Query 026310
Match_columns 240
No_of_seqs 155 out of 1371
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 7.1E-42 1.5E-46 297.5 22.9 202 32-239 63-282 (365)
2 KOG0697 Protein phosphatase 1B 100.0 4.9E-41 1.1E-45 271.9 15.7 214 20-239 7-243 (379)
3 PF00481 PP2C: Protein phospha 100.0 1.5E-40 3.2E-45 278.6 14.7 200 35-239 1-214 (254)
4 KOG0698 Serine/threonine prote 100.0 4.3E-39 9.4E-44 278.3 22.7 205 33-239 38-256 (330)
5 PTZ00224 protein phosphatase 2 100.0 1.7E-38 3.7E-43 277.3 24.2 204 18-238 5-221 (381)
6 COG0631 PTC1 Serine/threonine 100.0 3.1E-38 6.7E-43 264.8 16.4 193 32-239 6-208 (262)
7 KOG0699 Serine/threonine prote 100.0 3.1E-35 6.6E-40 246.0 14.6 215 18-239 5-449 (542)
8 smart00332 PP2Cc Serine/threon 100.0 6.8E-33 1.5E-37 231.4 23.2 198 33-239 5-211 (255)
9 cd00143 PP2Cc Serine/threonine 100.0 5.9E-33 1.3E-37 231.3 22.7 197 35-239 2-208 (254)
10 PRK14559 putative protein seri 100.0 6E-33 1.3E-37 255.0 19.5 195 33-238 374-585 (645)
11 KOG0700 Protein phosphatase 2C 100.0 1.5E-31 3.2E-36 228.1 15.8 176 62-239 96-343 (390)
12 KOG1323 Serine/threonine phosp 99.9 9E-24 2E-28 175.7 15.9 179 61-239 140-421 (493)
13 PF13672 PP2C_2: Protein phosp 99.8 2.6E-20 5.7E-25 151.7 14.3 164 40-238 4-179 (212)
14 KOG1379 Serine/threonine prote 99.8 6.5E-19 1.4E-23 146.4 16.8 160 47-238 89-258 (330)
15 KOG0618 Serine/threonine phosp 99.7 9.5E-18 2.1E-22 155.8 11.0 207 24-239 512-728 (1081)
16 smart00331 PP2C_SIG Sigma fact 99.7 8.2E-16 1.8E-20 123.3 16.6 156 34-239 4-162 (193)
17 TIGR02865 spore_II_E stage II 99.2 2.8E-10 6E-15 108.5 14.9 143 48-239 566-710 (764)
18 PF07228 SpoIIE: Stage II spor 99.1 2.8E-09 6.1E-14 85.2 13.0 129 63-239 2-137 (193)
19 COG2208 RsbU Serine phosphatas 97.1 0.024 5.2E-07 50.0 14.4 141 48-240 161-310 (367)
20 PRK10693 response regulator of 86.4 6.5 0.00014 33.7 9.2 92 63-159 161-259 (303)
21 PF09436 DUF2016: Domain of un 63.2 5.2 0.00011 26.6 1.6 16 222-237 23-38 (72)
22 COG0796 MurI Glutamate racemas 32.4 67 0.0014 27.2 3.9 54 67-120 7-67 (269)
23 TIGR00067 glut_race glutamate 31.2 49 0.0011 27.6 2.9 50 68-117 1-57 (251)
24 PRK00865 glutamate racemase; P 30.0 1E+02 0.0023 25.7 4.7 52 67-118 7-65 (261)
25 PF05785 CNF1: Rho-activating 26.1 81 0.0017 26.8 3.3 22 126-149 132-153 (281)
26 COG2168 DsrH Uncharacterized c 21.5 61 0.0013 22.8 1.4 15 222-237 22-36 (96)
27 TIGR02276 beta_rpt_yvtn 40-res 21.4 1.6E+02 0.0034 16.1 3.3 18 138-155 3-20 (42)
28 KOG0641 WD40 repeat protein [G 20.5 5.1E+02 0.011 21.6 7.1 33 136-168 240-274 (350)
29 PF01436 NHL: NHL repeat; Int 20.3 1.5E+02 0.0032 15.3 3.7 19 136-154 10-28 (28)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=7.1e-42 Score=297.52 Aligned_cols=202 Identities=35% Similarity=0.562 Sum_probs=171.4
Q ss_pred CcceeEEEeecCCCCCCCCceeEeeeccC--------CCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCcccHHH
Q 026310 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQE--------KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTES 103 (240)
Q Consensus 32 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~ 103 (240)
+.+.++.+|++|.|+ .|||++++..... ...+..+|+|||||||+.+++++++.+...+.+...+...+.+
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 456889999999877 9999987632211 1234689999999999999999999999999876655556788
Q ss_pred HHHHHHHHHHHHHHHHhccc-CCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHHHHHHcCC
Q 026310 104 AIRRAYHMTDTKILEQAFVL-GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGG 180 (240)
Q Consensus 104 ~l~~~~~~~~~~l~~~~~~~-~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ri~~~gg 180 (240)
+|.++|..+++.+.+..... ...+|||++++++.++++|++||||||+|+++++++.+||+||++.+ |+.||.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 99999999999987754332 34589999999998999999999999999999999999999999998 8999999999
Q ss_pred eEecCCCCCCccCCceecccccCCCCCCC-------CeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 181 FVSNIPGDVPRVDGQLAVARAFGDKSLKI-------HLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ltr~lG~~~~k~-------~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
