Query 026309
Match_columns 240
No_of_seqs 184 out of 380
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k89_A PLA2P, PLAP, phospholip 92.6 0.3 1E-05 36.1 6.2 39 41-82 33-71 (80)
2 2lru_A Serine/threonine-protei 83.8 0.23 7.8E-06 38.0 0.0 45 115-162 49-93 (98)
3 3l3f_X Protein DOA1, DOA1/UFD3 71.1 7.3 0.00025 35.9 6.3 39 41-82 49-87 (362)
4 3pst_A Protein DOA1; protein d 70.8 6.8 0.00023 36.9 6.2 39 41-82 112-150 (425)
5 2lru_A Serine/threonine-protei 72.7 0.94 3.2E-05 34.6 0.0 49 35-85 40-92 (98)
6 2k89_A PLA2P, PLAP, phospholip 67.5 16 0.00056 26.7 6.3 52 100-157 19-70 (80)
7 2h7b_A Core-binding factor, ML 39.1 51 0.0018 25.2 5.1 43 45-87 38-85 (105)
8 2p6v_A Transcription initiatio 24.1 51 0.0018 25.6 2.8 23 45-67 53-75 (114)
9 2xc7_A Phosphorylated adapter 22.0 1E+02 0.0035 23.4 4.2 30 50-79 6-36 (104)
10 2qm4_A Non-homologous END-join 21.3 79 0.0027 27.2 3.8 107 26-137 27-140 (235)
11 3l3f_X Protein DOA1, DOA1/UFD3 21.1 1.5E+02 0.0051 27.1 5.8 56 96-157 31-86 (362)
No 1
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=92.59 E-value=0.3 Score=36.09 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.9
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026309 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (240)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ 82 (240)
.=.|.+| .|-.=|+.+|++.+||..|..+|++-|.+...
T Consensus 33 LpyN~~d---nP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 33 LPYNTSD---DPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp EEECTTS---CHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred cCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4578888 79999999999999999999999999998654
No 2
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=83.84 E-value=0.23 Score=38.03 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=38.9
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Q 026309 115 HFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQLYEIAI 162 (240)
Q Consensus 115 ~FeWdL~~~~~tPE~FA~~~c~DLgL~~~ef~~aIa~aIreQl~~~~~ 162 (240)
+|..||.. .+|+.+|.-+|..+.|+. +=.+.||..|+.++..+++
T Consensus 49 eF~Fdle~--Dta~eVA~EMVe~~~l~e-~D~~~VaklI~~~v~~~~r 93 (98)
T 2lru_A 49 EFSFDLER--DVPEDVAQEMVESGYVCE-GDHKTMAKAIKDRVSLIKR 93 (98)
Confidence 68899975 599999999999999994 7778999999999876654
No 3
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=71.08 E-value=7.3 Score=35.91 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=34.9
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026309 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (240)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ 82 (240)
.=.|.+| .|-.=|+.+|++.+||..|..||++-|.+-..
T Consensus 49 lpyN~~~---np~~~A~~F~~~~~l~~~y~~~i~~fi~~n~~ 87 (362)
T 3l3f_X 49 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQFILKNTN 87 (362)
T ss_dssp EEECTTS---CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHCC
T ss_pred CCCcCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 5678888 79999999999999999999999999988543
No 4
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=70.82 E-value=6.8 Score=36.91 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.4
Q ss_pred EEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 026309 41 FTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLT 82 (240)
Q Consensus 41 F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ 82 (240)
.=.|.+| .|-.=|+.+|.+.+||..|..||++-|.+-..
