e-26 Score=191.45 Aligned_cols=183 Identities=23% Similarity=0.249 Sum_probs=139.3
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHc
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSR 103 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g 103 (240)
+.+.+.+.|++++|+|+++. +.+..+++.+++++.|+|+||++........ ...+..++++||||..|+++|+|
T Consensus 71 ~~~~~~~~d~v~ig~gl~~~---~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~---~~~~~~~~~iltPn~~E~~~L~g 144 (254)
T cd01171 71 LLELLERADAVVIGPGLGRD---EEAAEILEKALAKDKPLVLDADALNLLADEP---SLIKRYGPVVLTPHPGEFARLLG 144 (254)
T ss_pred HHhhhccCCEEEEecCCCCC---HHHHHHHHHHHhcCCCEEEEcHHHHHhhcCh---hhhccCCCEEECCCHHHHHHHhC
Confidence 34566789999999998654 4567788888888999999999832111110 00122468999999999999999
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
.+. + ...+++.+.++++.++++..||+||..++++++++.+++........+++|+||+|+|+++++++++
T Consensus 145 ~~~------~--~~~~~~~~~a~~l~~~~~~~vvlkG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g- 215 (254)
T cd01171 145 ALV------E--EIQADRLAAAREAAAKLGATVVLKGAVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQG- 215 (254)
T ss_pred CCh------h--hhhhHHHHHHHHHHHHcCcEEEEcCCCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcC-
Confidence 764 0 1234567888999998888889999888888764444444333334457999999999999999996
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCL 222 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l 222 (240)
.++.+|+++|+.+++.|++.+.++ .+.+..+.++++.+
T Consensus 216 ~~~~eA~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ 253 (254)
T cd01171 216 LSPLEAAALAVYLHGLAGDLAAKK-KGAGLTAADLVAEI 253 (254)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-cCCCcCHHHHHhhc
Confidence 899999999999999999988775 56788888888775
No 9
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.95 E-value=4.7e-26 Score=192.80 Aligned_cols=191 Identities=20% Similarity=0.258 Sum_probs=147.9
Q ss_pred ccCCCC----CchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEE
Q 026308 16 AMLHTI----EEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVI 91 (240)
Q Consensus 16 ~~~~~~----~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vi 91 (240)
+|.... +++.+.++.+|++++++|++++.. +..+++.+++.+.|+|+||++.. +. ........++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~davvig~Gl~~~~~---~~~l~~~~~~~~~pvVlDa~g~~---l~--~~~~~~~~~~~vI 145 (272)
T TIGR00196 74 LIVHRLGWKVDEDEELLERYDVVVIGPGLGQDPS---FKKAVEEVLELDKPVVLDADALN---LL--TYDKPKREGEVIL 145 (272)
T ss_pred EEEecchhhHHHHHhhhccCCEEEEcCCCCCCHH---HHHHHHHHHhcCCCEEEEhHHHH---HH--hhcccccCCCEEE
Confidence 666543 244556678999999999876543 57788888888999999998721 11 0000112468999
Q ss_pred cCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcC-cEEEEEecCCccCCCccchhhH
Q 026308 92 RGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDG-RRVVGAHNGVPMMQKITATGCS 170 (240)
Q Consensus 92 tPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~-~~~~~~~~~~~~~~~~~GaGD~ 170 (240)
|||..|+++|+|.+. .+.+++.+++++|+++++++|++||..++++++ +..|..+.+.+. .+++|+||+
T Consensus 146 tPN~~El~~L~g~~~---------~~~~~~~~aa~~l~~~~~~vVv~kG~~~~i~~~~~~~~~~~~~~~~-~~~~GaGD~ 215 (272)
T TIGR00196 146 TPHPGEFKRLLGLVN---------EIQGDRLEAAQDIAQKLQAVVVLKGAADVIAAPDGDLWINKTGNAA-LAKGGTGDV 215 (272)
T ss_pred CCCHHHHHHHhCCch---------hhhhhHHHHHHHHHHHhCCEEEEcCCCCEEEcCCCeEEEECCCCCc-cCCCCchHH
Confidence 999999999999754 345678899999999988889999999888765 456666544444 346999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCC-ccccHHHHHHHHhcCC
Q 026308 171 VTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKG-PASLRMHMIDCLHGLD 226 (240)
Q Consensus 171 lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~-~g~~~~~~~~~l~~~~ 226 (240)
|+|+++++++++ .++.+|+..|+.++..|++.+.++ .| .+..+.|+++.|+.++
T Consensus 216 lag~iaa~la~g-~~~~~A~~~a~~~~~~a~~~~~~~-~g~~~~~~~dl~~~i~~~~ 270 (272)
T TIGR00196 216 LAGLIGGLLAQN-LDPFDAACNAAFAHGLAGDLALKN-HGAYGLTALDLIEKIPRVC 270 (272)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHHHHHH
Confidence 999999999996 899999999999999999988775 44 6788999999998654
No 10
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.9e-26 Score=191.32 Aligned_cols=181 Identities=27% Similarity=0.345 Sum_probs=141.9
Q ss_pred hcccCcEEEecCCC-CCChHHHHHHHHHHHHhcC-CCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 28 TPHVRALYVNVGTL-SANWLPSMKAAAQLASQLG-KPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 28 ~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.++.|++++|+|+- .++..+.+.+++ +.. +|+|+|++++.... ....+...+..|+|||..|+++|++.+
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~l----~~~~~p~ViDADaL~~la----~~~~~~~~~~~VlTPH~gEf~rL~g~~ 170 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKELL----SSDLKPLVLDADALNLLA----ELPDLLDERKVVLTPHPGEFARLLGTE 170 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHH----hccCCCEEEeCcHHHHHH----hCcccccCCcEEECCCHHHHHHhcCCc
Confidence 36799999999994 443444444443 333 89999999943100 011222223489999999999999965
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCccEEEcCc-EEEEEecCCccCCCccchhhHHHHHHHHHHhcCCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAVDIVTDGR-RVVGAHNGVPMMQKITATGCSVTALIAAFVAVDPL 184 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~~~i~~~~-~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~~ 184 (240)
. + +...+..+.+++++++++++||+||..++|++++ +.+.++.+++.+.. .|+||+|+|+++++|+++..
T Consensus 171 ~------~--~~~~~r~~~a~~~a~~~~~vvVLKG~~tvI~~~~g~~~~n~~G~~~ma~-GGtGDvLaGii~alLAq~~~ 241 (284)
T COG0063 171 V------D--EIEVDRLEAARELAAKYGAVVVLKGAVTVIADPDGEVFVNPTGNPGMAT-GGTGDVLAGIIGALLAQGPA 241 (284)
T ss_pred c------c--ccccchHHHHHHHHHHcCCEEEEeCCCCEEEcCCCcEEEcCCCCHHhcc-CcchHHHHHHHHHHHhCCCC
Confidence 4 1 3345677889999999999999999999999866 78888888888886 99999999999999998522
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhcCCH
Q 026308 185 HAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQ 227 (240)
Q Consensus 185 ~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~~~~ 227 (240)
++++|+..|+++|+.|++.+.++ .+ ++.+.|+++.++++.+
T Consensus 242 ~~~~Aa~~g~~~h~~ag~la~~~-~g-~~~a~Dl~~~ip~~~~ 282 (284)
T COG0063 242 DPLEAAAAGAWLHGRAGELAAKK-HG-GLTATDLIEAIPRALK 282 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhc-cC-CCCHHHHHHHHHHHHh
Confidence 68899999999999999999886 45 8999999999998764
No 11
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.94 E-value=4.4e-25 Score=181.77 Aligned_cols=166 Identities=30% Similarity=0.319 Sum_probs=132.5
Q ss_pred cccCcEEEecCCCCCChHHHHHHHHHHHHhcC-CCEEEcccccCCcccch---HHH----HHHhccCCeEEcCCHHHHHH
Q 026308 29 PHVRALYVNVGTLSANWLPSMKAAAQLASQLG-KPWVLDPVAAGASGFRL---NAC----LELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 29 ~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~~~~---~~~----~~~~~~~~~vitPN~~E~~~ 100 (240)
+..++-.++.||+.+. +.++.+.+.+++++ .|+|+||+++..++..+ +.. ++++ +.++++|||..|++.
T Consensus 69 ~D~~v~avKtGML~~~--eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~Ll-P~a~vvTPNl~EA~~ 145 (263)
T COG0351 69 SDIPVDAVKTGMLGSA--EIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELL-PLATVVTPNLPEAEA 145 (263)
T ss_pred hcCCCCEEEECCcCCH--HHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhh-ccCeEecCCHHHHHH
Confidence 4556667899997543 56677888888888 88999999998876432 222 2344 589999999999999
Q ss_pred HHcC-CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC------ccEEEcCcEEEEEecCCccCCCccchhhHHHH
Q 026308 101 LSRA-SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA------VDIVTDGRRVVGAHNGVPMMQKITATGCSVTA 173 (240)
Q Consensus 101 L~g~-~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~------~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag 173 (240)
|+|. ++ .+.+++.++++.+.+.+...||+||+ .|++++++..+.++.+.....++||+||+|++
T Consensus 146 L~g~~~i---------~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSa 216 (263)
T COG0351 146 LSGLPKI---------KTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSA 216 (263)
T ss_pred HcCCCcc---------CCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHH
Confidence 9995 55 57788888888787878888999975 36778877777777665555668999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 174 LIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 174 ~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+|+++|++| +++.+|++.|..|...|++....-
T Consensus 217 AIaa~LA~G-~~l~~AV~~Ak~fv~~AI~~~~~~ 249 (263)
T COG0351 217 AIAANLAKG-LSLEEAVKKAKEFVTRAIRDSLAI 249 (263)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHhhhccC
Confidence 999999996 899999999999999999955443
No 12
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.90 E-value=3.4e-22 Score=166.76 Aligned_cols=168 Identities=23% Similarity=0.260 Sum_probs=116.9
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccc---hHH---HHH-HhccCCeEEcCCHHHHHHHH
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFR---LNA---CLE-LVQLKPTVIRGNASEIIALS 102 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~---~~~---~~~-~~~~~~~vitPN~~E~~~L~ 102 (240)
..|++. .|++.+. +.++.+.+.+++.+.++|+||++.+.++.. .+. .++ ++ +.+++||||..|++.|+
T Consensus 60 ~~~aik--iG~l~~~--~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Ll-p~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIK--IGYLGSA--EQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELL-PLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEE--E-S-SSH--HHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCG-GG-SEEE-BHHHHHHHH
T ss_pred cccEEE--EcccCCc--hhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccC-CcCeEEeCCHHHHHHHh
Confidence 455555 6786332 344555566666778999999998765532 112 222 44 48999999999999999
Q ss_pred cCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc---------cEEEcCcEEEEEecCCccCCCccchhhHHHH
Q 026308 103 RASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV---------DIVTDGRRVVGAHNGVPMMQKITATGCSVTA 173 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~---------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag 173 (240)
|.++ .+.+++.+++++|.+.+...||+||.. ++++++++.+.+..+.....+++|+||+|++
T Consensus 135 g~~i---------~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss 205 (246)
T PF08543_consen 135 GREI---------NSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSS 205 (246)
T ss_dssp TS-----------SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHH
T ss_pred CCCC---------CChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHH
Confidence 9876 577899999999999777889999652 3445666766665443332567999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCcc
Q 026308 174 LIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPA 212 (240)
Q Consensus 174 ~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g 212 (240)
+++++|++| .++.+|++.|..+...+++.+.+...|.|
T Consensus 206 ~laa~l~~g-~~l~~Av~~A~~~v~~~i~~t~~~g~~~~ 243 (246)
T PF08543_consen 206 ALAAFLAKG-YSLEEAVEKAKNFVRRAIKNTIQLGMGAG 243 (246)
T ss_dssp HHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHCTSSS-
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999996 89999999999999999998877533433
No 13
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.90 E-value=8.3e-22 Score=165.24 Aligned_cols=167 Identities=26% Similarity=0.281 Sum_probs=126.1
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCC-CEEEcccccCCcccch---HH---H-HHHhccCCeEEcCCHHHH
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK-PWVLDPVAAGASGFRL---NA---C-LELVQLKPTVIRGNASEI 98 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~-~vvlDp~~~~~~~~~~---~~---~-~~~~~~~~~vitPN~~E~ 98 (240)
+++..++-.++.|++.+. +.++.+++.+++++. |+|+||++...++... +. . .+++ +++++||||..|+
T Consensus 62 ~~~d~~~~aikiG~l~~~--~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll-~~~dvitpN~~Ea 138 (254)
T TIGR00097 62 VFSDIPVDAAKTGMLASA--EIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLL-PLATLITPNLPEA 138 (254)
T ss_pred HHhCCCCCEEEECCcCCH--HHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhcc-ccccEecCCHHHH
Confidence 344556667788997443 566788888888888 7999999765433211 11 1 1233 4789999999999
Q ss_pred HHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc-------cEEEcCcEEEEEecCCccCCCccchhhHH
Q 026308 99 IALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV-------DIVTDGRRVVGAHNGVPMMQKITATGCSV 171 (240)
Q Consensus 99 ~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~-------~~i~~~~~~~~~~~~~~~~~~~~GaGD~l 171 (240)
+.|+|.+. .+.+++.+++++|.+.+...|++||.. ++++++++.++++.++....+++|+||+|
T Consensus 139 ~~L~g~~~---------~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f 209 (254)
T TIGR00097 139 EALLGTKI---------RTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTL 209 (254)
T ss_pred HHHhCCCC---------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHH
Confidence 99999765 455678888999987777779999542 35566666666665555555679999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 026308 172 TALIAAFVAVDPLHAFEATASALSVYGIAGEMGMS 206 (240)
Q Consensus 172 ag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~ 206 (240)
+|+++++++++ .++.+|+++|..+...+.+.+.+
T Consensus 210 ~aalaa~la~g-~~l~eA~~~A~~~~~~~i~~~~~ 243 (254)
T TIGR00097 210 SAAIAANLAKG-LSLKEAVKEAKEFVTGAIRYGLN 243 (254)
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999996 89999999999999999987755
No 14
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=5.7e-22 Score=160.18 Aligned_cols=198 Identities=15% Similarity=0.163 Sum_probs=148.2
Q ss_pred CCCchhhhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHH
Q 026308 20 TIEEIPDFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASE 97 (240)
Q Consensus 20 ~~~~~~~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E 97 (240)
.++.+++++++.+++|||+|+ .++...+.+..++++++.+++|+|+|+++++...-+ ...++. +...|+|||..|
T Consensus 91 av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~---~e~l~~~~~~viLTPNvvE 167 (306)
T KOG3974|consen 91 AVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQL---PERLIGGYPKVILTPNVVE 167 (306)
T ss_pred hHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhc---hhhhhccCceeeeCCcHHH
Confidence 344566789999999999999 567677888999999999999999999997643222 223554 345899999999
Q ss_pred HHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHh-cCCEEEEecCccEEEc-CcEEEEEecCCccCCCccchhhHHHHHH
Q 026308 98 IIALSRASVGPTKGVDSSHESMDAMEAARCLAEA-SGAIVAVSGAVDIVTD-GRRVVGAHNGVPMMQKITATGCSVTALI 175 (240)
Q Consensus 98 ~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~-~~~~VvitG~~~~i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~i 175 (240)
+++|.+... +..++. ...+.|..+ .+..|+-||..|.+.. +.+++..+. .....++.|.||+++|.+
T Consensus 168 FkRLcd~~l------~~~d~~----~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~-eGs~kRcGGQGDiLaGsl 236 (306)
T KOG3974|consen 168 FKRLCDAEL------DKVDSH----SQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCST-EGSLKRCGGQGDILAGSL 236 (306)
T ss_pred HHHHHHHhh------ccccch----HHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccC-CCCccccCCCcchhhhHH
Confidence 999998642 111122 233444444 4567888999996654 445555442 445678999999999999
Q ss_pred HHHHhcC-----CCC--HHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhcCCHHHHhc
Q 026308 176 AAFVAVD-----PLH--AFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHGLDQAALLS 232 (240)
Q Consensus 176 aa~la~~-----~~~--~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~~~~~~~~~ 232 (240)
|.|+++. +.+ .+.|+..++.+..+|...++++ .|+.++..|+.+++..++..++..
T Consensus 237 a~fl~w~k~~~~e~~~~~~~a~~a~s~~vr~a~rlafk~-~gR~ll~~d~~~~v~~i~~~~~~~ 299 (306)
T KOG3974|consen 237 ATFLSWAKLLSGEQDSAAFLAAVAGSIMVRRAGRLAFKR-HGRSLLTSDIPEEVGTIFKSEMED 299 (306)
T ss_pred HHHHHHHHhccCCccchhhhhhhhhHHHHHHHHHhhhhh-cCcccccchhHHHHhhhhhHHhhh
Confidence 9999872 122 5688889999999999999997 788999999999888887766554
No 15
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.88 E-value=5.9e-21 Score=161.08 Aligned_cols=173 Identities=21% Similarity=0.136 Sum_probs=139.0
Q ss_pred hcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCC
Q 026308 28 TPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASV 106 (240)
Q Consensus 28 ~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~ 106 (240)
++..|.||+. |+ |+.-..+.|.++++.+++.++++++|.++ ..+.+.++.+|++||||..|++.|+|.+.
T Consensus 127 l~~~d~Vvls-GSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg--------~~L~~~L~~~P~lIKPN~~EL~~~~g~~~ 197 (310)
T COG1105 127 LESDDIVVLS-GSLPPGVPPDAYAELIRILRQQGAKVILDTSG--------EALLAALEAKPWLIKPNREELEALFGREL 197 (310)
T ss_pred cccCCEEEEe-CCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh--------HHHHHHHccCCcEEecCHHHHHHHhCCCC
Confidence 4568888886 55 66667899999999999999999999998 34456666679999999999999999987
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCc-cEEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCCC
Q 026308 107 GPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAV-DIVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDPL 184 (240)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~-~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~~ 184 (240)
.+.+|.++++++|..++-..||++ |+. .++.++++.|+..+++..+.+++|+||++.|.+.+.+.++ .
T Consensus 198 ---------~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~-~ 267 (310)
T COG1105 198 ---------TTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKG-K 267 (310)
T ss_pred ---------CChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcC-C
Confidence 566788999999888887788888 765 4678888899888666677788999999977777777775 8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHhc
Q 026308 185 HAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLHG 224 (240)
Q Consensus 185 ~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~~ 224 (240)
++++++++|+++...++. ..+.+.+..+.++.++.
T Consensus 268 ~~e~~l~~avA~g~a~~~-----~~~~~~~~~~~~~~~~~ 302 (310)
T COG1105 268 SLEEALRFAVACGAAAAS-----QKGTGIPDLDQLKKIYA 302 (310)
T ss_pred CHHHHHHHHHHHHHHHhh-----cCCCCCCCHHHHHHHhh
Confidence 999999999987554322 24677777766666653
No 16
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.88 E-value=1.1e-20 Score=159.83 Aligned_cols=167 Identities=21% Similarity=0.183 Sum_probs=122.0
Q ss_pred cccCcEEEecCCCCCChHHHHHHHHHHHHhcC-CCEEEcccccCCcc---cchHH---HHHHhccCCeEEcCCHHHHHHH
Q 026308 29 PHVRALYVNVGTLSANWLPSMKAAAQLASQLG-KPWVLDPVAAGASG---FRLNA---CLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 29 ~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~---~~~~~---~~~~~~~~~~vitPN~~E~~~L 101 (240)
+..+.=.++.|++.+. +.++.+.+.+++++ .++|+||++.+.++ ...+. .++.+.+.+++||||..|++.|
T Consensus 71 ~d~~~~aikiG~l~s~--~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 71 DGIGVDAMKTGMLPTV--DIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred cCCCCCEEEECCCCCH--HHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 3333444567887443 55677777777776 47999999965432 12211 2232224789999999999999
Q ss_pred HcC-CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC-c-------cEEEcCcEEEEEecCCccCCCccchhhHHH
Q 026308 102 SRA-SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA-V-------DIVTDGRRVVGAHNGVPMMQKITATGCSVT 172 (240)
Q Consensus 102 ~g~-~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~-~-------~~i~~~~~~~~~~~~~~~~~~~~GaGD~la 172 (240)
+|. +. .+.+++.+++++|.+.+...||+||. . ++++++++.+.++.+.....+++|+||+|+
T Consensus 149 ~g~~~~---------~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fs 219 (270)
T PRK12616 149 SGMGEI---------KTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFS 219 (270)
T ss_pred cCCCCC---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHH
Confidence 996 33 45677888899998877778999953 2 255666665656655555556799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 173 ALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 173 g~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
++++++++++ .++.+|+++|..+...+.+.+.+.
T Consensus 220 aalaa~l~~g-~~l~~Av~~A~~~~~~~i~~s~~~ 253 (270)
T PRK12616 220 AAVTAELAKG-SEVKEAIYAAKEFITAAIKESFPL 253 (270)
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999996 899999999999999999987664
No 17
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.87 E-value=1.6e-20 Score=158.66 Aligned_cols=169 Identities=21% Similarity=0.167 Sum_probs=123.4
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCC-EEEcccccCCccc---chHH---HH-HHhccCCeEEcCCHHH
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKP-WVLDPVAAGASGF---RLNA---CL-ELVQLKPTVIRGNASE 97 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~-vvlDp~~~~~~~~---~~~~---~~-~~~~~~~~vitPN~~E 97 (240)
.+++...+=.++.|++.+. +.++.+++.+++.+.+ +|+||++.+.++. .... .+ +++ +++++||||..|
T Consensus 66 ~l~~d~~~~~ikiG~l~~~--~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll-~~advitpN~~E 142 (268)
T PRK12412 66 TTIEGVGVDALKTGMLGSV--EIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLV-PKALVVTPNLFE 142 (268)
T ss_pred HHHhCCCCCEEEECCCCCH--HHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhh-ccceEEcCCHHH
Confidence 3344422334446786432 5567788888888775 9999998766542 1111 12 244 489999999999
Q ss_pred HHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc--------cEEEcCcEEEEEecCCccCCCccchhh
Q 026308 98 IIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV--------DIVTDGRRVVGAHNGVPMMQKITATGC 169 (240)
Q Consensus 98 ~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD 169 (240)
++.|+|.++ .+.+++.+++++|.+.+...|++||.. +++++++..+.++.++....+++|+||
T Consensus 143 a~~L~g~~~---------~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD 213 (268)
T PRK12412 143 AYQLSGVKI---------NSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGC 213 (268)
T ss_pred HHHHhCcCC---------CCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHH
Confidence 999999765 456788889999988777789999432 244555555556655545556799999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 170 SVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 170 ~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+|+|++++++++| .++.+|+++|..+...+.+.+.+.
T Consensus 214 ~f~aa~aa~l~~g-~~l~eA~~~A~~~~~~~i~~~~~~ 250 (268)
T PRK12412 214 TYSAAITAELAKG-KPVKEAVKTAKEFITAAIRYSFKI 250 (268)
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999996 899999999999999999877664
No 18
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.87 E-value=1.5e-20 Score=156.38 Aligned_cols=159 Identities=26% Similarity=0.256 Sum_probs=116.0
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHHHhc-CCCEEEcccccCCccc---chHHH----HHHhccCCeEEcCCHHHHHHHHc
Q 026308 32 RALYVNVGTLSANWLPSMKAAAQLASQL-GKPWVLDPVAAGASGF---RLNAC----LELVQLKPTVIRGNASEIIALSR 103 (240)
Q Consensus 32 d~vvi~~G~~~~~~~~~~~~~~~~~~~~-~~~vvlDp~~~~~~~~---~~~~~----~~~~~~~~~vitPN~~E~~~L~g 103 (240)
++-++..|++.+. +.++.+.+.+++. +.++|+||++.+.++. ..+.. ..++ .++++||||..|++.|+|
T Consensus 68 ~~~~i~~G~l~~~--~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll-~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGMLGSA--EIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLL-PLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCCCCH--HHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhh-ccCeEEeCCHHHHHHHhC
Confidence 3444456886532 4556777777776 8899999998654432 11111 2233 478999999999999999
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc-------cEEEcCcEEEEEecCCccCCCccchhhHHHHHHH
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV-------DIVTDGRRVVGAHNGVPMMQKITATGCSVTALIA 176 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~-------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~ia 176 (240)
.+. .+.++..++++++.+++...||+||.. ++++++++.++++.++....+++|+||+|+|+++
T Consensus 145 ~~~---------~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 145 LEI---------ATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCC---------CCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHH
Confidence 765 344566678888888777789999542 2556666666666555445678999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 026308 177 AFVAVDPLHAFEATASALSVYGIAGEM 203 (240)
Q Consensus 177 a~la~~~~~~~~A~~~A~~~~~~a~~~ 203 (240)
+++++| .++.+|+++|..+...+.+.
T Consensus 216 a~l~~g-~~~~~A~~~A~~~~~~~i~~ 241 (242)
T cd01169 216 ANLAKG-LSLEEAVREAKEYVTQAIRN 241 (242)
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHHHc
Confidence 999996 89999999999999887753
No 19
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.87 E-value=1.6e-20 Score=158.47 Aligned_cols=162 Identities=25% Similarity=0.262 Sum_probs=118.8
Q ss_pred cCcEEEecCCCCCChHHHHHHHHHHHHhcCC-CEEEcccccCCcccc---hHH---HH-HHhccCCeEEcCCHHHHHHHH
Q 026308 31 VRALYVNVGTLSANWLPSMKAAAQLASQLGK-PWVLDPVAAGASGFR---LNA---CL-ELVQLKPTVIRGNASEIIALS 102 (240)
Q Consensus 31 ~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~-~vvlDp~~~~~~~~~---~~~---~~-~~~~~~~~vitPN~~E~~~L~ 102 (240)
.+++. .|++.+ .+.++.+++.+++.+. ++|+||++.+.++.. .+. .+ +++ +.+++||||..|++.|+
T Consensus 74 ~~ai~--iG~l~~--~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll-~~~dvitpN~~Ea~~L~ 148 (266)
T PRK06427 74 IDAVK--IGMLAS--AEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLL-PLATLITPNLPEAEALT 148 (266)
T ss_pred CCEEE--ECCcCC--HHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhh-CcCeEEcCCHHHHHHHh
Confidence 45555 567543 2556777777887775 899999987654321 111 12 244 47899999999999999
Q ss_pred cCCCCCCcCCCCCCChH-HHHHHHHHHHHhcCCEEEEecCc--------cEEEcCcEEEEEecCCccCCCccchhhHHHH
Q 026308 103 RASVGPTKGVDSSHESM-DAMEAARCLAEASGAIVAVSGAV--------DIVTDGRRVVGAHNGVPMMQKITATGCSVTA 173 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~-~~~~~a~~l~~~~~~~VvitG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag 173 (240)
|.+. .+.+ ++.+++++|.+.+...||+||.. ++++++++.+.++.+.....+++|+||+|+|
T Consensus 149 g~~~---------~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a 219 (266)
T PRK06427 149 GLPI---------ADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSA 219 (266)
T ss_pred CCCC---------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHH
Confidence 9764 2333 37788888887777789999543 2566666666666544445577999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 174 LIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 174 ~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+++++++++ .++.+|+++|..+...+.+.+.+.
T Consensus 220 ~l~~~l~~g-~~l~~A~~~A~~~~~~~i~~~~~~ 252 (266)
T PRK06427 220 AIAAELAKG-ASLLDAVQTAKDYVTRAIRHALEI 252 (266)
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999996 899999999999999999887664
No 20
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.86 E-value=3.4e-20 Score=158.56 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=115.8
Q ss_pred cccCcEEEecCCCCCChHHHHHHHHHHHHhc------CCCEEEcccccCCcccch----HHH----HHHhccCCeEEcCC
Q 026308 29 PHVRALYVNVGTLSANWLPSMKAAAQLASQL------GKPWVLDPVAAGASGFRL----NAC----LELVQLKPTVIRGN 94 (240)
Q Consensus 29 ~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~------~~~vvlDp~~~~~~~~~~----~~~----~~~~~~~~~vitPN 94 (240)
.....=+++.||+.+. +.++.+.+.++++ ..|+|+||++..+++..+ +.. +.++ +..++||||
T Consensus 70 ~D~~i~aIKiGmL~s~--e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Ll-p~a~viTPN 146 (321)
T PTZ00493 70 ADVTIDVVKLGVLYSK--KIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLIC-PISCIITPN 146 (321)
T ss_pred hCCCCCEEEECCcCCH--HHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhh-ccCEEECCC
Confidence 3445567899997442 3344454444443 224999999988766432 122 2244 589999999
Q ss_pred HHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHh-cCCEEEEecCc--------------cEEEcC-----------
Q 026308 95 ASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEA-SGAIVAVSGAV--------------DIVTDG----------- 148 (240)
Q Consensus 95 ~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~-~~~~VvitG~~--------------~~i~~~----------- 148 (240)
..|++.|+|..- . ..+ .+.+++.+++++|.++ +...|++||++ |++++.
T Consensus 147 ~~Ea~~L~g~~~-~--~~~--~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~ 221 (321)
T PTZ00493 147 FYECKVILEALD-C--QMD--LSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQ 221 (321)
T ss_pred HHHHHHHhCCCc-c--cCC--CCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccccccccc
Confidence 999999998210 0 001 1346788899999876 55679999743 244321
Q ss_pred ----c------EEEEEecCCccCCCccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 149 ----R------RVVGAHNGVPMMQKITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 149 ----~------~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+ ..+.+..++....+++|+||+|+++||++|++| +++.+|++.|..|...+++.+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G-~~l~~Av~~A~~fv~~aI~~s~~~ 289 (321)
T PTZ00493 222 QIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKK-HNILQSCIESKKYIYNCIRYAYPF 289 (321)
T ss_pred ccccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 123444333333567999999999999999996 899999999999999999987654
No 21
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.85 E-value=2.4e-20 Score=156.31 Aligned_cols=163 Identities=20% Similarity=0.136 Sum_probs=120.2
Q ss_pred ccCcEEEecCCC-CCChHHHHHHHHHHHHhc--CCCEEEcccccCCcccc---h---HHHHHHhccCCeEEcCCHHHHHH
Q 026308 30 HVRALYVNVGTL-SANWLPSMKAAAQLASQL--GKPWVLDPVAAGASGFR---L---NACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 30 ~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~--~~~vvlDp~~~~~~~~~---~---~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
..++++ .|++ +....+.+.++++.+++. ++++|+||++.+.+... . ...++++.++++++|||..|++.
T Consensus 72 ~~~~v~--~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 72 EYDAVL--TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred cCCEEE--EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 455554 6774 556677888888888876 89999999875433221 1 12344454489999999999999
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc-------c-EEEcCcEEEEEecCCcc-CCCccchhhHH
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV-------D-IVTDGRRVVGAHNGVPM-MQKITATGCSV 171 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~-------~-~i~~~~~~~~~~~~~~~-~~~~~GaGD~l 171 (240)
|+|.+. .+.++..+.+++|.+++...|++||.. + +++++++.+..+.+... ..+++|+||+|
T Consensus 150 l~g~~~---------~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f 220 (254)
T cd01173 150 LTGKKI---------NDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLF 220 (254)
T ss_pred HcCCCc---------CCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHH
Confidence 999865 456778888999988887789999432 2 34554444444433333 36779999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Q 026308 172 TALIAAFVAVDPLHAFEATASALSVYGIAGEMG 204 (240)
Q Consensus 172 ag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a 204 (240)
+|++++.++++ .++.+|+++|..+...+.+.+
T Consensus 221 ~a~~~~~l~~g-~~~~~a~~~A~~~~~~~i~~~ 252 (254)
T cd01173 221 AALLLARLLKG-KSLAEALEKALNFVHEVLEAT 252 (254)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHh
Confidence 99999999996 899999999999999888754
No 22
>PRK07105 pyridoxamine kinase; Validated
Probab=99.84 E-value=2.4e-19 Score=152.71 Aligned_cols=188 Identities=18% Similarity=0.111 Sum_probs=131.8
Q ss_pred ccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccccCCccc----chH---HHHHHhccCCeEEcCCHHHHHHH
Q 026308 30 HVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVAAGASGF----RLN---ACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 30 ~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~----~~~---~~~~~~~~~~~vitPN~~E~~~L 101 (240)
..|++. .|++ +.+..+.+.+.++.+++.++++|+||++.+.+.+ ..+ ..++++ +.+++||||..|++.|
T Consensus 75 ~~~aik--~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll-~~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIY--SGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLI-QKADVITPNLTEACLL 151 (284)
T ss_pred ccCEEE--ECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHH-hhCCEecCCHHHHHHH
Confidence 456555 6785 5555555566665556668899999998654321 111 233455 4899999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEec-----C-cc-EEEcC--cEEEEEecCCccCCCccchhhHHH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSG-----A-VD-IVTDG--RRVVGAHNGVPMMQKITATGCSVT 172 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG-----~-~~-~i~~~--~~~~~~~~~~~~~~~~~GaGD~la 172 (240)
+|.++. +...+.+++.+++++|.+.+...||+|| . .+ +++++ +..+..+.+.. ..+++|+||+|+
T Consensus 152 ~g~~~~-----~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~GaGD~f~ 225 (284)
T PRK07105 152 LDKPYL-----EKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYI-PAHYPGTGDIFT 225 (284)
T ss_pred cCCCcC-----cCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeeccc-CCCcCChhHHHH
Confidence 997640 0002456778888888877767899996 2 12 33443 34555543333 356799999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhhC--CCccccHHHHHHHHhcCCH
Q 026308 173 ALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSMA--KGPASLRMHMIDCLHGLDQ 227 (240)
Q Consensus 173 g~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~--~~~g~~~~~~~~~l~~~~~ 227 (240)
|++++.+++| .++.+|+++|..+...+++.+.... ..+|...+++++.|.....