.+.. .++++.+.+||+|||..+|. .++++|++..+++.++++|||||||||||+
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdv 282 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDV 282 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccC
Confidence 8863 36778888999999987753 478999999999998878899999999996
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-41 Score=271.87 Aligned_cols=214 Identities=32% Similarity=0.497 Sum_probs=184.9
Q ss_pred ccCCCCCcccCC-CcceeEEEeecCCCCCCCCceeEeeec-cCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCC
Q 026310 20 ALDTGKGKSKMS-KHITHGYHLVKGKSNHAMEDYLVSEFK-QEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF 97 (240)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~s~~G~r~~~neD~~~~~~~-~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~ 97 (240)
+|.|.+.-.... +.+.||.+|+||+|- +|||++.+... ...-.++.+|+|||||.|+++|.+++.++++.+.+..++
T Consensus 7 KPkteKhn~~G~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F 85 (379)
T KOG0697|consen 7 KPKTEKHNAEGEGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEF 85 (379)
T ss_pred CcccccccccCcCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHH
Confidence 455544333322 689999999999999 99999975432 345688999999999999999999999999999876554
Q ss_pred cc--------cHHHHHHHHHHHHHHHHHHHhccc--CCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCC
Q 026310 98 WT--------DTESAIRRAYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHE 167 (240)
Q Consensus 98 ~~--------~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~ 167 (240)
.. +..+.|+..|.++++.++...... ...+|||++++++...++|++|+||||++++|+|++..-|+||.
T Consensus 86 ~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHK 165 (379)
T KOG0697|consen 86 RGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHK 165 (379)
T ss_pred hhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCC
Confidence 43 678899999999999888765443 24488999999999999999999999999999999999999999
Q ss_pred Cch--HHHHHHHcCCeEecCCCCCCccCCceecccccCCCCCCC---------CeeccceEEEEEeCCCCeEEEEeeCcc
Q 026310 168 PSK--EKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGI 236 (240)
Q Consensus 168 ~~~--e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~k~---------~i~~~p~i~~~~l~~~~d~liL~SDGl 236 (240)
|.. |++||..+||.+-. .++||.++++|+|||+.||. .|+++|+|........++||||++|||
T Consensus 166 P~~p~EkeRIqnAGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGI 240 (379)
T KOG0697|consen 166 PYLPKEKERIQNAGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGI 240 (379)
T ss_pred CCChHHHHHHhcCCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccch
Confidence 998 99999999998873 68999999999999999986 499999999999998889999999999
Q ss_pred ccc
Q 026310 237 WKV 239 (240)
Q Consensus 237 ~d~ 239 (240)
|||
T Consensus 241 wDV 243 (379)
T KOG0697|consen 241 WDV 243 (379)
T ss_pred hhh
Confidence 997
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.5e-40 Score=278.56 Aligned_cols=200 Identities=40% Similarity=0.595 Sum_probs=161.4
Q ss_pred eeEEEeecCCCCCCCCceeEeeeccC---CCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHH
Q 026310 35 THGYHLVKGKSNHAMEDYLVSEFKQE---KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT--DTESAIRRAY 109 (240)
Q Consensus 35 ~~~~~s~~G~r~~~neD~~~~~~~~~---~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 109 (240)
.+|+.+.+|.|. .|||++++..... ...+..+|+|||||||..++++++..+...+.+...... .+.++|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999 9999998755432 456789999999999999999999999876654433222 5889999999
Q ss_pred HH-HHHHHHHHhcc-cCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCcee-eCCCCCCCch--HHHHHHHcCCeEec
Q 026310 110 HM-TDTKILEQAFV-LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAK-QLSVDHEPSK--EKRLIESRGGFVSN 184 (240)
Q Consensus 110 ~~-~~~~l~~~~~~-~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~-~lt~dH~~~~--e~~ri~~~gg~~~~ 184 (240)
.. +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||+||++.+ |+.||.+.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888873322 33567888888888899999999999999999999888 9999999998 99999999999884
