Query 026309
Match_columns 240
No_of_seqs 184 out of 380
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aisb2 a.74.1.2 (B:1206-1300) 69.7 1.6 0.00011 30.2 3.1 35 50-85 1-35 (95)
2 d1aisb2 a.74.1.2 (B:1206-1300) 60.4 3.2 0.00023 28.5 3.2 17 125-141 1-17 (95)
3 d1vola2 a.74.1.2 (A:208-316) T 59.4 3.2 0.00023 29.3 3.1 36 49-85 1-36 (109)
4 d1vola2 a.74.1.2 (A:208-316) T 45.4 7.2 0.00052 27.3 3.1 31 125-157 2-32 (109)
5 d1e0ea_ a.4.10.1 (A:) N-termin 31.7 21 0.0016 21.7 3.3 21 56-76 19-39 (46)
6 d1f46a_ d.129.4.1 (A:) Cell-di 27.6 13 0.00098 27.3 2.1 33 54-86 98-136 (139)
7 d1k6ya1 a.4.10.1 (A:1-46) N-te 27.2 25 0.0018 21.5 3.0 21 56-76 19-39 (46)
8 d2p6va1 a.277.1.1 (A:582-678) 26.7 21 0.0015 25.3 2.8 24 44-67 44-67 (97)
9 d2pp4a1 a.277.1.1 (A:119-225) 19.7 31 0.0023 24.7 2.6 23 45-67 37-59 (107)
10 d2p6va1 a.277.1.1 (A:582-678) 18.7 29 0.0021 24.4 2.2 27 119-145 44-70 (97)
No 1
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=69.73 E-value=1.6 Score=30.21 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026309 50 SEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (240)
Q Consensus 50 itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ey~ 85 (240)
|.|+.|...+|..|+||..+.. .+..|-.++.+..
T Consensus 1 i~P~d~I~R~~~~L~L~~~i~~-~A~~i~~~~~~~~ 35 (95)
T d1aisb2 1 VKPTDYVNKFADELGLSEKVRR-RAIEILDEAYKRG 35 (95)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHH-HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCcCHHHHH-HHHHHHHHHHHcC
Confidence 6899999999999999986543 4445555555543
No 2
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=60.40 E-value=3.2 Score=28.51 Aligned_cols=17 Identities=18% Similarity=0.786 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHcCCC
Q 026309 125 SDPEEFARTFCNDMGIE 141 (240)
Q Consensus 125 ~tPE~FA~~~c~DLgL~ 141 (240)
+.|++|-..+|..||||
T Consensus 1 i~P~d~I~R~~~~L~L~ 17 (95)
T d1aisb2 1 VKPTDYVNKFADELGLS 17 (95)
T ss_dssp CCGGGGHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHcCcC
Confidence 47999999999999998
No 3
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.42 E-value=3.2 Score=29.34 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhh
Q 026309 49 DSEVVVFAKRTVRDLKLPPQFITQIAQSIQTQLTEFR 85 (240)
Q Consensus 49 ~itpE~FA~~lc~Dl~lp~~f~~~I~~sI~~Ql~ey~ 85 (240)
.|||..|...+|..|+||... ..-|..|-+++.+..
T Consensus 1 ~i~~~d~i~Rf~s~L~L~~~i-~~~A~~i~~~~~~~~ 36 (109)
T d1vola2 1 LITTGDFMSRFCSNLCLPKQV-QMAATHIARKAVELD 36 (109)
T ss_dssp CCCGGGTHHHHHHHHTCCHHH-HHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCcCHHH-HHHHHHHHHHHHHcC
Confidence 489999999999999999854 334555555555543
No 4
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.39 E-value=7.2 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Q 026309 125 SDPEEFARTFCNDMGIEDPEVGPAVAFAIREQL 157 (240)
Q Consensus 125 ~tPE~FA~~~c~DLgL~~~ef~~aIa~aIreQl 157 (240)
++|..|-..+|..||||. -+..-|..|...+
T Consensus 2 i~~~d~i~Rf~s~L~L~~--~i~~~A~~i~~~~ 32 (109)
T d1vola2 2 ITTGDFMSRFCSNLCLPK--QVQMAATHIARKA 32 (109)
T ss_dssp CCGGGTHHHHHHHHTCCH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCcCH--HHHHHHHHHHHHH
Confidence 689999999999999983 2333444444443
No 5
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=31.72 E-value=21 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=17.7
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 026309 56 AKRTVRDLKLPPQFITQIAQS 76 (240)
Q Consensus 56 A~~lc~Dl~lp~~f~~~I~~s 76 (240)
+..|..+++||.....+|+++
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~ 39 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNS 39 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 567999999999888888764
No 6
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.63 E-value=13 Score=27.27 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHhhc
Q 026309 54 VFAKRTVRDLKLP------PQFITQIAQSIQTQLTEFRS 86 (240)
Q Consensus 54 ~FA~~lc~Dl~lp------~~f~~~I~~sI~~Ql~ey~~ 86 (240)
.+|+.+|++|+-- ..+-.+-...||+||.+|..
T Consensus 98 ~~a~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~e~ 136 (139)
T d1f46a_ 98 QSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKD 136 (139)
T ss_dssp HHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5689999999862 15677778899999999975
No 7
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=27.24 E-value=25 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.5
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 026309 56 AKRTVRDLKLPPQFITQIAQS 76 (240)
Q Consensus 56 A~~lc~Dl~lp~~f~~~I~~s 76 (240)
+..|+..++||.....+|+++
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~ 39 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVAS 39 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 568999999999888888764
No 8
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.70 E-value=21 Score=25.26 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.7
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCh
Q 026309 44 NPSDPDSEVVVFAKRTVRDLKLPP 67 (240)
Q Consensus 44 Nlne~~itpE~FA~~lc~Dl~lp~ 67 (240)
|+-+..++||+|...|=+.+..|+
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~p 67 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSP 67 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCC
Confidence 344678999999999999999975
No 9
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.70 E-value=31 Score=24.69 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=20.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCh
Q 026309 45 PSDPDSEVVVFAKRTVRDLKLPP 67 (240)
Q Consensus 45 lne~~itpE~FA~~lc~Dl~lp~ 67 (240)
+-+..+|+|+|...|=+.+..|+
T Consensus 37 L~~~~i~~EeF~~~Lq~~lns~p 59 (107)
T d2pp4a1 37 LVNSTLTIEEFHSKLQEATNFPL 59 (107)
T ss_dssp HHTTCSCHHHHHHHHHHHHCCCC
T ss_pred HHhCCcCHHHHHHHHHHHhcCCC
Confidence 44678999999999999999975
No 10
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.72 E-value=29 Score=24.43 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=22.1
Q ss_pred cCCCCCCCHHHHHHHHHHHcCCCCCCh
Q 026309 119 DLNNYESDPEEFARTFCNDMGIEDPEV 145 (240)
Q Consensus 119 dL~~~~~tPE~FA~~~c~DLgL~~~ef 145 (240)
+|.+..++||+|...+=..|..+.+.|
T Consensus 44 ~L~~~~i~~EEF~~~Lq~~lns~pqP~ 70 (97)
T d2p6va1 44 NLLDGKIEAEDFTSRLYRELNSSPQPY 70 (97)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCCCCTT
T ss_pred HHHhCCcCHHHHHHHHHHHhcCCCCch
Confidence 444567999999999999999986554
Done!