T Consensus 226 aa~~~~l~~g-~~l~~av~~A~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~~~~ 281 (284)
T PRK07105 226 SVITGSLLQG-DSLPIALDRAVQFIEKGIRATLGLKYDLREGILLEKVLGYLIAPFQ 281 (284)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhcCCchhhCccHHHHHHHHHHHHH
Confidence 9999999996 8999999999999999998776642 2568888888888876544
No 23
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.83 E-value=3.8e-19 Score=151.25 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=119.0
Q ss_pred ccCcEEEecCCC-CCChHHHHHHHHHHHHh--cCCCEEEcccccCCcc--c-chHH---HH-HHhccCCeEEcCCHHHHH
Q 026308 30 HVRALYVNVGTL-SANWLPSMKAAAQLASQ--LGKPWVLDPVAAGASG--F-RLNA---CL-ELVQLKPTVIRGNASEII 99 (240)
Q Consensus 30 ~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~--~~~~vvlDp~~~~~~~--~-~~~~---~~-~~~~~~~~vitPN~~E~~ 99 (240)
++|++. .|++ +.+..+.+.+.++..+. .+.++|+||++.+.++ + ..+. .+ +++ ..+++||||..|++
T Consensus 88 ~~d~i~--~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll-~~advitPN~~Ea~ 164 (281)
T PRK08176 88 QLRAVT--TGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLL-PLAQGLTPNIFELE 164 (281)
T ss_pred cCCEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhH-hhcCEeCCCHHHHH
Confidence 567776 5776 54555555555555443 3688999999877654 1 1111 22 344 48999999999999
Q ss_pred HHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC-cc--------EEEcCcEEEEEecCCccCCCccchhhH
Q 026308 100 ALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA-VD--------IVTDGRRVVGAHNGVPMMQKITATGCS 170 (240)
Q Consensus 100 ~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~-~~--------~i~~~~~~~~~~~~~~~~~~~~GaGD~ 170 (240)
.|+|.++ .+.+++.+.+++|.+.+...||+||. .+ +++++++.+..+.+ ....+++|+||+
T Consensus 165 ~L~g~~~---------~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GaGD~ 234 (281)
T PRK08176 165 ILTGKPC---------RTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVISHP-RVDTDLKGTGDL 234 (281)
T ss_pred HHhCCCC---------CCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEecC-ccCCCCCChhHH
Confidence 9999765 45667888899998877777999953 32 34555554444433 333567999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 171 VTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 171 lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
|+|++++.+++| .++.+|+++|..+...+.+.+.+.
T Consensus 235 faa~~~a~l~~g-~~l~~Av~~A~~~v~~~i~~t~~~ 270 (281)
T PRK08176 235 FCAELVSGLLKG-KALTDAAHRAGLRVLEVMRYTQQA 270 (281)
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999996 899999999999999999877654
No 24
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.83 E-value=5.1e-19 Score=161.69 Aligned_cols=168 Identities=24% Similarity=0.225 Sum_probs=124.0
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCC-CEEEcccccCCcccch---HH---H-HHHhccCCeEEcCCHHHH
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK-PWVLDPVAAGASGFRL---NA---C-LELVQLKPTVIRGNASEI 98 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~-~vvlDp~~~~~~~~~~---~~---~-~~~~~~~~~vitPN~~E~ 98 (240)
.+...++-.+++|++.+ .+.+..+++.+++.+. ++|+||++.+..+... +. . .+++ ..+++||||..|+
T Consensus 73 ~~~d~~~~aik~G~l~~--~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll-~~adiitPN~~Ea 149 (502)
T PLN02898 73 VLSDMPVDVVKTGMLPS--AEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELL-PLATIVTPNVKEA 149 (502)
T ss_pred HHhCCCCCEEEECCcCC--HHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhh-ccCeEEcCCHHHH
Confidence 34455566677888744 3566788888888777 4999999866554211 11 1 1233 4789999999999
Q ss_pred HHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc--------cEEEcCcEEEEEecCCccCCCccchhhH
Q 026308 99 IALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV--------DIVTDGRRVVGAHNGVPMMQKITATGCS 170 (240)
Q Consensus 99 ~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD~ 170 (240)
+.|+|... ..+.+++.+.+++|.+.+...||+||.. ++++++++.+.++.+.....+++|+||+
T Consensus 150 ~~L~g~~~--------~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~ 221 (502)
T PLN02898 150 SALLGGDP--------LETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCT 221 (502)
T ss_pred HHHhCCCC--------CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhh
Confidence 99998542 0355678888889987776789999642 3566666666666544444567999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 026308 171 VTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMS 206 (240)
Q Consensus 171 lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~ 206 (240)
|+|++++++++| .++.+|+++|..+...+.+.+..
T Consensus 222 fsaaiaa~l~~G-~~l~eAv~~A~~~v~~ai~~~~~ 256 (502)
T PLN02898 222 LASCIAAELAKG-SDMLSAVKVAKRYVETALEYSKD 256 (502)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999996 89999999999999999987744
No 25
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=7.7e-19 Score=158.23 Aligned_cols=167 Identities=28% Similarity=0.271 Sum_probs=122.8
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCccc---chHH----HHHHhccCCeEEcCCHHHHH
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGF---RLNA----CLELVQLKPTVIRGNASEII 99 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~---~~~~----~~~~~~~~~~vitPN~~E~~ 99 (240)
+++..+.-.++.|++++ .+.+..+++.+++.+.++|+||++...++. ..+. ..+++ +.+++||||..|++
T Consensus 66 ~~~d~~~~~ik~G~l~~--~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~ll-p~adli~pN~~Ea~ 142 (448)
T PRK08573 66 VWEDMGIDAAKTGMLSN--REIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLL-PLATVVTPNRPEAE 142 (448)
T ss_pred HHhcCCCCEEEECCcCC--HHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhh-ccCEEEcCCHHHHH
Confidence 33444445667888754 366788899999999999999987643221 1111 12333 46899999999999
Q ss_pred HHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhc-CCEEEEecCc-------cEEEcCcEEEEEecCCccCCCccchhhHH
Q 026308 100 ALSRASVGPTKGVDSSHESMDAMEAARCLAEAS-GAIVAVSGAV-------DIVTDGRRVVGAHNGVPMMQKITATGCSV 171 (240)
Q Consensus 100 ~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~~~VvitG~~-------~~i~~~~~~~~~~~~~~~~~~~~GaGD~l 171 (240)
.|+|.+. .+.++..+++++|.+++ ...|++||.. +++++++..+.++.++....+++|+||+|
T Consensus 143 ~L~g~~i---------~~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaF 213 (448)
T PRK08573 143 KLTGMKI---------RSVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSF 213 (448)
T ss_pred HHhCCCC---------CCHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHH
Confidence 9999765 45667888899998654 4568999542 24555556666665554556779999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 026308 172 TALIAAFVAVDPLHAFEATASALSVYGIAGEMGMS 206 (240)
Q Consensus 172 ag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~ 206 (240)
+|++++++++| .++.+|+++|..+...+.+....
T Consensus 214 sAa~aa~l~~G-~~l~eAl~~A~~~~~~al~~~~~ 247 (448)
T PRK08573 214 SAAIAAGLAKG-LDPEEAIKTAKKFITMAIKYGVK 247 (448)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999996 89999999999999998886644
No 26
>PRK05756 pyridoxamine kinase; Validated
Probab=99.82 E-value=1.1e-18 Score=148.75 Aligned_cols=165 Identities=19% Similarity=0.094 Sum_probs=122.7
Q ss_pred ccCcEEEecCCC-CCChHHHHHHHHHHHHhcC--CCEEEcccccCCcc-c--chHH---HH-HHhccCCeEEcCCHHHHH
Q 026308 30 HVRALYVNVGTL-SANWLPSMKAAAQLASQLG--KPWVLDPVAAGASG-F--RLNA---CL-ELVQLKPTVIRGNASEII 99 (240)
Q Consensus 30 ~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~-~--~~~~---~~-~~~~~~~~vitPN~~E~~ 99 (240)
.+|+++ .|++ +....+.+.++++.+++.+ ..+|+||++.+..+ . ..+. .+ .++ .++++||||..|++
T Consensus 74 ~~~~v~--~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll-~~adiitpN~~Ea~ 150 (286)
T PRK05756 74 ECDAVL--SGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRAL-PAADIITPNLFELE 150 (286)
T ss_pred cCCEEE--ECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhc-ccccEecCCHHHHH
Confidence 567554 5774 5556777888888777665 56899999987442 2 1111 12 244 48999999999999
Q ss_pred HHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEec-Cc--------cE-EEcCcEEEEEecCCccC-CCccchh
Q 026308 100 ALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSG-AV--------DI-VTDGRRVVGAHNGVPMM-QKITATG 168 (240)
Q Consensus 100 ~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG-~~--------~~-i~~~~~~~~~~~~~~~~-~~~~GaG 168 (240)
.|+|.+. .+.+++.+.+++|.+.+...|++|+ .. +. ++++++.+..+.+.... .+++|||
T Consensus 151 ~L~g~~~---------~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaG 221 (286)
T PRK05756 151 WLSGRPV---------ETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVG 221 (286)
T ss_pred HHhCCCc---------CCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChH
Confidence 9999765 4567788889999877767799994 32 23 45666666666444444 3779999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 169 CSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 169 D~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
|+|+|++++.++.+ .++.+|+++|..+...+.+.+.+.
T Consensus 222 D~f~a~~~a~l~~g-~~~~~al~~A~~~~~~~i~~~~~~ 259 (286)
T PRK05756 222 DLTSALFLARLLQG-GSLEEALEHTTAAVYEVMARTKER 259 (286)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999996 899999999999999999987663
No 27
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.82 E-value=1.3e-18 Score=159.11 Aligned_cols=165 Identities=20% Similarity=0.226 Sum_probs=121.0
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCccc---chHH----HH----HHhccCCeEEcCCH
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGF---RLNA----CL----ELVQLKPTVIRGNA 95 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~---~~~~----~~----~~~~~~~~vitPN~ 95 (240)
+++..++.+|++|++.+ .+.++.+++.++ +.|+|+||++.+.++. +... .. +++ +.+++||||.
T Consensus 294 l~~d~~~~~Ik~G~l~s--~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll-~~advitPN~ 368 (504)
T PTZ00347 294 VMSDFNISVVKLGLVPT--ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIF-PMATIITPNI 368 (504)
T ss_pred HHhCCCCCEEEECCcCC--HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhcc-CcceEEeCCH
Confidence 44566778888898644 255566666664 6789999999754431 1111 11 233 4679999999
Q ss_pred HHHHHHHcCC-CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc---------cEEEcC--cEEEEEecCCccCCC
Q 026308 96 SEIIALSRAS-VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV---------DIVTDG--RRVVGAHNGVPMMQK 163 (240)
Q Consensus 96 ~E~~~L~g~~-~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~---------~~i~~~--~~~~~~~~~~~~~~~ 163 (240)
.|++.|+|.+ . .+.++..+++++|.+.+...||+||+. ++++++ ++.+.++.++....+
T Consensus 369 ~Ea~~L~g~~~~---------~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~ 439 (504)
T PTZ00347 369 PEAERILGRKEI---------TGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATIN 439 (504)
T ss_pred HHHHHHhCCCCC---------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCC
Confidence 9999999964 3 355677788888888666679999543 456553 345666655545567
Q ss_pred ccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 026308 164 ITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMS 206 (240)
Q Consensus 164 ~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~ 206 (240)
++||||+|+|++++++++| .++.+|++.|..+...+++.+..
T Consensus 440 ~~GaGD~fsaaiaa~la~G-~~l~eAv~~A~~~v~~~i~~~~~ 481 (504)
T PTZ00347 440 THGTGCTLASAISSFLARG-YTVPDAVERAIGYVHEAIVRSCG 481 (504)
T ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCc
Confidence 7999999999999999996 89999999999999999988764
No 28
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.81 E-value=3.6e-18 Score=143.10 Aligned_cols=164 Identities=22% Similarity=0.235 Sum_probs=119.2
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHH-hcCCCEEEcccccCCccc--chHH----HHHHhccCCeEEcCCHHHHHHHH
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLAS-QLGKPWVLDPVAAGASGF--RLNA----CLELVQLKPTVIRGNASEIIALS 102 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~-~~~~~vvlDp~~~~~~~~--~~~~----~~~~~~~~~~vitPN~~E~~~L~ 102 (240)
..+..++..|++++. +.++.+++.++ +.+.++|+||++...... .... .++++ +.+++||||..|++.|+
T Consensus 68 ~~~~~~i~~G~l~~~--~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll-~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 68 DVPFSAIKIGLLPNV--EIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFF-PYVTVITPNLVEAELLS 144 (253)
T ss_pred CCCCCEEEECCcCCH--HHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHh-ccCcEECCCHHHHHHHh
Confidence 456677777886432 44566666666 468899999998754321 1111 22333 46799999999999999
Q ss_pred cCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc--------cEEEcCcEEEEEecCCccCCCccchhhHHHHH
Q 026308 103 RASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV--------DIVTDGRRVVGAHNGVPMMQKITATGCSVTAL 174 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~ 174 (240)
|.+. .+.+++.+++++|.+.+...|++|+.. +++++++..+... .+....+++|+||+|+|+
T Consensus 145 g~~~---------~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GaGDaf~a~ 214 (253)
T PRK12413 145 GKEI---------KTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILE-SPVLEKNNIGAGCTFASS 214 (253)
T ss_pred CcCC---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEe-ecccCCCCCChHHHHHHH
Confidence 9765 456778888899988776679999442 2456666655443 333445679999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 175 IAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 175 iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+++.++++ .++.+|+++|..+...+.+.+.+.
T Consensus 215 ~~~~l~~g-~~l~ea~~~A~~~~~~~l~~~~~~ 246 (253)
T PRK12413 215 IASQLVKG-KSPLEAVKNSKDFVYQAIQQSDQY 246 (253)
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999996 899999999999999999877653
No 29
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.79 E-value=5.7e-18 Score=155.55 Aligned_cols=160 Identities=25% Similarity=0.219 Sum_probs=113.3
Q ss_pred cEEEecCCC-CCChHHHHHHHHHHHHhcC-CCEEEcccccCCccc---chH---HHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 33 ALYVNVGTL-SANWLPSMKAAAQLASQLG-KPWVLDPVAAGASGF---RLN---ACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 33 ~vvi~~G~~-~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~~---~~~---~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.-.++.|++ +.+.++ .+.+.+++.. .++|+||++....+. ..+ ..++++ +.+++||||..|++.|+|.
T Consensus 99 ~~aikiG~l~s~~~i~---~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll-~~advItPN~~Ea~~Ltg~ 174 (530)
T PRK14713 99 VDAVKIGMLGDAEVID---AVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELV-PRADLITPNLPELAVLLGE 174 (530)
T ss_pred CCEEEECCcCCHHHHH---HHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHh-hhhheecCChHHHHHHhCC
Confidence 334557887 444444 4444444433 469999998643332 111 123455 4899999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc-------cEEEcCc-EEEEEecCCccCCCccchhhHHHHHHH
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV-------DIVTDGR-RVVGAHNGVPMMQKITATGCSVTALIA 176 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~-------~~i~~~~-~~~~~~~~~~~~~~~~GaGD~lag~ia 176 (240)
+. ..+.+++.+++++|.++++..||+||+. ++++.++ ..+.++..+....+++|+||+|+|+++
T Consensus 175 ~~--------~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaala 246 (530)
T PRK14713 175 PP--------ATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALA 246 (530)
T ss_pred CC--------CCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHH
Confidence 54 0245678888899988777789999652 3555433 356566444444567999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Q 026308 177 AFVAVDPLHAFEATASALSVYGIAGEMGM 205 (240)
Q Consensus 177 a~la~~~~~~~~A~~~A~~~~~~a~~~a~ 205 (240)
+++++| .++.+|++.|..+...+++.+.
T Consensus 247 a~La~G-~~l~eAv~~A~~~v~~~i~~a~ 274 (530)
T PRK14713 247 TRLGRG-GDWAAALRWATAWLHGAIAAGA 274 (530)
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHHHhCC
Confidence 999996 8999999999999999998764
No 30
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.79 E-value=1e-17 Score=159.39 Aligned_cols=163 Identities=26% Similarity=0.269 Sum_probs=120.3
Q ss_pred cCcEEEecCCCCCChHHHHHHHHHHHHhc-CCCEEEcccccCCcccch------HHHHHHhccCCeEEcCCHHHHHHHHc
Q 026308 31 VRALYVNVGTLSANWLPSMKAAAQLASQL-GKPWVLDPVAAGASGFRL------NACLELVQLKPTVIRGNASEIIALSR 103 (240)
Q Consensus 31 ~d~vvi~~G~~~~~~~~~~~~~~~~~~~~-~~~vvlDp~~~~~~~~~~------~~~~~~~~~~~~vitPN~~E~~~L~g 103 (240)
...=.++.|++.+ .+.+..+++.+++. +.++|+||++...++... +..++++ +.+++||||..|++.|+|
T Consensus 309 ~~~~aiKiGmL~s--~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Ll-p~adlItPN~~Ea~~L~g 385 (755)
T PRK09517 309 VTVDAVKLGMLGS--ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLA-VHVDVVTPNIPELAVLCG 385 (755)
T ss_pred CCCCEEEECCCCC--HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHh-CcccCccCCHHHHHHHhC
Confidence 3344566788744 25567777777775 477999999876544321 1123444 479999999999999999
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC-------ccEEEc-CcEEEEEecCCccCCCccchhhHHHHHH
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA-------VDIVTD-GRRVVGAHNGVPMMQKITATGCSVTALI 175 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~-------~~~i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~i 175 (240)
... ..+.+++.+++++|.+.+++.||+||+ .+.++. ++..+.++.+.....+++|+||+|+|+|
T Consensus 386 ~~~--------~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaai 457 (755)
T PRK09517 386 EAP--------AITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAAL 457 (755)
T ss_pred CCC--------CCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHH
Confidence 531 034567888899998877778999965 245544 3345566655555567899999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Q 026308 176 AAFVAVDPLHAFEATASALSVYGIAGEMGM 205 (240)
Q Consensus 176 aa~la~~~~~~~~A~~~A~~~~~~a~~~a~ 205 (240)
++++++| .++.+|++.|..+...+++.+.
T Consensus 458 aa~La~G-~sl~eAv~~A~~~v~~~i~~a~ 486 (755)
T PRK09517 458 ATLIAAG-ESVEKALEWATRWLNEALRHAD 486 (755)
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 9999996 8999999999999999998773
No 31
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.79 E-value=4.6e-18 Score=146.31 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=127.0
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcC-CCEEEcccccCCcccch---H----HHHHHhccCCeEEcCCHHHHHHH
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLG-KPWVLDPVAAGASGFRL---N----ACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~~~~---~----~~~~~~~~~~~vitPN~~E~~~L 101 (240)
...+=|+++||+.+. +++..+.+.+.+.+ .++|+||+++..++--. + ..++++ +.++++|||..|+-.|
T Consensus 90 Di~C~VvKTGML~~~--~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~-P~adiltPNI~Ea~~L 166 (523)
T KOG2598|consen 90 DIKCDVVKTGMLPSP--EIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELL-PFADILTPNIPEAFIL 166 (523)
T ss_pred cCcccEEeecCcCch--HHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhh-hhHHHhCCChHHHHHH
Confidence 445667899997543 22333334444455 46999999987765311 1 234455 5789999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC-------------------ccEEEcCcEEEEEecCCccCC
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA-------------------VDIVTDGRRVVGAHNGVPMMQ 162 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~-------------------~~~i~~~~~~~~~~~~~~~~~ 162 (240)
++... +.+....+..|+.+.+.++.+.++..|+++|+ .|+++++++.+.++.+.....
T Consensus 167 l~~~~---~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~ 243 (523)
T KOG2598|consen 167 LKKEK---REISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATK 243 (523)
T ss_pred Hhhcc---cCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccc
Confidence 98421 11122356778888899999888888999975 135678888888876555566
Q ss_pred CccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 163 KITATGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 163 ~~~GaGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+++|+||+|+++||+.||+| .++.+|++.|..+...|+++....
T Consensus 244 ~tHGtgCtLaSAIASnLA~g-~sl~qAv~~ai~yvq~Ai~~s~~i 287 (523)
T KOG2598|consen 244 HTHGTGCTLASAIASNLARG-YSLLQAVQGAIEYVQNAIAISCDI 287 (523)
T ss_pred cccCccchHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHhcCCc
Confidence 78999999999999999996 999999999999999999987665
No 32
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.78 E-value=2.6e-17 Score=140.38 Aligned_cols=166 Identities=19% Similarity=0.156 Sum_probs=119.8
Q ss_pred cccCcEEEecCCC-CCChHHHHHHHHHHHHhcC--CCEEEcccccCCccc---chHH---HH-HHhccCCeEEcCCHHHH
Q 026308 29 PHVRALYVNVGTL-SANWLPSMKAAAQLASQLG--KPWVLDPVAAGASGF---RLNA---CL-ELVQLKPTVIRGNASEI 98 (240)
Q Consensus 29 ~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~~---~~~~---~~-~~~~~~~~vitPN~~E~ 98 (240)
.++|+++ .|++ +....+.+.++++.+++.+ +++|+||++.+.++. .... .+ .++ ..+++||||..|+
T Consensus 73 ~~~d~v~--~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll-~~adii~pN~~Ea 149 (286)
T TIGR00687 73 NQCDAVL--SGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAI-PVADIITPNQFEL 149 (286)
T ss_pred ccCCEEE--ECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhcc-ccccEecCCHHHH
Confidence 3677764 5775 5556778888888887765 679999988765322 1111 11 233 4689999999999
Q ss_pred HHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe--cCcc---------EEEcCcEEEEEecCCcc-CCCccc
Q 026308 99 IALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS--GAVD---------IVTDGRRVVGAHNGVPM-MQKITA 166 (240)
Q Consensus 99 ~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit--G~~~---------~i~~~~~~~~~~~~~~~-~~~~~G 166 (240)
+.|+|.+. .+.+++.+++++|.+.+...|++| |..+ +++++++.+..+.+... ..+++|
T Consensus 150 ~~L~g~~~---------~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~G 220 (286)
T TIGR00687 150 ELLTGRKI---------NTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVG 220 (286)
T ss_pred HHHhCCCc---------CCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCC
Confidence 99999765 456678888888888776678888 3322 33455555555533433 356799
Q ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 167 TGCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 167 aGD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+||+|+|++++.+++| .++.+|+++|..+...+.+.....
T Consensus 221 aGD~f~A~~l~~l~~g-~~~~~al~~A~~~v~~~l~~t~~~ 260 (286)
T TIGR00687 221 TGDLIAALLLATLLHG-NSLKEALEKTVSAVYHVLVTTIAL 260 (286)
T ss_pred hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999996 899999999999988888766553
No 33
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.77 E-value=8.8e-17 Score=138.40 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=123.4
Q ss_pred hcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHHHHHHHcCCC
Q 026308 28 TPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASEIIALSRASV 106 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E~~~L~g~~~ 106 (240)
+++++.+++...++.....+.+.++++.+++.++++++||.+. .....+. ..+++++||..|+..|+|.+.
T Consensus 128 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~~~~~~~~~i~~n~~E~~~l~g~~~ 199 (309)
T PRK10294 128 IESGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGD--------ALSAALAIGNIELVKPNQKELSALVNRDL 199 (309)
T ss_pred cCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCH--------HHHHHHhcCCCeEECCCHHHHHHHhCCCC
Confidence 4678888886333443345677889999999999999999751 1122222 368999999999999999764
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhcC-CEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 107 GPTKGVDSSHESMDAMEAARCLAEASG-AIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
.+.+++.++++++.+.++ ..||+| |..+. ++++++.++++.++....+++||||+|.|.+...+.+|
T Consensus 200 ---------~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g- 269 (309)
T PRK10294 200 ---------TQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAEN- 269 (309)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcC-
Confidence 345667788888887764 568888 77654 45656666666555566788999999999888888886
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCL 222 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l 222 (240)
.++.+|+++|+.++..+.. . .|......+.++.+
T Consensus 270 ~~~~~al~~a~a~aa~~v~----~-~G~~~~~~~~~~~~ 303 (309)
T PRK10294 270 ASLEEMVRFGVAAGSAATL----N-QGTRLCSHDDTQKI 303 (309)
T ss_pred CCHHHHHHHHHHHHHHHhc----C-CCCCCCCHHHHHHH
Confidence 8999999999887665443 2 45555544444444
No 34
>PLN02978 pyridoxal kinase
Probab=99.76 E-value=5.9e-17 Score=139.37 Aligned_cols=164 Identities=18% Similarity=0.120 Sum_probs=118.0
Q ss_pred cCcEEEecCCC-CCChHHHHHHHHHHHHh--cCCCEEEcccccCCcccc--hHH---HH-HHhccCCeEEcCCHHHHHHH
Q 026308 31 VRALYVNVGTL-SANWLPSMKAAAQLASQ--LGKPWVLDPVAAGASGFR--LNA---CL-ELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 31 ~d~vvi~~G~~-~~~~~~~~~~~~~~~~~--~~~~vvlDp~~~~~~~~~--~~~---~~-~~~~~~~~vitPN~~E~~~L 101 (240)
+|+++ .|++ +....+.+..+++.+++ .++++|+||++.+.+... .+. .+ .++ ..+++||||..|++.|
T Consensus 87 ~~ai~--~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll-~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLL--TGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVV-PLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEE--ecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHH-hhCCeeccCHHHHHHH
Confidence 56666 5776 66677777788877776 447899999987644321 111 22 344 4799999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC---ccE-EEc--------CcEEEEEecCCccCCCccchhh
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA---VDI-VTD--------GRRVVGAHNGVPMMQKITATGC 169 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~---~~~-i~~--------~~~~~~~~~~~~~~~~~~GaGD 169 (240)
+|.++ .+.+++.++++++.+.+...||+||. ..+ +.. .++.+.+..++.. ..++|+||
T Consensus 164 ~g~~~---------~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~GtGD 233 (308)
T PLN02978 164 TGIRI---------VTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIP-AYFTGTGD 233 (308)
T ss_pred hCCCC---------CCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCC-CCCCCchH
Confidence 99765 35567788888888877777888863 222 221 1345555544433 33599999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 170 SVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 170 ~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
+|+|+++++++.++.++.+|++.|..+...+++.+.+.
T Consensus 234 ~fsA~laa~l~~g~~~l~~A~~~A~~~v~~~i~~t~~~ 271 (308)
T PLN02978 234 LMAALLLGWSHKYPDNLDKAAELAVSSLQAVLRRTLAD 271 (308)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999742589999999999999999987663
No 35
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.76 E-value=1.9e-16 Score=135.70 Aligned_cols=157 Identities=21% Similarity=0.123 Sum_probs=117.1
Q ss_pred hhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 27 FTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 27 ~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.+++++++++. |. +.....+.+..+++.+++.+.++++||... ...+.+...+++++||..|++.|+|.+
T Consensus 124 ~l~~~~~v~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~--------~~~~~~~~~~~i~~~n~~E~~~l~g~~ 194 (304)
T TIGR03828 124 QLAEGDWLVLS-GSLPPGVPPDFYAELIALAREKGAKVILDTSGE--------ALRDGLKAKPFLIKPNDEELEELFGRE 194 (304)
T ss_pred hccCCCEEEEE-CCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH--------HHHHHHhcCCcEECcCHHHHHHHhCCC
Confidence 46789999985 44 322234667888889999999999999751 112333346789999999999999976
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
. .+.+++.+.++.+.+.+...||+| |..+ +++++++.++.+.....+.+++|+||+|+|.+...+.++
T Consensus 195 ~---------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g- 264 (304)
T TIGR03828 195 L---------KTLEEIIEAARELLDLGAENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESG- 264 (304)
T ss_pred C---------CCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcC-
Confidence 4 345677778888887766678888 7655 455666666666555556788999999999999888886
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGE 202 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.+++.+..
T Consensus 265 ~~~~~a~~~a~~~Aa~~~~ 283 (304)
T TIGR03828 265 LSLEEALRLAVAAGSAAAF 283 (304)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 8999999999987665543
No 36
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.76 E-value=2.3e-16 Score=135.25 Aligned_cols=158 Identities=22% Similarity=0.160 Sum_probs=117.2
Q ss_pred hhhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 26 DFTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
+.++++|++++. |.. +....+.+..+++.+++.++++++||.. . ...+.+..++++++||..|+..|+|.
T Consensus 123 ~~~~~~~~v~i~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~-----~---~~~~~~~~~~dil~~n~~E~~~l~g~ 193 (303)
T TIGR03168 123 ELLASGDIVVIS-GSLPPGVPPDFYAQLIAIARKRGAKVILDTSG-----E---ALREALAAKPFLIKPNHEELEELFGR 193 (303)
T ss_pred HhccCCCEEEEe-CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCc-----H---HHHHHHhcCCcEECCCHHHHHHHhCC
Confidence 347789999985 432 2223466788889999999999999975 1 11233324789999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
+. .+.+++.++++.+.+++...||+| |..+ +++++++.++.+..+....+++|+||+|+|++.+.+.++
T Consensus 194 ~~---------~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g 264 (303)
T TIGR03168 194 EL---------KTEEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARG 264 (303)
T ss_pred CC---------CCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcC
Confidence 64 345667777888877766678888 7655 456666677777555555678999999999999888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.+++....
T Consensus 265 -~~i~~a~~~A~~~aa~~~~ 283 (303)
T TIGR03168 265 -LSLEEALRFAVAAGSAAAF 283 (303)
T ss_pred -CCHHHHHHHHHHHHHHHhc
Confidence 7999999999887665443
No 37
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.75 E-value=2.2e-16 Score=135.99 Aligned_cols=174 Identities=22% Similarity=0.157 Sum_probs=123.5
Q ss_pred hhhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc--cCCeEEcCCHHHHHHHH
Q 026308 26 DFTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ--LKPTVIRGNASEIIALS 102 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~--~~~~vitPN~~E~~~L~ 102 (240)
+.++.+|++++. |.. .....+.+..+++.+++.++++++||... . ...++. .++++++||..|++.|+
T Consensus 122 ~~~~~~~~v~~~-g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~---~~~~~~~~~~~dii~~n~~E~~~l~ 192 (309)
T PRK13508 122 QLLESVEVVAIS-GSLPAGLPVDYYAQLIELANQAGKPVVLDCSGA-----A---LQAVLESPYKPTVIKPNIEELSQLL 192 (309)
T ss_pred HhccCCCEEEEe-CCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcH-----H---HHHHHhccCCceEEccCHHHHHHHh
Confidence 456789999885 553 22223567788888999999999999751 1 122221 47899999999999999
Q ss_pred cCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 103 RASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
|.+. ..+.+++.+.++++.+.+...|++| |..+. ++++++.++.+.++..+.+++||||+|.|.+...+.
T Consensus 193 g~~~--------~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~ 264 (309)
T PRK13508 193 GKEV--------SEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLL 264 (309)
T ss_pred CCCC--------CCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHH
Confidence 9653 0234566666666666666678888 77664 456666777776666667889999999888888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCL 222 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l 222 (240)
++ .++.+|+++|+..++.+.. ..+.+.+.+.-++++
T Consensus 265 ~g-~~~~~al~~a~a~aa~~~~-----~~~~~~~~~~~~~~~ 300 (309)
T PRK13508 265 HQ-EDDADLLKKANVLGMLNAQ-----EKQTGHVNMANYDEL 300 (309)
T ss_pred cC-CCHHHHHHHHHHHHHHHhc-----CcCcCCCCHHHHHHH
Confidence 86 8999999999987665443 245666655554444
No 38
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.75 E-value=2.1e-16 Score=134.68 Aligned_cols=157 Identities=23% Similarity=0.169 Sum_probs=117.2
Q ss_pred hhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 27 FTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 27 ~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.++++|++++. |. +.....+.+..+++.+++.++++++||... ...+.+...+++++||..|++.+++..
T Consensus 125 ~~~~~~~~~i~-g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~--------~~~~~~~~~~dil~~n~~E~~~l~~~~ 195 (289)
T cd01164 125 LLKKGDIVVLS-GSLPPGVPADFYAELVRLAREKGARVILDTSGE--------ALLAALAAKPFLIKPNREELEELFGRP 195 (289)
T ss_pred hcCCCCEEEEe-CCCCCCcCHHHHHHHHHHHHHcCCeEEEECChH--------HHHHHHhcCCcEECCCHHHHHHHhCCC
Confidence 35689999986 44 332233556788888888999999999751 112333247999999999999999975
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
. .+.+++.+.++.|.+++...|++| |..+ +++++++.++++..+..+.+++|+||+|+|.+...+.++
T Consensus 196 ~---------~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g- 265 (289)
T cd01164 196 L---------GDEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQG- 265 (289)
T ss_pred C---------CCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcC-
Confidence 4 345677788888888876678888 7755 455666677776555556688999999988888888886
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGE 202 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.+++....
T Consensus 266 ~~~~~a~~~A~~~Aa~~~~ 284 (289)
T cd01164 266 LSLEEALRLAVAAGSATAF 284 (289)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 8999999999987665543
No 39
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.75 E-value=3.9e-16 Score=134.40 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=122.6
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc--cCCeEEcCCHHHHHHHHc
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ--LKPTVIRGNASEIIALSR 103 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~--~~~~vitPN~~E~~~L~g 103 (240)
+.++.+|++++..-++.....+.+..+++.+++.++++++||... . ...++. .++++++||..|++.|+|
T Consensus 122 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~---~~~~~~~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 122 QLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGA-----T---LQTVLENPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred HHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChH-----H---HHHHHhccCCCeEEcCCHHHHHHHhC
Confidence 446788999986332332234667888899999999999999751 1 122222 368999999999999999
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhc
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAV 181 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~ 181 (240)
.+. ..+.+++.+.++++.+.+...|++| |..+ +++++++.++.+.+.....+++||||+|.|.+...+.+
T Consensus 194 ~~~--------~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~ 265 (309)
T TIGR01231 194 QEL--------TEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLN 265 (309)
T ss_pred CCC--------CCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHc
Confidence 653 0244566667777666666678888 8766 44566667777765556678899999998888888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHH
Q 026308 182 DPLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCL 222 (240)
Q Consensus 182 ~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l 222 (240)
| .++.+++++|+.+.+.+... .++|....+.++++
T Consensus 266 g-~~~~~a~~~a~a~aa~~~~~-----~~~~~~~~~~~~~~ 300 (309)
T TIGR01231 266 H-ESDHDLLKKANTLGMLNAQE-----AQTGHVNLNNYDDL 300 (309)
T ss_pred C-CCHHHHHHHHHHHHHHHhcC-----cccCCCCHHHHHHH
Confidence 5 89999999999876655431 34555544444333
No 40
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.74 E-value=7.9e-16 Score=132.63 Aligned_cols=158 Identities=16% Similarity=0.066 Sum_probs=117.8
Q ss_pred hhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 26 DFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
+.++++|++++. |. ++....+.+..+++.+++.+.++++||.. . ...+.+...+++++||..|+..|+|.
T Consensus 127 ~~l~~~d~v~~~-g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-----~---~~~~~~~~~~~~l~~n~~E~~~l~g~ 197 (312)
T PRK09513 127 SWLGQFDMVAVS-GSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSR-----E---ALVAGLKAAPWLVKPNRRELEIWAGR 197 (312)
T ss_pred hhcCCCCEEEEE-CCCCCCCCHHHHHHHHHHHHhcCCEEEEECCh-----H---HHHHHhccCCeEEcCCHHHHHHHhCC
Confidence 456789998885 65 33334566778888888889999999974 1 12233335789999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
+. .+.+++.+.++.+.+.+...|++| |..+ +++.+++.++.+.+.....+++|+||+|+|.+...+.++
T Consensus 198 ~~---------~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g 268 (312)
T PRK09513 198 KL---------PELKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMR 268 (312)
T ss_pred CC---------CCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcC
Confidence 54 345677777888877766678888 7765 445555566666555556688999999999888888886
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+..++.+..