Q ss_pred CCCCCCccCCceecccccCCCCCCC----CeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 185 IPGDVPRVDGQLAVARAFGDKSLKI----HLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 185 ~~~~~~~~~~~~~ltr~lG~~~~k~----~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
..++++.+++||+|||..+|+ +|+++|++..+.+.++++|||||||||||+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~ 214 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDV 214 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTT
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEccccccc
Confidence 357888899999999999998 999999999999999866999999999996
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-39 Score=278.30 Aligned_cols=205 Identities=46% Similarity=0.688 Sum_probs=172.4
Q ss_pred cce-eEEEeecCCCCCCCCceeEeeec----cCCCC-ceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCccc---HHH
Q 026310 33 HIT-HGYHLVKGKSNHAMEDYLVSEFK----QEKDN-ELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTD---TES 103 (240)
Q Consensus 33 ~~~-~~~~s~~G~r~~~neD~~~~~~~----~~~~~-~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~---~~~ 103 (240)
... .+.++.+|+|+ .|||++..... ..... ...+|||||||||..+|+++.++++..+.+....... ...
T Consensus 38 ~~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~ 116 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKD 116 (330)
T ss_pred cccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Confidence 344 44557888888 99999986443 22333 5899999999999999999999999999988776653 789
Q ss_pred HHHHHHH-HHHHHHHHHhcccCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCC-ceeeCCCCCCCch--HHHHHHHcC
Q 026310 104 AIRRAYH-MTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNG-VAKQLSVDHEPSK--EKRLIESRG 179 (240)
Q Consensus 104 ~l~~~~~-~~~~~l~~~~~~~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g-~~~~lt~dH~~~~--e~~ri~~~g 179 (240)
+++++|. .++..+.+........|+|++++++.++.++|+||+||||+++++.| ...+||.||+|.. |+.||..+|
T Consensus 117 a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 117 ALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 9999999 59999987622224556666666666566999999999999999765 8999999999976 999999999
Q ss_pred CeEecCCCCCCccCCceecccccCCCCCC-CCeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 180 GFVSNIPGDVPRVDGQLAVARAFGDKSLK-IHLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 180 g~~~~~~~~~~~~~~~~~ltr~lG~~~~k-~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
|++..... ..+++|.++++|+|||..+| ..++++|++....+++.++||||+||||||+
T Consensus 197 G~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv 256 (330)
T KOG0698|consen 197 GRVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDV 256 (330)
T ss_pred CEEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcc
Confidence 99996554 46999999999999999999 8999999999999999889999999999997
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.7e-38 Score=277.29 Aligned_cols=204 Identities=31% Similarity=0.497 Sum_probs=162.2
Q ss_pred ccccCCCCCccc-CCCcceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCC
Q 026310 18 TSALDTGKGKSK-MSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPD 96 (240)
Q Consensus 18 ~~~~~~~~~~~~-~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~ 96 (240)
.+.|..++..+. ....+.+|..+++|.|+ .|||++++.. ..+..+|+|||||||.++|+++++.+...+.....
T Consensus 5 l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~ 79 (381)
T PTZ00224 5 LPKPVLSKLVDRAGNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPE 79 (381)
T ss_pred CCCCccccccccCCCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccc
Confidence 345555554443 33679999999999988 9999987522 23457999999999999999999999876654322
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHhcccCCCcceeEEEEE-EeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHH
Q 026310 97 FWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAIL-INGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKR 173 (240)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~Tt~~~~~-i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ 173 (240)
. ...+.|++++..+|+.+.+... . +|||+++++ ..+++++++||||||+|++++|++++||+||++.+ |+.