T Consensus 112 LpyN~~~---np~~~A~~Fi~~~~L~~~y~~qi~~FI~~N~~ 150 (425)
T 3pst_A 112 LPINVSD---NPYTAADNFLARYELPMSYRDQVVQLILKNTN 150 (425)
T ss_dssp EEECTTC---CHHHHHHHHHHHHTCCGGGHHHHHHHHHHHC-
T ss_pred CCccCCC---CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence 5578888 79999999999999999999999999988544
No 5
>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}
Probab=72.68 E-value=0.94 Score=34.63 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=40.1
Q ss_pred cEEEE----EEEecCCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026309 35 QRYKD----AFTWNPSDPDSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (240)
Q Consensus 35 ~klrD----~F~WNlne~~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ey~ 85 (240)
.|.|| .|..|+.-. |++.+|+.||+.+.+|..=...|+..|+.|+.-+.
T Consensus 40 gk~KeNeaIeF~Fdle~D--ta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~ 92 (98)
T 2lru_A 40 GKYKDNEAIEFSFDLERD--VPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIK 92 (98)
Confidence 35554 478888743 89999999999999999888899999999987553
No 6
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=67.49 E-value=16 Score=26.69 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred eeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 026309 100 PIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (240)
Q Consensus 100 pI~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~~c~DLgL~~~ef~~aIa~aIreQl 157 (240)
.+.+||.-|+..+ +.-.|.+ -+|-.=|+.+|.+.+|| ..|..+||.-|....
T Consensus 19 VFdVdi~dG~~~l--kLpyN~~---dnP~~aAqkFi~~n~Lp-~~yldqI~~FI~~N~ 70 (80)
T 2k89_A 19 VFSIDVNEGGPSY--KLPYNTS---DDPWLTAYNFLQKNDLN-PMFLDQVAKFIIDNT 70 (80)
T ss_dssp EEEECCSSSCSCE--EEEECTT---SCHHHHHHHHHHHHTCC-TTHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCccc--ccCccCC---CCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC
Confidence 3444444333322 2344554 48999999999999999 599999998886543
No 7
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=39.07 E-value=51 Score=25.24 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHhhcc
Q 026309 45 PSDPDSEVVVFAKRTVRDLKLPP-----QFITQIAQSIQTQLTEFRSY 87 (240)
Q Consensus 45 lne~~itpE~FA~~lc~Dl~lp~-----~f~~~I~~sI~~Ql~ey~~~ 87 (240)
+-+..||||+|...|=+.+..|+ .|...-.-+.|.++..-+..
T Consensus 38 Ll~~~i~~EeFt~~Lq~~lns~pqP~lvPFLK~sLp~Lr~~l~~~a~~ 85 (105)
T 2h7b_A 38 LVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHAARL 85 (105)
T ss_dssp HHTSSCCHHHHHHHHHHHSSSSCCSSSHHHHHTTHHHHHHHHHHHGGG
T ss_pred HHhCCCCHHHHHHHHHHHhcCCCCcchhHHHHHhHHHHHHHHHHHHHH
Confidence 44678999999999999999975 46555556777777655443
No 8
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=24.10 E-value=51 Score=25.58 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh
Q 026309 45 PSDPDSEVVVFAKRTVRDLKLPP 67 (240)
Q Consensus 45 lne~~itpE~FA~~lc~Dl~lp~ 67 (240)
|-+..|+||+|...|=+.+..|+
T Consensus 53 Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 53 LLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp HHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHccCCHHHHHHHHHHHHcCCC
Confidence 44678999999999999999975
No 9
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=22.04 E-value=1e+02 Score=23.35 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHcCCCh-HHHHHHHHHHHH
Q 026309 50 SEVVVFAKRTVRDLKLPP-QFITQIAQSIQT 79 (240)
Q Consensus 50 itpE~FA~~lc~Dl~lp~-~f~~~I~~sI~~ 79 (240)
-||+.||..+|.-|+=|. .++..|++.|-.