T Consensus 269 -~~~~~a~~~A~a~Aa~~~~ 287 (312)
T PRK09513 269 -ESSEHTLRLATAVSALAVS 287 (312)
T ss_pred -CCHHHHHHHHHHHHHHHhh
Confidence 8999999999987776554
No 41
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=3.3e-17 Score=140.34 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=125.3
Q ss_pred hhhhhcccCcEEE---ecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHH
Q 026308 24 IPDFTPHVRALYV---NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 24 ~~~~~~~~d~vvi---~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
+.+.++..|++++ +.|.+++ ++.+|+.+++.++||.+||.+.+.. .. ..+++||||..|++.
T Consensus 137 ~~~~l~~~~~vVLSDY~KG~L~~-----~q~~I~~ar~~~~pVLvDPKg~Df~---------~Y-~GAtLiTPN~~E~~~ 201 (467)
T COG2870 137 IKNALKSFDALVLSDYAKGVLTN-----VQKMIDLAREAGIPVLVDPKGKDFE---------KY-RGATLITPNLKEFEE 201 (467)
T ss_pred HHHHhhcCCEEEEeccccccchh-----HHHHHHHHHHcCCcEEECCCCcchh---------hh-CCCeecCCCHHHHHH
Confidence 3455678899998 3566643 5788999999999999999995421 11 379999999999999
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCC-EEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHH
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGA-IVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAA 177 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~-~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa 177 (240)
..|... +.+++.+.+++|.+.++- .+++| +..++ ++..++..++|.....+.+++|+||+..+.+|+
T Consensus 202 ~vg~~~----------~e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~ 271 (467)
T COG2870 202 AVGKCK----------SEEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAA 271 (467)
T ss_pred HHcccc----------cHHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHH
Confidence 999763 447788889999999874 48888 66654 455444477776667788899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhhCCCcccc-HHHHHHH
Q 026308 178 FVAVDPLHAFEATASALSVYGIAGEMGMSMAKGPASL-RMHMIDC 221 (240)
Q Consensus 178 ~la~~~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~-~~~~~~~ 221 (240)
.++.| .++++||.+|.. |+.....+ .|+..+ ..++...
T Consensus 272 ~laaG-~s~~eAc~lAN~----AagiVVgK-lGTatvs~~EL~nA 310 (467)
T COG2870 272 ALAAG-ASLEEACELANA----AAGIVVGK-LGTATVSPEELEMA 310 (467)
T ss_pred HHHcC-CCHHHHHHHhhh----hcceEEee-ccceeecHHHHHhh
Confidence 99996 899999887765 44455554 455554 4444443
No 42
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.73 E-value=2.5e-16 Score=134.18 Aligned_cols=157 Identities=23% Similarity=0.184 Sum_probs=116.6
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.++.+|++++....+ .+.+..+++.+++.+.++++||.... . ...+++ ..+++++||..|++.|++.
T Consensus 124 ~~~~~~~~~v~~~~~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~-----~-~~~~~~-~~~dil~~n~~E~~~l~~~ 192 (292)
T cd01174 124 LELIAAADVLLLQLEIP----LETVLAALRAARRAGVTVILNPAPAR-----P-LPAELL-ALVDILVPNETEAALLTGI 192 (292)
T ss_pred HHhcccCCEEEEeCCCC----HHHHHHHHHHHHhcCCEEEEeCCCcC-----c-CcHHHH-hhCCEEeeCHHHHHHHhCC
Confidence 34577899998863322 35667888889999999999997521 1 113455 3789999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
+. .+.+++.+.++.+.+.+...|++| |..+. ++++++.++++..+....+++|+||+|.|.+...+.++
T Consensus 193 ~~---------~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g 263 (292)
T cd01174 193 EV---------TDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARG 263 (292)
T ss_pred CC---------CCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcC
Confidence 64 344566777888877776678888 77654 45666667777555556688999999988888888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+++++|..+++.+..
T Consensus 264 -~~~~~al~~a~~~Aa~~~~ 282 (292)
T cd01174 264 -LSLEEAIRFANAAAALSVT 282 (292)
T ss_pred -CCHHHHHHHHHHHHHHHhc
Confidence 8999999999987665543
No 43
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.72 E-value=6.3e-16 Score=132.44 Aligned_cols=161 Identities=23% Similarity=0.191 Sum_probs=109.2
Q ss_pred EEEecCCC-CCChHHHHHHHHHHHHhcC--CCEEEcccccCCccc-chHH----HHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 34 LYVNVGTL-SANWLPSMKAAAQLASQLG--KPWVLDPVAAGASGF-RLNA----CLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 34 vvi~~G~~-~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~~-~~~~----~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.++..|++ +.+..+.+.+.++.+++.+ +++|+||++.+.+.+ ..+. .++++ ..++++|||..|++.|+|.+
T Consensus 79 ~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll-~~~dii~pN~~E~~~L~g~~ 157 (296)
T PTZ00344 79 TYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELI-PYADVITPNQFEASLLSGVE 157 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHh-hhCCEEeCCHHHHHHHhCCC
Confidence 33446885 4334444444444444444 479999999654332 1111 23344 37999999999999999976
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC----cc----EE-E--cC----cEEEEEecCCccCCCccchhhH
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA----VD----IV-T--DG----RRVVGAHNGVPMMQKITATGCS 170 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~----~~----~i-~--~~----~~~~~~~~~~~~~~~~~GaGD~ 170 (240)
. .+.+++.++++++.+.+...||+||. .+ .+ . +. ++.|....+... .+++||||+
T Consensus 158 ~---------~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~ 227 (296)
T PTZ00344 158 V---------KDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDL 227 (296)
T ss_pred C---------CCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHH
Confidence 5 45567778888888776667888832 21 22 2 21 334555544333 355999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 171 VTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 171 lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
|+|++++++..+ ++.+|+++|..+...+++.+...
T Consensus 228 f~A~~~a~l~~g--~~~~a~~~A~a~~~~~i~~~~~~ 262 (296)
T PTZ00344 228 FAALLLAFSHQH--PMDLAVGKAMGVLQDIIKATRES 262 (296)
T ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998874 89999999999999999987764
No 44
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.72 E-value=7.2e-16 Score=128.02 Aligned_cols=166 Identities=20% Similarity=0.148 Sum_probs=123.8
Q ss_pred hhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcC--CCEEEcccccCCcccchH-----H-HHHHhccCCeEEcCCHHH
Q 026308 27 FTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLG--KPWVLDPVAAGASGFRLN-----A-CLELVQLKPTVIRGNASE 97 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~~~~~-----~-~~~~~~~~~~vitPN~~E 97 (240)
.+..+|+|+ +|++ +.++.+.+..+++..|+.+ ..+++||+|.+.++..-. . ..+++ +.+++||||..|
T Consensus 70 ~~~~~davl--tGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~li-p~AdiiTPN~fE 146 (281)
T COG2240 70 KLGECDAVL--TGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELL-PLADIITPNIFE 146 (281)
T ss_pred cccccCEEE--EccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhc-chhhEeCCCHHH
Confidence 445789998 6785 6667777788888777774 459999999988764211 1 12344 489999999999
Q ss_pred HHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc-------cEEEcC---cEEEEEecCCccCCCccch
Q 026308 98 IIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV-------DIVTDG---RRVVGAHNGVPMMQKITAT 167 (240)
Q Consensus 98 ~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~-------~~i~~~---~~~~~~~~~~~~~~~~~Ga 167 (240)
++.|+|.++ ++.+++.++++.|.+.+...||+|+.. .+++.. +..+++. + .....+.|+
T Consensus 147 Le~Ltg~~~---------~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~-~v~~~~~Gt 215 (281)
T COG2240 147 LEILTGKPL---------NTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-P-LVPFIPNGT 215 (281)
T ss_pred HHHHhCCCC---------CCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-h-cCCCCCCCc
Confidence 999999987 678999999999999888889999541 133322 2334332 1 122347999
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 026308 168 GCSVTALIAAFVAVDPLHAFEATASALSVYGIAGEMGMSM 207 (240)
Q Consensus 168 GD~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~~a~~~ 207 (240)
||.|+|++.+.+..+ .+..+|+..+..+.........+.
T Consensus 216 GDL~sallla~lL~g-~~~~~al~~~~~~V~evl~~T~~~ 254 (281)
T COG2240 216 GDLFSALLLARLLEG-LSLTQALERATAAVYEVLQETQKL 254 (281)
T ss_pred hHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999988886 799999999998888777766554
No 45
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.71 E-value=5.7e-16 Score=133.51 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=113.5
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.++.+|++++..........+.+..+++.+++.++++++||.+. . ...+ .++++++||..|++.|++.
T Consensus 138 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~----~~~~-~~~d~l~~n~~E~~~l~~~ 207 (315)
T TIGR02198 138 REQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK-----D----FSRY-RGATLITPNRKEAEAAVGA 207 (315)
T ss_pred HhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc-----c----hhhc-CCCcEECCCHHHHHHHhCC
Confidence 3456789999985221222223567788899999999999999852 1 1223 3789999999999999983
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcC-CEEEEe-cCccE-EEc-CcEEEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASG-AIVAVS-GAVDI-VTD-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~Vvit-G~~~~-i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
. .+.++..+.++++.++.+ ..|++| |..+. +++ ++..++++..+..+.+++|+||+|+|.+.+.+.
T Consensus 208 -~---------~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~ 277 (315)
T TIGR02198 208 -C---------DTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALA 277 (315)
T ss_pred -C---------CCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHH
Confidence 2 234566777777776554 568888 77654 445 345666665555567889999999999998888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
++ .++.+|+++|+.+++.+.+
T Consensus 278 ~g-~~~~~al~~A~~~aa~~~~ 298 (315)
T TIGR02198 278 AG-ASLEEACRLANAAAGVVVG 298 (315)
T ss_pred cC-CCHHHHHHHHHHHhhhhhc
Confidence 86 8999999999887665444
No 46
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.70 E-value=1.2e-15 Score=129.97 Aligned_cols=162 Identities=20% Similarity=0.036 Sum_probs=114.4
Q ss_pred hhhcccCcEEEecCC-CCCCh--HHHHHHHHHHHHhcCCCEEEcccccCCc--cc-chHHHHHHhccCCeEEcCCHHHHH
Q 026308 26 DFTPHVRALYVNVGT-LSANW--LPSMKAAAQLASQLGKPWVLDPVAAGAS--GF-RLNACLELVQLKPTVIRGNASEII 99 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~-~~~~~--~~~~~~~~~~~~~~~~~vvlDp~~~~~~--~~-~~~~~~~~~~~~~~vitPN~~E~~ 99 (240)
+.++++|++++. |. +.... .+.+..+++.+++.++++++||...... .. .....++++ ..+++++||..|++
T Consensus 120 ~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~-~~~dil~~n~~E~~ 197 (294)
T cd01166 120 AALAGADHLHLS-GITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELL-PYVDIVLPSEEEAE 197 (294)
T ss_pred HHHhCCCEEEEc-CcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHH-HhCCEEEcCHHHHH
Confidence 456789999886 44 22222 3667788888888999999999863211 00 011223444 37999999999999
Q ss_pred HHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHH
Q 026308 100 ALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAA 177 (240)
Q Consensus 100 ~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa 177 (240)
.|++.+. .++..+.++++ +++...|++| |..+ +++++++.++++..+....+++|+||+|+|++++
T Consensus 198 ~l~~~~~-----------~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~ 265 (294)
T cd01166 198 ALLGDED-----------PTDAAERALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLA 265 (294)
T ss_pred HHhCCCC-----------chhHHHHHHhh-cCCccEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHH
Confidence 9998642 23455566666 4555568888 7655 4556666777776555567889999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 178 FVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 178 ~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++++ .++.+|+++|..+++.+.+
T Consensus 266 ~l~~g-~~~~~a~~~a~~~aa~~i~ 289 (294)
T cd01166 266 GLLEG-WDLEEALRFANAAAALVVT 289 (294)
T ss_pred HHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 99986 8999999999987665544
No 47
>PRK11142 ribokinase; Provisional
Probab=99.70 E-value=5.3e-16 Score=133.14 Aligned_cols=157 Identities=22% Similarity=0.189 Sum_probs=114.8
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.++.++++++..+.+ .+.+..+++.+++.++++++||.... .. ...++ ..+++++||..|++.++|.
T Consensus 127 ~~~l~~~~~v~~~~~~~----~~~~~~~~~~a~~~g~~v~~d~~~~~--~~----~~~~~-~~~dil~~n~~Ea~~l~g~ 195 (306)
T PRK11142 127 RELIANADALLMQLETP----LETVLAAAKIAKQHGTKVILNPAPAR--EL----PDELL-ALVDIITPNETEAEKLTGI 195 (306)
T ss_pred HhhhccCCEEEEeCCCC----HHHHHHHHHHHHHcCCEEEEECCCCc--cc----CHHHH-hhCCEEcCCHHHHHHHhCC
Confidence 35577899998864322 35567788889999999999997421 01 12344 3789999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccEE-EcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDIV-TDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~i-~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
+. .+.++..+.++.+.+.+...||+| |..+.+ .++++.++.+.++..+.+++|+||+|.|.+...+.++
T Consensus 196 ~~---------~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g 266 (306)
T PRK11142 196 RV---------EDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEG 266 (306)
T ss_pred CC---------CChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCC
Confidence 54 344566677777777666678888 877654 4555666666555566788999999988888888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.+++....
T Consensus 267 -~~~~~al~~a~~~Aa~~~~ 285 (306)
T PRK11142 267 -KPLPEAIRFAHAAAAIAVT 285 (306)
T ss_pred -CCHHHHHHHHHHHHHHHcC
Confidence 7999999999987665443
No 48
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.69 E-value=1.3e-15 Score=130.02 Aligned_cols=158 Identities=20% Similarity=0.125 Sum_probs=115.1
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.+..+|++++....+ .+.+..+++.+++.++++++||... ......+++ ..+++++||..|++.|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~-----~~~~~~~~~-~~~d~l~~n~~E~~~l~~~ 188 (293)
T TIGR02152 119 EALIAESDIVLLQLEIP----LETVLEAAKIAKKHGVKVILNPAPA-----IKDLDDELL-SLVDIITPNETEAEILTGI 188 (293)
T ss_pred HhhhccCCEEEEecCCC----HHHHHHHHHHHHHcCCEEEEECCcC-----cccchHHHH-hcCCEEccCHHHHHHHhCC
Confidence 34567889998864322 3556788888899999999999752 111113455 3789999999999999987
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
.. .+.++..+.++.+.+.+...|++| |..+. +++++..++.+..+....+++|+||+|.+.+...+..+
T Consensus 189 ~~---------~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g 259 (293)
T TIGR02152 189 EV---------TDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEG 259 (293)
T ss_pred CC---------CCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCC
Confidence 54 234456677777877655568888 77654 45666666666555556678999999988888888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.++..+..
T Consensus 260 -~~~~~al~~a~~~Aa~~~~ 278 (293)
T TIGR02152 260 -KSLEDAIRFANAAAAISVT 278 (293)
T ss_pred -CCHHHHHHHHHHHHHHHHc
Confidence 7999999999987666554
No 49
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.69 E-value=1.4e-15 Score=130.37 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=114.1
Q ss_pred hhhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 26 DFTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
+.++++|++++. |+. .....+.+..+++.+++.++++++||.... . ..+ ..+++++||..|++.+++.
T Consensus 130 ~~l~~~~~v~~s-~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~-----~----~~~-~~~d~l~~n~~E~~~l~~~ 198 (304)
T cd01172 130 ERLPEADVVILS-DYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD-----Y----SKY-RGATLLTPNEKEAREALGD 198 (304)
T ss_pred HhhccCCEEEEE-cCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-----h----hhc-cCCcEeCCCHHHHHHHhCC
Confidence 456889999984 432 111235667888889999999999997621 1 233 3789999999999999997
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhc-CCEEEEe-cCcc-EEEc-CcEEEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEAS-GAIVAVS-GAVD-IVTD-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~~~Vvit-G~~~-~i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
+. .+.+++.+.++++.++. ...||+| |..+ ++++ +++.++++..+..+.+++||||+|.|.+...+.
T Consensus 199 ~~---------~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~ 269 (304)
T cd01172 199 EI---------NDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALA 269 (304)
T ss_pred CC---------CChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHH
Confidence 54 34456667777776554 4468888 7765 4555 566777776655677889999999888888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAG 201 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~ 201 (240)
++ .++.+|+++|+.+++.+.
T Consensus 270 ~g-~~~~~al~~a~a~Aa~~~ 289 (304)
T cd01172 270 AG-ADLEEAAFLANAAAGVVV 289 (304)
T ss_pred cC-CCHHHHHHHHHHHhheee
Confidence 85 899999999998766443
No 50
>PTZ00247 adenosine kinase; Provisional
Probab=99.69 E-value=1.4e-15 Score=133.00 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=111.8
Q ss_pred hhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 26 DFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
+.++++++++++ |. +. ...+.+..+++.+++.++++++|+..............++++ .+|+++||..|++.|+|.
T Consensus 155 ~~l~~~~~v~~~-g~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~-~~Dil~~N~~Ea~~l~g~ 231 (345)
T PTZ00247 155 EAIKTAQLYYLE-GFFLT-VSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP-YVDILFGNEEEAKTFAKA 231 (345)
T ss_pred HHHhhCCEEEEE-EEEec-ccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh-hCCEEEeCHHHHHHHhhc
Confidence 367889999997 43 22 123667888999999999999997531100000112345554 799999999999999984
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHh------cCCEEEEe-cCccE-EEcCcEEEEEecCCc---cCCCccchhhHHHH
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEA------SGAIVAVS-GAVDI-VTDGRRVVGAHNGVP---MMQKITATGCSVTA 173 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~------~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~---~~~~~~GaGD~lag 173 (240)
.. .+.++..+.++.+.+. +...||+| |..+. ++++++.++++..+. .+.+++||||+|.|
T Consensus 232 ~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~a 302 (345)
T PTZ00247 232 MK---------WDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVG 302 (345)
T ss_pred cC---------CCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHH
Confidence 21 1112344555555431 23468888 87664 556666666664443 35688999999988
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 174 LIAAFVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 174 ~iaa~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
.+.+.+.++ .++.+++++|+..++.+..
T Consensus 303 gfl~~l~~g-~~~~~al~~a~~aAa~~v~ 330 (345)
T PTZ00247 303 GFLAQYANG-KDIDRCVEAGHYSAQVIIQ 330 (345)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 888888886 8999999999987766554
No 51
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.68 E-value=1.9e-15 Score=130.22 Aligned_cols=162 Identities=20% Similarity=0.105 Sum_probs=114.9
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.++++|+++++.-.+... .+.+..+++.+++.++++++||..........+...+++ .++++++||..|++.|+|.+
T Consensus 141 ~~l~~~~~v~~~~~~~~~~-~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l-~~~d~l~~n~~E~~~l~~~~ 218 (312)
T cd01168 141 SLLAKAKYLYLEGYLLTVP-PEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELL-PYVDILFGNEEEAEALAEAE 218 (312)
T ss_pred HHHccCCEEEEEEEecCCC-HHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHH-hhCCEEEeCHHHHHHHhCCC
Confidence 4577899999863222111 266788889899999999999964110000011234555 47999999999999999853
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCC-ccCCCccchhhHHHHHHHHHHhcC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGV-PMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~-~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
. ++..+.++++.+++...||+| |..+. ++++++.++++..+ ..+.+++|+||+|.|.+...+.++
T Consensus 219 ~------------~~~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g 286 (312)
T cd01168 219 T------------TDDLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQG 286 (312)
T ss_pred C------------CChHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 2 123456777877776678888 77654 45666677777555 456788999999988888888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+++++|+.+++.+..
T Consensus 287 -~~~~~a~~~a~~~Aa~~v~ 305 (312)
T cd01168 287 -EPLEECIRLGSYAAAEVIQ 305 (312)
T ss_pred -CCHHHHHHHHHHHHHHHHh
Confidence 8999999999988776654
No 52
>PRK09850 pseudouridine kinase; Provisional
Probab=99.68 E-value=6e-15 Score=127.27 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=117.1
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.++.++++++..+.+ .+.+..+++. ..++++++||...+ ......++++ .+++++||..|++.|+|..
T Consensus 130 ~~~~~~~~v~~~~~~~----~~~~~~~~~~--~~g~~v~~D~~~~~----~~~~~~~~l~-~~dil~~N~~Ea~~l~g~~ 198 (313)
T PRK09850 130 EFIQRAKVIVADCNIS----EEALAWILDN--AANVPVFVDPVSAW----KCVKVRDRLN-QIHTLKPNRLEAETLSGIA 198 (313)
T ss_pred HHHhcCCEEEEeCCCC----HHHHHHHHHh--ccCCCEEEEcCCHH----HHHHHHhhhc-cceEEccCHHHHHHHhCCC
Confidence 4467889888864432 2344555543 25789999998521 1112345553 7999999999999999975
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccEE-EcC-cEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDIV-TDG-RRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~i-~~~-~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
. .+.+++.++++.|.+.+...||+| |..+.+ +++ +...+.+..+....+++||||+|.|.+.+.+.+|
T Consensus 199 ~---------~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g 269 (313)
T PRK09850 199 L---------SGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDG 269 (313)
T ss_pred C---------CCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcC
Confidence 4 334566777777766655568888 887644 443 2333455445556688999999999888888886
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhCCCccccHHHHHHHHh
Q 026308 183 PLHAFEATASALSVYGIAGEMGMSMAKGPASLRMHMIDCLH 223 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~~a~~~~~~~g~~~~~~~~~l~ 223 (240)
.++.+|+++|+.+++.+... ...+.+.+..+.++.+.
T Consensus 270 -~~~~eal~~a~a~aa~~~~~---~~~~~~~~~~~~~~~~~ 306 (313)
T PRK09850 270 -MPFAESVRFAQGCSSMALSC---EYTNNPDLSIANVISLV 306 (313)
T ss_pred -CCHHHHHHHHHHHHHHHhcC---CCCCCcccCHHHHHHHH
Confidence 89999999999887766542 12345566555555443
No 53
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.66 E-value=5.1e-15 Score=134.28 Aligned_cols=162 Identities=21% Similarity=0.149 Sum_probs=116.3
Q ss_pred hhhhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCCc---cc--chHHHHHHhccCCeEEcCCHHH
Q 026308 24 IPDFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGAS---GF--RLNACLELVQLKPTVIRGNASE 97 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~---~~--~~~~~~~~~~~~~~vitPN~~E 97 (240)
..+.++.+|+++++ |+ +.+...+.+..+++.+++.++++++||...... +. ......++++ .+|+++||..|
T Consensus 218 ~~~~l~~adiv~ls-g~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~-~~Dil~~Ne~E 295 (470)
T PLN02341 218 AKMAIRQSKALFCN-GYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLR-MSDVLLLTSEE 295 (470)
T ss_pred HHhhhhcCCEEEEe-ceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHh-hCCEEEecHHH
Confidence 34567889999986 54 333335677888999999999999999652100 00 1112345554 78999999999
Q ss_pred HHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcC--CEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHH
Q 026308 98 IIALSRASVGPTKGVDSSHESMDAMEAARCLAEASG--AIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTA 173 (240)
Q Consensus 98 ~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~--~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag 173 (240)
++.|+|.+ + ..+.++.|.+++. ..||+| |..+ +++++++.++++..+..+.+++|+||+|.|
T Consensus 296 a~~l~g~~-----------~---~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~A 361 (470)
T PLN02341 296 AEALTGIR-----------N---PILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAA 361 (470)
T ss_pred HHHHhCCC-----------C---HHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHH
Confidence 99999852 1 2345666765542 468888 8765 456667777777666667788999999998
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 174 LIAAFVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 174 ~iaa~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
.+...+..+ .++.+++++|+.+.+.+..
T Consensus 362 gfl~gll~G-~~l~eal~~A~a~aA~~v~ 389 (470)
T PLN02341 362 AIALGYIHN-LPLVNTLTLANAVGAATAM 389 (470)
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHHc
Confidence 888888886 8999999999987665443
No 54
>PTZ00292 ribokinase; Provisional
Probab=99.66 E-value=3.8e-15 Score=129.10 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=112.6
Q ss_pred hhcc-cCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 27 FTPH-VRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 27 ~~~~-~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.+.+ ++++++....+ .+.+.++++.+++.++++++||...... .......++++ .+++++||..|++.|+|..
T Consensus 143 ~i~~~~~~~~~~~~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~l~-~~dii~~n~~E~~~l~g~~ 216 (326)
T PTZ00292 143 NIQNICKYLICQNEIP----LETTLDALKEAKERGCYTVFNPAPAPKL-AEVEIIKPFLK-YVSLFCVNEVEAALITGME 216 (326)
T ss_pred HhhhhCCEEEECCCCC----HHHHHHHHHHHHHcCCEEEEECCCCccc-cccccHHHHHh-cCCEEcCCHHHHHHHhCCC
Confidence 3556 88888753322 2455677888889999999999753211 00122345554 7999999999999999875
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcE-EEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRR-VVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~-~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
. .+.+++.+.++.+.+.+...||+| |..+. ++++++ .++++.....+.+++|+||+|.|.+...+..+
T Consensus 217 ~---------~~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g 287 (326)
T PTZ00292 217 V---------TDTESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRG 287 (326)
T ss_pred C---------CChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCC
Confidence 4 344556666777776666678888 87664 445443 46666555566788999999988888888885
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+++++|+.+++.+..
T Consensus 288 -~~~~~al~~a~a~Aa~~v~ 306 (326)
T PTZ00292 288 -KDLKESCKRANRIAAISVT 306 (326)
T ss_pred -CCHHHHHHHHHHHHHHHcC
Confidence 8999999999987665443
No 55
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.66 E-value=6.5e-15 Score=118.04 Aligned_cols=151 Identities=25% Similarity=0.175 Sum_probs=104.1
Q ss_pred hhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHH
Q 026308 4 VANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLEL 83 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~ 83 (240)
+|.++-.+|.++.+.- +|+++++...+. .+.+.++++.+++.++++++||.+......+. ...++
T Consensus 42 ~a~~l~~LG~~~~~~~-----------~~~v~i~~~~~~---~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~-~~~~~ 106 (196)
T cd00287 42 VAVALARLGVSVTLVG-----------ADAVVISGLSPA---PEAVLDALEEARRRGVPVVLDPGPRAVRLDGE-ELEKL 106 (196)
T ss_pred HHHHHHHCCCcEEEEE-----------ccEEEEecccCc---HHHHHHHHHHHHHcCCeEEEeCCccccccccc-hHHHH
Confidence 4555666666653322 789998643333 35567888889999999999998753222111 12345
Q ss_pred hccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEc-CcEEEEEecCCcc
Q 026308 84 VQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTD-GRRVVGAHNGVPM 160 (240)
Q Consensus 84 ~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~-~~~~~~~~~~~~~ 160 (240)
+ .++++++||..|++.|++.+. .+.++..+.++++.+++...|++| |..+ ++++ +++.+.++..+..
T Consensus 107 ~-~~~dvl~~n~~E~~~l~~~~~---------~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~ 176 (196)
T cd00287 107 L-PGVDILTPNEEEAEALTGRRD---------LEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVK 176 (196)
T ss_pred H-hhCCEECCCHHHHHHHhCCCC---------CChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecCCceEEcCCccCC
Confidence 5 479999999999999999754 334566677888888777778888 7654 5566 6667777655455
Q ss_pred CCCccchhhHHHHHHHHHH
Q 026308 161 MQKITATGCSVTALIAAFV 179 (240)
Q Consensus 161 ~~~~~GaGD~lag~iaa~l 179 (240)
..+++|+||+|+|.+.+.+
T Consensus 177 ~vdt~GAGD~f~ag~~~~l 195 (196)
T cd00287 177 VVDTTGAGDAFLAALAAGL 195 (196)
T ss_pred cccCCCchHHHHHHHHHHh
Confidence 6788999999977666543
No 56
>PRK09954 putative kinase; Provisional
Probab=99.66 E-value=9.2e-15 Score=128.62 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=108.5
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.+..++.++++...+ .+.+..+++.+ .++++++||.... .....+++++ ++++++||..|++.|+|..
T Consensus 183 ~~~~~~~~v~~~~~~~----~~~~~~~~~~a--~~~~v~~D~~~~~----~~~~~~~~l~-~~dil~~n~~Ea~~l~g~~ 251 (362)
T PRK09954 183 DLIRHAGVVLADCNLT----AEALEWVFTLA--DEIPVFVDTVSEF----KAGKIKHWLA-HIHTLKPTQPELEILWGQA 251 (362)
T ss_pred HHHhcCCEEEEECCCC----HHHHHHHHHhC--CCCcEEEECCCHH----Hhhhhhhhhc-cccEEecCHHHHHHHcCCC
Confidence 4456788888875433 23345555543 4789999997521 0112345553 7999999999999999975
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccEEE-c-CcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDIVT-D-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~i~-~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
. ++.++..++++.+.+.+...||+| |..+.++ + +++.++++..+..+.+++||||+|.|.+.+.+.+|
T Consensus 252 ~---------~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g 322 (362)
T PRK09954 252 I---------TSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEG 322 (362)
T ss_pred C---------CCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcC
Confidence 4 334556677777877766678888 8876553 3 33355555555566788999999988888888886
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIA 200 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a 200 (240)
.++.+++++|+.+++.+
T Consensus 323 -~~~~eal~~a~a~Aal~ 339 (362)
T PRK09954 323 -YSFRDSARFAMACAAIS 339 (362)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 89999999999987765
No 57
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=99.65 E-value=3.9e-15 Score=121.40 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=112.1
Q ss_pred ccCcEEEecCCC-CCChHHHHHHHHHHHHhcC--CCEEEcccccCCcccch--HHH---HHHhccCCeEEcCCHHHHHHH
Q 026308 30 HVRALYVNVGTL-SANWLPSMKAAAQLASQLG--KPWVLDPVAAGASGFRL--NAC---LELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 30 ~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~~~~--~~~---~~~~~~~~~vitPN~~E~~~L 101 (240)
.+|+++ +|+. +....+.+..++...++.+ ..+|+||++.+.+.+.- +.. ++++.+.+++||||+.|++.|
T Consensus 81 ~Y~~vL--TGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiL 158 (308)
T KOG2599|consen 81 KYDAVL--TGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEIL 158 (308)
T ss_pred ccceee--eeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhh
Confidence 678888 6784 5555666666777676654 67899999999876532 221 344435689999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC----c-c--EEE----cCcEEEEEecCCccCCCccchhhH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA----V-D--IVT----DGRRVVGAHNGVPMMQKITATGCS 170 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~----~-~--~i~----~~~~~~~~~~~~~~~~~~~GaGD~ 170 (240)
+|.++ .+.++..++.+.|+++|...||+|.. . + +++ .+.+.+.+.-++ ....++|+||.
T Consensus 159 tg~~I---------~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipk-i~~~FtGTGDL 228 (308)
T KOG2599|consen 159 TGMEI---------RTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPK-IDGVFTGTGDL 228 (308)
T ss_pred cCCee---------ccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecc-cceEEecccHH
Confidence 99988 68899999999999999777888832 1 2 222 123344444333 33457999999
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHh
Q 026308 171 VTALIAAFVAVDP--LHAFEATASALSVYGIAGEM 203 (240)
Q Consensus 171 lag~iaa~la~~~--~~~~~A~~~A~~~~~~a~~~ 203 (240)
|+|.+.+.+.... .++..|+..+......-+..
T Consensus 229 fsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 229 FSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999887631 34556666665544444443
No 58
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.63 E-value=1.5e-14 Score=131.59 Aligned_cols=154 Identities=22% Similarity=0.234 Sum_probs=111.3
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.+++++++++. ++..+ ..+.+..+++.+++.++++++||.+.. + ..+ ..+++++||..|++.|+|.
T Consensus 138 ~~~l~~~~~v~is-~~~~~-~~~~~~~~~~~~k~~g~~vv~Dp~~~~---~------~~~-~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 138 EQALPSIGALVLS-DYAKG-ALASVQAMIQLARKAGVPVLIDPKGTD---F------ERY-RGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred HHHhccCCEEEEe-cCCcc-chhHHHHHHHHHHhcCCeEEEeCCCCC---c------ccc-CCCeEECcCHHHHHHHhCC
Confidence 3456788988884 44321 134567888889999999999997621 1 122 3689999999999999985
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcC-CEEEEe-cCcc-EEEcCcE-EEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASG-AIVAVS-GAVD-IVTDGRR-VVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~-~~Vvit-G~~~-~i~~~~~-~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
. .+.++..+.++++.+.++ ..|++| |..+ +++++++ .+.++.......+++||||+|+|++++.++
T Consensus 206 ~----------~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~ 275 (473)
T PRK11316 206 C----------KDEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALA 275 (473)
T ss_pred C----------CCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 3 244566677777776655 458888 6655 4455444 456665555566889999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAG 201 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~ 201 (240)
+| .++.+|+++|+.+++.+.
T Consensus 276 ~g-~~~~~al~~A~a~Aa~~v 295 (473)
T PRK11316 276 AG-NSLEEACALANAAAGVVV 295 (473)
T ss_pred cC-CCHHHHHHHHHHHHHhhc
Confidence 96 899999999987655443
No 59
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.62 E-value=2.1e-14 Score=122.45 Aligned_cols=160 Identities=17% Similarity=0.027 Sum_probs=111.5
Q ss_pred hhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccccCC--ccc--chHHHHHHhccCCeEEcCCHHHHHH
Q 026308 26 DFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAAGA--SGF--RLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~--~~~--~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
+.++.+|+++++.-. .++...+.+.++++.+++.++++++||..... ... .....++++ ..+++++||+.|++.
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l-~~~d~l~~n~~E~~~ 194 (295)
T cd01167 116 DLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELL-ELADIVKLSDEELEL 194 (295)
T ss_pred hHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHH-HhCCEEEecHHHHHH
Confidence 456788999886321 23333456778888899999999999974210 000 011123445 378999999999999
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHH
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAF 178 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~ 178 (240)
|+|... .+ +.++.+.+.+...|++| |..+ +++++++.++++..+....+++|+||+|.|.+.+.
T Consensus 195 l~~~~~-----------~~---~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~ 260 (295)
T cd01167 195 LFGEED-----------PE---EIAALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQ 260 (295)
T ss_pred HhCCCC-----------HH---HHHHHHhhcCCCEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHH
Confidence 998532 22 23455666666678888 7765 45666667777766656678899999999999988
Q ss_pred HhcCCC-------CHHHHHHHHHHHHHHHH
Q 026308 179 VAVDPL-------HAFEATASALSVYGIAG 201 (240)
Q Consensus 179 la~~~~-------~~~~A~~~A~~~~~~a~ 201 (240)
++++ . ++.+|+++|+.+++.+.