T Consensus 80 ~--~~~~~l~~a~~~~d~~i~~~~~---~-~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~ 153 (381)
T PTZ00224 80 P--MTDERMEELCLEIDEEWMDSGR---E-GGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQ 153 (381)
T ss_pred c--ccHHHHHHHHHHHHHHHHhccc---C-CCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHh
Confidence 1 1235688999999999986442 2 345555444 44689999999999999999999999999999998 899
Q ss_pred HHHHcCCeEecCCCCCCccCCceecccccCCCCCCC---------CeeccceEEEEEeCCCCeEEEEeeCcccc
Q 026310 174 LIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWK 238 (240)
Q Consensus 174 ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~k~---------~i~~~p~i~~~~l~~~~d~liL~SDGl~d 238 (240)
||.+.||.+.. .++++.+.+||+||+..+|. .|+++|++..+.+.++ |+||||||||||
T Consensus 154 RI~~~gg~v~~-----~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d 221 (381)
T PTZ00224 154 RIEACGGRVVS-----NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFE 221 (381)
T ss_pred HHHHccCEecc-----ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCc
Confidence 99999998873 36788899999999976553 4678999999999886 899999999998
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-38 Score=264.82 Aligned_cols=193 Identities=30% Similarity=0.401 Sum_probs=157.9
Q ss_pred CcceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCC---C-ccc--HHHHH
Q 026310 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPD---F-WTD--TESAI 105 (240)
Q Consensus 32 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~---~-~~~--~~~~l 105 (240)
..+.++..++.|..++.|||++.+.....+.. ..+++|||||||+++++++++.++..+.+... . ... ..+.+
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 46778888899988889999999765333333 67999999999999999999888877754421 1 111 67999
Q ss_pred HHHHHHHHHHHHHHhc--ccCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHHHHHHcCCe
Q 026310 106 RRAYHMTDTKILEQAF--VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGF 181 (240)
Q Consensus 106 ~~~~~~~~~~l~~~~~--~~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ri~~~gg~ 181 (240)
.+.+..+++.+..... ....++|||++++++.++++|+|||||||+|++++|+++|||.||++.+ ++.++..
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~---- 160 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIIT---- 160 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCC----
Confidence 9999999999998875 2347899999999999999999999999999999999999999999998 3332222
Q ss_pred EecCCCCCCccCCceecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 182 VSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 182 ~~~~~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
+.+...++..+.+||+||+.. ..+|++...++.++ |++|||||||||+
T Consensus 161 ----~~~~~~~~~~~~ltralG~~~-----~~~p~~~~~~~~~~-d~llL~SDGl~d~ 208 (262)
T COG0631 161 ----PEEARSHPRRNALTRALGDFD-----LLEPDITELELEPG-DFLLLCSDGLWDV 208 (262)
T ss_pred ----HHHHHhCccchhhhhhcCCCc-----ccceeEEEEEcCCC-CEEEEECCCCccC
Confidence 222233456679999999998 58999999999998 9999999999985
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-35 Score=245.98 Aligned_cols=215 Identities=34% Similarity=0.519 Sum_probs=181.8
Q ss_pred ccccCCCCCcccCC-CcceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCC
Q 026310 18 TSALDTGKGKSKMS-KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPD 96 (240)
Q Consensus 18 ~~~~~~~~~~~~~~-~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~ 96 (240)
.|.|.+.+.+.... .-+.||++++||+|. .+||++-+.... ..++.+|+|+|||||.++|.|++..++..|.+...
T Consensus 5 Ls~P~t~K~s~dg~g~lL~yg~s~MQGWRv-sqEDAHNci~~l--d~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k~ 81 (542)
T KOG0699|consen 5 LSKPITEKESEDGSGNLLSYGCSTMQGWRV-SQEDAHNCIVDL--DTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERKF 81 (542)
T ss_pred ccCCccccccccccCccchhchhhhhcccc-chhhhhcccccc--cCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHHh
Confidence 45666666555544 347899999999999 999999765443 46779999999999999999999999888865544
Q ss_pred Ccc-cHHHHHHHHHHHHHHHHHHHh-------------------------------------------------------
Q 026310 97 FWT-DTESAIRRAYHMTDTKILEQA------------------------------------------------------- 120 (240)
Q Consensus 97 ~~~-~~~~~l~~~~~~~~~~l~~~~------------------------------------------------------- 120 (240)
+.. ++..+|+.+|...+..|....