T Consensus 6 ~~~~~va~~ia~~L~E~k~~li~rvV~~lG~ 36 (104)
T 2xc7_A 6 DSQEKVADEISFRLQEPKKDLIARVVRIIGN 36 (104)
T ss_dssp CCHHHHHHHHHHHTTCTTHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 489999999999999997 667777777744
No 10
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=21.31 E-value=79 Score=27.22 Aligned_cols=107 Identities=11% Similarity=0.218 Sum_probs=61.4
Q ss_pred eEEEeeeCCcEEEEEEEecCCCCCCCHHHHHHHHHHHc---CCCh-HHHHHHHHHHHHHHHHhhcccCCcc---cCCcee
Q 026309 26 IRLDIETEGQRYKDAFTWNPSDPDSEVVVFAKRTVRDL---KLPP-QFITQIAQSIQTQLTEFRSYEGQDM---YTAEKI 98 (240)
Q Consensus 26 IrLd~e~~~~klrD~F~WNlne~~itpE~FA~~lc~Dl---~lp~-~f~~~I~~sI~~Ql~ey~~~~~~~~---~~~e~~ 98 (240)
|+..+.-+||.+.=|=+=|+=-..++.+.+-.+.-++- .+|+ .+..++...++.-|.+-..-....+ ..++ .
T Consensus 27 vk~~ft~~sY~l~lTDL~~vW~E~l~~~~I~~Rak~lN~rl~i~~s~~~~~l~~ll~~aL~~~~~~~~~sls~~~~~~-~ 105 (235)
T 2qm4_A 27 AKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLLRPLLKDAAHPSEATFSCDCVAD-A 105 (235)
T ss_dssp EEEEEETTEEEEEEECSSCEEEEEECHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHCSCSCCCCEEEEEEETT-E
T ss_pred EEEEecCCcEEEEEEccchhceeecCHHHHHHHHHHhCcCCCCChhHhHHHHHHHHHHHHhcCCCCcceEEEecCCCC-c
Confidence 67777888887643322222233445555554443333 4565 5666666666654421110000000 1122 3
Q ss_pred eeeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHH
Q 026309 99 VPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCND 137 (240)
Q Consensus 99 vpI~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~~c~D 137 (240)
+.+++.+.+.+ + .|.|.++-...+|..|++.++.-
T Consensus 106 L~L~~~~~L~~--l--PlkW~fhL~~~~~s~l~~~LilP 140 (235)
T 2qm4_A 106 LILRVRSELSG--L--PFYWNFHCMLASPSLVSQHLIRP 140 (235)
T ss_dssp EEEEEEEEETT--E--EEEEEEEEEECCHHHHHHHTHHH
T ss_pred EEEEEEEECCC--C--CEEEEEEEeeCCHHHHHHHHHHH
Confidence 44778888888 5 99999998889999998888764
No 11
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.06 E-value=1.5e+02 Score=27.09 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.8
Q ss_pred ceeeeeEEEEEeCCeeeeeceeecCCCCCCCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 026309 96 EKIVPIKLDLRVNHTLIKDHFLWDLNNYESDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (240)
Q Consensus 96 e~~vpI~Ldi~~~~~~l~D~FeWdL~~~~~tPE~FA~~~c~DLgL~~~ef~~aIa~aIreQl 157 (240)
++-..+.+||.-|+-.+. .-.|.++ .|-.=|+.+|.+.+|| ..|..+|+.-|.+..
T Consensus 31 ~yDyvf~vdi~~g~~~~k--lpyN~~~---np~~~A~~F~~~~~l~-~~y~~~i~~fi~~n~ 86 (362)
T 3l3f_X 31 TYDYVFDVDIEDGKPPLK--LPINVSD---NPYTAADNFLARYELP-MSYRDQVVQFILKNT 86 (362)
T ss_dssp EESEEEEECCSTTSCCEE--EEECTTS---CHHHHHHHHHHHTTCC-GGGHHHHHHHHHHHC
T ss_pred ccceEEEEEcCCCCcccc--CCCcCCC---CHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcC
Confidence 344456666665554443 4556654 8999999999999999 699999998886654
Done!