T Consensus 261 l~~g-~~~~~~~~~~~~a~~~a~~~aa~~~ 289 (295)
T cd01167 261 LLSR-GLLALDEDELAEALRFANAVGALTC 289 (295)
T ss_pred HHhC-CcccccHHHHHHHHHHHHHhhHHHh
Confidence 9886 7 78899999988766544
No 60
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.61 E-value=4.2e-14 Score=126.71 Aligned_cols=163 Identities=16% Similarity=0.047 Sum_probs=114.4
Q ss_pred hhhhcccCcEEEecCCC--CCChHHHHHHHHHHHHhcCCCEEEcccccCCc-ccchHHHHHHhccCCeEEcCCHHHHHHH
Q 026308 25 PDFTPHVRALYVNVGTL--SANWLPSMKAAAQLASQLGKPWVLDPVAAGAS-GFRLNACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~--~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~-~~~~~~~~~~~~~~~~vitPN~~E~~~L 101 (240)
.+.++.++++++. |+. .+...+.+.++++.+++.++++++||...... ..+......++ .++|+++||..|+..|
T Consensus 219 ~~~i~~adiv~l~-g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll-~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 219 ASAISKSRVLVVE-GYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMG-NYADILFANSDEARAL 296 (426)
T ss_pred HHHHhcCCEEEEE-eeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHH-hcCCEEEeCHHHHHHH
Confidence 4567889999996 431 22334667888899999999999998763211 01111222233 4799999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFV 179 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~l 179 (240)
+|... .++..++++.|. ++...||+| |..+. +.++++.++++..+..+.+++||||+|+|.+...+
T Consensus 297 ~g~~~-----------~~~~~~a~~~L~-~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l 364 (426)
T PLN02813 297 CGLGS-----------EESPESATRYLS-HFCPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGL 364 (426)
T ss_pred hCCCC-----------CCCHHHHHHHHH-cCCCEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHH
Confidence 98632 122344555554 455668888 87664 55666777777655566788999999998888888
Q ss_pred hcCCC-CHHHHHHHHHHHHHHHHH
Q 026308 180 AVDPL-HAFEATASALSVYGIAGE 202 (240)
Q Consensus 180 a~~~~-~~~~A~~~A~~~~~~a~~ 202 (240)
.+| . ++.+++++|+..++.+..
T Consensus 365 ~~G-~~~l~~al~~A~a~Aa~~v~ 387 (426)
T PLN02813 365 LRG-VSDLRGMGELAARVAATVVG 387 (426)
T ss_pred HcC-CCCHHHHHHHHHHHHHHHHc
Confidence 885 8 899999999987665544
No 61
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.61 E-value=6.3e-14 Score=119.13 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=109.1
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHc
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSR 103 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g 103 (240)
+.+.+..++++++. |..+ .+.+..+++.+++.+.++++||..... .. ...+++ ..+++|+||..|+..++|
T Consensus 122 ~~~~l~~~~~v~~~-~~~~---~~~~~~~~~~a~~~~~~v~~d~~~~~~--~~--~~~~~~-~~~dii~~n~~E~~~~~~ 192 (288)
T cd01941 122 IREALKEAKPIVVD-ANLP---EEALEYLLALAAKHGVPVAFEPTSAPK--LK--KLFYLL-HAIDLLTPNRAELEALAG 192 (288)
T ss_pred HHHHHhcCCEEEEe-CCCC---HHHHHHHHHhhhhcCCcEEEEccchHH--hc--cchhhc-ccceEEeCCHHHHHHHhC
Confidence 34557789999875 3332 235577788888889999999864210 00 001244 479999999999999998
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcC---cEEEEEec-CCccCCCccchhhHHHHHHHH
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDG---RRVVGAHN-GVPMMQKITATGCSVTALIAA 177 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~---~~~~~~~~-~~~~~~~~~GaGD~lag~iaa 177 (240)
... .+.++....++.+.+.+...|++| |..+ +++++ +..++++. ....+.+++|+||+|.|++..
T Consensus 193 ~~~---------~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~ 263 (288)
T cd01941 193 ALI---------ENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVA 263 (288)
T ss_pred ccc---------CCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHH
Confidence 653 122233344555555555568888 7765 44554 44566665 245566889999999999888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Q 026308 178 FVAVDPLHAFEATASALSVYGIAG 201 (240)
Q Consensus 178 ~la~~~~~~~~A~~~A~~~~~~a~ 201 (240)
.++++ .++.+|+++|+..++.+.
T Consensus 264 ~l~~g-~~~~~al~~a~~~Aa~~~ 286 (288)
T cd01941 264 GLLEG-MSLDDSLRFAQAAAALTL 286 (288)
T ss_pred HHHcC-CCHHHHHHHHHHHHHHHh
Confidence 88886 799999999998766543
No 62
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.60 E-value=5.5e-14 Score=119.98 Aligned_cols=163 Identities=18% Similarity=0.087 Sum_probs=120.1
Q ss_pred hhhhcccCcEEEec-CCCCCChHHHHHHHHHHHHhcC--CCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHH
Q 026308 25 PDFTPHVRALYVNV-GTLSANWLPSMKAAAQLASQLG--KPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 25 ~~~~~~~d~vvi~~-G~~~~~~~~~~~~~~~~~~~~~--~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L 101 (240)
.+.+...+++++.. -+......+.+..+.+.+++.+ .+++.|+.... ..+...+++ ..+++++||..|+..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l-~~~dil~~n~~E~~~l 196 (301)
T PF00294_consen 122 EEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWDD----LREDLKELL-PYADILKPNEEEAEAL 196 (301)
T ss_dssp HHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSHH----HHHHHHHHH-HTSSEEEEEHHHHHHH
T ss_pred ccccccccceeecccccccccccceeeecccccccccccccccccccccc----cchhhhhhc-cccchhcccccccccc
Confidence 34667899999974 1234444566677777777777 46666766521 123345666 5899999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEec-CCccCCCccchhhHHHHHHHHH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHN-GVPMMQKITATGCSVTALIAAF 178 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~-~~~~~~~~~GaGD~lag~iaa~ 178 (240)
++... .+.+++.+.++++.+++...+++| |..+. ++++++.+++++ +...+.+++|+||+|.|++...
T Consensus 197 ~~~~~---------~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~ 267 (301)
T PF00294_consen 197 TGSKI---------DDPEDALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYG 267 (301)
T ss_dssp HTCST---------SSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHH
T ss_pred ccccc---------cchhhhhccccccchhhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHH
Confidence 99864 467888888888888888888888 87664 455667777665 4566778899999998888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 179 VAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 179 la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
+..+ .++.+|+++|...++.+.+
T Consensus 268 l~~~-~~~~~a~~~a~~~aa~~v~ 290 (301)
T PF00294_consen 268 LLSG-MSLEEALKFANAAAALKVQ 290 (301)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHHT
T ss_pred HHcC-CCHHHHHHHHHHHHHHHhC
Confidence 8885 7999999999987665544
No 63
>PLN02548 adenosine kinase
Probab=99.59 E-value=8.3e-14 Score=121.08 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=107.1
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.+..+|+++++ |+......+.+..+++.+++.+.++++|+....+........+++++ .+++++||..|++.|+|..
T Consensus 144 ~~~~~~~~v~~~-g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~dil~~n~~E~~~l~g~~ 221 (332)
T PLN02548 144 ALVEKAKFYYIA-GFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALP-YVDFLFGNETEARTFAKVQ 221 (332)
T ss_pred hHHhhCCEEEEE-EEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHh-hCCEEEecHHHHHHHhCcc
Confidence 346788999885 54211223556778888888998888888531110000112345553 6899999999999999864
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHh------cCCEEEEe-cCccE-EEcCcEEEEEecC---CccCCCccchhhHHHHH
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEA------SGAIVAVS-GAVDI-VTDGRRVVGAHNG---VPMMQKITATGCSVTAL 174 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~------~~~~Vvit-G~~~~-i~~~~~~~~~~~~---~~~~~~~~GaGD~lag~ 174 (240)
. .+.++..+.++++.+. +...||+| |..+. ++++++.++++.. ...+.+++||||+|.|.
T Consensus 222 ~---------~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag 292 (332)
T PLN02548 222 G---------WETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGG 292 (332)
T ss_pred C---------CCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHH
Confidence 2 1112233333334332 23458888 87664 4566666665531 22456889999999888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 175 IAAFVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 175 iaa~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
+...+.++ .++.+++++|+.+++.+.+
T Consensus 293 ~l~~l~~g-~~l~eal~~a~aaAa~~v~ 319 (332)
T PLN02548 293 FLSQLVQG-KDIEECVRAGNYAANVIIQ 319 (332)
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 88888886 8999999999987776554
No 64
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.59 E-value=1.1e-13 Score=121.98 Aligned_cols=160 Identities=20% Similarity=0.124 Sum_probs=110.4
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCc-ccchHHHHHHhc-cCCeEEcCCHHHHHHHHc
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGAS-GFRLNACLELVQ-LKPTVIRGNASEIIALSR 103 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~-~~~~~~~~~~~~-~~~~vitPN~~E~~~L~g 103 (240)
+.++.++++++.....+ .+.+.++++.+++.++++++|+...... .++ ..+.+++. ..+++|+||+.|+..|++
T Consensus 173 ~~~~~~~~v~v~~~~~~---~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r-~~l~~ll~~~~vDilf~Ne~Ea~~l~~ 248 (367)
T PLN02379 173 EDFKGSKWLVLRYGFYN---LEVIEAAIRLAKQEGLSVSLDLASFEMVRNFR-SPLLQLLESGKIDLCFANEDEARELLR 248 (367)
T ss_pred HHHhcCCEEEEEcccCC---HHHHHHHHHHHHHcCCEEEEeccchhhhhhhh-HHHHHHhhcCCccEEEcCHHHHHHHhc
Confidence 45678999999822222 3567888899999999999999752211 112 22334543 378999999999999997
Q ss_pred CCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCc-cCCCccchhhHHHHHHHHHHh
Q 026308 104 ASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVP-MMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~-~~~~~~GaGD~lag~iaa~la 180 (240)
... ..+.+ .+.+ +.+++...+++| |..+ +++++++.++++..++ .+.+++|+||+|+|.+...+.
T Consensus 249 ~~~--------~~~~~---~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~ 316 (367)
T PLN02379 249 GEQ--------ESDPE---AALE-FLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLI 316 (367)
T ss_pred CCC--------CCCHH---HHHH-HHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHH
Confidence 532 01222 2333 334455667888 8765 4566667777775542 467889999999888887788
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
+| .++.+++++|+..++..++
T Consensus 317 ~G-~~l~~a~~~g~~aAa~vi~ 337 (367)
T PLN02379 317 KG-LSLEECCKVGACSGGSVVR 337 (367)
T ss_pred CC-CCHHHHHHHHHHHHHHHHh
Confidence 85 8999999999987665444
No 65
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.56 E-value=1.9e-13 Score=115.76 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=102.9
Q ss_pred hhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcC
Q 026308 25 PDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 25 ~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~ 104 (240)
.+.++++++++++ |+. + +....+++.+++. .++++||...+. .......+++++ .+++++||..|++.|+|.
T Consensus 109 ~~~~~~~~~v~~~-~~~-~---~~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~-~~d~~~~n~~E~~~l~g~ 180 (277)
T cd01946 109 PEHYKDSEFVFLG-NIA-P---ELQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLA-KVDVVIINDGEARQLTGA 180 (277)
T ss_pred hHHhhcCCEEEEC-CCC-H---HHHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhc-cCCEEeCCHHHHHHHhCC
Confidence 3557788999985 543 2 4456677777766 789999854221 111122345564 799999999999999874
Q ss_pred CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCcc-CCCccchhhHHHHHHHHHHhc
Q 026308 105 SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPM-MQKITATGCSVTALIAAFVAV 181 (240)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~-~~~~~GaGD~lag~iaa~la~ 181 (240)
+ +..+.++.|.+++...|++| |..+ +++++++.++++..+.. ..+++|+||+|+|.+.+.+.+
T Consensus 181 ~--------------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~ 246 (277)
T cd01946 181 A--------------NLVKAARLILAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLAS 246 (277)
T ss_pred c--------------hHHHHHHHHHHcCCCEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHh
Confidence 2 34456677777776778888 7654 45566666766654433 567899999998888888876
Q ss_pred CC----CCHHHHHHHHHHHHHHH
Q 026308 182 DP----LHAFEATASALSVYGIA 200 (240)
Q Consensus 182 ~~----~~~~~A~~~A~~~~~~a 200 (240)
+. .++.+++++|+..++.+
T Consensus 247 ~~~~~~~~~~~a~~~a~~~aa~~ 269 (277)
T cd01946 247 QKDTSEANMRRAIIYGSAMASFC 269 (277)
T ss_pred CCCcchhhHHHHHHHhHHHHhhh
Confidence 42 23556666666554433
No 66
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.55 E-value=2.3e-13 Score=115.49 Aligned_cols=149 Identities=19% Similarity=0.070 Sum_probs=107.4
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCC
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASV 106 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~ 106 (240)
.++.+|++++++..+ +...++++.+++.+.++++|.++.. .+. .+++++ ..++++||..|++.+++...
T Consensus 123 ~~~~~~~v~i~~~~~-----~~~~~~~~~~~~~g~~v~~~~~~~~---~~~--~~~~~~-~~dil~~n~~e~~~l~~~~~ 191 (284)
T cd01945 123 ILGGADAVLVDGRQP-----EAALHLAQEARARGIPIPLDLDGGG---LRV--LEELLP-LADHAICSENFLRPNTGSAD 191 (284)
T ss_pred HhCcCCEEEEcCCCH-----HHHHHHHHHHHHcCCCeeEeccCCc---ccc--hHHHhc-cCCEEEeChhHHhhhcCCCH
Confidence 468899999964322 4456788889999998888776532 211 345553 78999999999999987421
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEc-CcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 107 GPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTD-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
. +.++.+.+.+...|++| |..+. +++ +++.++++..+..+.+++|+||+|.|.+...+.++
T Consensus 192 ------------~---~~~~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g- 255 (284)
T cd01945 192 ------------D---EALELLASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEG- 255 (284)
T ss_pred ------------H---HHHHHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcC-
Confidence 1 44555555555668888 77654 455 55567776555566788999999999888888886
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGE 202 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+|+++|+.+++.+.+
T Consensus 256 ~~~~~al~~a~~~Aa~~~~ 274 (284)
T cd01945 256 MPLREALRFASAAAALKCR 274 (284)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999987766554
No 67
>PLN02323 probable fructokinase
Probab=99.54 E-value=5.6e-13 Score=115.77 Aligned_cols=161 Identities=14% Similarity=0.042 Sum_probs=104.9
Q ss_pred hhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccccCC---cc-cchHHHHHHhccCCeEEcCCHHHHHHH
Q 026308 27 FTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVAAGA---SG-FRLNACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~---~~-~~~~~~~~~~~~~~~vitPN~~E~~~L 101 (240)
.++.++++.++.-.+ .+.....+..+++.+++.+.++++||..... .. .......+++ ..+++++||..|+..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~l 211 (330)
T PLN02323 133 LIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIW-DEADIIKVSDEEVEFL 211 (330)
T ss_pred HHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHH-HhCCEEEcCHHHHHHH
Confidence 567788776642222 2222344567888889999999999963210 00 0011123444 3799999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCcEEEEEecCCccCCCccchhhHHHHHHHHHH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFV 179 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~l 179 (240)
+|... .+.+++ . ++...+...||+| |..+. ++++++.++++..+....+++|+||+|.|.+.+.+
T Consensus 212 ~g~~~---------~~~~~~---~-~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l 278 (330)
T PLN02323 212 TGGDD---------PDDDTV---V-KLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQL 278 (330)
T ss_pred hCCCC---------ccHHHH---H-HHHhcCCCEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHH
Confidence 98643 222222 2 3444455568888 88664 45655566666555566788999999988777777
Q ss_pred hcCCCC-------HHHHHHHHHHHHHHHHH
Q 026308 180 AVDPLH-------AFEATASALSVYGIAGE 202 (240)
Q Consensus 180 a~~~~~-------~~~A~~~A~~~~~~a~~ 202 (240)
..| .+ +.+++++|+++++.+..
T Consensus 279 ~~g-~~~~~~~~~l~~al~~a~a~Aa~~v~ 307 (330)
T PLN02323 279 AKD-LSLLEDEERLREALRFANACGAITTT 307 (330)
T ss_pred HcC-CccccchHHHHHHHHHHHHHHHHHHh
Confidence 775 54 78899999887766554
No 68
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.52 E-value=1.2e-12 Score=111.58 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=104.0
Q ss_pred hcccCcEEEecCCCC-CC-hHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 28 TPHVRALYVNVGTLS-AN-WLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~-~~-~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+..+|++.++...+. .. ..+.+.++++.+ +.+.++++||...... .......++++ .+++++||..|++.|+|..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~D~~~~~~~-~~~~~~~~~l~-~~d~~~~n~~E~~~l~g~~ 199 (289)
T cd01944 123 VAPYDYVYLSGYTLASENASKVILLEWLEAL-PAGTTLVFDPGPRISD-IPDTILQALMA-KRPIWSCNREEAAIFAERG 199 (289)
T ss_pred CCCCCEEEEeCccccCcchhHHHHHHHHHhc-cCCCEEEEcCcccccc-cCHHHHHHHHh-cCCEEccCHHHHHHHhCCC
Confidence 457889988633232 22 234455555543 3568999999752110 11223445554 7899999999999999964
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEc-CcEEEEEecCCccCCCccchhhHHHHHHHHHHhcC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTD-GRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVD 182 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~-~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~ 182 (240)
. .+ ....++++.+++...|++| |..+. +.+ ++..++.+..+..+.+++|+||+|+|.+...+.++
T Consensus 200 ~---------~~---~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g 267 (289)
T cd01944 200 D---------PA---AEASALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKG 267 (289)
T ss_pred C---------cc---hHHHHHHHHhccCCeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcC
Confidence 2 11 1233556666666678888 77654 445 34456666555566688999999988888778875
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 026308 183 PLHAFEATASALSVYGIAG 201 (240)
Q Consensus 183 ~~~~~~A~~~A~~~~~~a~ 201 (240)
.++.+|+++|+..++.+.
T Consensus 268 -~~~~~a~~~a~a~aa~~~ 285 (289)
T cd01944 268 -MSLADAVLLANAAAAIVV 285 (289)
T ss_pred -CCHHHHHHHHHHHHHhhh
Confidence 899999999998766544
No 69
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.50 E-value=1.4e-12 Score=111.82 Aligned_cols=158 Identities=18% Similarity=0.045 Sum_probs=107.0
Q ss_pred hcccCcEEEecCC-C-CCChHHHHHHHHHHHHhcCCCEEEcccccCCc--cc-c-hHHHHHHhccCCeEEcCCHHHHHHH
Q 026308 28 TPHVRALYVNVGT-L-SANWLPSMKAAAQLASQLGKPWVLDPVAAGAS--GF-R-LNACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 28 ~~~~d~vvi~~G~-~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~--~~-~-~~~~~~~~~~~~~vitPN~~E~~~L 101 (240)
+..++++.++ ++ . .+.......++++.+++.+.++++||...... .. . ....++++ ..+++++||..|+..|
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dil~~n~~e~~~l 194 (304)
T PRK09434 117 FRQGEWLHLC-SIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQAL-ALADVVKLSEEELCFL 194 (304)
T ss_pred hcCCCEEEEc-cccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHH-HhcceeeCCHHHHHHH
Confidence 4567888775 33 2 22223445677888899999999999742110 00 0 01123344 3789999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHHHHHHHHHhc-CCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHH
Q 026308 102 SRASVGPTKGVDSSHESMDAMEAARCLAEAS-GAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAF 178 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~ 178 (240)
+|.. + ..++++++.+++ ...|++| |..+ +++++++.++++..+....+++|+||+|.|.+...
T Consensus 195 ~g~~-----------~---~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~ 260 (304)
T PRK09434 195 SGTS-----------Q---LEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAG 260 (304)
T ss_pred hCCC-----------C---HHHHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHH
Confidence 8852 1 234566776644 3468888 8765 45666667777765556678899999999988888
Q ss_pred HhcCCC------CHHHHHHHHHHHHHHHHH
Q 026308 179 VAVDPL------HAFEATASALSVYGIAGE 202 (240)
Q Consensus 179 la~~~~------~~~~A~~~A~~~~~~a~~ 202 (240)
+++| . ++.+++++|+.+++.+.+
T Consensus 261 l~~g-~~~~~~~~~~~a~~~a~~~Aa~~v~ 289 (304)
T PRK09434 261 LSQA-GLWTDEAELAEIIAQAQACGALATT 289 (304)
T ss_pred HHcC-CCccchHHHHHHHHHHHHHHHHHHc
Confidence 8885 4 677899988887665544
No 70
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.45 E-value=6e-12 Score=105.73 Aligned_cols=148 Identities=11% Similarity=-0.035 Sum_probs=104.7
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.++.+|+++++ +... .+.+.++++.+++.++++++||...+ ......+++ ...+++.+|..|..
T Consensus 108 ~~~~~~~~v~~~-~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~-~~~d~~~~~~~~~~------ 172 (264)
T cd01940 108 EYLSQFDLVHTG-IYSH---EGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVC-PYVDFAFFSASDLS------ 172 (264)
T ss_pred hHHhcCCEEEEc-cccc---HHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhc-ccCCEEEechhhcC------
Confidence 446788999986 4432 24567888889999999999998632 111233444 47899999976531
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
.++..+.++++.+++...||+| |..+ ++.++++.++++..+....+++|+||+|.|.+...+.++
T Consensus 173 ------------~~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g- 239 (264)
T cd01940 173 ------------DEEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAG- 239 (264)
T ss_pred ------------cchHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhC-
Confidence 1234456667766666678888 8866 445666677777555566788999999988888778875
Q ss_pred CC-HHHHHHHHHHHHHHHH
Q 026308 184 LH-AFEATASALSVYGIAG 201 (240)
Q Consensus 184 ~~-~~~A~~~A~~~~~~a~ 201 (240)
.+ +.+++++|+.+++.+.
T Consensus 240 ~~~~~~al~~a~~~aa~~~ 258 (264)
T cd01940 240 GTAIAEAMRQGAQFAAKTC 258 (264)
T ss_pred CchHHHHHHHHHHHHHHHh
Confidence 78 9999999998766544
No 71
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.44 E-value=5.8e-12 Score=109.49 Aligned_cols=165 Identities=14% Similarity=0.032 Sum_probs=103.4
Q ss_pred hcccCcEEEecCCCCCChHHHHHHHHHHHHh------cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHH
Q 026308 28 TPHVRALYVNVGTLSANWLPSMKAAAQLASQ------LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIAL 101 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~------~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L 101 (240)
+..++.+.+. |.... ..+.+..+++.+++ .+.++++||..........+...+++ .++|+++||..|++.|
T Consensus 118 ~~~a~~~hl~-~~~~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l-~~~dil~~n~~Ea~~l 194 (328)
T cd01943 118 LIRSSCIHLI-CSPER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQAL-PRVDVFSPNLEEAARL 194 (328)
T ss_pred ccCCCeEEEE-CCHHH-HHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHh-ccCCEECCCHHHHHHH
Confidence 5577888875 33211 12556778888887 77889999975211000112234555 4799999999999999
Q ss_pred HcCCCCCCcCCCCCCChHHHHH-----HHHHHHHhcCCEEEEe-cCcc-EEEc--CcEEEEEecCCc---cCCCccchhh
Q 026308 102 SRASVGPTKGVDSSHESMDAME-----AARCLAEASGAIVAVS-GAVD-IVTD--GRRVVGAHNGVP---MMQKITATGC 169 (240)
Q Consensus 102 ~g~~~~~~~~~~~~~~~~~~~~-----~a~~l~~~~~~~Vvit-G~~~-~i~~--~~~~~~~~~~~~---~~~~~~GaGD 169 (240)
+|.... + .....+... ...++...+...||+| |..+ ++++ ++..++++..+. ...+++|+||
T Consensus 195 ~g~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGD 268 (328)
T cd01943 195 LGLPTS-----E-PSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGN 268 (328)
T ss_pred hCCCCC-----C-ccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchH
Confidence 996430 0 000111111 1111233344568888 8765 4445 344556654443 5678899999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 170 SVTALIAAFVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 170 ~lag~iaa~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
+|.|.+...+..+ .++.+++++|+..++.+.+
T Consensus 269 aF~agfl~~l~~g-~~~~~al~~a~a~Aa~~v~ 300 (328)
T cd01943 269 SFLGGFAAGLALT-KSIDEACIYGSVAASFAIE 300 (328)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHc
Confidence 9988888778885 7999999999887665544
No 72
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.44 E-value=5.1e-12 Score=106.91 Aligned_cols=147 Identities=14% Similarity=0.015 Sum_probs=99.5
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHH---HHH
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEII---ALS 102 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~---~L~ 102 (240)
+.++.++++.+. +.. .+..+++.+++.++++++||..... ........+++ ..+++++||..|++ .++
T Consensus 122 ~~~~~~~~~~~~-~~~------~~~~~~~~~~~~g~~v~~D~~~~~~-~~~~~~~~~~l-~~~dil~~n~~E~~~l~~~~ 192 (279)
T cd01942 122 DPDGLADIVHLS-SGP------GLIELARELAAGGITVSFDPGQELP-RLSGEELEEIL-ERADILFVNDYEAELLKERT 192 (279)
T ss_pred hhhcccCEEEeC-Cch------HHHHHHHHHHHcCCeEEEcchhhhh-hccHHHHHHHH-hhCCEEecCHHHHHHHHhhc
Confidence 456788888875 322 2456667777889999999975211 01112234555 37999999999995 444
Q ss_pred cCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecC-CccCCCccchhhHHHHHHHHHH
Q 026308 103 RASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNG-VPMMQKITATGCSVTALIAAFV 179 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~-~~~~~~~~GaGD~lag~iaa~l 179 (240)
+.. +.. . ..+...|++| |..+ +++++++.++++.. +..+.+++|+||+|+|.+.+.+
T Consensus 193 ~~~-----------~~~---~------~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l 252 (279)
T cd01942 193 GLS-----------EAE---L------ASGVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGL 252 (279)
T ss_pred CCC-----------hHH---H------hcCCCEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHH
Confidence 431 111 0 1344568888 8766 45566667777653 4556788999999999888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Q 026308 180 AVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 180 a~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
.++ .++.+|+++|+..++.+.+
T Consensus 253 ~~g-~~l~~al~~a~~~Aa~~~~ 274 (279)
T cd01942 253 LRG-YDLEESLRLGNLAASLKVE 274 (279)
T ss_pred HcC-CCHHHHHHHHHHHHHHHHc
Confidence 886 7999999999987665543
No 73
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.43 E-value=1e-11 Score=111.19 Aligned_cols=160 Identities=13% Similarity=0.023 Sum_probs=102.9
Q ss_pred hhhcccCcEEEecCC-CC----CChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHH
Q 026308 26 DFTPHVRALYVNVGT-LS----ANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~-~~----~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
+.++.++++++. |+ +. +...+.+.++++.+++.|+++++||..........+...+.+....|+|.||..|+..
T Consensus 182 ~~i~~a~ilyl~-Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~ 260 (434)
T PRK15074 182 DVIAGASALVLT-AYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEA 260 (434)
T ss_pred hHhccCCEEEEe-eeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHH
Confidence 457889999986 54 32 1224667788899999999999999863211111112222232478999999999999
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccEE-Ec-Cc------EEE-------------------
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDIV-TD-GR------RVV------------------- 152 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~i-~~-~~------~~~------------------- 152 (240)
|+|.. +.+ ++++.+.+ +...|++| |..+.+ .. .+ ..+
T Consensus 261 LtG~~-----------d~e---ea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15074 261 LTGES-----------DPL---LASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAM 325 (434)
T ss_pred HhCCC-----------CHH---HHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccch
Confidence 99842 233 34555553 45568888 887644 32 11 111
Q ss_pred -------------EEecC---CccCCCccchhhHHHHHHHHHHhcCCC--------------------CHHHHHHHHHHH
Q 026308 153 -------------GAHNG---VPMMQKITATGCSVTALIAAFVAVDPL--------------------HAFEATASALSV 196 (240)
Q Consensus 153 -------------~~~~~---~~~~~~~~GaGD~lag~iaa~la~~~~--------------------~~~~A~~~A~~~ 196 (240)
++++. +..+.+++||||.|+|.+-..+.++ . ++.+++++|+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 404 (434)
T PRK15074 326 RKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITAN-SYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRV 404 (434)
T ss_pred hccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCC-CcccccccccccccccccccCCHHHHHHHHHHH
Confidence 33332 3345688999999977666666664 4 688999999887
Q ss_pred HHHHHH
Q 026308 197 YGIAGE 202 (240)
Q Consensus 197 ~~~a~~ 202 (240)
++..+.
T Consensus 405 a~~vi~ 410 (434)
T PRK15074 405 SYEVLN 410 (434)
T ss_pred HHHHHh
Confidence 665544
No 74
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.2e-11 Score=106.55 Aligned_cols=159 Identities=21% Similarity=0.037 Sum_probs=105.6
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.+...+.+.+..-.+.... +.+..+++.+++.+.++.+|+........ .....+++ ...++++||..|++.|+|.
T Consensus 125 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l-~~~d~~~~n~~E~~~l~g~- 200 (311)
T COG0524 125 DELAGADVLHISGIQLEIPP-EALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELL-ALADILFPNEEEAELLTGL- 200 (311)
T ss_pred HHHhhcCeeeEEEeecCCCh-HHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHH-hhCCEEeCCHHHHHHHhCC-
Confidence 45567788877533333222 67788899999999999999887421100 12234455 4799999999999999985
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcE---EEEEecCCccCCCccchhhHHHHHHHHHHh
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRR---VVGAHNGVPMMQKITATGCSVTALIAAFVA 180 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~---~~~~~~~~~~~~~~~GaGD~lag~iaa~la 180 (240)
. .+.. +....+...+...|++| |..+ +++++++ +...+..+..+.+++|+||+|.|.+...+.
T Consensus 201 ~---------~~~~---~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~ 268 (311)
T COG0524 201 E---------EDAE---AAAALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLL 268 (311)
T ss_pred C---------ccHH---HHHHHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHH
Confidence 1 1112 22244555555668888 8755 4555533 222223344567889999999988888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 026308 181 VDPLHAFEATASALSVYGIAG 201 (240)
Q Consensus 181 ~~~~~~~~A~~~A~~~~~~a~ 201 (240)
++ .++.+++++|+.....+.
T Consensus 269 ~g-~~~~~a~~~a~a~aa~~~ 288 (311)
T COG0524 269 EG-KSLEEALRFANAAAALAV 288 (311)
T ss_pred cC-CCHHHHHHHHHHHhhhhh
Confidence 86 799999999996555443
No 75
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.38 E-value=1.3e-11 Score=103.11 Aligned_cols=147 Identities=13% Similarity=-0.056 Sum_probs=95.9
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCc-ccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGAS-GFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~-~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
.+..+|.++++ +++.. ....+.+ ...|+++||...... .......++++ ..+++++||..|+..+
T Consensus 104 ~~~~~~~~~~~-~~~~~----~~~~~~~----~~~~v~~D~~~~~~~~~~~~~~~~~~l-~~~di~~~n~~E~~~~---- 169 (254)
T cd01937 104 STITAEIVILG-PVPEE----ISPSLFR----KFAFISLDAQGFLRRANQEKLIKCVIL-KLHDVLKLSRVEAEVI---- 169 (254)
T ss_pred ccCcccEEEEC-CCcch----hcHHHHh----hhhheeEccccceeeccccchHHHhhc-ccCcEEEEcHHHHhhc----
Confidence 45678999885 44321 2223222 227899999752110 00001123455 4899999999999882
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
.+. .++++++.+.+...|++| |..+ +++++++.++.+..+....+++|+||+|+|.+...+.++
T Consensus 170 ----------~~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g- 235 (254)
T cd01937 170 ----------STP---TELARLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSG- 235 (254)
T ss_pred ----------CCH---HHHHHHHHHcCCCEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcC-
Confidence 112 245566666555678888 6654 455666666666555455688999999999888888886
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAG 201 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~ 201 (240)
.++.+|+.+|+.++..++
T Consensus 236 ~~~~~a~~~a~~~aa~~i 253 (254)
T cd01937 236 KDIKEAAEFAAAAAAKFI 253 (254)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 799999999998776553
No 76
>PLN02967 kinase
Probab=99.35 E-value=4.7e-11 Score=109.68 Aligned_cols=174 Identities=14% Similarity=0.070 Sum_probs=103.2
Q ss_pred hhhcccCcEEEecCC--CCCChHHHHHHHHHHHHhcCCCEEEccccc---CCccc-chHHHHHHhccCCeEEcCCHHHHH
Q 026308 26 DFTPHVRALYVNVGT--LSANWLPSMKAAAQLASQLGKPWVLDPVAA---GASGF-RLNACLELVQLKPTVIRGNASEII 99 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~---~~~~~-~~~~~~~~~~~~~~vitPN~~E~~ 99 (240)
+.+..++++.++ |+ .++.....+..+++.+++.|+++++||... +.... ......+++ ..+++|+||..|+.
T Consensus 331 ~~l~~A~i~hfg-g~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL-~~aDILk~NeeEl~ 408 (581)
T PLN02967 331 DVLKEAKMFYFN-THSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAW-NLADIIEVTKQELE 408 (581)
T ss_pred hHhcCCCEEEEe-CchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHH-HhCCEEEECHHHHH
Confidence 356788998886 43 234344667888899999999999998632 10000 011234555 37999999999999
Q ss_pred HHHcCCCCCCcCCCCCCC---hH-HHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcE---EEEEecCCcc--CCCccchh
Q 026308 100 ALSRASVGPTKGVDSSHE---SM-DAMEAARCLAEASGAIVAVS-GAVD-IVTDGRR---VVGAHNGVPM--MQKITATG 168 (240)
Q Consensus 100 ~L~g~~~~~~~~~~~~~~---~~-~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~---~~~~~~~~~~--~~~~~GaG 168 (240)
.|+|.......... ... .. ...+.++.+.+.+...|++| |..+ +++.++. +..++..... +.+++|||
T Consensus 409 ~LtG~~~~~e~~~~-~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAG 487 (581)
T PLN02967 409 FLCGIEPTEEFDTK-DNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASG 487 (581)
T ss_pred HHhCCCcccccccc-ccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchh
Confidence 99985310000000 000 00 00123455555555568888 8765 3444322 2223222222 36889999
Q ss_pred hHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHH
Q 026308 169 CSVTALIAAFVAVD------PLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 169 D~lag~iaa~la~~------~~~~~~A~~~A~~~~~~a~~ 202 (240)
|+|.|.+...+..+ ..++.+++++|+++.+++..