T Consensus 82 yk~g~~~~aL~~AFl~fD~~l~~ee~~keLk~iag~~~~k~~~aeaDd~deed~a~l~EEa~~pl~ElL~rY~G~~~hK~ 161 (542)
T KOG0699|consen 82 YKAGDVAEALQKAFLDFDDFLRAEESMKELKDIAGEGKPKKAGAEADDEDEEDRADLIEEASVPLAELLKRYGGAGVHKS 161 (542)
T ss_pred hhcccHHHHHHHHHhchhhhhcCHHHHHHHHHHcCCCCcccccccccccchHHHHHHHHhccCcHHHHHHHhcCCCcccc
Confidence 333 577888888887777664322
Q ss_pred --------------------------------------------------------------------------------
Q 026310 121 -------------------------------------------------------------------------------- 120 (240)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (240)
T Consensus 162 ~~sp~~~~g~~s~e~~~~~~~~~eA~p~dst~~~ps~~~~p~A~A~~~~~s~~d~~te~g~~k~~g~~~g~~g~~~~S~s 241 (542)
T KOG0699|consen 162 LLSPFLAKGDVSDESEDEDEDEEEAEPQDSTEREPSENEDPMASAEVVIESAEDKETEEGSPKKKGQKRGQKGHPIQSES 241 (542)
T ss_pred ccChhhhccCCccCCCcccccccccCCCCccccCcccccCCcccceeccccccccccccCCCCCCCcccccCCCcchhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 026310 121 -------------------------------------------------------------------------------- 120 (240)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (240)
T Consensus 242 ~Kl~q~sKsef~fE~~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e~e~ddEE~~e~~map~~~~~~ 321 (542)
T KOG0699|consen 242 KKLNQSSKSEFDFETAPSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAEDEQDDEEMVEGSMAPLLLGSG 321 (542)
T ss_pred hhcccccccccccccCCCcccccccccccccccccCCcccccccchhcccccccccccccccchhhhhhhcccccccccc
Confidence
Q ss_pred --cccCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHHHHHHcCCeEecCCCCCCccCCce
Q 026310 121 --FVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSNIPGDVPRVDGQL 196 (240)
Q Consensus 121 --~~~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ri~~~gg~~~~~~~~~~~~~~~~ 196 (240)
...+..+|||++++++.+++|||||.||||+++.|+|+..-||.||.|.. |..||..+||.++- ..+++|.+
T Consensus 322 g~EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGL 397 (542)
T KOG0699|consen 322 GAEEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGL 397 (542)
T ss_pred cCcCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCcc
Confidence 22245569999999999999999999999999999999999999999998 99999999999983 37999999
Q ss_pred ecccccCCCCCCC---------CeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 197 AVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 197 ~ltr~lG~~~~k~---------~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
+|+|+|||..||. .|++.|+|....|+|.++|+|+++||||++
T Consensus 398 NLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~ 449 (542)
T KOG0699|consen 398 NLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNS 449 (542)
T ss_pred chhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhh
Confidence 9999999999997 389999999999999999999999999985
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=6.8e-33 Score=231.43 Aligned_cols=198 Identities=43% Similarity=0.649 Sum_probs=167.2
Q ss_pred cceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCc----ccHHHHHHHH
Q 026310 33 HITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW----TDTESAIRRA 108 (240)
Q Consensus 33 ~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 108 (240)
.+.+++.+.+|.|. .|||++++.... ..+..+++|||||||..+|.++++.+.+.+....... ..+.+.|.++
T Consensus 5 ~~~~~~~~~~~~r~-~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGVRK-PMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCCCC-CCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 46777777777777 999999864321 2567899999999999999999999998887654333 2477889999
Q ss_pred HHHHHHHHHHHhccc--CCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHHHHHHcCCeEec
Q 026310 109 YHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSN 184 (240)
Q Consensus 109 ~~~~~~~l~~~~~~~--~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ri~~~gg~~~~ 184 (240)
+..+++.+....... ...++||++++++..++++++|+||||+|+++++++.++|.||++.+ |..|+...++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 999999998876543 25689999999999999999999999999999999999999999987 88999999887763
Q ss_pred CCCCCCccCCceecccccCCCCCCCCeeccceEEEEEe-CCCCeEEEEeeCccccc
Q 026310 185 IPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMI-TDDTEFIILASDGIWKV 239 (240)
Q Consensus 185 ~~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l-~~~~d~liL~SDGl~d~ 239 (240)
.++++.+.+||++|+..+|+.+..+|++...++ .+ +|+||||||||||.
T Consensus 162 -----~~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~-~d~ill~SDGv~~~ 211 (255)
T smart00332 162 -----GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEK-DDFLILASDGLWDV 211 (255)
T ss_pred -----CeECCeEecccccCCHhhcCCeEeeeEEEEEEecCC-CcEEEEECCccccC
Confidence 256677899999999999999999999999997 55 49999999999984
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.9e-33 Score=231.26 Aligned_cols=197 Identities=44% Similarity=0.644 Sum_probs=164.1
Q ss_pred eeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHH
Q 026310 35 THGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF-----WTDTESAIRRAY 109 (240)
Q Consensus 35 ~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 109 (240)
.++..+..|.|. .|||++++...... .+..+|+|||||||+..++++++.+...+.+.... ...+...|+.+|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 467777888888 99999986432111 26789999999999999999999888887665432 345678899999
Q ss_pred HHHHHHHHHHhcc--cCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCch--HHHHHHHcCCeEecC
Q 026310 110 HMTDTKILEQAFV--LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSNI 185 (240)
Q Consensus 110 ~~~~~~l~~~~~~--~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~--e~~ri~~~gg~~~~~ 185 (240)
..+++.+...... ....++||++++++..++++++|+||||+|++++++++++|.||++.+ |+.|+...++++.
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-- 157 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-- 157 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE--
Confidence 9999999887643 235678889888888999999999999999999999999999999996 8889999888764
Q ss_pred CCCCCccCCceecccccCCCCCCCCeeccceEEEEEe-CCCCeEEEEeeCccccc
Q 026310 186 PGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMI-TDDTEFIILASDGIWKV 239 (240)
Q Consensus 186 ~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l-~~~~d~liL~SDGl~d~ 239 (240)
....++++.+||+||+..+|+.+..+|++..+.+ .++ |+||||||||||.
T Consensus 158 ---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~~ 208 (254)
T cd00143 158 ---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWDV 208 (254)
T ss_pred ---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCeec
Confidence 1356677899999999988888899999999999 554 9999999999985
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=6e-33 Score=255.03 Aligned_cols=195 Identities=24% Similarity=0.329 Sum_probs=143.6
Q ss_pred cceeEEEeecCCCCCCCCceeEeeecc----CC-C---CceEEEEEecCCChHHHHHHHHHHHHHH----HHcCCCCccc
Q 026310 33 HITHGYHLVKGKSNHAMEDYLVSEFKQ----EK-D---NELGLFAIFDGHLGHDVANYLQTHLFDN----ILKEPDFWTD 100 (240)
Q Consensus 33 ~~~~~~~s~~G~r~~~neD~~~~~~~~----~~-~---~~~~l~~V~DG~GG~~~a~~~~~~~~~~----~~~~~~~~~~ 100 (240)
.+.++..|++|.+++.|||++.+.... .+ . ....+|+|||||||+..++.+++.+++. +.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999998666999998653211 00 1 1357999999999887655555444443 3322111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc----CCCcceeEEEEEEeCCEEEEEEccceeEEEE-eCCceeeCCCCCCCchHHHHH
Q 026310 101 TESAIRRAYHMTDTKILEQAFVL----GKGGSTAVTAILINGQKLVVANVGDSRAVIS-KNGVAKQLSVDHEPSKEKRLI 175 (240)
Q Consensus 101 ~~~~l~~~~~~~~~~l~~~~~~~----~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~-~~g~~~~lt~dH~~~~e~~ri 175 (240)
..+.+++++..+|+.|.+..... ...+|||++++++.++++|++||||||+|++ ++|+++|||+||++.++ +
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---E 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---H
Confidence 45779999999999998754322 3468999999999999999999999999998 57899999999998873 2
Q ss_pred HHcCCeEecCCCCCCccCCceecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCcccc
Q 026310 176 ESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWK 238 (240)
Q Consensus 176 ~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d 238 (240)
.+.| +. +.+...+++.+.+||+||+...+ ..+|++..+.+.++ |+||||||||||