T Consensus 488 DAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt 527 (581)
T PLN02967 488 DGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQW 527 (581)
T ss_pred HHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhc
Confidence 99977776666642 14578899999887766544
No 77
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.33 E-value=7.1e-11 Score=99.31 Aligned_cols=141 Identities=14% Similarity=0.072 Sum_probs=96.7
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCC
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASV 106 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~ 106 (240)
.++.+|++++++..+ ..++++.+++.+ ++++|+... .+.....++++ .+++++||..|+..+++
T Consensus 118 ~~~~~~~~~~~~~~~-------~~~~~~~a~~~~-~~~~d~~~~----~~~~~~~~~~~-~~d~~~~n~~e~~~l~~--- 181 (265)
T cd01947 118 ILDEGDGVFITAAAV-------DKEAIRKCRETK-LVILQVTPR----VRVDELNQALI-PLDILIGSRLDPGELVV--- 181 (265)
T ss_pred HhccCCEEEEecccc-------cHHHHHHHHHhC-CeEeccCcc----ccchhHHHHhh-hCCEEEeCHHHHHHhhh---
Confidence 467889999864321 134456666664 678888652 11122345553 78999999999988753
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCCC
Q 026308 107 GPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDPL 184 (240)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~~ 184 (240)
++.+.+.+...|++| |..+ +++++++.++++..+..+.+++|+||+|.|.+...+.++ .
T Consensus 182 ------------------~~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g-~ 242 (265)
T cd01947 182 ------------------AEKIAGPFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKG-W 242 (265)
T ss_pred ------------------HHHHHhccCCEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcC-C
Confidence 123444455668888 8765 445666677777555566788999999988888778885 8
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 026308 185 HAFEATASALSVYGIAGE 202 (240)
Q Consensus 185 ~~~~A~~~A~~~~~~a~~ 202 (240)
++.+|+++|+..+..+.+
T Consensus 243 ~~~~al~~a~~~Aa~~v~ 260 (265)
T cd01947 243 SIEEALELGAQCGAICVS 260 (265)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999887665443
No 78
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.26 E-value=3.9e-10 Score=98.16 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=96.3
Q ss_pred hcccCcEEEecCCCCCChHHHHHHHHHHHHh-----cCCCEEEcccccCCc--ccchHHHHHHhccCCeEEcCCHHHHHH
Q 026308 28 TPHVRALYVNVGTLSANWLPSMKAAAQLASQ-----LGKPWVLDPVAAGAS--GFRLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~-----~~~~vvlDp~~~~~~--~~~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
+..++.+.++..++ .+....+++.++. .+..+++||...... ........+++ ...++++||+.|+..
T Consensus 120 ~~~~~~~~l~~ei~----~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L-~~iDil~~ne~Ea~~ 194 (335)
T PLN02630 120 YEFGMAVGVAGEIL----PETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDML-PRIGFLKASSEEALF 194 (335)
T ss_pred hcccceeeecCCCc----HHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHH-HhCCEEEecHHHHhh
Confidence 55666676653333 2456777777777 688899999862100 00011123455 379999999999987
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHH
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAF 178 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~ 178 (240)
+ .. ++. .+ . ..|++| |..+ +++++++.+.++..+....+++|+||+|.|.+...
T Consensus 195 l---~~------------~~~-------~~-~-~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~ 250 (335)
T PLN02630 195 I---DV------------EEV-------RQ-K-CCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAG 250 (335)
T ss_pred c---CH------------HHH-------cc-C-CEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHH
Confidence 6 11 111 11 1 257777 8866 44566677777765666678899999998888877
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 179 VAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 179 la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
+..+ .++.+++++|+.++..+.+
T Consensus 251 l~~g-~~~~~a~~~A~a~aa~~v~ 273 (335)
T PLN02630 251 LVQG-LAVPDAALLGNYFGSLAVE 273 (335)
T ss_pred HHcC-CCHHHHHHHHHHHHHHHhC
Confidence 8875 7999999999887665443
No 79
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.24 E-value=4.1e-10 Score=102.30 Aligned_cols=175 Identities=17% Similarity=0.038 Sum_probs=101.2
Q ss_pred hhhcccCcEEEecCCC-CCChHHHHHHHHHHHHhcCCCEEEcccc---cCCccc-chHHHHHHhccCCeEEcCCHHHHHH
Q 026308 26 DFTPHVRALYVNVGTL-SANWLPSMKAAAQLASQLGKPWVLDPVA---AGASGF-RLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~-~~~~~~~~~~~~~~~~~~~~~vvlDp~~---~~~~~~-~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
+.++.++++.++.-.+ ++...+.+..+++.+++.|++|++||.. .+.... ......+++ ..+|+|+||..|++.
T Consensus 262 ~~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l-~~aDIl~~SeeEa~~ 340 (496)
T PLN02543 262 AVLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAW-NEADIIEVSRQELEF 340 (496)
T ss_pred hHhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHH-HhCCEEEecHHHHHH
Confidence 3567889888863323 3333466778889999999999999973 111110 011234455 379999999999999
Q ss_pred HHcCCCCCCcCCCCCCC---------------hHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcCc--EEEEEe---cCC
Q 026308 101 LSRASVGPTKGVDSSHE---------------SMDAMEAARCLAEASGAIVAVS-GAVDI-VTDGR--RVVGAH---NGV 158 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~---------------~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~~--~~~~~~---~~~ 158 (240)
|+|......+....... ..+. +.+..+.+.+...||+| |..+. ++.++ +..... ..+
T Consensus 341 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~ 419 (496)
T PLN02543 341 LLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLIT 419 (496)
T ss_pred HhCCCcccccccccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCC
Confidence 99864200000000000 0011 22345555555568888 87654 33321 211000 001
Q ss_pred ccCCCccchhhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHH
Q 026308 159 PMMQKITATGCSVTALIAAFVAV------DPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 159 ~~~~~~~GaGD~lag~iaa~la~------~~~~~~~A~~~A~~~~~~a~~ 202 (240)
....+++||||+|.|.+...|.. .+.++.+++++|+++.+.+..
T Consensus 420 ~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt 469 (496)
T PLN02543 420 PFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQW 469 (496)
T ss_pred CCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHc
Confidence 11357899999997766666653 125788999999887665543
No 80
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.24 E-value=6.9e-10 Score=93.20 Aligned_cols=145 Identities=13% Similarity=-0.002 Sum_probs=97.0
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
+.++.+|+++++. .. ....+++.+++.++++++||.... ......+++ ...+++.+|..+
T Consensus 109 ~~l~~~~~v~~~~-~~------~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~-~~~d~~~~~~~~-------- 168 (260)
T PRK09813 109 AWLAQYDIVHAAI-WG------HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLV-PHLDYAFASAPQ-------- 168 (260)
T ss_pred HHHHhCCEEEEec-cc------hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhC-CceeEEEecCCc--------
Confidence 3466788888752 11 124566777889999999997521 111223444 366777776321
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCcc-EEEcCcEEEEEecCCccCCCccchhhHHHHHHHHHHhcCC
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVD-IVTDGRRVVGAHNGVPMMQKITATGCSVTALIAAFVAVDP 183 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~-~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~~~ 183 (240)
...++.+.++.+.+.+...|++| |..+ +++++++.++.+..+....+++|+||+|.|.+...+..+
T Consensus 169 -----------~~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g- 236 (260)
T PRK09813 169 -----------EDEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAG- 236 (260)
T ss_pred -----------chHHHHHHHHHHHHcCCCEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcC-
Confidence 12234556667766666678888 8765 445666777777655566788999999988887777775
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026308 184 LHAFEATASALSVYGIAGE 202 (240)
Q Consensus 184 ~~~~~A~~~A~~~~~~a~~ 202 (240)
.++.+++++|+..++.+.+
T Consensus 237 ~~~~~al~~a~~~aa~~~~ 255 (260)
T PRK09813 237 MTLPQAMAQGTACAAKTIQ 255 (260)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999987665543
No 81
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.21 E-value=5.9e-10 Score=95.05 Aligned_cols=149 Identities=11% Similarity=-0.008 Sum_probs=93.6
Q ss_pred hcccCcEEEecCCCCCChHHHHHHHHHHHHhcC-------CCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHH
Q 026308 28 TPHVRALYVNVGTLSANWLPSMKAAAQLASQLG-------KPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIA 100 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~-------~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~ 100 (240)
++++|++++. |... +....+++.+++.+ +++++|+.. .. ....++++ ..+++.+|..|++.
T Consensus 125 ~~~~~~~~~~-g~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~-----~~-~~~~~~l~-~~di~~~n~~~~~~ 192 (290)
T cd01939 125 LTQYGWIHFE-GRNP----DETLRMMQHIEEHNNRRPEIRITISVEVEK-----PR-EELLELAA-YCDVVFVSKDWAQS 192 (290)
T ss_pred hccCCEEEEe-ccCH----HHHHHHHHHHHHhcCcCCCcceEEEEEecc-----Cc-hhhhhHHh-hCCEEEEEhHHHHh
Confidence 4688999986 4432 23345566666655 577788753 11 12235553 78999999988776
Q ss_pred HHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEe-cCccE-EEcC-cEEEEEecCCc-cCCCccchhhHHHHHHH
Q 026308 101 LSRASVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVS-GAVDI-VTDG-RRVVGAHNGVP-MMQKITATGCSVTALIA 176 (240)
Q Consensus 101 L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~Vvit-G~~~~-i~~~-~~~~~~~~~~~-~~~~~~GaGD~lag~ia 176 (240)
+ +.. +.++.... +.+..++...||+| |..+. ++++ +..++++..++ ...+++||||+|.|.+.
T Consensus 193 ~-~~~-----------~~~~~~~~-~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl 259 (290)
T cd01939 193 R-GYK-----------SPEECLRG-EGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVI 259 (290)
T ss_pred c-CcC-----------CHHHHHHh-hhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHH
Confidence 4 532 22332221 12222234458888 88764 4554 34556664333 35688999999988777
Q ss_pred HHHhcCCCC-HHHHHHHHHHHHHHHHH
Q 026308 177 AFVAVDPLH-AFEATASALSVYGIAGE 202 (240)
Q Consensus 177 a~la~~~~~-~~~A~~~A~~~~~~a~~ 202 (240)
..+.++ .+ +.+|+++|+.+++...+
T Consensus 260 ~~l~~g-~~~~~~a~~~a~a~aa~~i~ 285 (290)
T cd01939 260 YALNKG-PDDLSEALDFGNRVASQKCT 285 (290)
T ss_pred HHHHcC-CccHHHHHHHHHHHHHHHHh
Confidence 777775 75 99999999987665543
No 82
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=3.1e-09 Score=89.70 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=106.5
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCC
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~ 105 (240)
..++++.++++. |+.-....+.+..+.+.+.+.+.+.+++-++..-+.+..+...+.+ +.+|+|..|+.|++.+....
T Consensus 155 ~lveka~v~yv~-Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~-~y~DiifgNe~EA~af~~~~ 232 (343)
T KOG2854|consen 155 ALVEKAKVFYVA-GFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVL-PYADIIFGNEDEAAAFARAH 232 (343)
T ss_pred hhhhheeEEEEE-EEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhc-CcceEEEcCHHHHHHHHHhh
Confidence 477889999996 7722222366788888899999989988877433322222223333 47899999999999997643
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHH---hcCCEEEEe-cCccEE-EcCcEEEEEec---CCccCCCccchhhHHHHHHHH
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAE---ASGAIVAVS-GAVDIV-TDGRRVVGAHN---GVPMMQKITATGCSVTALIAA 177 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~---~~~~~Vvit-G~~~~i-~~~~~~~~~~~---~~~~~~~~~GaGD~lag~iaa 177 (240)
. .+. .+..++......+-+ ..+..+++| |....+ ..++.++..+. +.....++.|+||+|+|.+.+
T Consensus 233 ~-----~~t-~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~ 306 (343)
T KOG2854|consen 233 G-----WET-KDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLS 306 (343)
T ss_pred C-----Ccc-cchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHH
Confidence 1 111 222222222222222 224458888 776544 44455544332 224566889999999888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHH
Q 026308 178 FVAVDPLHAFEATASALSVYGIAGE 202 (240)
Q Consensus 178 ~la~~~~~~~~A~~~A~~~~~~a~~ 202 (240)
.+.++ .++.+.++.+.+..+.+++
T Consensus 307 ~l~qg-~~l~~cir~g~~aa~~vi~ 330 (343)
T KOG2854|consen 307 QLVQG-KSLEECIRAGSYAASHVIR 330 (343)
T ss_pred HHHcC-CCHHHHHHHHHHHhhheee
Confidence 88886 7999999888876555443
No 83
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=4.9e-09 Score=89.28 Aligned_cols=170 Identities=16% Similarity=0.006 Sum_probs=94.0
Q ss_pred cCCCcccC-CCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCe
Q 026308 11 AGASPAML-HTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPT 89 (240)
Q Consensus 11 ~g~~~~~~-~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~ 89 (240)
.|++.-|. ...+-..+.++.+.+++++..++.+...... ++++ ++++.+|.+.-. +. ....+ ...+
T Consensus 119 ~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~----~~~~---~~~~~~~g~~i~--~~---pn~~l-~l~~ 185 (330)
T KOG2855|consen 119 RGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSL----HIAA---VKVAKNAGPAIF--YD---PNLRL-PLWD 185 (330)
T ss_pred ecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHH----HHhh---hhhhhccccccc--CC---CCccc-cccc
Confidence 45555444 2233446788899999999887655433222 2222 344444443110 00 00111 2456
Q ss_pred EEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHH--------HHHHHhcCCEEEEe-cCcc-EEEcCcEE-EEEecCC
Q 026308 90 VIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAA--------RCLAEASGAIVAVS-GAVD-IVTDGRRV-VGAHNGV 158 (240)
Q Consensus 90 vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a--------~~l~~~~~~~Vvit-G~~~-~i~~~~~~-~~~~~~~ 158 (240)
++.||+.|++.+++..- +.. .+.++. +.. .+|.....+.||+| |..+ .+++.+.. .+++...
T Consensus 186 ~~~~ne~e~~~i~~~ad-----v~~-~s~~e~-~fl~~~~~~~~~~L~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~~~ 258 (330)
T KOG2855|consen 186 SLEENESEIASIWNMAD-----VIK-VSSQEL-AFLTGIEDDKILKLWHMKLKLVIVTLGEKGCRYYTKDFKGSHVPAFK 258 (330)
T ss_pred cccccHHHHHHHhhhhh-----ccc-ccHHHH-HHhccCccchHHHHhccCCCEEEEEeCCCceEEEecCCCCCCCCCcc
Confidence 77777777777766421 000 011110 010 24666656778888 8765 44443222 3455555
Q ss_pred ccCCCccchhhHHHHHHHHHHhcCC-CC---HHHHHHHHHHHHHHH
Q 026308 159 PMMQKITATGCSVTALIAAFVAVDP-LH---AFEATASALSVYGIA 200 (240)
Q Consensus 159 ~~~~~~~GaGD~lag~iaa~la~~~-~~---~~~A~~~A~~~~~~a 200 (240)
....+++||||+|.|+|+..|+.+. .+ +.+++++|..++..+
T Consensus 259 V~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~~ai~ 304 (330)
T KOG2855|consen 259 VKAVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANACGAIT 304 (330)
T ss_pred cccccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhhHH
Confidence 5567889999999999999999830 23 556777777665554
No 84
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=95.49 E-value=0.14 Score=45.98 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=75.8
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHc-CCCCC
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSR-ASVGP 108 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g-~~~~~ 108 (240)
.++.+++...+ + ...+.++.+ ++.+..+|++.|.-.+... ...+-++....+.|+||..|+-.... ..+
T Consensus 425 ~a~~I~~DsNi-S---~~~Ma~il~-ak~~k~~V~fEPTd~~k~~---K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v-- 494 (614)
T KOG3009|consen 425 SADFILLDSNI-S---VPVMARILE-AKKHKKQVWFEPTDIDKVK---KVFKTLLVGAITAISPNANELLKAAKLCHV-- 494 (614)
T ss_pred cCCEEEEcCCC-C---HHHHHHHHH-hhhccCceEecCCCchhhh---hhhhhcceeeEEeeCCCHHHHHHHhhcCce--
Confidence 78888887443 3 245567776 8888999999997533111 11112222357999999999843321 111
Q ss_pred CcCCCC--CCChHHHHHHHHHHHHh--cCC-EEEEe-cCcc-EE-E-cCcEEEEEec--CCcc---CCCccchhhHHHHH
Q 026308 109 TKGVDS--SHESMDAMEAARCLAEA--SGA-IVAVS-GAVD-IV-T-DGRRVVGAHN--GVPM---MQKITATGCSVTAL 174 (240)
Q Consensus 109 ~~~~~~--~~~~~~~~~~a~~l~~~--~~~-~Vvit-G~~~-~i-~-~~~~~~~~~~--~~~~---~~~~~GaGD~lag~ 174 (240)
.+++ ....+...+.++++.++ .+. ..+.| ...+ ++ | ++.+...+.. +... ..+..|+||+|.+.
T Consensus 495 --~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g 572 (614)
T KOG3009|consen 495 --SVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSG 572 (614)
T ss_pred --eeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccc
Confidence 0010 01223444444444333 222 24444 2222 22 2 2222222111 2222 23467999999554
Q ss_pred HHHHHhcCCCCHHHHHHHH
Q 026308 175 IAAFVAVDPLHAFEATASA 193 (240)
Q Consensus 175 iaa~la~~~~~~~~A~~~A 193 (240)
+-+.++.+ .+..++..-+
T Consensus 573 ~i~~l~~~-~~v~es~~gg 590 (614)
T KOG3009|consen 573 VIAGLAHN-KTVVESLQGG 590 (614)
T ss_pred eeehhhcC-cchHhhcccc
Confidence 44446664 5666665544
No 85
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=95.11 E-value=0.07 Score=44.02 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=34.9
Q ss_pred cEEEEEecCC-ccCCCccchhhHHH-HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 026308 149 RRVVGAHNGV-PMMQKITATGCSVT-ALIAAFVAVDPLHAFEATASALSVYG 198 (240)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~GaGD~la-g~iaa~la~~~~~~~~A~~~A~~~~~ 198 (240)
+..+.++..+ +.+.++.|+||+|+ |.|=+.+.++ .++.||+.+|+..++
T Consensus 240 g~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~-r~l~eAvdfg~rvas 290 (308)
T KOG2947|consen 240 GKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQG-RSLAEAVDFGNRVAS 290 (308)
T ss_pred CCEEecCCCCCccceeeccCCCcchHHHHHHHHHhh-hhHHHHHHHHHHhhh
Confidence 4456665433 55678899999994 4555667775 789999999887543
No 86
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=89.18 E-value=10 Score=34.68 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=54.7
Q ss_pred ccCcEEEecCC--CCC-----C----hHHHHHHHHHHHHh--cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHH
Q 026308 30 HVRALYVNVGT--LSA-----N----WLPSMKAAAQLASQ--LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNAS 96 (240)
Q Consensus 30 ~~d~vvi~~G~--~~~-----~----~~~~~~~~~~~~~~--~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~ 96 (240)
+.|.++++ |+ +.+ . ..+-....++..++ .++++-+--.......++......++ +..|.+=-|+.
T Consensus 222 ~~D~avlS-G~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~il-p~vDSlGmNE~ 299 (463)
T PRK03979 222 MVDGAILS-GYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYIL-PHVDSVGMDET 299 (463)
T ss_pred CCCEEEEe-chhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhc-cccccccCCHH
Confidence 48999995 66 333 1 12223334444433 35677664333221122222223333 47899999999
Q ss_pred HHHHHHcCCCC--CCcCCCCCCChHHHHHHHHHHHHhcC
Q 026308 97 EIIALSRASVG--PTKGVDSSHESMDAMEAARCLAEASG 133 (240)
Q Consensus 97 E~~~L~g~~~~--~~~~~~~~~~~~~~~~~a~~l~~~~~ 133 (240)
|+..++..-.. ....+-..+..+++.+++.+|.++++
T Consensus 300 ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~ 338 (463)
T PRK03979 300 EIANILNVLGYEELSERILKESRIEDVIEGAKILLDELN 338 (463)
T ss_pred HHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcC
Confidence 99987642110 00111111345788888999988875
No 87
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.77 E-value=4.9 Score=28.18 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=32.7
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
+...++++|.|++-++..+- +.+..+-+.+++.++|++.=-
T Consensus 42 l~~~i~~aD~VIv~t~~vsH---~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSH---NAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEeCCcCh---HHHHHHHHHHHHcCCcEEEEC
Confidence 67788899999998888764 455777788999999988643
No 88
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=76.36 E-value=3.8 Score=37.28 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=41.6
Q ss_pred hhHHHHHcCCCcccCC----------CCCchhhhhc----ccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 4 VANTLLSAGASPAMLH----------TIEEIPDFTP----HVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~----------~~~~~~~~~~----~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+++++...|+.|+..+ +++.+++.+. +.-.+++..+. -.....+-+.++.+.|+++++++++|..
T Consensus 164 ~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaA 243 (444)
T TIGR03531 164 CIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNA 243 (444)
T ss_pred HHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECc
Confidence 5788999999984443 3334555554 22344443221 1111235567888899999999999986
Q ss_pred c
Q 026308 69 A 69 (240)
Q Consensus 69 ~ 69 (240)
-
T Consensus 244 y 244 (444)
T TIGR03531 244 Y 244 (444)
T ss_pred C
Confidence 4
No 89
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=71.16 E-value=4.4 Score=33.38 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=47.1
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHH-hcCCCEEEcccccCCcccchH--HHHHHhc-cCCeEEcCCHHHHHHHHcC
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLAS-QLGKPWVLDPVAAGASGFRLN--ACLELVQ-LKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~-~~~~~vvlDp~~~~~~~~~~~--~~~~~~~-~~~~vitPN~~E~~~L~g~ 104 (240)
..|++++| |+. +...+.+..+++.++ +.++|+++=|..........+ +.+.+++ ..+..|+.++.|...+.+.
T Consensus 41 GTDaImIG-GS~-gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~ 117 (240)
T COG1646 41 GTDAIMIG-GSD-GVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGK 117 (240)
T ss_pred CCCEEEEC-Ccc-cccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccchhhhhhHHHHh
Confidence 46999997 653 222355677777777 789999998876543221111 1234444 3678888888888877664
No 90
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=68.89 E-value=2.6 Score=34.59 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=36.2
Q ss_pred ccCCCCCchhhhhcccCcEEEe-cCC--CCCChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 16 AMLHTIEEIPDFTPHVRALYVN-VGT--LSANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 16 ~~~~~~~~~~~~~~~~d~vvi~-~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
=+..-++++++.+...+++-|| .|+ .++...+.+..-++.+++.++|+|+-.
T Consensus 80 e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHT 134 (254)
T COG1099 80 ELEEVLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHT 134 (254)
T ss_pred hHHHHHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeC
Confidence 3334444566677777888886 555 355556667777788999999999854
No 91
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=64.14 E-value=77 Score=25.74 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=54.0
Q ss_pred CcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc----cCCeEEcCCHHHHHHHHcCCCC
Q 026308 32 RALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ----LKPTVIRGNASEIIALSRASVG 107 (240)
Q Consensus 32 d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~----~~~~vitPN~~E~~~L~g~~~~ 107 (240)
..|.+..|=+.- +.+.+..+++.+++.|+.+.+|..+.. ..+...++++ ...|+--++......++|..
T Consensus 40 gGVt~SGGEPll-q~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~-- 112 (213)
T PRK10076 40 GGVTLSGGEVLM-QAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN-- 112 (213)
T ss_pred CEEEEeCchHHc-CHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC--
Confidence 577776554322 246678888999999999999999832 1222334433 23466666777778888853
Q ss_pred CCcCCCCCCChHHHHHHHHHHHHhc
Q 026308 108 PTKGVDSSHESMDAMEAARCLAEAS 132 (240)
Q Consensus 108 ~~~~~~~~~~~~~~~~~a~~l~~~~ 132 (240)
.+.+.+..+.+.+.+
T Consensus 113 ----------~~~il~nl~~l~~~g 127 (213)
T PRK10076 113 ----------LPRVLENLRLLVSEG 127 (213)
T ss_pred ----------HHHHHHHHHHHHhCC
Confidence 245566666676654
No 92
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.32 E-value=8.2 Score=34.33 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=41.0
Q ss_pred hhHHHHHcCCCcccCC--------CCCchhhhhcc-cCcEEE--ecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 4 VANTLLSAGASPAMLH--------TIEEIPDFTPH-VRALYV--NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~--------~~~~~~~~~~~-~d~vvi--~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.||+++..|+.|+..| +++.+++.+.. ..+++. =.|.+. .+ +.+.+.++++|++||-|+.-
T Consensus 87 Tan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~--dm---~~i~~la~~~~l~vIEDaAq 158 (374)
T COG0399 87 TANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPC--DM---DAIMALAKRHGLPVIEDAAQ 158 (374)
T ss_pred HHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCC--CH---HHHHHHHHHcCCeEEEEcch
Confidence 4799999999997775 33344554543 555553 134432 23 56667789999999999973
No 93
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=61.97 E-value=80 Score=25.19 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHH
Q 026308 48 SMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARC 127 (240)
Q Consensus 48 ~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~ 127 (240)
.+...++..++.|+.+.+|=.+.+... ...+....+++|+-+......+.... ......+....
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~-----~~~l~~~~~d~iKld~~~~~~~~~~~-----------~~~~~l~~l~~ 196 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSS-----LSYLKRLPVDYLKIDRSFVRDIETDP-----------EDRAIVRAIIA 196 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhh-----HHHHHhCCCCEEEECHHHHHhHhcCh-----------hhHHHHHHHHH
Confidence 356777888999999999877633211 12222246899999988877765532 12345556666
Q ss_pred HHHhcCCEEEEecCc
Q 026308 128 LAEASGAIVAVSGAV 142 (240)
Q Consensus 128 l~~~~~~~VvitG~~ 142 (240)
+.+..+..|+.+|-.
T Consensus 197 ~~~~~~~~via~gVe 211 (240)
T cd01948 197 LAHSLGLKVVAEGVE 211 (240)
T ss_pred HHHHCCCeEEEEecC
Confidence 777778889999853
No 94
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=61.08 E-value=22 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=36.0
Q ss_pred CchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccch---HHHHHHhccCCeEEcCC
Q 026308 22 EEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRL---NACLELVQLKPTVIRGN 94 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~---~~~~~~~~~~~~vitPN 94 (240)
+.+++.+..+|+++- ...+ +.....++.+.++++|+|+=..+ +.. +.++++-+.-+.++.||
T Consensus 59 ~~l~~~~~~~DVvID-fT~p-----~~~~~~~~~~~~~g~~~ViGTTG-----~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 59 DDLEELLEEADVVID-FTNP-----DAVYDNLEYALKHGVPLVIGTTG-----FSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp S-HHHHTTH-SEEEE-ES-H-----HHHHHHHHHHHHHT-EEEEE-SS-----SHHHHHHHHHHHTTTSEEEE-SS
T ss_pred hhHHHhcccCCEEEE-cCCh-----HHhHHHHHHHHhCCCCEEEECCC-----CCHHHHHHHHHHhccCCEEEeCC
Confidence 456677778997654 3322 55677788888999999986655 322 22333333457888888
No 95
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=61.05 E-value=10 Score=31.81 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=38.3
Q ss_pred hhhHHHHHcCCCc----ccCCCCCchh----hhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 3 LVANTLLSAGASP----AMLHTIEEIP----DFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 3 ~~a~~~~~~g~~~----~~~~~~~~~~----~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
|.|+=+...|-.- +.-|+++++. ...+++|+|++..|+ |+.. |...+. .++..|.++++|+..
T Consensus 25 ~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~D--DiT~e~--vAka~g~~lv~~~~a 96 (255)
T COG1058 25 FLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHD--DLTAEA--VAKALGRPLVLDEEA 96 (255)
T ss_pred HHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCcc--HhHHHH--HHHHhCCCcccCHHH
Confidence 3444444444433 2335555544 344579999998787 5544 333343 356789999999976
No 96
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=60.85 E-value=94 Score=28.42 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=57.4
Q ss_pred cccCcEEEecCC--CCCC---------hHHHHHHHHHHHHh-cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHH
Q 026308 29 PHVRALYVNVGT--LSAN---------WLPSMKAAAQLASQ-LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNAS 96 (240)
Q Consensus 29 ~~~d~vvi~~G~--~~~~---------~~~~~~~~~~~~~~-~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~ 96 (240)
..+|.++++ |+ +.+. ..+.....++..++ .++++-+--.......++......++ +..|.+=-|+.
T Consensus 208 ~~~d~~vlS-G~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~il-p~vDSlGMNE~ 285 (446)
T TIGR02045 208 EPVDGAILS-GYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIF-PHVDSVGMDEA 285 (446)
T ss_pred hcccEEEEE-chhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhc-cccccccCCHH
Confidence 458989985 66 3321 23333444444433 55777664333221112222222333 47899999999
Q ss_pred HHHHHHcCCCC--CCcCCCCCCChHHHHHHHHHHHHhcCCE
Q 026308 97 EIIALSRASVG--PTKGVDSSHESMDAMEAARCLAEASGAI 135 (240)
Q Consensus 97 E~~~L~g~~~~--~~~~~~~~~~~~~~~~~a~~l~~~~~~~ 135 (240)
|+..++..-.. ....+...+..+++.+++..|.++++..
T Consensus 286 ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~le 326 (446)
T TIGR02045 286 EIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLE 326 (446)
T ss_pred HHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCC
Confidence 99998732100 0011111234668888999999987654
No 97
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.27 E-value=9.8 Score=31.27 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.3
Q ss_pred cCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 31 VRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 31 ~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
.|++++| |+.. .+.+.+..+++.++++.+|+|+=|...
T Consensus 28 tdai~vG-GS~~-vt~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 28 TDAILIG-GSQG-VTYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred CCEEEEc-CCCc-ccHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 5999997 6532 123456777788888899999977553
No 98
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=58.17 E-value=94 Score=24.78 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHH
Q 026308 48 SMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARC 127 (240)
Q Consensus 48 ~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~ 127 (240)
.....++.+++.|+.+.+|=.+.+...+ ..+....++.|+-+..-...+.... ......+....
T Consensus 134 ~~~~~i~~l~~~G~~ialddfg~~~~~~-----~~l~~l~~d~iKld~~~~~~~~~~~-----------~~~~~l~~l~~ 197 (241)
T smart00052 134 SAVATLQRLRELGVRIALDDFGTGYSSL-----SYLKRLPVDLLKIDKSFVRDLQTDP-----------EDEAIVQSIIE 197 (241)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCcHHHH-----HHHHhCCCCeEEECHHHHhhhccCh-----------hHHHHHHHHHH
Confidence 3446678889999999999876432211 1222236889988776655543321 12345566667
Q ss_pred HHHhcCCEEEEecCc
Q 026308 128 LAEASGAIVAVSGAV 142 (240)
Q Consensus 128 l~~~~~~~VvitG~~ 142 (240)
+.+..+..|+.+|-.
T Consensus 198 ~~~~~~~~via~gVe 212 (241)
T smart00052 198 LAQKLGLQVVAEGVE 212 (241)
T ss_pred HHHHCCCeEEEecCC
Confidence 777788889999863
No 99
>PRK05968 hypothetical protein; Provisional
Probab=57.84 E-value=26 Score=31.13 Aligned_cols=62 Identities=23% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHcCCCcccC--CCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 7 TLLSAGASPAML--HTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 7 ~~~~~g~~~~~~--~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
.+-..|..+... .+++++++.+++.+.|++..=.-.-....-+.++.+.++++++++|+|..
T Consensus 122 ~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 122 ILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred HHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 344456666332 34566666666667776641111111234567888899999999999984
No 100
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=52.09 E-value=15 Score=30.41 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=28.2
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccC
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAG 71 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~ 71 (240)
..|++++| |+.. .+.+.+..+++..++..+|+|+=|....
T Consensus 32 gtdai~vG-GS~~-vt~~~~~~~v~~ik~~~lPvilfp~~~~ 71 (232)
T PRK04169 32 GTDAIIVG-GSDG-VTEENVDELVKAIKEYDLPVILFPGNIE 71 (232)
T ss_pred CCCEEEEc-CCCc-cchHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 46999997 6532 1235567777888888899999776543
No 101
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=51.20 E-value=94 Score=25.86 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHH
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAAR 126 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~ 126 (240)
+.....++.+++.|+++.+|=-|.+.+++. .+....+++||=...-...+.... ....+.+..-
T Consensus 136 ~~~~~~l~~L~~~G~~ialDDFGtG~ssl~-----~L~~l~~d~iKID~~fi~~i~~~~-----------~~~~iv~~iv 199 (256)
T COG2200 136 DTALALLRQLRELGVRIALDDFGTGYSSLS-----YLKRLPPDILKIDRSFVRDLETDA-----------RDQAIVRAIV 199 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHH-----HHhhCCCCeEEECHHHHhhcccCc-----------chHHHHHHHH
Confidence 356778889999999999999885543321 222247899999887766665432 2235677777
Q ss_pred HHHHhcCCEEEEecCc
Q 026308 127 CLAEASGAIVAVSGAV 142 (240)
Q Consensus 127 ~l~~~~~~~VvitG~~ 142 (240)
.++++.+..||.-|-.
T Consensus 200 ~la~~l~~~vvaEGVE 215 (256)
T COG2200 200 ALAHKLGLTVVAEGVE 215 (256)
T ss_pred HHHHHCCCEEEEeecC
Confidence 8888888888888863
No 102
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=51.06 E-value=47 Score=29.84 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCchhhhhcccC----cEEE-----ecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeE
Q 026308 20 TIEEIPDFTPHVR----ALYV-----NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTV 90 (240)
Q Consensus 20 ~~~~~~~~~~~~d----~vvi-----~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~v 90 (240)
+...++++++... +|++ ..|+.+.. .+.+..+.+.|++.++++|+|=++-+.+..-.....+.+...||+
T Consensus 192 d~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~-peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI 270 (433)
T KOG1401|consen 192 DSTALEKLFESHKGEIAAVIVEPIQGAGGIIPAD-PEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDI 270 (433)
T ss_pred CHHHHHHHHHhCCCceEEEEEecccCCCCcccCC-HHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcc
Confidence 4445566665333 4444 23553333 466778888899999999999998654333223345555556676
Q ss_pred EcC
Q 026308 91 IRG 93 (240)
Q Consensus 91 itP 93 (240)
+|-
T Consensus 271 ~t~ 273 (433)
T KOG1401|consen 271 TTV 273 (433)
T ss_pred eee
Confidence 664
No 103
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.63 E-value=14 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred cCcEEEecCCCCCChHHHHHHHHHHHHh-cCCCEEEccccc
Q 026308 31 VRALYVNVGTLSANWLPSMKAAAQLASQ-LGKPWVLDPVAA 70 (240)
Q Consensus 31 ~d~vvi~~G~~~~~~~~~~~~~~~~~~~-~~~~vvlDp~~~ 70 (240)
.|.+++| |+. +...+.+.++++.+|+ .++|+++=|...
T Consensus 25 tDaI~VG-GS~-gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 25 TDAIMVG-GSL-GIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred CCEEEEc-CcC-CCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 6999997 552 1223555677777777 679999977653
No 104
>PRK06739 pyruvate kinase; Validated
Probab=47.27 E-value=22 Score=31.37 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=33.1
Q ss_pred CchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 22 EEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.+.++++.+|.+++. .|. +-+.....-+++++.|++.++|+|+=.-+
T Consensus 221 ~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqm 273 (352)
T PRK06739 221 ENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQM 273 (352)
T ss_pred HHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcch
Confidence 3456778889999984 333 22222333467889999999999986665
No 105
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=46.50 E-value=1.2e+02 Score=24.81 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=58.2
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHHHHHHHcCCCCC
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASEIIALSRASVGP 108 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E~~~L~g~~~~~ 108 (240)
.+|++.+ .|.-+. ..+...++.++++|+.+.+|-.+.+. +....+.++ ..++++--|.+==..+.|...
T Consensus 80 GAd~~tV-~g~A~~---~TI~~~i~~A~~~~~~v~iDl~~~~~----~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~-- 149 (217)
T COG0269 80 GADWVTV-LGAADD---ATIKKAIKVAKEYGKEVQIDLIGVWD----PEQRAKWLKELGVDQVILHRGRDAQAAGKSW-- 149 (217)
T ss_pred CCCEEEE-EecCCH---HHHHHHHHHHHHcCCeEEEEeecCCC----HHHHHHHHHHhCCCEEEEEecccHhhcCCCc--
Confidence 5788877 465333 55688889999999999999987542 222223333 578888777765555566543
Q ss_pred CcCCCCCCChHHHHHHHHHHHHhcCCEEEEecCc
Q 026308 109 TKGVDSSHESMDAMEAARCLAEASGAIVAVSGAV 142 (240)
Q Consensus 109 ~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~~ 142 (240)
. .+.....+++.+.+ ..|-++|+.
T Consensus 150 --------~-~~~l~~ik~~~~~g-~~vAVaGGI 173 (217)
T COG0269 150 --------G-EDDLEKIKKLSDLG-AKVAVAGGI 173 (217)
T ss_pred --------c-HHHHHHHHHhhccC-ceEEEecCC
Confidence 1 23334455555433 557888763
No 106
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=45.28 E-value=79 Score=25.88 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHHH
Q 026308 20 TIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASEI 98 (240)
Q Consensus 20 ~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E~ 98 (240)
++++..+-+..+|.++. .++.+ +..-.+.+.+++.+.+.|+=|......+++.. +++.+. ....+..|.. +
T Consensus 41 ~pee~Lp~i~~~Dl~I~-y~lHP----Dl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~-lk~~~e~~gi~~~~P~~--~ 112 (217)
T PF02593_consen 41 DPEEYLPKIPEADLLIA-YGLHP----DLTYELPEIAKEAGVKAVIVPSESPKPGLRRQ-LKKQLEEFGIEVEFPKP--F 112 (217)
T ss_pred ChHHHccCCCCCCEEEE-eccCc----hhHHHHHHHHHHcCCCEEEEecCCCccchHHH-HHHHHHhcCceeecCcc--c
Confidence 34444444678898875 45533 45567888888899888876654332233332 233333 4578888873 6
Q ss_pred HHHH
Q 026308 99 IALS 102 (240)
Q Consensus 99 ~~L~ 102 (240)
+.|-
T Consensus 113 CsL~ 116 (217)
T PF02593_consen 113 CSLE 116 (217)
T ss_pred cccC
Confidence 6653
No 107
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=45.23 E-value=32 Score=29.10 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=35.4
Q ss_pred hHHHHHcCCCcccC-------------CCCCchhhhhc---ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 5 ANTLLSAGASPAML-------------HTIEEIPDFTP---HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 5 a~~~~~~g~~~~~~-------------~~~~~~~~~~~---~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
.+++...|+.|+.. .+++.+++.++ +...+++........ ..-++++.+.++++++++++|-.
T Consensus 113 ~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~-~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 113 INGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGI-CYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred HHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCE-ecCHHHHHHHHHhcCCeEEEECc
Confidence 34556667766322 12334555543 345566642222222 12257788888899999999976
No 108
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=44.06 E-value=72 Score=24.84 Aligned_cols=61 Identities=10% Similarity=0.123 Sum_probs=34.4
Q ss_pred hhHHHHHcCCCcccCCCCCchhhh-hcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE
Q 026308 4 VANTLLSAGASPAMLHTIEEIPDF-TPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~~~~~~~~~-~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv 64 (240)
.++.+...|+.+.+...-....+. ....|.+++.+|.-+........++++.+.+.++|++
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~Pvl 73 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIF 73 (178)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEE
Confidence 356677788888544222223222 2368999997664232222334556666777777764
No 109
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=43.53 E-value=40 Score=28.72 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=38.3
Q ss_pred cEEEecCC-C--C--CChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHh--ccCCeEEcCC
Q 026308 33 ALYVNVGT-L--S--ANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELV--QLKPTVIRGN 94 (240)
Q Consensus 33 ~vvi~~G~-~--~--~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~--~~~~~vitPN 94 (240)
+..+++|+ . . ..-+..++++++.+++.+.+|++|..-.+-+..-....+.++ ...+|.+|-|
T Consensus 54 v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVh 122 (278)
T PRK00125 54 VAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVS 122 (278)
T ss_pred ccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEEC
Confidence 34567776 1 1 222346777899999999999999976543221112234444 3457888888
No 110
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=42.94 E-value=30 Score=31.90 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=32.5
Q ss_pred chhhhhcccCcEEEecCCC-----CCChHHHHHHHHHHHHhcCCCEEE
Q 026308 23 EIPDFTPHVRALYVNVGTL-----SANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-----~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
.+.++++.+|.++++.|=+ .++.....+++++.|+++|+|+++
T Consensus 230 nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 230 NFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred hHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4566777899999986642 233445667899999999999997
No 111
>PRK03673 hypothetical protein; Provisional
Probab=42.47 E-value=51 Score=29.62 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=40.7
Q ss_pred hhhHHHHHcCCCc----ccCCCCCchhhh----hcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 3 LVANTLLSAGASP----AMLHTIEEIPDF----TPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 3 ~~a~~~~~~g~~~----~~~~~~~~~~~~----~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
+.+..+...|... +..|+.+++.+. .+++|.|++..|+ +... |...+++ ++..|.|+++|+...
T Consensus 25 ~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~d--D~t~~av--A~a~g~~L~~d~e~~ 97 (396)
T PRK03673 25 WLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSD--DLSALAA--ATAAGEGLVLHEEWL 97 (396)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCc--ccHHHHH--HHHcCCCceeCHHHH
Confidence 4455666677655 234666665544 4478999997776 4333 4445544 455789999999873
No 112
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=42.26 E-value=23 Score=30.50 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=25.0
Q ss_pred chhhhhcccCcEEEecCCC-CCC-hHHHHHHHHHHHHhcCCCEE
Q 026308 23 EIPDFTPHVRALYVNVGTL-SAN-WLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-~~~-~~~~~~~~~~~~~~~~~~vv 64 (240)
++.+.+..+|.|+++||.+ .+- ++-.+..+.+.+++...|+|
T Consensus 176 ~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV 219 (303)
T cd07186 176 EVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVV 219 (303)
T ss_pred HHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEE
Confidence 4566778899999999874 221 22233445555555554444
No 113
>PTZ00300 pyruvate kinase; Provisional
Probab=41.64 E-value=32 Score=31.45 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=33.6
Q ss_pred CchhhhhcccCcEEEecCCC-----CCChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 22 EEIPDFTPHVRALYVNVGTL-----SANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~~-----~~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
+.+.++++.+|.++++.|-+ .+......+++++.|++.|+|+|+=.
T Consensus 202 ~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~AT 252 (454)
T PTZ00300 202 QNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICAT 252 (454)
T ss_pred HhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34567778999999976642 23334456788899999999999833
No 114
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=41.61 E-value=1.5e+02 Score=27.15 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=57.2
Q ss_pred ccCcEEEecCC--CCC------ChHHHHHHHHHHHHh-----cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHH
Q 026308 30 HVRALYVNVGT--LSA------NWLPSMKAAAQLASQ-----LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNAS 96 (240)
Q Consensus 30 ~~d~vvi~~G~--~~~------~~~~~~~~~~~~~~~-----~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~ 96 (240)
+.|.++++ |+ +.+ ...+.++++.+..+. .++++-+--.......++......++ +..|.+=-|+.
T Consensus 210 ~~D~avlS-G~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Il-p~VDSlGmNEq 287 (453)
T PRK14039 210 EMDGALIS-GFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILA-GIVDSIGMNED 287 (453)
T ss_pred CCCEEEEe-chhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhh-cccccccCCHH
Confidence 78999995 66 322 123334444433332 34667664333221112222223333 47899999999
Q ss_pred HHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCE
Q 026308 97 EIIALSRASVGPTKGVDSSHESMDAMEAARCLAEASGAI 135 (240)
Q Consensus 97 E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~ 135 (240)
|+..++..-.-...++-. .+.+++.+++.+|.++++..
T Consensus 288 ELa~l~~~~g~~~~~i~~-~~~~~v~ea~~~l~~~~~le 325 (453)
T PRK14039 288 ELAMLANLHGIPAEGILE-MNAEAIGEAACQLASESGLQ 325 (453)
T ss_pred HHHHHHHHcccchhhHhh-cCHHHHHHHHHHHHHHcCCC
Confidence 999998652100011111 34678889999999998754
No 115
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=41.59 E-value=1.9e+02 Score=24.58 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=40.8
Q ss_pred chhhhhcc-cCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc--cCCeEEcCCHH
Q 026308 23 EIPDFTPH-VRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ--LKPTVIRGNAS 96 (240)
Q Consensus 23 ~~~~~~~~-~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~--~~~~vitPN~~ 96 (240)
.+.+.+.. +|.|+|..-.| +.+...++.+.++++|+|+=..+ +..+...++.. .-+.++.||..
T Consensus 60 ~l~~~~~~~~d~VvIDFT~P-----~~~~~n~~~~~~~gv~~ViGTTG-----~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 60 RIGEVFAKYPELICIDYTHP-----SAVNDNAAFYGKHGIPFVMGTTG-----GDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred cHHHHHhhcCCEEEEECCCh-----HHHHHHHHHHHHCCCCEEEcCCC-----CCHHHHHHHHHhcCCCEEEECccc
Confidence 34444444 77677765433 45566788899999999987776 33333333332 35789999944
No 116
>PRK05826 pyruvate kinase; Provisional
Probab=41.28 E-value=34 Score=31.41 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=34.5
Q ss_pred chhhhhcccCcEEEecCC-----CCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 23 EIPDFTPHVRALYVNVGT-----LSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~-----~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+.++++.+|.++++.|= ..+......+++++.|+++|+|+++-.-+
T Consensus 230 nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqm 281 (465)
T PRK05826 230 NIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQM 281 (465)
T ss_pred hHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 455677779999997663 23334556688999999999999986443
No 117
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=40.46 E-value=25 Score=30.81 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=37.8
Q ss_pred hhhHHHHHcCCCcccCC--------CCCchhhhhc-ccCcEEEe--cCCCCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 3 LVANTLLSAGASPAMLH--------TIEEIPDFTP-HVRALYVN--VGTLSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 3 ~~a~~~~~~g~~~~~~~--------~~~~~~~~~~-~~d~vvi~--~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
-++++++..|+.|+-.+ +++.++..+. +.++|++- .|.+. -+..+.+.++++|+++|-|..-.
T Consensus 77 ~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G~~~-----d~~~i~~~~~~~~i~lIeD~a~a 150 (363)
T PF01041_consen 77 ATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFGNPA-----DMDAIRAIARKHGIPLIEDAAQA 150 (363)
T ss_dssp HHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGGB--------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred HHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCCCcc-----cHHHHHHHHHHcCCcEEEccccc
Confidence 36799999999996554 3334444443 45666652 35442 24677778899999999998643
No 118
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=40.38 E-value=53 Score=26.44 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCCCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 19 HTIEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 19 ~~~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++.+.+.+.++.+|++++-.+...+...+.-..+++.+++.|++.++ |+.
T Consensus 53 ~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v-~ss 102 (233)
T PF05368_consen 53 DDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV-PSS 102 (233)
T ss_dssp T-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE-ESE
T ss_pred CCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE-EEE
Confidence 35566777888889988877754455566677888888888888777 544
No 119
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=40.22 E-value=89 Score=29.03 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhHHHHHcCCCcccCCCC---CchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCC-CEEEcccc
Q 026308 4 VANTLLSAGASPAMLHTI---EEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK-PWVLDPVA 69 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~~~---~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~-~vvlDp~~ 69 (240)
++...+-.|+.-+.+-+- +++.+.....++-++-.=+-.+...+.+.+.++.+.+.|+ ++++||..
T Consensus 220 v~eaAL~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPgl 289 (499)
T TIGR00284 220 ELYEALKAGASGVIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSL 289 (499)
T ss_pred HHHHHHHcCCCEEEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCC
Confidence 344556667766555322 2333334444333332111122334677888888999998 89999976
No 120
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=39.93 E-value=2.8e+02 Score=25.53 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=57.7
Q ss_pred hhhcccCcEEEecCC--CCCC-hHHHHHHHHHHHHh---cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHH
Q 026308 26 DFTPHVRALYVNVGT--LSAN-WLPSMKAAAQLASQ---LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEII 99 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~--~~~~-~~~~~~~~~~~~~~---~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~ 99 (240)
++..+.|.++++ |+ +... ..+.++++.+..+. .++++-+.-........+... .+.+ +..|-+--|+.|+.
T Consensus 220 ei~~~~Dl~vlS-G~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~d~~~r~~i-~~il-p~vDSlGmNE~ELa 296 (453)
T PRK14038 220 EIAKKAELAIIS-GLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTPDETVREEI-LGLL-GKFYSVGLNEVELA 296 (453)
T ss_pred hhccCCCEEEEE-chhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccchHHHHHHH-HhhC-ccccccccCHHHHH
Confidence 455678999995 76 3322 23334444444333 456666544331111112111 1233 46788889999999
Q ss_pred HHHcCCCC--CCcCCCC--CCChHHHHHHHHHHHHhcCCE
Q 026308 100 ALSRASVG--PTKGVDS--SHESMDAMEAARCLAEASGAI 135 (240)
Q Consensus 100 ~L~g~~~~--~~~~~~~--~~~~~~~~~~a~~l~~~~~~~ 135 (240)
.++..-.. ...++-. +.+.+++.+++.+|.++++..
T Consensus 297 ~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gle 336 (453)
T PRK14038 297 SIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVK 336 (453)
T ss_pred HHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCC
Confidence 98762110 0011111 125678899999999988743
No 121
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=44 Score=29.10 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=24.0
Q ss_pred chhhhhcccCcEEEecCCC-CCC-hHHHHHHHHHHHHhcCCCEE
Q 026308 23 EIPDFTPHVRALYVNVGTL-SAN-WLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-~~~-~~~~~~~~~~~~~~~~~~vv 64 (240)
++-+.++++|.|++|||.+ ++- ++=.+..+.+..++.-.|+|
T Consensus 182 eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i 225 (323)
T COG0391 182 EAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIV 225 (323)
T ss_pred HHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEE
Confidence 4556778899999998874 221 22233445454555444443
No 122
>PRK06354 pyruvate kinase; Provisional
Probab=39.42 E-value=38 Score=32.15 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=32.4
Q ss_pred chhhhhcccCcEEEecCC-----CCCChHHHHHHHHHHHHhcCCCEEE
Q 026308 23 EIPDFTPHVRALYVNVGT-----LSANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~-----~~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
.+.++++.+|.++++.|= +.+......+++++.|++.++|+|+
T Consensus 235 nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 235 NIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred hHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 456677789999997654 2333445668899999999999996
No 123
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.01 E-value=30 Score=30.87 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCCchhhhhc---ccCcEEE-----ecCCCCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 20 TIEEIPDFTP---HVRALYV-----NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 20 ~~~~~~~~~~---~~d~vvi-----~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
+++++++.++ ..+.|.+ .+|++++ +..+.+.+++++..+|||++..
T Consensus 118 ~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp-----l~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 118 DPEEVEEALDKDPDIKAVAVVHNETSTGVLNP-----LKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred CHHHHHHHHhcCCCccEEEEEeccCcccccCc-----HHHHHHHHHHcCCEEEEEeccc
Confidence 4556666665 3445544 4666653 3667777899999999999864
No 124
>PLN02762 pyruvate kinase complex alpha subunit
Probab=37.89 E-value=37 Score=31.57 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.3
Q ss_pred CchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEE
Q 026308 22 EEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
+.+.++++.+|.+++. .|+ +-+.....-+.+++.|++.++|+|+
T Consensus 260 ~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 260 KNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 3466788899999984 333 3233233336789999999999997
No 125
>PRK09206 pyruvate kinase; Provisional
Probab=37.81 E-value=37 Score=31.25 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=33.0
Q ss_pred chhhhhcccCcEEEecCCC-----CCChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 23 EIPDFTPHVRALYVNVGTL-----SANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-----~~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
.+.++++.+|.++++.|=+ .+......+++++.|++.|+|+|+=.
T Consensus 229 nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 229 NFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred hHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4566777899999976642 23334556788899999999999833
No 126
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=37.45 E-value=65 Score=21.98 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCEEEcccc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..-.++++.++++++|++=||..
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~L 49 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPDL 49 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHH
Confidence 34578889999999999999976
No 127
>PTZ00066 pyruvate kinase; Provisional
Probab=36.99 E-value=38 Score=31.52 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.0
Q ss_pred CchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEE
Q 026308 22 EEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
+.+.++++.+|.+++. .|. +-+.....-+++++.|++.++|+|+
T Consensus 265 ~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 265 INFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred HHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEE
Confidence 3467788899999984 333 3222223337788999999999997
No 128
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=36.14 E-value=20 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred Cchhhhh-cccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 22 EEIPDFT-PHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 22 ~~~~~~~-~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++ ...+++++|+|...- ......+.+.+++.++.|++-|.+
T Consensus 52 eEle~~lee~~E~ivvGTG~~G~--l~l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 52 EELEELLEEGPEVIVVGTGQSGM--LELSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred HHHHHHHhcCCcEEEEecCceeE--EEeCHHHHHHHHhcCCeEEEeCCH
Confidence 3444444 478999998875211 122356667788889999998876
No 129
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=36.09 E-value=47 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCEEEcccc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..-+++++.++++++|+.=||..
T Consensus 32 ~iAe~II~~Ake~~Vpi~edp~L 54 (92)
T COG2257 32 EIAEKIIEKAKEHGVPIQEDPLL 54 (92)
T ss_pred HHHHHHHHHHHHcCCCcccCHHH
Confidence 45588999999999999999976
No 130
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=35.75 E-value=47 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=27.0
Q ss_pred chhhhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 23 EIPDFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.++.+++||++++ +|+ +-+.++ ..+++.+++....+++=|..
T Consensus 55 ~~~~~l~~aD~vii-TGsTlvN~Ti---~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 55 DAEEILPWADVVII-TGSTLVNGTI---DDILELARNAREVILYGPSA 98 (147)
T ss_dssp GHHHHGGG-SEEEE-ECHHCCTTTH---HHHHHHTTTSSEEEEESCCG
T ss_pred HHHHHHccCCEEEE-EeeeeecCCH---HHHHHhCccCCeEEEEecCc
Confidence 45678899999998 577 544444 67777777443445555654
No 131
>PLN02461 Probable pyruvate kinase
Probab=35.70 E-value=43 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred CchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEE
Q 026308 22 EEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
+.+.++++.+|.+++. .|. +-+.....-+++++.|++.++|||+
T Consensus 249 ~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIv 297 (511)
T PLN02461 249 DNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVT 297 (511)
T ss_pred HHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEE
Confidence 3466788899999984 333 2222222336788999999999997
No 132
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=35.35 E-value=83 Score=27.63 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=35.8
Q ss_pred HcCCCcccC--CCCCchhhhhc-ccCcEEE-ecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 10 SAGASPAML--HTIEEIPDFTP-HVRALYV-NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 10 ~~g~~~~~~--~~~~~~~~~~~-~~d~vvi-~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..|..+... .+++++++.+. +.+.|++ .+..+.- ...-++++.+.++++++++|+|-.-
T Consensus 113 ~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~-~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 113 KWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLM-QETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred ccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCC-cHHHHHHHHHHHHHcCCEEEEECCC
Confidence 355555322 34555655553 4566665 3332321 2345688889999999999999753
No 133
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=35.13 E-value=34 Score=29.60 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=15.6
Q ss_pred CchhhhhcccCcEEEecCCC
Q 026308 22 EEIPDFTPHVRALYVNVGTL 41 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~~ 41 (240)
+++.+.+..+|.++++||.+
T Consensus 164 ~~al~AI~~ADlIvlgPGSl 183 (310)
T TIGR01826 164 REAVEAIREADLIILGPGSL 183 (310)
T ss_pred HHHHHHHHhCCEEEECCCcC
Confidence 35566778899999999974
No 134
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=35.06 E-value=65 Score=28.15 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=33.9
Q ss_pred HHHHHcCCCcccCCCCCchhhhhcccCcEEEecCC-CCCC--hHHHHHHHHHHHHhcCCCEEEccc
Q 026308 6 NTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGT-LSAN--WLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 6 ~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~-~~~~--~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+++...|+......+.+++. ..++...+++ .|. ++.. ..+.+.++++.+++++..+++|=.
T Consensus 113 ~~~~l~ga~~~~~~~l~~l~-~~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEA 176 (346)
T TIGR03576 113 RSCKLAGAEYFESDELSELK-KIDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDA 176 (346)
T ss_pred HHHHHcCCEEeccCCHHHHh-hCcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECC
Confidence 44555666543223333322 1233455666 343 2211 125567888888899999999865
No 135
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=34.75 E-value=63 Score=25.21 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=26.8
Q ss_pred hcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE
Q 026308 28 TPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 28 ~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv 64 (240)
....|.+++.+|..+....+....+++.+.+.++|++
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPIL 76 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEE
Confidence 6789999997665333325666778888888888874
No 136
>smart00642 Aamy Alpha-amylase domain.
Probab=34.70 E-value=43 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccCCc
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAGAS 73 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~~~ 73 (240)
.+.++.+++.++++|+.|++|-+.-..+
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 4678999999999999999999985543
No 137
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=33.90 E-value=41 Score=29.64 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCchhhhh-cccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 21 IEEIPDFT-PHVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 21 ~~~~~~~~-~~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
++++++.+ ++.+.|++. +..+... ..-++.+.+.++++|+++|+|-.
T Consensus 126 ~~~l~~~i~~~TklV~lesP~NPtg~-~~di~~I~~la~~~gi~vvvD~t 174 (364)
T PRK07269 126 EEELIAAIEEDTDIVYIETPTNPLMV-EFDIEKVAKLAHAKGAKVIVDNT 174 (364)
T ss_pred HHHHHHhcCcCceEEEEECCCCCCCe-eeCHHHHHHHHHHcCCEEEEECC
Confidence 44555555 355666653 2222222 22357788889999999999997
No 138
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=33.89 E-value=41 Score=29.28 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=24.4
Q ss_pred ccCcEEEecC-CCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVNVG-TLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~~G-~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.+.+++... .+.. ...-+.++.+.++++++++++|..-
T Consensus 139 ~~~lv~l~~p~n~tG-~~~~~~~i~~~~~~~~~~vivD~a~ 178 (361)
T cd06452 139 PPALALLTHVDGNYG-NLHDAKKIAKVCHEYGVPLLLNGAY 178 (361)
T ss_pred CceEEEEECCCCCCe-eeccHHHHHHHHHHcCCeEEEECCc
Confidence 3456666421 1222 2233567788888999999999864
No 139
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=33.71 E-value=40 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=26.1
Q ss_pred chhhhhcccCcEEEecCCC-CCC-hHHHHHHHHHHHHhcCCCEE-Ecccc
Q 026308 23 EIPDFTPHVRALYVNVGTL-SAN-WLPSMKAAAQLASQLGKPWV-LDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-~~~-~~~~~~~~~~~~~~~~~~vv-lDp~~ 69 (240)
++.+.+.++|.++++||.+ ++- +.-.+..+.+..++...|+| +-|.+
T Consensus 176 ~~l~AI~~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni~ 225 (300)
T PF01933_consen 176 EALEAIEEADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNIM 225 (300)
T ss_dssp HHHHHHHH-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SSB
T ss_pred HHHHHHHhCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCCC
Confidence 4556778999999999985 433 23233555555666655544 45554
No 140
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=33.56 E-value=46 Score=29.38 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=25.1
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+...|++...........-+.++.+.++++++++++|..-
T Consensus 158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~ 197 (387)
T PRK09331 158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAY 197 (387)
T ss_pred CCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCc
Confidence 3456665411111122334678888899999999999864
No 141
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=33.33 E-value=65 Score=28.70 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=30.9
Q ss_pred CCchhhhhc-ccCcEEEecCCCCCC----hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 21 IEEIPDFTP-HVRALYVNVGTLSAN----WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 21 ~~~~~~~~~-~~d~vvi~~G~~~~~----~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+.+++.+. +.-++++.|-..... ..+.++++.+.++++++.+|+|=+-
T Consensus 173 ~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 226 (406)
T PRK12381 173 LNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ 226 (406)
T ss_pred HHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh
Confidence 344454443 344666654322211 3567788999999999999999764
No 142
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.11 E-value=1.1e+02 Score=28.02 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=56.3
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCC-CEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHH
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGK-PWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALS 102 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~-~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~ 102 (240)
+..+..+.++-+.+.+ ....+.++....++.+++.+. -+|+|..+... .......++.. -..++.|++. |+
T Consensus 147 L~~La~q~~v~~f~~~-~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~--ide~Lm~El~~-Ik~~~~P~E~----ll 218 (451)
T COG0541 147 LKQLAEQVGVPFFGSG-TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH--IDEELMDELKE-IKEVINPDET----LL 218 (451)
T ss_pred HHHHHHHcCCceecCC-CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc--ccHHHHHHHHH-HHhhcCCCeE----EE
Confidence 3445567777776543 233356778888999988764 47789988432 11122223322 2245556532 11
Q ss_pred cCCCCCCcCCCCCCChHHHHHHHHHHHHhcCCE-EEEe
Q 026308 103 RASVGPTKGVDSSHESMDAMEAARCLAEASGAI-VAVS 139 (240)
Q Consensus 103 g~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~-Vvit 139 (240)
=. |+ ..-.++...|+.+.+..+.. ||+|
T Consensus 219 Vv--------Da-m~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 219 VV--------DA-MIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred EE--------ec-ccchHHHHHHHHHhhhcCCceEEEE
Confidence 11 11 22356778888998887654 6666
No 143
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=33.10 E-value=1e+02 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccc
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+.++++.+.++++++++|.|..-
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 466788889999999999999983
No 144
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=33.09 E-value=61 Score=29.05 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCEEEccccc
Q 026308 50 KAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 50 ~~~~~~~~~~~~~vvlDp~~~ 70 (240)
+++++.++++++|+++|....
T Consensus 177 ~~l~~ia~~~~lpvivD~aSg 197 (395)
T COG1921 177 EELVEIAHEKGLPVIVDLASG 197 (395)
T ss_pred HHHHHHHHHcCCCEEEecCCc
Confidence 568888999999999998763
No 145
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=32.79 E-value=50 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCCchhhhhccc----CcEEE-----ecCCCCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 19 HTIEEIPDFTPHV----RALYV-----NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 19 ~~~~~~~~~~~~~----d~vvi-----~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
++++.+++.+++. -+|++ +.|++.+. .+.++.+.+.++++|..+|+|=++-
T Consensus 185 ND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~-~~Fl~~Lr~lt~e~G~lLI~DEViT 244 (432)
T COG0001 185 NDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPE-PGFLEGLRELTEEHGALLIFDEVIT 244 (432)
T ss_pred CCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCC-HHHHHHHHHHHHHcCcEEEEecchh
Confidence 3666677777654 24444 45664333 3677888888999999999999873
No 146
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.52 E-value=52 Score=27.64 Aligned_cols=77 Identities=18% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCC--CCcCCC----CCCChHHHHH
Q 026308 50 KAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVG--PTKGVD----SSHESMDAME 123 (240)
Q Consensus 50 ~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~--~~~~~~----~~~~~~~~~~ 123 (240)
+.+.+..++.++.+++|+.= +.+.-|+=|..|+++.+|.++- +..+.+ .-....++.+
T Consensus 56 e~l~~~l~e~~i~llIDATH----------------PyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~e 119 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATH----------------PYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEE 119 (257)
T ss_pred HHHHHHHHHcCCCEEEECCC----------------hHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHH
Confidence 44556678999999999964 1233455688888888887642 001111 0012235555
Q ss_pred HHHHHHHhcCCEEEEe-cCcc
Q 026308 124 AARCLAEASGAIVAVS-GAVD 143 (240)
Q Consensus 124 ~a~~l~~~~~~~Vvit-G~~~ 143 (240)
+++.+ ++.+..|++| |...
T Consensus 120 a~~~~-~~~~~rVflt~G~~~ 139 (257)
T COG2099 120 AAEAA-KQLGRRVFLTTGRQN 139 (257)
T ss_pred HHHHH-hccCCcEEEecCccc
Confidence 55544 3444556666 8764
No 147
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=32.36 E-value=46 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=29.5
Q ss_pred Cchhhhhc-ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 22 EEIPDFTP-HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 22 ~~~~~~~~-~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+++++.+. +..++++....++....+.++++.+.++++++.+|+|..
T Consensus 150 ~~l~~~i~~~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~ 197 (398)
T cd00613 150 EALKEEVSEEVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGD 197 (398)
T ss_pred HHHHHhcCCCeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEec
Confidence 34444443 345566643323333334568888999999999999974
No 148
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=32.05 E-value=39 Score=29.27 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=14.8
Q ss_pred chhhhhcccCcEEEecCCC
Q 026308 23 EIPDFTPHVRALYVNVGTL 41 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~ 41 (240)
++.+.+.++|.++++||.+
T Consensus 167 ~~l~AI~~ADlIvlgPGSl 185 (309)
T cd07044 167 EVLEAIEKADNIVIGPGSL 185 (309)
T ss_pred HHHHHHHhCCEEEECCCcC
Confidence 4556778889999998874
No 149
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=31.89 E-value=59 Score=28.53 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHcCCCcccCC-----CCCchhhhhc-ccCcEE-Ee-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 6 NTLLSAGASPAMLH-----TIEEIPDFTP-HVRALY-VN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 6 ~~~~~~g~~~~~~~-----~~~~~~~~~~-~~d~vv-i~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++...|+.|+..+ +++.+++.+. +..+++ +. +..+... ..-++++.+.++++|+++++|..-
T Consensus 118 ~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~-~~~~~~i~~~a~~~gi~vivD~a~ 188 (363)
T TIGR01437 118 TMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKS-MLSVEDAAQVAQEHNLPLIVDAAA 188 (363)
T ss_pred HHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCC-cCCHHHHHHHHHHcCCeEEEECCC
Confidence 45566788885442 3445555553 344444 22 1222111 112467788899999999999975
No 150
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=31.87 E-value=68 Score=28.46 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=30.6
Q ss_pred CCCchhhhhc-ccCcEEEecCCCCC----ChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVNVGTLSA----NWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~~G~~~~----~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.+++++.+. +.-++++.+..+.. ...+.++++.+.|+++++.+|+|=+-
T Consensus 173 d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 227 (403)
T PRK05093 173 DLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQ 227 (403)
T ss_pred CHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 3444554443 33456665332211 13467788999999999999998763
No 151
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=31.83 E-value=40 Score=29.18 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.4
Q ss_pred chhhhhcccCcEEEecCCC
Q 026308 23 EIPDFTPHVRALYVNVGTL 41 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~ 41 (240)
++.+.+.++|.++++||.+
T Consensus 168 ~a~~AI~~AD~Iv~gPGSl 186 (308)
T cd07187 168 EALEAIEEADLIVYGPGSL 186 (308)
T ss_pred HHHHHHHhCCEEEECCCcc
Confidence 5567778999999999975
No 152
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=31.80 E-value=31 Score=30.32 Aligned_cols=48 Identities=10% Similarity=0.134 Sum_probs=32.7
Q ss_pred chhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 23 EIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
.+.+++..+|.+++. .|+ +-......-+.++..|++.++|+++=.-+.
T Consensus 232 nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~L 284 (348)
T PF00224_consen 232 NLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQML 284 (348)
T ss_dssp THHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSS
T ss_pred hHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhH
Confidence 456778889999984 333 333333344678899999999999966653
No 153
>PLN02775 Probable dihydrodipicolinate reductase
Probab=31.72 E-value=2.6e+02 Score=23.95 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=38.2
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc--cCCeEEcCCHH
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ--LKPTVIRGNAS 96 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~--~~~~vitPN~~ 96 (240)
.+|.|+|..-.+ +.+...++.+.++++|+|+=..+ +..+...++.. .-+.++.||..
T Consensus 79 ~~~~VvIDFT~P-----~a~~~~~~~~~~~g~~~VvGTTG-----~~~e~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 79 YPNLIVVDYTLP-----DAVNDNAELYCKNGLPFVMGTTG-----GDRDRLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred CCCEEEEECCCh-----HHHHHHHHHHHHCCCCEEEECCC-----CCHHHHHHHHhcCCccEEEECccc
Confidence 467677765433 55677788899999999987776 43333333333 24789999954
No 154
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=31.60 E-value=34 Score=28.03 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=36.2
Q ss_pred ccCcEEEecCCCCC-ChHHHHHHHHHHHHhcCCCEEEcccccCCcccchH--HHHHHhc-cCCeEEcCCHHHHHHHHc
Q 026308 30 HVRALYVNVGTLSA-NWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLN--ACLELVQ-LKPTVIRGNASEIIALSR 103 (240)
Q Consensus 30 ~~d~vvi~~G~~~~-~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~--~~~~~~~-~~~~vitPN~~E~~~L~g 103 (240)
..|++++| |+..- ...+.+..+++..++ ..|+++=|..........+ +.+.+++ ..++.|+..+.|+..+.+
T Consensus 25 gtdai~vG-GS~~v~~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~ 100 (219)
T cd02812 25 GTDAIMVG-GSDGVSSTLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVG 100 (219)
T ss_pred CCCEEEEC-CccchhhhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhc
Confidence 36999997 65321 334434444444433 5999998866443211111 1223333 245555555555555444
No 155
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=31.51 E-value=46 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccCCcc
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAGASG 74 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~~~~ 74 (240)
.+.++++++.++++|+.||+|-+.-+.+.
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred hhhhhhhhhccccccceEEEeeecccccc
Confidence 57789999999999999999999865443
No 156
>PRK08354 putative aminotransferase; Provisional
Probab=31.44 E-value=1.1e+02 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCCEEEccc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+.++++++.+++++..+|+|-.
T Consensus 137 ~~l~~l~~~a~~~~~~li~De~ 158 (311)
T PRK08354 137 KELKPLLDAVEDRNALLILDEA 158 (311)
T ss_pred HHHHHHHHHhhhcCcEEEEeCc
Confidence 3445566666666666666654
No 157
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=31.39 E-value=44 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.++...++++|+||...|++
T Consensus 69 ~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 69 LAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred HHHHHHHHHHcCCcEEEeCCC
Confidence 567777888888888888876
No 158
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=31.39 E-value=80 Score=26.59 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=37.1
Q ss_pred cEEEecCC-C--CC--ChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHh-ccCCeEEcCCH
Q 026308 33 ALYVNVGT-L--SA--NWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELV-QLKPTVIRGNA 95 (240)
Q Consensus 33 ~vvi~~G~-~--~~--~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~-~~~~~vitPN~ 95 (240)
+..+++|+ + .. .-+..++++++.+++.+.+|++|..-.+-+..-....+.++ ...+|.+|-|.
T Consensus 54 v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~ 122 (261)
T TIGR02127 54 AAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP 122 (261)
T ss_pred ceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC
Confidence 45678887 2 21 12445666778889999999999976543221112233344 23467777773
No 159
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.22 E-value=52 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE-Ecccc
Q 026308 21 IEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV-LDPVA 69 (240)
Q Consensus 21 ~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv-lDp~~ 69 (240)
..++.+.+...|++++||=+. -.+.++-+.+..+++||. +|+.-
T Consensus 39 ~~e~~~~~~~~DvvLlGPQv~-----y~~~~~~~~~~~~giPV~vI~~~d 83 (102)
T COG1440 39 ETELSEYIDNADVVLLGPQVR-----YMLKQLKEAAEEKGIPVEVIDMLD 83 (102)
T ss_pred hhHHHHhhhcCCEEEEChHHH-----HHHHHHHHHhcccCCCeEEeCHHH
Confidence 345667778999999875321 223456666777888874 57654
No 160
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=30.77 E-value=79 Score=24.97 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=35.8
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc--cCCe-EEcCCHHH
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ--LKPT-VIRGNASE 97 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~--~~~~-vitPN~~E 97 (240)
.++++++-.|-+. .+..+++.++++|+.+++.-+.+...+.+. ..-+++. .++| +||-+..=
T Consensus 19 ~~~~vfLl~g~I~-----~l~~~v~~~~~~gK~vfVHiDli~Gl~~D~-~~i~~L~~~~~~dGIISTk~~~ 83 (175)
T PF04309_consen 19 DVEVVFLLTGDIG-----NLKDIVKRLKAAGKKVFVHIDLIEGLSRDE-AGIEYLKEYGKPDGIISTKSNL 83 (175)
T ss_dssp SSSEEEE-SEECC-----CHHHHHHHHHHTT-EEEEECCGEETB-SSH-HHHHHHHHTT--SEEEESSHHH
T ss_pred CCCEEEEEcCcHH-----HHHHHHHHHHHcCCEEEEEehhcCCCCCCH-HHHHHHHHcCCCcEEEeCCHHH
Confidence 6777777555442 246778889999999999888876443332 2233443 3455 66665443
No 161
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.70 E-value=3.2e+02 Score=22.88 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEc------CCHHHHHHH--HcCCCCCCcCCCCCCC
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIR------GNASEIIAL--SRASVGPTKGVDSSHE 117 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vit------PN~~E~~~L--~g~~~~~~~~~~~~~~ 117 (240)
.+.+..+.+.+++.|++++-|+.-.. .+..+.+ .+++++ =|..=+..+ +|.++...+|.- .+
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~-------~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~--~t 134 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSER-------QLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLM--AT 134 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHH-------HHHHHHh-cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCC--CC
Confidence 45677777888888888888775411 1111111 233321 122212222 233321122211 46
Q ss_pred hHHHHHHHHHHHHhcCCEEEEe
Q 026308 118 SMDAMEAARCLAEASGAIVAVS 139 (240)
Q Consensus 118 ~~~~~~~a~~l~~~~~~~Vvit 139 (240)
.++...+++.+.+.++..|++.
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 7888888888887777666665
No 162
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.66 E-value=2.5e+02 Score=23.37 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=37.7
Q ss_pred CchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHH---HHHhccCCeEEcCCH
Q 026308 22 EEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNAC---LELVQLKPTVIRGNA 95 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~---~~~~~~~~~vitPN~ 95 (240)
..+.++++.+|+++.-+ + + +.....+..+.+.|+++|+=+.+ +..+.. .+.-+..+-++.||.
T Consensus 52 ~dl~~ll~~~DvVid~t--~-p---~~~~~~~~~al~~G~~vvigttG-----~s~~~~~~l~~aa~~~~v~~s~n~ 117 (257)
T PRK00048 52 DDLEAVLADADVLIDFT--T-P---EATLENLEFALEHGKPLVIGTTG-----FTEEQLAELEEAAKKIPVVIAPNF 117 (257)
T ss_pred CCHHHhccCCCEEEECC--C-H---HHHHHHHHHHHHcCCCEEEECCC-----CCHHHHHHHHHHhcCCCEEEECcc
Confidence 34555566788777432 2 1 33466777788899999987654 322222 222223578899994
No 163
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=30.47 E-value=74 Score=28.39 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.5
Q ss_pred chhhhhcccCcEEEecCCCCCC--hHHHHHHHHHHHHhcCCCEEEc
Q 026308 23 EIPDFTPHVRALYVNVGTLSAN--WLPSMKAAAQLASQLGKPWVLD 66 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~--~~~~~~~~~~~~~~~~~~vvlD 66 (240)
.+++.++.+|.|+.+-|-.+.+ .=+....+.+.++++++|+|+=
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai 321 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAI 321 (375)
T ss_pred CHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEE
Confidence 5678889999999887764332 1234467778899999999873
No 164
>PLN02721 threonine aldolase
Probab=30.39 E-value=63 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCCEEEccc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+.++++.+.++++|+++++|..
T Consensus 158 ~~l~~l~~l~~~~g~~livD~a 179 (353)
T PLN02721 158 EYTDKVGELAKRHGLKLHIDGA 179 (353)
T ss_pred HHHHHHHHHHHHcCCEEEEEch
Confidence 4467888888899999999874
No 165
>PLN02623 pyruvate kinase
Probab=29.99 E-value=67 Score=30.39 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=33.2
Q ss_pred CchhhhhcccCcEEEecCCCC-----CChHHHHHHHHHHHHhcCCCEEE
Q 026308 22 EEIPDFTPHVRALYVNVGTLS-----ANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~~~-----~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
+.+.++++.+|.+++++|-+. ++.....+++++.+++.|+|+++
T Consensus 333 eNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 333 PNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred HhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEE
Confidence 345677789999999876431 33345678899999999999985
No 166
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=29.92 E-value=52 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=36.8
Q ss_pred CCCchhhhhcccCc---EEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccC
Q 026308 20 TIEEIPDFTPHVRA---LYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAG 71 (240)
Q Consensus 20 ~~~~~~~~~~~~d~---vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~ 71 (240)
+++.+++.+.+... ||-..|...-..+|-++.+.+.+.++++++-||+...+
T Consensus 194 d~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG 248 (460)
T COG0076 194 DVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGG 248 (460)
T ss_pred CHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccc
Confidence 45566666665444 55456775444556678888899999999999998744
No 167
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.89 E-value=1.4e+02 Score=20.10 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=36.8
Q ss_pred cEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHHHHH
Q 026308 33 ALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASEIIA 100 (240)
Q Consensus 33 ~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E~~~ 100 (240)
++++..|.-++...+....+.+.+++.|+.+.+|..... +.. ..+..-. .-|.+|.....|.+.
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~---~~k-~~~~a~~~g~p~~iiiG~~e~~~ 66 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKS---LGK-QIKYADKLGIPFIIIIGEKELEN 66 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSST---HHH-HHHHHHHTTESEEEEEEHHHHHT
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCc---hhH-HHHHHhhcCCeEEEEECchhHhC
Confidence 455544432223345567788888999999999984411 211 1122221 357888888777753
No 168
>PRK06186 hypothetical protein; Validated
Probab=29.67 E-value=1e+02 Score=25.50 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=27.2
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv 64 (240)
.++.+|.+++-+|+.... ++-...+++.++++++|++
T Consensus 50 ~l~~~dgilvpgGfg~rg-~~Gki~ai~~Are~~iP~L 86 (229)
T PRK06186 50 DLAGFDGIWCVPGSPYRN-DDGALTAIRFARENGIPFL 86 (229)
T ss_pred hHhhCCeeEeCCCCCccc-HhHHHHHHHHHHHcCCCeE
Confidence 577899998877764433 3444567899999999974
No 169
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.59 E-value=41 Score=28.09 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCC-CcC-C-----CCCCChHHHH
Q 026308 50 KAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGP-TKG-V-----DSSHESMDAM 122 (240)
Q Consensus 50 ~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~-~~~-~-----~~~~~~~~~~ 122 (240)
..+.+.++++++..|+|+.=. | +..++=|..+++.-+|.++-. .+. . +.-...++..
T Consensus 56 ~~l~~~l~~~~i~~vIDATHP----f------------A~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~ 119 (249)
T PF02571_consen 56 EGLAEFLRENGIDAVIDATHP----F------------AAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYE 119 (249)
T ss_pred HHHHHHHHhCCCcEEEECCCc----h------------HHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHH
Confidence 345566788999999999641 2 223344555555555544210 000 0 0001124556
Q ss_pred HHHHHHHHhcCCEEEEe-cCcc
Q 026308 123 EAARCLAEASGAIVAVS-GAVD 143 (240)
Q Consensus 123 ~~a~~l~~~~~~~Vvit-G~~~ 143 (240)
++++.+.+..+..|++| |...
T Consensus 120 eA~~~l~~~~~~~iflttGsk~ 141 (249)
T PF02571_consen 120 EAAELLKELGGGRIFLTTGSKN 141 (249)
T ss_pred HHHHHHhhcCCCCEEEeCchhh
Confidence 66666655554556666 8753
No 170
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=29.49 E-value=87 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=33.6
Q ss_pred cCCCCCchhhhhcccC--cEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 17 MLHTIEEIPDFTPHVR--ALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 17 ~~~~~~~~~~~~~~~d--~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.-.++++.++++++. ++++|.|..++.. .+.+.+.+.+.++|++.-+.+
T Consensus 13 ~~~~p~~aa~lLk~AKRPvIivG~ga~~~~a---~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 13 TLVSPKLVAMMIKRAKRPLLIVGPENLEDEE---KELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred cccCHHHHHHHHHcCCCcEEEECCCcCcccH---HHHHHHHHHHHCCCEEEcCcc
Confidence 4456777777777664 5666777654433 356666677889999987754
No 171
>PRK05939 hypothetical protein; Provisional
Probab=29.43 E-value=1.3e+02 Score=26.90 Aligned_cols=62 Identities=16% Similarity=0.342 Sum_probs=36.8
Q ss_pred HHHHcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 7 TLLSAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 7 ~~~~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+...|..+... .+.+++++.+. +...|++. +..+... ..-++++.+.++++++++|+|..-
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~-v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQ-VADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCC-HHhHHHHHHHHHHcCCEEEEECCc
Confidence 344456665332 34556665553 34556553 1222222 344678889999999999999853
No 172
>PLN02765 pyruvate kinase
Probab=29.26 E-value=61 Score=30.26 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=34.2
Q ss_pred CCchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEEcccccC
Q 026308 21 IEEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVLDPVAAG 71 (240)
Q Consensus 21 ~~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~ 71 (240)
++.+.++++.+|.+++. .|+ +-+.....-+++++.|++.++|+|. .-+..
T Consensus 262 v~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLe 316 (526)
T PLN02765 262 LTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVD 316 (526)
T ss_pred HHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhh
Confidence 33467788899999984 333 3222233336788999999999997 65543
No 173
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=28.95 E-value=80 Score=28.66 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=36.8
Q ss_pred hhHHHHHcCCCcccCC--------CCCchhhhh-cccCcEEEe--cCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 4 VANTLLSAGASPAMLH--------TIEEIPDFT-PHVRALYVN--VGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~--------~~~~~~~~~-~~~d~vvi~--~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
.++++...|+.|+..+ +++.+++.+ ++..+|++. .|.+ .-+..+.+.++++++++|.|..
T Consensus 124 ~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~~G~p-----~dl~~I~~la~~~gi~vIeDaa 194 (438)
T PRK15407 124 TVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHTLGNP-----FDLAAVKAFCDKHNLWLIEDNC 194 (438)
T ss_pred HHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCCCCCh-----hhHHHHHHHHHHCCCEEEEECc
Confidence 3566777888874432 223344434 244566653 3432 2347777889999999999984
No 174
>PRK09932 glycerate kinase II; Provisional
Probab=28.57 E-value=79 Score=28.26 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=32.5
Q ss_pred chhhhhcccCcEEEecCCCCCCh--HHHHHHHHHHHHhcCCCEEEcc
Q 026308 23 EIPDFTPHVRALYVNVGTLSANW--LPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~~--~~~~~~~~~~~~~~~~~vvlDp 67 (240)
.+++.++.+|.|+.|-|-.+.++ =+....+.+.++++++|+|+=.
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~ 323 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIA 323 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEe
Confidence 56788899999998877643331 1334567788999999998733
No 175
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=28.56 E-value=49 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++++.+.++++++++|+|..-
T Consensus 151 ~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 151 LPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred HHHHHHHHHHcCCEEEEEccc
Confidence 577888899999999999874
No 176
>PRK09776 putative diguanylate cyclase; Provisional
Probab=28.14 E-value=3.4e+02 Score=27.42 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHH
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAAR 126 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~ 126 (240)
+.+...++.+++.|+.+.+|=.+.+.+.+ ..+....+++||-+..-...+...+ ....+.+...
T Consensus 974 ~~~~~~~~~l~~~G~~~~lddfg~g~~~~-----~~l~~~~~d~iKid~~~~~~~~~~~-----------~~~~~~~~i~ 1037 (1092)
T PRK09776 974 ESASRLVQKLRLAGCRVVLSDFGRGLSSF-----NYLKAFMADYLKLDGELVANLHGNL-----------MDEMLISIIQ 1037 (1092)
T ss_pred HHHHHHHHHHHHCCcEEEEcCCCCCchHH-----HHHHhCCCCEEEECHHHHHhHhcCh-----------hhHHHHHHHH
Confidence 45667788899999999999877543222 1222246899999988777765432 2245566667
Q ss_pred HHHHhcCCEEEEecCc
Q 026308 127 CLAEASGAIVAVSGAV 142 (240)
Q Consensus 127 ~l~~~~~~~VvitG~~ 142 (240)
.+++..+..||..|-.
T Consensus 1038 ~~~~~~~~~~iaegVE 1053 (1092)
T PRK09776 1038 GHAQRLGMKTIAGPVE 1053 (1092)
T ss_pred HHHHHcCCcEEecccC
Confidence 7888888889999863
No 177
>PRK10342 glycerate kinase I; Provisional
Probab=28.07 E-value=81 Score=28.19 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=32.5
Q ss_pred chhhhhcccCcEEEecCCCCCCh--HHHHHHHHHHHHhcCCCEEEcc
Q 026308 23 EIPDFTPHVRALYVNVGTLSANW--LPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~~--~~~~~~~~~~~~~~~~~vvlDp 67 (240)
.+.+.++.+|.|+.+=|-.+.++ =+....+.+.++++++|+|+=.
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~ 323 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIA 323 (381)
T ss_pred CHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEe
Confidence 56788899999998877643321 2334567788999999998733
No 178
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=28.06 E-value=96 Score=27.14 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++++.+.++++++++|+|-.-
T Consensus 189 l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 189 LDEICDLADKYDALVMVDECH 209 (393)
T ss_pred HHHHHHHHHHcCCEEEEECCc
Confidence 577888899999999999873
No 179
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=27.92 E-value=96 Score=24.63 Aligned_cols=75 Identities=25% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHH
Q 026308 51 AAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAE 130 (240)
Q Consensus 51 ~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~ 130 (240)
..++.+++.|+.+.+|-.+.+...+ ..+....++.|+-+..-...+. . .......+....+++
T Consensus 138 ~~l~~l~~~G~~i~ld~~g~~~~~~-----~~l~~l~~~~ikld~~~~~~~~-~-----------~~~~~~l~~l~~~~~ 200 (236)
T PF00563_consen 138 ENLRRLRSLGFRIALDDFGSGSSSL-----EYLASLPPDYIKLDGSLVRDLS-D-----------EEAQSLLQSLINLAK 200 (236)
T ss_dssp HHHHHHHHCT-EEEEEEETSTCGCH-----HHHHHHCGSEEEEEHHGHTTTT-S-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCceeEeeeccCCcchh-----hhhhhcccccceeecccccccc-h-----------hhHHHHHHHHHHHhh
Confidence 5666788999999999876443222 1222236788888765543332 1 122345555666777
Q ss_pred hcCCEEEEecCc
Q 026308 131 ASGAIVAVSGAV 142 (240)
Q Consensus 131 ~~~~~VvitG~~ 142 (240)
+.+..|+++|-.
T Consensus 201 ~~~~~via~gVe 212 (236)
T PF00563_consen 201 SLGIKVIAEGVE 212 (236)
T ss_dssp HTT-EEEEECE-
T ss_pred ccccccceeecC
Confidence 778889999853
No 180
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.57 E-value=96 Score=28.19 Aligned_cols=64 Identities=22% Similarity=0.385 Sum_probs=38.4
Q ss_pred hHHHHHcCCCcccCC---CCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 5 ANTLLSAGASPAMLH---TIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 5 a~~~~~~g~~~~~~~---~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+.+...|..+...+ +++++++.+. +...|++. +|.+.-...+ +..+.+.++++|+++|+|..-
T Consensus 118 ~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D-i~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 118 GVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMNVLN-FKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCccccccC-HHHHHHHHHHcCCEEEEECCC
Confidence 334566788774332 4456666654 34555543 3323211112 577888899999999999863
No 181
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=27.56 E-value=1.1e+02 Score=21.31 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=19.5
Q ss_pred hhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE
Q 026308 26 DFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 26 ~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv 64 (240)
.++..||.+++=+|+-.+.-. .++ ...+++.|++|+
T Consensus 55 ~~L~~cD~i~~l~gWe~S~GA-~~E--~~~A~~lGl~V~ 90 (92)
T PF14359_consen 55 AMLSDCDAIYMLPGWENSRGA-RLE--HELAKKLGLPVI 90 (92)
T ss_pred HHHHhCCEEEEcCCcccCcch-HHH--HHHHHHCCCeEe
Confidence 345577888776776322211 112 244667777665
No 182
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=27.56 E-value=92 Score=27.87 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=34.8
Q ss_pred HcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 10 SAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 10 ~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..|..+... .+++++++.+. +.+.|++. +..+..... -+.++.+.++++++++|+|-.-
T Consensus 132 ~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g~~vivD~a~ 194 (403)
T PRK07810 132 RWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLV-DIAAVSELAHAAGAKVVLDNVF 194 (403)
T ss_pred HcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCC
Confidence 456666333 34455665553 45566653 222222222 2577888899999999999864
No 183
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.22 E-value=74 Score=29.34 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCchhhhhcccCcEEEe---cCC--CCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 21 IEEIPDFTPHVRALYVN---VGT--LSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 21 ~~~~~~~~~~~d~vvi~---~G~--~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
++.+.++++.+|.+.+. .|. +.++..-.=+.+++.|++.|+|+|.=.-|.
T Consensus 230 v~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQML 284 (477)
T COG0469 230 VDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQML 284 (477)
T ss_pred HhHHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccH
Confidence 34567788899999983 343 433333333678899999999999855543
No 184
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=27.19 E-value=1.3e+02 Score=26.21 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=25.8
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+..++++. +..++.. ..+.++++++.++++++.+|.|-.-
T Consensus 148 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y 190 (364)
T PRK07865 148 RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECY 190 (364)
T ss_pred cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 45666663 3323222 2355678888899999999988753
No 185
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=27.14 E-value=57 Score=28.09 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=25.7
Q ss_pred chhhhhcccCcEEEecCCC-CCC-hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 23 EIPDFTPHVRALYVNVGTL-SAN-WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~-~~~-~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++.+.++.+|.|+++||.+ .+- ++-.+..+.+.+++ ...|-+-|.+
T Consensus 175 eal~AI~~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~-a~vV~Vspii 222 (297)
T TIGR01819 175 KVLEAIRKEDNILIGPSNPITSIGPILSLPGIREALRD-KKVVAVSPIV 222 (297)
T ss_pred HHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHc-CCEEEEccCc
Confidence 4556778899999999974 221 22223444444444 2233355554
No 186
>PRK07671 cystathionine beta-lyase; Provisional
Probab=26.91 E-value=85 Score=27.76 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=34.0
Q ss_pred HcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 10 SAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 10 ~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..|...... .+++++++.+. +...|++. +..+... ..-++++.+.++++++++|+|-.-
T Consensus 111 ~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~-~~dl~~I~~la~~~g~~lvvD~a~ 173 (377)
T PRK07671 111 RFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLK-ITDIKKISTIAKEKGLLTIVDNTF 173 (377)
T ss_pred cCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCc-ccCHHHHHHHHHHcCCEEEEECCC
Confidence 346655322 35556666553 45566653 2222111 223567778889999999999763
No 187
>PLN02509 cystathionine beta-lyase
Probab=26.81 E-value=1.4e+02 Score=27.38 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=35.6
Q ss_pred HHcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 9 LSAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 9 ~~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
...|...... .+.+++++.+. +...|++. +..+.. ...-++++.+.++++++++|+|-.-
T Consensus 193 ~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG-~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 193 PRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQ-QISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred HHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3456655332 33445555544 34455553 222333 3455688889999999999999863
No 188
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=26.69 E-value=90 Score=27.76 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++.+++.+. +...|++. +..+..... -++++.+.++++++++|+|-.-
T Consensus 133 d~e~l~~~i~~~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 133 IPEEVKAHIKDNTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred CHHHHHHhhccCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCC
Confidence 4555555543 34555543 322322222 2577888889999999999864
No 189
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=26.59 E-value=94 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=30.4
Q ss_pred CCCchhhhhc-ccCcEEEecCCCCCC----hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVNVGTLSAN----WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~~G~~~~~----~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++.+++.+. +..++++.+-..... ..+.++++.+.++++|+.+|+|=+-
T Consensus 168 d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 222 (397)
T TIGR03246 168 DLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ 222 (397)
T ss_pred CHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 3445555553 344555542111111 2467788888999999999999774
No 190
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=26.53 E-value=68 Score=27.75 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCCEEEccc
Q 026308 49 MKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~ 68 (240)
++++.+.++++++.+++|..
T Consensus 170 l~~I~~l~~~~g~~livD~a 189 (371)
T PRK13520 170 IPELSKIALENGIFLHVDAA 189 (371)
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 56777778889999999985
No 191
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=26.49 E-value=54 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCCCEEEcccc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+-++++.+.++++++++++|..-
T Consensus 165 ~~~~~i~~~~~~~~~~l~vD~a~ 187 (345)
T cd06450 165 DPLEEIADLAEKYDLWLHVDAAY 187 (345)
T ss_pred CCHHHHHHHHHHhCCeEEEechh
Confidence 34577888899999999999863
No 192
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=26.34 E-value=56 Score=28.79 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=23.7
Q ss_pred EecCCCCCChHHHHHHHHHHHHhcCCCEEE
Q 026308 36 VNVGTLSANWLPSMKAAAQLASQLGKPWVL 65 (240)
Q Consensus 36 i~~G~~~~~~~~~~~~~~~~~~~~~~~vvl 65 (240)
++...+++.+...++++++.+++.|+|+++
T Consensus 241 l~~f~~s~~q~~F~e~~L~~ake~~I~~vl 270 (345)
T PF07611_consen 241 LSSFTFSETQFFFLEKFLKLAKENGIPVVL 270 (345)
T ss_pred hcCCCCChhHHHHHHHHHHHHHHcCCcEEE
Confidence 344446777888899999999999998765
No 193
>PRK07681 aspartate aminotransferase; Provisional
Probab=26.32 E-value=91 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=26.4
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+...+++. +.-|+.. ..+.++++++.++++++.+|.|-.-
T Consensus 166 ~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y 208 (399)
T PRK07681 166 KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAY 208 (399)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccc
Confidence 56677765 3433322 2345678888899999989887643
No 194
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=26.18 E-value=2.3e+02 Score=25.53 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=42.1
Q ss_pred CCCCchhhhhcccC-cEEE-----ecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEc
Q 026308 19 HTIEEIPDFTPHVR-ALYV-----NVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIR 92 (240)
Q Consensus 19 ~~~~~~~~~~~~~d-~vvi-----~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vit 92 (240)
.+++.++..+..-- +|++ ..|+... ..+.+..+-+.|+++|+.+|+|=+=-+.+..-..+.-+...-.||++|
T Consensus 172 nDi~al~~ai~~~taAvivEPIQGEgGV~~~-~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t 250 (404)
T COG4992 172 NDIEALEAAIDEDTAAVIVEPIQGEGGVIPA-PPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT 250 (404)
T ss_pred CCHHHHHHHhccCeEEEEEecccCCCCCCCC-CHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE
Confidence 46677777776522 3333 2455322 247778888889999999999987533221111111222223577776
Q ss_pred C
Q 026308 93 G 93 (240)
Q Consensus 93 P 93 (240)
-
T Consensus 251 l 251 (404)
T COG4992 251 L 251 (404)
T ss_pred e
Confidence 3
No 195
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.04 E-value=91 Score=22.06 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=25.1
Q ss_pred chhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE-Ecccc
Q 026308 23 EIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV-LDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv-lDp~~ 69 (240)
++.+..+.+|+++++|=+ .-.+.++-+.+...++|+. +||..
T Consensus 40 e~~~~~~~~Dvill~PQv-----~~~~~~i~~~~~~~~ipv~~I~~~~ 82 (99)
T cd05565 40 SHYDMIPDYDLVILAPQM-----ASYYDELKKDTDRLGIKLVTTTGKQ 82 (99)
T ss_pred HHHHhccCCCEEEEcChH-----HHHHHHHHHHhhhcCCCEEEeCHHH
Confidence 445566678888865432 1233555566677788865 46654
No 196
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=26.01 E-value=1.8e+02 Score=24.24 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=35.9
Q ss_pred HHHHHcCCCcccCCC----CCchhhhhcccCcEEEecC-C-CCC---------C----hH-HHHHHHHHHHHhcCCCEE
Q 026308 6 NTLLSAGASPAMLHT----IEEIPDFTPHVRALYVNVG-T-LSA---------N----WL-PSMKAAAQLASQLGKPWV 64 (240)
Q Consensus 6 ~~~~~~g~~~~~~~~----~~~~~~~~~~~d~vvi~~G-~-~~~---------~----~~-~~~~~~~~~~~~~~~~vv 64 (240)
.++..+|+.|+..-. .+.+.+.+..+|.+++..| . .++ . .. ..-..+++.+.+.++|++
T Consensus 33 ~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PIL 111 (254)
T PRK11366 33 NAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIF 111 (254)
T ss_pred HHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEE
Confidence 678889999965532 2335667788999998544 2 210 0 11 122456677777788774
No 197
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=25.99 E-value=1.5e+02 Score=25.38 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCCchhhhhcccCcEEE-ecCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTPHVRALYV-NVGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~~~d~vvi-~~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.+++.+.+++.+.+++ .+..+... ..+.+.++++.++++++++|+|-.-
T Consensus 115 d~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y 167 (330)
T TIGR01140 115 DLDRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAF 167 (330)
T ss_pred CHHHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcc
Confidence 55566666666665555 22212111 2455678888888899999999864
No 198
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.99 E-value=92 Score=28.26 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=34.8
Q ss_pred cCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 11 AGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 11 ~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.|..+... ++++++++.+. +...|++. ++.+... +.-++.+.+.++++++++|+|..-
T Consensus 127 ~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g~-v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 127 FGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLE-VLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccCc-ccCHHHHHHHHHHcCCEEEEECCC
Confidence 57666333 35666666664 34555543 2222111 122477888899999999999864
No 199
>PRK08064 cystathionine beta-lyase; Provisional
Probab=25.82 E-value=1.2e+02 Score=26.99 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=33.7
Q ss_pred HcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 10 SAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 10 ~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
..|...... .+.+.+++.+. +.+.|++. +..+.... .-+..+.+.++++++++|+|..
T Consensus 115 ~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~-~dl~~I~~la~~~g~~vvvD~a 176 (390)
T PRK08064 115 RFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKV-TDIRGVVKLAKAIGCLTFVDNT 176 (390)
T ss_pred HcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEe-ccHHHHHHHHHHcCCEEEEECC
Confidence 356555222 34455555553 45666653 22122222 2356778889999999999975
No 200
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.80 E-value=91 Score=21.71 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=24.4
Q ss_pred hhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEE-Ecccc
Q 026308 24 IPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWV-LDPVA 69 (240)
Q Consensus 24 ~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vv-lDp~~ 69 (240)
+.+....+|+++++|-+. ..+.++-+.+.+.++|++ +||..
T Consensus 44 ~~~~~~~~Dvill~pqi~-----~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 44 AGEKLDDADVVLLAPQVA-----YMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHhhcCCCCEEEECchHH-----HHHHHHHHHhhhcCCCEEEeChhh
Confidence 444556778888764432 234555555667788875 46654
No 201
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=25.67 E-value=90 Score=26.52 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCCEEEcc
Q 026308 47 PSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp 67 (240)
+.+.++++.++++++++++|.
T Consensus 146 ~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 146 DELKAISALAKENGLPLHLDG 166 (338)
T ss_pred HHHHHHHHHHHHcCCeEeech
Confidence 444556666666666666664
No 202
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=25.65 E-value=88 Score=27.97 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 19 HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 19 ~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++..++ +..+|.+. .|-|.-. .--++.+.+.++++++|+|||--.
T Consensus 135 ~d~~~~~~aI~~nTkavf~EtigNP~~~-v~Die~ia~iAh~~gvpliVDNT~ 186 (426)
T COG2873 135 DDPENFEAAIDENTKAVFAETIGNPGLD-VLDIEAIAEIAHRHGVPLIVDNTF 186 (426)
T ss_pred CCHHHHHHHhCcccceEEEEeccCCCcc-ccCHHHHHHHHHHcCCcEEEecCC
Confidence 45555655554 44566542 2222222 223578888999999999999865
No 203
>PLN02231 alanine transaminase
Probab=25.65 E-value=82 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.5
Q ss_pred EEEecCCCCCC--hHHHHHHHHHHHHhcCCCEEEccc
Q 026308 34 LYVNVGTLSAN--WLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 34 vvi~~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
++++++-|+.. ..+.++++++.|+++++.+|.|=+
T Consensus 276 vl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv 312 (534)
T PLN02231 276 VVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV 312 (534)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34455444322 345567778888888887777754
No 204
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.59 E-value=43 Score=26.38 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=26.7
Q ss_pred CchhhhhcccCcEEEecCC-CCCChHHHHHHHHHHHHhcCCCEEEccccc
Q 026308 22 EEIPDFTPHVRALYVNVGT-LSANWLPSMKAAAQLASQLGKPWVLDPVAA 70 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~-~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~ 70 (240)
..+.+.+ .+|.+-.+ |+ ++. +.++.+.+..++.++.++.||+..
T Consensus 15 ~~lk~~~-d~~~I~T~-Gs~i~~---~~i~~i~~~~~~rgVIIfTDpD~~ 59 (174)
T TIGR00334 15 ARIKQAF-DVDVIETN-GSALKD---ETINLIKKAQKKQGVIILTDPDFP 59 (174)
T ss_pred HHHHHhc-CceEEEEC-CCccCH---HHHHHHHHHhhcCCEEEEeCCCCc
Confidence 3444444 25555554 65 443 444555556677888899999974
No 205
>PRK08068 transaminase; Reviewed
Probab=25.59 E-value=97 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=22.3
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+.+++++. |.-|+.. ..+.++++++.++++++.+|+|-.
T Consensus 167 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Dea 208 (389)
T PRK08068 167 KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFA 208 (389)
T ss_pred cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehh
Confidence 45566664 3222221 234456677777777777777764
No 206
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=25.19 E-value=74 Score=27.92 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCchhhhhc-ccCcEEEec-CCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVNV-GTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~~-G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++.++ +..+|++.. ..+.... .-+.++.+.++++++++|+|-.-
T Consensus 114 d~~~l~~~i~~~~~~v~~e~~~np~g~~-~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 114 DPEALEAAIKPETKLVYVESPTNPTLKV-VDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCCee-cCHHHHHHHHHHcCCEEEEECCC
Confidence 3455655554 455666532 1122222 22577888899999999999863
No 207
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.15 E-value=4.6e+02 Score=25.35 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHH
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAAR 126 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~ 126 (240)
+.....++.+++.|+.+.+|=.+.+.+++ ..+....+++||-+..=...+... .....+.+...
T Consensus 678 ~~~~~~l~~l~~~G~~i~ld~fg~~~~~~-----~~l~~l~~d~iKid~~~~~~~~~~-----------~~~~~~~~~~~ 741 (799)
T PRK11359 678 TEIFKRIQILRDMGVGLSVDDFGTGFSGL-----SRLVSLPVTEIKIDKSFVDRCLTE-----------KRILALLEAIT 741 (799)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhH-----HHHhhCCCCEEEECHHHHhhcccC-----------hhHHHHHHHHH
Confidence 45567788899999999999877442222 122224689999886644444332 12345666777
Q ss_pred HHHHhcCCEEEEecCc
Q 026308 127 CLAEASGAIVAVSGAV 142 (240)
Q Consensus 127 ~l~~~~~~~VvitG~~ 142 (240)
.+++..+..||.+|-.
T Consensus 742 ~~~~~~~i~via~gVe 757 (799)
T PRK11359 742 SIGQSLNLTVVAEGVE 757 (799)
T ss_pred HHHHHCCCeEEEEcCC
Confidence 7888888889999964
No 208
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=25.12 E-value=1.2e+02 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccC
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAG 71 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~ 71 (240)
.+.++.+.+.|+++|+.+|+|=+.-+
T Consensus 242 ~~yl~~lr~lc~~~gillI~DEV~TG 267 (453)
T PRK06943 242 PSYLRGLRALCDRYGVHLIADEIAVG 267 (453)
T ss_pred HHHHHHHHHHHHHcCCEEEeechhhC
Confidence 46778888899999999999987643
No 209
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.06 E-value=2.4e+02 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=8.0
Q ss_pred HHHHHHHhcCC---CEEEcc
Q 026308 51 AAAQLASQLGK---PWVLDP 67 (240)
Q Consensus 51 ~~~~~~~~~~~---~vvlDp 67 (240)
+.++.+.+.|+ .+++||
T Consensus 167 ~~i~~a~~~GI~~~~IilDP 186 (282)
T PRK11613 167 EQIARCEAAGIAKEKLLLDP 186 (282)
T ss_pred HHHHHHHHcCCChhhEEEeC
Confidence 33444444444 455555
No 210
>PRK07503 methionine gamma-lyase; Provisional
Probab=24.97 E-value=95 Score=27.74 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=34.5
Q ss_pred HHcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 9 LSAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 9 ~~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
...|..+... .+++++++.+. +..+|++. +..+.... .-++++.+.++++++++|+|-.-
T Consensus 126 ~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~-~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 126 GEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRL-VDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred hhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCee-eCHHHHHHHHHHcCCEEEEECCC
Confidence 3456555222 34555665553 45666652 22122222 22477788889999999999864
No 211
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=24.94 E-value=69 Score=27.66 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCEEEccc
Q 026308 49 MKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~ 68 (240)
++++.+.++++++++++|..
T Consensus 157 ~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 157 IREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred HHHHHHHHHHcCCEEEEEch
Confidence 47778888899999999986
No 212
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=24.79 E-value=1.4e+02 Score=22.77 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhcCCEEE
Q 026308 120 DAMEAARCLAEASGAIVA 137 (240)
Q Consensus 120 ~~~~~a~~l~~~~~~~Vv 137 (240)
+..+..++++++.+..++
T Consensus 132 ~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 132 AYNAVIRAVAARYGAVHV 149 (185)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 444556666666655444
No 213
>PRK11059 regulatory protein CsrD; Provisional
Probab=24.75 E-value=4.6e+02 Score=24.96 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHH
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEA 124 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~ 124 (240)
.+.+...++.+++.|+.+.+|=.+.+.+++ ..++ ..++.||-+..=...+...+ ......+.
T Consensus 532 ~~~~~~~l~~L~~~G~~iaiddfG~g~~s~------~~L~~l~~d~iKid~s~v~~i~~~~-----------~~~~~v~s 594 (640)
T PRK11059 532 ISRLRPVLRMLRGLGCRLAVDQAGLTVVST------SYIKELNVELIKLHPSLVRNIHKRT-----------ENQLFVRS 594 (640)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCcccH------HHHHhCCCCEEEECHHHHhhhhcCc-----------hhHHHHHH
Confidence 355677888899999999999766443332 2222 36899998876665554321 12344555
Q ss_pred HHHHHHhcCCEEEEecCc
Q 026308 125 ARCLAEASGAIVAVSGAV 142 (240)
Q Consensus 125 a~~l~~~~~~~VvitG~~ 142 (240)
.-.+++..+..|+.+|-.
T Consensus 595 li~~a~~~~i~viAegVE 612 (640)
T PRK11059 595 LVGACAGTETQVFATGVE 612 (640)
T ss_pred HHHHHHHCCCeEEEEEeC
Confidence 566777778889999863
No 214
>PRK06247 pyruvate kinase; Provisional
Probab=24.49 E-value=73 Score=29.38 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=32.8
Q ss_pred chhhhhcccCcEEEecCCCC-----CChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 23 EIPDFTPHVRALYVNVGTLS-----ANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~-----~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
.+.++++.+|.++++.|=+. +......+++++.|++.++|+|+=.
T Consensus 226 nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~AT 275 (476)
T PRK06247 226 RLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVAT 275 (476)
T ss_pred hHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 45667778999999866532 2234456788899999999999833
No 215
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=24.48 E-value=78 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++++.+.++++++++++|..-
T Consensus 172 ~~~i~~l~~~~~~~livD~a~ 192 (373)
T TIGR03812 172 IEELSKIALENGIYLHVDAAF 192 (373)
T ss_pred HHHHHHHHHHcCCeEEEEcCc
Confidence 567777888889999999953
No 216
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=24.12 E-value=1.2e+02 Score=21.56 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=21.7
Q ss_pred cCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHH
Q 026308 59 LGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEII 99 (240)
Q Consensus 59 ~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~ 99 (240)
....+|+|..+.. .-.+..+..++...+|+|+|..=+.
T Consensus 58 ~~~dvvVE~t~~~---~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 58 PDIDVVVECTSSE---AVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp TT-SEEEE-SSCH---HHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred cCCCEEEECCCch---HHHHHHHHHHHCCCeEEEECHHHhh
Confidence 3678999995421 1122345666667999999986433
No 217
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=24.05 E-value=1.1e+02 Score=26.92 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=28.8
Q ss_pred CCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++.+. +...|++. +..+... ..-++++.+.++++++++|+|-.-
T Consensus 128 d~~~l~~~i~~~tklV~le~p~np~g~-~~dl~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 128 DLNAWEAAVKPNTKLVFVETPSNPLGE-LVDIAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred CHHHHHHhcCCCceEEEEECCCCCCCe-eeCHHHHHHHHHHcCCEEEEECCC
Confidence 3445555443 34566653 2112222 123477788889999999999873
No 218
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=23.90 E-value=1.8e+02 Score=24.36 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCC---CEEEcc
Q 026308 50 KAAAQLASQLGK---PWVLDP 67 (240)
Q Consensus 50 ~~~~~~~~~~~~---~vvlDp 67 (240)
++.++.+.+.|+ .+++||
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii~DP 173 (257)
T cd00739 153 EARLEAAESAGVARNRIILDP 173 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEec
Confidence 344444444554 355555
No 219
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.89 E-value=90 Score=27.90 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcC-CCEEEcccc
Q 026308 19 HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLG-KPWVLDPVA 69 (240)
Q Consensus 19 ~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~-~~vvlDp~~ 69 (240)
.+.++++..++ +.++|++. ++.+.- ..--+..+.+.++++| +++|+|...
T Consensus 128 ~d~~~l~~~l~~~t~~v~~EspsNP~l-~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 128 TDLEALEAALRPNTKLVFLESPSNPTL-EVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp TSHHHHHHHHCTTEEEEEEESSBTTTT-B---HHHHHHHHHHTTT-EEEEECTT
T ss_pred hhHHHHHhhccccceEEEEEcCCCccc-ccccHHHHHHHHHHhCCceEEeeccc
Confidence 34556666555 45666653 222221 2334578888999998 999999865
No 220
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=3.3e+02 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=25.0
Q ss_pred hhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcc
Q 026308 27 FTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 27 ~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp 67 (240)
-+.++|+|++|..-.+..+...|.. .+..|..|.|+|-|-
T Consensus 141 ~l~~ADvILvGVSRtsKTPtS~YLA-~q~ikaAN~PlVpe~ 180 (273)
T COG1806 141 NLDEADVILVGVSRTSKTPTSLYLA-LQGIKAANYPLVPED 180 (273)
T ss_pred ccCccCEEEEeeccCCCCchHHHHH-HhcchhccCCcCCCC
Confidence 4568999998744333333444433 345778899998743
No 221
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=23.58 E-value=77 Score=27.55 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEc
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIR 92 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vit 92 (240)
+.++.+.+.|+++|+++|+|=+.-+.+..-.....+.....||++|
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~ 243 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVT 243 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE
T ss_pred chhhehcccccccccceecccccccccccCCccceecccccCcccc
Confidence 5568888889999999999998754422111111122224677776
No 222
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.42 E-value=1.6e+02 Score=24.66 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-cC-CeEEcCCHHHHHHH--HcCCCCCCcCCCCCCChHHH
Q 026308 46 LPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ-LK-PTVIRGNASEIIAL--SRASVGPTKGVDSSHESMDA 121 (240)
Q Consensus 46 ~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~-~~-~~vitPN~~E~~~L--~g~~~~~~~~~~~~~~~~~~ 121 (240)
.+.+..+.+.+++.|++++-+|--... .+.+.++.. .+ +.-..=|..=+..+ +|.++...+|.. .+.+++
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~----~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~--~t~~e~ 148 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRD----VEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMG--NTIEEW 148 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhh----HHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCC--CCHHHH
Confidence 455677777888999999887754211 111122211 00 11111232212222 233321112221 257888
Q ss_pred HHHHHHHHHhcCCEEEEe
Q 026308 122 MEAARCLAEASGAIVAVS 139 (240)
Q Consensus 122 ~~~a~~l~~~~~~~Vvit 139 (240)
..++..+.+.++..+++.
T Consensus 149 ~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 149 LYAAEYILSSGNGNVILC 166 (260)
T ss_pred HHHHHHHHHcCCCcEEEE
Confidence 888888887777655555
No 223
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=4.4e+02 Score=22.01 Aligned_cols=86 Identities=15% Similarity=-0.016 Sum_probs=51.7
Q ss_pred ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc----cCCeEEcCCHHHHHHHHcCC
Q 026308 30 HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ----LKPTVIRGNASEIIALSRAS 105 (240)
Q Consensus 30 ~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~----~~~~vitPN~~E~~~L~g~~ 105 (240)
.++.|.+..|=+. -+.+.+..+++.+++.|.++.+|..+... .....++.+ ...|+=-++..-...++|.+
T Consensus 83 ~~~gvt~SGGEP~-~q~e~~~~~~~~ake~Gl~~~l~TnG~~~----~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~ 157 (260)
T COG1180 83 SGGGVTFSGGEPT-LQAEFALDLLRAAKERGLHVALDTNGFLP----PEALEELLPLLDAVLLDLKAFDDELYRKLTGAD 157 (260)
T ss_pred CCCEEEEECCcch-hhHHHHHHHHHHHHHCCCcEEEEcCCCCC----HHHHHHHHhhcCeEEEeeccCChHHHHHHhCCC
Confidence 5688887655442 24577888899999999999999988321 112223332 12233233333377777753
Q ss_pred CCCCcCCCCCCChHHHHHHHHHHHHhc
Q 026308 106 VGPTKGVDSSHESMDAMEAARCLAEAS 132 (240)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~a~~l~~~~ 132 (240)
. +.+.+.++.+.+.+
T Consensus 158 ~------------~~vl~~~~~l~~~g 172 (260)
T COG1180 158 N------------EPVLENLELLADLG 172 (260)
T ss_pred c------------HHHHHHHHHHHcCC
Confidence 1 45666676666643
No 224
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.00 E-value=1.1e+02 Score=27.59 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=34.7
Q ss_pred HcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 10 SAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 10 ~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
..|...... .+++.+++.++ +...|++. ++.+.....+ +.++.+.++++++++|+|..-
T Consensus 126 ~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d-i~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 126 KLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLD-IEAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred hCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccC-HHHHHHHHHHcCCEEEEeCCC
Confidence 355555222 34555655553 45666663 3323222222 467888899999999999864
No 225
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=22.96 E-value=46 Score=29.67 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=28.3
Q ss_pred chhhhhcccCcEEEecCCCCCCh--HHHHHHHHHHHHhcCCCEEEcc
Q 026308 23 EIPDFTPHVRALYVNVGTLSANW--LPSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~~--~~~~~~~~~~~~~~~~~vvlDp 67 (240)
.+++.++.+|.|+.+-|.++..+ -+....+.+.++++++|+|+=.
T Consensus 277 ~l~~~l~~aDlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~ 323 (377)
T PF02595_consen 277 GLEERLEDADLVITGEGRLDAQTLAGKVPGGVARLAKKHGVPVIAVA 323 (377)
T ss_dssp THHHHCCC-SEEEE--CECSTTTTTTCHHHHHHCCHCCTT--EEEEE
T ss_pred CHHHHhcCCCEEEECccccccccCCCcHHHHHHHHHHHcCCcEEEEe
Confidence 56788899999998877654321 1244667788899999998744
No 226
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.94 E-value=4.7e+02 Score=23.02 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=23.7
Q ss_pred CCchhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEE-cccc
Q 026308 21 IEEIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVL-DPVA 69 (240)
Q Consensus 21 ~~~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvl-Dp~~ 69 (240)
.+++.++++.+|+++..+|-. .+..+...|+|+|+ ||.+
T Consensus 264 ~~~~~~~~~~aDl~I~k~gg~----------tl~EA~a~G~PvI~~~~~p 303 (391)
T PRK13608 264 TKHMNEWMASSQLMITKPGGI----------TISEGLARCIPMIFLNPAP 303 (391)
T ss_pred cchHHHHHHhhhEEEeCCchH----------HHHHHHHhCCCEEECCCCC
Confidence 345667778888887654411 12223456888887 6765
No 227
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=22.94 E-value=2e+02 Score=25.43 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=31.6
Q ss_pred hHHHHHcCCCcccCCCCCchhhhhc-ccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCE
Q 026308 5 ANTLLSAGASPAMLHTIEEIPDFTP-HVRALYVNVGTLSANWLPSMKAAAQLASQLGKPW 63 (240)
Q Consensus 5 a~~~~~~g~~~~~~~~~~~~~~~~~-~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~v 63 (240)
.+.+...|+.+.+...-....++.. ..|.+++.+|--++........+++.+.+.++|+
T Consensus 192 vr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~Pi 251 (360)
T PRK12564 192 LRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPI 251 (360)
T ss_pred HHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeE
Confidence 3456677888855422123333332 5899999766323322233344555555556665
No 228
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=22.90 E-value=2e+02 Score=26.31 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=37.9
Q ss_pred hhcccCcEEEecCC--CCC------ChHHHHH---HHHHHHH-hcCCCEEE-cccccCCcccchHHHHHHhccCCeEEcC
Q 026308 27 FTPHVRALYVNVGT--LSA------NWLPSMK---AAAQLAS-QLGKPWVL-DPVAAGASGFRLNACLELVQLKPTVIRG 93 (240)
Q Consensus 27 ~~~~~d~vvi~~G~--~~~------~~~~~~~---~~~~~~~-~~~~~vvl-Dp~~~~~~~~~~~~~~~~~~~~~~vitP 93 (240)
+..+.|.++++ |+ +.+ ...+.++ +.++.++ ..++|+-+ +++..+ ..++......++ +..|.|=-
T Consensus 206 ~~~~~d~~vlS-Glq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~d-~~l~~~i~~~il-p~vDSlGm 282 (444)
T PF04587_consen 206 IAFKPDLAVLS-GLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFAD-EELRKEILEKIL-PHVDSLGM 282 (444)
T ss_dssp HHTT-SEEEEE--GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----SS-HHHHHHHHHHHG-GGSSEEEE
T ss_pred hccCCCEEEEe-ccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccccC-HHHHHHHHHHhh-cccccccc
Confidence 33459999995 66 332 2222333 3334455 46778877 444321 112222233344 58999999
Q ss_pred CHHHHHHHHc
Q 026308 94 NASEIIALSR 103 (240)
Q Consensus 94 N~~E~~~L~g 103 (240)
|+.|+..|+.
T Consensus 283 NEqEL~~l~~ 292 (444)
T PF04587_consen 283 NEQELANLLS 292 (444)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999999865
No 229
>PLN02651 cysteine desulfurase
Probab=22.85 E-value=86 Score=27.28 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++++.+.++++|+++++|..-
T Consensus 157 l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 157 VEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHHcCCEEEEEcch
Confidence 567888889999999999864
No 230
>PLN02242 methionine gamma-lyase
Probab=22.84 E-value=91 Score=28.09 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=35.2
Q ss_pred cCCCccc--CCCCCchhhhhcc--cCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 11 AGASPAM--LHTIEEIPDFTPH--VRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 11 ~g~~~~~--~~~~~~~~~~~~~--~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.|..+.. ..+++++++.++. ...|++. ++.+... ..-+.++.+.++++++++|+|-.-
T Consensus 140 ~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NPtG~-v~dl~~I~~la~~~gi~livDea~ 202 (418)
T PLN02242 140 CNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLT-VADIPELARIAHEKGVTVVVDNTF 202 (418)
T ss_pred cCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCCCCc-ccCHHHHHHHHHHhCCEEEEECCC
Confidence 4655522 2356667666643 5566653 2223222 223578888899999999999754
No 231
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.80 E-value=83 Score=27.94 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=29.7
Q ss_pred CCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++.+. +.+.|++. +..+... ..-++++.+.++++++++|+|-.-
T Consensus 135 d~e~l~~~i~~~tklV~ie~p~NPtg~-~~dl~~I~~la~~~gi~lIvD~a~ 185 (388)
T PRK07811 135 DLDAVRAAITPRTKLIWVETPTNPLLS-ITDIAALAELAHDAGAKVVVDNTF 185 (388)
T ss_pred CHHHHHHhcCcCCeEEEEECCCCCcce-ecCHHHHHHHHHHcCCEEEEECCC
Confidence 4455555543 45566653 2222211 234577888899999999999753
No 232
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=22.68 E-value=1.2e+02 Score=26.91 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHcCCCcccC--CCCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 9 LSAGASPAML--HTIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 9 ~~~g~~~~~~--~~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
...|..+... ++.+++++.+. +...|++. +..+..... -+.++.+.++++++++|+|-.
T Consensus 122 ~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~-dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 122 ARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELA-DIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred HHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcCCEEEEECC
Confidence 3456666333 34455555553 34556652 222322222 247888889999999999985
No 233
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=22.56 E-value=1.2e+02 Score=26.66 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=25.4
Q ss_pred cCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 31 VRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 31 ~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+++++. +..+... ..+.++++++.++++++++|+|-.-
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccc
Confidence 4566664 2222221 1345678888899999999999864
No 234
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=22.44 E-value=1.2e+02 Score=25.46 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred chhhhhcc-cCcEEEe-cCCC----CC--C--hHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhc-------
Q 026308 23 EIPDFTPH-VRALYVN-VGTL----SA--N--WLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQ------- 85 (240)
Q Consensus 23 ~~~~~~~~-~d~vvi~-~G~~----~~--~--~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~------- 85 (240)
++.+.+.. ..++.|| .|+- .. . +.+.++.-++.+++.+.|+++=..... +...+.++
T Consensus 78 ~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~------~d~~~iL~~~~~~~~ 151 (256)
T COG0084 78 ELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAH------EDTLEILKEEGAPVG 151 (256)
T ss_pred HHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccH------HHHHHHHHhcCCCCC
Confidence 45555553 6777775 5551 12 1 567778888999999999999554311 11122222
Q ss_pred cCCeEEcCCHHHHHHHHcC
Q 026308 86 LKPTVIRGNASEIIALSRA 104 (240)
Q Consensus 86 ~~~~vitPN~~E~~~L~g~ 104 (240)
.-.+..|....+++.+...
T Consensus 152 gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 152 GVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred EEEEccCCCHHHHHHHHHc
Confidence 1136678888888887643
No 235
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=22.39 E-value=90 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCchhhhhc--ccCcEEEecC-CCCCChHHHHHHHHHHHHhcCCCEEEccc
Q 026308 21 IEEIPDFTP--HVRALYVNVG-TLSANWLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 21 ~~~~~~~~~--~~d~vvi~~G-~~~~~~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
++.+++.+. +.+.+++... .+.... .-++.+.+.++++++++++|..
T Consensus 113 ~~~l~~~i~~~~~~~v~i~~~~~~~G~~-~~~~~i~~~a~~~~~~li~D~~ 162 (356)
T cd06451 113 PEEIAEALEQHDIKAVTLTHNETSTGVL-NPLEGIGALAKKHDALLIVDAV 162 (356)
T ss_pred HHHHHHHHhccCCCEEEEeccCCCcccc-cCHHHHHHHHHhcCCEEEEeee
Confidence 345555553 4456665322 222221 2246677778899999999985
No 236
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.00 E-value=54 Score=23.47 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=24.6
Q ss_pred chhhhhcccCcEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 23 EIPDFTPHVRALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 23 ~~~~~~~~~d~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+.....+.|.+++|+|-..-... ..+.+.++++|+.+.+-+..
T Consensus 46 ~l~~~~p~pe~liiGtG~~~~~~~---~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 46 ELLELEPKPEVLIIGTGKRQLFLP---PELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp HHHCTCCS-SEEEEEETTS-SECT---HHHHHHHHTTT-EEEEE-HH
T ss_pred HHHhccCCCcEEEEccCCccccCC---HHHHHHHHHcCCeEEEECHH
Confidence 333444578999999996311111 34556678888877765544
No 237
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=21.91 E-value=79 Score=27.43 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++++.+.++++++++++|..-
T Consensus 158 ~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 158 VKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred HHHHHHHHHHcCCEEEEEhhh
Confidence 467888889999999999753
No 238
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=21.91 E-value=1.7e+02 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCCEEEcccccCC
Q 026308 47 PSMKAAAQLASQLGKPWVLDPVAAGA 72 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp~~~~~ 72 (240)
..++.+.+.|+++|+++|+|=+.-+.
T Consensus 606 ~yl~~lr~lc~~~gilLI~DEV~TGf 631 (817)
T PLN02974 606 LFQRALVQVCRSRKIPVIFDEVFTGL 631 (817)
T ss_pred HHHHHHHHHHHHhCCEEEEeecccCC
Confidence 66788888999999999999988554
No 239
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=21.77 E-value=93 Score=26.96 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCEEEccc
Q 026308 49 MKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~ 68 (240)
++++.+.++++++++++|..
T Consensus 148 i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 148 IEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred HHHHHHHHHHcCCEEEEEcc
Confidence 46788889999999999975
No 240
>PRK06290 aspartate aminotransferase; Provisional
Probab=21.76 E-value=1.3e+02 Score=26.92 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=24.1
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPV 68 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~ 68 (240)
+.+.+++. |.-|+.. ..+.++.+++.++++++.+|.|=.
T Consensus 179 ~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEa 220 (410)
T PRK06290 179 KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAA 220 (410)
T ss_pred cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecc
Confidence 45667665 4333222 234567777888888887877754
No 241
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.76 E-value=1.1e+02 Score=24.82 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=55.0
Q ss_pred CchhhhhcccCcEEEecCC--CCCChHHHHHHHHHHHHhcC-CCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHH
Q 026308 22 EEIPDFTPHVRALYVNVGT--LSANWLPSMKAAAQLASQLG-KPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEI 98 (240)
Q Consensus 22 ~~~~~~~~~~d~vvi~~G~--~~~~~~~~~~~~~~~~~~~~-~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~ 98 (240)
.+..++....|.|+...-+ ..++-++ .+..++.... +--+=--.|.+. .+ .++.+..+..++.|++...
T Consensus 7 ~e~~~~~~~~~aVcFDvDSTvi~eEgId---elA~~~G~~~~Va~~T~rAMng~--~~---F~eaL~~Rl~llqp~~~qv 78 (227)
T KOG1615|consen 7 SELAKLWRSADAVCFDVDSTVIQEEGID---ELAAYCGVGEAVAEVTRRAMNGE--AD---FQEALAARLSLLQPLQVQV 78 (227)
T ss_pred HHHHHHHHhcCeEEEecCcchhHHhhHH---HHHHHhCchHHHHHHHHHHhCCC--Cc---HHHHHHHHHHHhcccHHHH
Confidence 3667788889999876443 2333333 3333221110 000000011111 11 2344444678999999988
Q ss_pred HHHHcC-CCCCCcCCCCCCChHHHHHHHHHHHHhcCCEEEEecC
Q 026308 99 IALSRA-SVGPTKGVDSSHESMDAMEAARCLAEASGAIVAVSGA 141 (240)
Q Consensus 99 ~~L~g~-~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~VvitG~ 141 (240)
...... +. +-..-+.+...+|.+++....+++|+
T Consensus 79 ~~~v~~~k~---------~lT~Gi~eLv~~L~~~~~~v~liSGG 113 (227)
T KOG1615|consen 79 EQFVIKQKP---------TLTPGIRELVSRLHARGTQVYLISGG 113 (227)
T ss_pred HHHHhcCCC---------ccCCCHHHHHHHHHHcCCeEEEEcCC
Confidence 877654 22 11234567788888887777888875
No 242
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=21.67 E-value=1.7e+02 Score=26.81 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=33.3
Q ss_pred cCCCCCChHHHHHHHHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcC
Q 026308 38 VGTLSANWLPSMKAAAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRG 93 (240)
Q Consensus 38 ~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitP 93 (240)
.|+..+. ...++++-+.|+++++.+|.|=++-+.+..-..+.-+-..-.||+++-
T Consensus 228 gG~~~pp-~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~ 282 (449)
T COG0161 228 GGMLVPP-PGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCL 282 (449)
T ss_pred CCcccCC-hHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeee
Confidence 5673221 255688888899999999999998665433221111111135677664
No 243
>PRK15447 putative protease; Provisional
Probab=21.36 E-value=5.1e+02 Score=22.10 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=44.0
Q ss_pred ccCcEEEecCCC---CCChHHHHHHHHHHHHhcCCCEEEcc-cccCCcccchHHHHHHhccCCe-EEcCCHHHHHHHH
Q 026308 30 HVRALYVNVGTL---SANWLPSMKAAAQLASQLGKPWVLDP-VAAGASGFRLNACLELVQLKPT-VIRGNASEIIALS 102 (240)
Q Consensus 30 ~~d~vvi~~G~~---~~~~~~~~~~~~~~~~~~~~~vvlDp-~~~~~~~~~~~~~~~~~~~~~~-vitPN~~E~~~L~ 102 (240)
.+|+|++|.... .+-..+.+.++++.+++.|+++++=. ..... ........+++...++ |+.-|.+++..+-
T Consensus 28 gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~-~~e~~~l~~~l~~~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 28 PVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEA-PSELKELRRLVENGEFLVEANDLGAVRLLA 104 (301)
T ss_pred CCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccC-HHHHHHHHHHHhcCCCEEEEeCHHHHHHHH
Confidence 589999974331 23456778899999999998888722 21110 0011123444443343 7778999888776
No 244
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=20.94 E-value=81 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCccchhhHH-HHHHHHHHhc
Q 026308 161 MQKITATGCSV-TALIAAFVAV 181 (240)
Q Consensus 161 ~~~~~GaGD~l-ag~iaa~la~ 181 (240)
+.+|+|-||++ +|++.++++.
T Consensus 421 P~sTVGLGDtissgaF~~~~~~ 442 (446)
T TIGR02045 421 PKSTVGLGDTISTGAFVSYLAL 442 (446)
T ss_pred CcceeccCcccchhHHHHHHHH
Confidence 34579999999 5577776653
No 245
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=20.88 E-value=1.5e+02 Score=26.30 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCchhhhhc-ccCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 20 TIEEIPDFTP-HVRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 20 ~~~~~~~~~~-~~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+++++++.++ +.+.|++. +..+.... .-++.+.+.++++++++|+|-.-
T Consensus 123 d~e~l~~ai~~~t~lV~lesP~Nptg~~-~di~~I~~la~~~gi~vivD~t~ 173 (380)
T PRK06176 123 DLSQIKKAIKPNTKALYLETPSNPLLKI-TDLAQCASVAKDHGLLTIVDNTF 173 (380)
T ss_pred CHHHHHHhcCcCceEEEEECCCCCCcee-cCHHHHHHHHHHcCCEEEEECCc
Confidence 4455555553 35566652 22122121 22467888899999999999753
No 246
>PLN02368 alanine transaminase
Probab=20.82 E-value=1.3e+02 Score=26.98 Aligned_cols=7 Identities=0% Similarity=0.311 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026308 47 PSMKAAA 53 (240)
Q Consensus 47 ~~~~~~~ 53 (240)
+.++..+
T Consensus 195 ~~le~~i 201 (407)
T PLN02368 195 NNLRQSV 201 (407)
T ss_pred HHHHHHH
Confidence 3344433
No 247
>PRK07179 hypothetical protein; Provisional
Probab=20.78 E-value=1.3e+02 Score=26.73 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCCCchhhhhcc--cCcEEEe-cCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 19 HTIEEIPDFTPH--VRALYVN-VGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 19 ~~~~~~~~~~~~--~d~vvi~-~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
.+++.+++.++. ..+|++. +..+... +.-+.++.+.++++++.+|+|-+-
T Consensus 168 ~d~~~l~~~l~~~~~~lV~v~~v~n~tG~-i~pl~~I~~l~~~~~~~livDea~ 220 (407)
T PRK07179 168 NDVDHLRRQIERHGPGIIVVDSVYSTTGT-IAPLADIVDIAEEFGCVLVVDESH 220 (407)
T ss_pred CCHHHHHHHHHhcCCeEEEECCCCCCCCc-cccHHHHHHHHHHcCCEEEEECcc
Confidence 455666666643 2344443 1111111 222577888889999999999753
No 248
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=20.71 E-value=91 Score=28.12 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCCchhhhhcc-cCcEEEecCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 19 HTIEEIPDFTPH-VRALYVNVGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 19 ~~~~~~~~~~~~-~d~vvi~~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
++.+.++..+++ .++|.+- .|++. ...-+.++.+.++++|+++|||--.
T Consensus 150 ~~~~~~~~~i~~~t~~V~~E--SPsNPll~v~DI~~l~~la~~~g~~vvVDnTf 201 (409)
T KOG0053|consen 150 DDLKKILKAIKENTKAVFLE--SPSNPLLKVPDIEKLARLAHKYGFLVVVDNTF 201 (409)
T ss_pred hhHHHHHHhhccCceEEEEE--CCCCCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence 445566666665 7777763 33211 1122467778889999999999754
No 249
>PRK10534 L-threonine aldolase; Provisional
Probab=20.49 E-value=1.3e+02 Score=25.58 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCCEEEcc
Q 026308 47 PSMKAAAQLASQLGKPWVLDP 67 (240)
Q Consensus 47 ~~~~~~~~~~~~~~~~vvlDp 67 (240)
+.+.++++.++++++.+++|-
T Consensus 147 ~~l~~i~~~~~~~~~~lvvDE 167 (333)
T PRK10534 147 EYLKQAWEFTRERNLALHVDG 167 (333)
T ss_pred HHHHHHHHHHHHcCCeEEeeH
Confidence 445555666666666677765
No 250
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=20.46 E-value=1.9e+02 Score=24.48 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCEEEcccccCCcccchHHHHHHhccCCeEEcCCHHHHHHHHc
Q 026308 52 AAQLASQLGKPWVLDPVAAGASGFRLNACLELVQLKPTVIRGNASEIIALSR 103 (240)
Q Consensus 52 ~~~~~~~~~~~vvlDp~~~~~~~~~~~~~~~~~~~~~~vitPN~~E~~~L~g 103 (240)
++...+..++.+.+||.- + +. ++-.=+-||+.|+++|..
T Consensus 16 mAt~vet~dv~ILiDpGV-s-----------La-PkRy~LPPh~~E~erl~~ 54 (304)
T COG2248 16 MATFVETKDVGILIDPGV-S-----------LA-PKRYGLPPHQRELERLRQ 54 (304)
T ss_pred hhheeecCCeeEEECCcc-c-----------cC-ccccCCCCCHHHHHHHHH
Confidence 334445667889999964 1 11 234456789999888854
No 251
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=20.42 E-value=1.5e+02 Score=25.78 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEcccc
Q 026308 49 MKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 49 ~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.++.+.++++++++|+|-.-
T Consensus 193 ~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 193 LPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred HHHHHHHHHHhCCEEEEECcc
Confidence 467788899999999999874
No 252
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=20.41 E-value=1.5e+02 Score=25.90 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=25.1
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.+++++. +.-|+.. ..+.++++++.++++++.+|+|-.-
T Consensus 166 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y 208 (385)
T PRK09276 166 KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAY 208 (385)
T ss_pred cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecch
Confidence 45666664 3223222 2345677888888888888888753
No 253
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=20.39 E-value=1.6e+02 Score=23.19 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=33.4
Q ss_pred cCCCCCchhhhhcccC--cEEEecCCCCCChHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 17 MLHTIEEIPDFTPHVR--ALYVNVGTLSANWLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 17 ~~~~~~~~~~~~~~~d--~vvi~~G~~~~~~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+.-.++.+.++++++. ++++|.|.... .+..+.+.+.+++.++|++.-+-+
T Consensus 20 ~~~~p~~aa~lI~~AKrPlIivG~ga~~~--~ea~e~l~elaEkl~iPVvtT~~~ 72 (171)
T PRK00945 20 KIVSPKIAAMMIKKAKRPLLVVGSLLLDD--EELLDRAVKIAKKANIPVAATGGS 72 (171)
T ss_pred cccCHHHHHHHHHhCCCcEEEECcCcccc--chHHHHHHHHHHHHCCCEEEcccc
Confidence 3445566667776553 56667776541 134567777788889999987764
No 254
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.30 E-value=6.4e+02 Score=22.67 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=42.8
Q ss_pred HhcCCCEEEcccccCCcccchH---HHHHHhccCCeEEcCCHHHHHHHHcCCCCCCcCCCCCCChHHHHHHHHHHHH-h-
Q 026308 57 SQLGKPWVLDPVAAGASGFRLN---ACLELVQLKPTVIRGNASEIIALSRASVGPTKGVDSSHESMDAMEAARCLAE-A- 131 (240)
Q Consensus 57 ~~~~~~vvlDp~~~~~~~~~~~---~~~~~~~~~~~vitPN~~E~~~L~g~~~~~~~~~~~~~~~~~~~~~a~~l~~-~- 131 (240)
...+.|+++=|.|-........ ....+......++-|..++++ .|.. +.|- ..+.+++.....++.. +
T Consensus 113 la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~la--~~~~---g~gr--~~~~~~I~~~~~~~~~~~~ 185 (399)
T PRK05579 113 LATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLA--CGDV---GPGR--MAEPEEIVAAAERALSPKD 185 (399)
T ss_pred HhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCcccc--CCCc---CCCC--CCCHHHHHHHHHHHhhhcc
Confidence 3448899999976332222211 122333356889999887754 2322 1111 1356677666655442 1
Q ss_pred c-CCEEEEecC
Q 026308 132 S-GAIVAVSGA 141 (240)
Q Consensus 132 ~-~~~VvitG~ 141 (240)
+ +..|++||+
T Consensus 186 l~gk~vlITgG 196 (399)
T PRK05579 186 LAGKRVLITAG 196 (399)
T ss_pred cCCCEEEEeCC
Confidence 2 567999965
No 255
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=20.17 E-value=1.5e+02 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.1
Q ss_pred hhHHHHHcCCCcccCCCCCchhhhhcccCcEEEecCC
Q 026308 4 VANTLLSAGASPAMLHTIEEIPDFTPHVRALYVNVGT 40 (240)
Q Consensus 4 ~a~~~~~~g~~~~~~~~~~~~~~~~~~~d~vvi~~G~ 40 (240)
+.+++--+|+.+..+.++++ +.++|.+++ ||.
T Consensus 17 v~~Aler~G~~~~vs~d~~~----i~~AD~liL-PGV 48 (204)
T COG0118 17 VKKALERLGAEVVVSRDPEE----ILKADKLIL-PGV 48 (204)
T ss_pred HHHHHHHcCCeeEEecCHHH----HhhCCEEEe-cCC
Confidence 56778889999988888766 457899988 665
No 256
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=20.02 E-value=2.1e+02 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=25.8
Q ss_pred ccCcEEEe-cCCCCCC--hHHHHHHHHHHHHhcCCCEEEcccc
Q 026308 30 HVRALYVN-VGTLSAN--WLPSMKAAAQLASQLGKPWVLDPVA 69 (240)
Q Consensus 30 ~~d~vvi~-~G~~~~~--~~~~~~~~~~~~~~~~~~vvlDp~~ 69 (240)
+..++++. +..++.. ..+.+.++++.++++++.+|+|-.-
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y 184 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECY 184 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecch
Confidence 45566663 2223222 2345678888899999999999753
Done!