T Consensus 531 v~~G--i~--~~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~g-D~lLLCSDGL~D 585 (645)
T PRK14559 531 IQRG--VE--PQIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEED-TLLLLCSDGLSD 585 (645)
T ss_pred HHhC--CC--HHHHhcCcccceeeeccCCCCCC---cccceEEEEEcCCC-CEEEEECCCCCC
Confidence 3333 22 22333456678999999986533 36899999999886 999999999998
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-31 Score=228.05 Aligned_cols=176 Identities=39% Similarity=0.546 Sum_probs=142.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHHHHHHc------------CC----------------------CCcccHHHHHHH
Q 026310 62 DNELGLFAIFDGHLGHDVANYLQTHLFDNILK------------EP----------------------DFWTDTESAIRR 107 (240)
Q Consensus 62 ~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~------------~~----------------------~~~~~~~~~l~~ 107 (240)
.++..|+||||||||.++++++++++..++.. .. .....+.++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 67789999999999999999999999887751 10 114567899999
Q ss_pred HHHHHHHHHHHHhccc------CCCcceeEEEEEEeCCEEEEEEccceeEEEEe---CC---ceeeCCCCCCCch--HHH
Q 026310 108 AYHMTDTKILEQAFVL------GKGGSTAVTAILINGQKLVVANVGDSRAVISK---NG---VAKQLSVDHEPSK--EKR 173 (240)
Q Consensus 108 ~~~~~~~~l~~~~~~~------~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~---~g---~~~~lt~dH~~~~--e~~ 173 (240)
+|.++++.+....... .-.+|+++++.++.+..+||||+|||||+|.+ ++ ...|||.||+..+ |+.
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 9999999987544222 22345555555777999999999999999964 33 6799999999998 899
Q ss_pred HHHHcCC---eEecCCCCCCccCCceecccccCCCCCCC---------------------CeeccceEEEEEeCCCCeEE
Q 026310 174 LIESRGG---FVSNIPGDVPRVDGQLAVARAFGDKSLKI---------------------HLSSEPDVKVEMITDDTEFI 229 (240)
Q Consensus 174 ri~~~gg---~~~~~~~~~~~~~~~~~ltr~lG~~~~k~---------------------~i~~~p~i~~~~l~~~~d~l 229 (240)
||+..+. .+... ...|+.|.+++||+|||..||. +++++|.++.++|+|.+.||
T Consensus 256 Rir~eHPdd~~~vv~--~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFL 333 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVN--KHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFL 333 (390)
T ss_pred HHHHhCCCCcceEee--ccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEE
Confidence 9998865 22211 1148889999999999999886 59999999999999999999
Q ss_pred EEeeCccccc
Q 026310 230 ILASDGIWKV 239 (240)
Q Consensus 230 iL~SDGl~d~ 239 (240)
||+||||||.
T Consensus 334 IlASDGLwE~ 343 (390)
T KOG0700|consen 334 ILASDGLWEY 343 (390)
T ss_pred EEeccchhhh
Confidence 9999999985
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=9e-24 Score=175.67 Aligned_cols=179 Identities=30% Similarity=0.466 Sum_probs=134.3
Q ss_pred CCCceEEEEEecCCChHHHHHHHHHHHHHHHHcC-------------------------CC---------------Cccc
Q 026310 61 KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKE-------------------------PD---------------FWTD 100 (240)
Q Consensus 61 ~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~-------------------------~~---------------~~~~ 100 (240)
...++.+|.+||||.|..+|-.+++.+...+.+. .+ ...-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 3456799999999999987777766554433211 00 0012
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcceeEEEEEEeCCEEEEEEccceeEEEEeCCceeeCCCCCCCchHHHHHHHcC-
Q 026310 101 TESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRG- 179 (240)
Q Consensus 101 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~e~~ri~~~g- 179 (240)
+.-+|+.+|+.+++++..........||||+++++.-.+++|++|.||||++++|++++++||.+.+++.|++|++..+
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf 299 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAF 299 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhh
Confidence 4578999999999999887766666666666666666999999999999999999999999999999999999998763
Q ss_pred -------CeEecC------------------------------------------CCCCCccCCceecccccCCCCCC--
Q 026310 180 -------GFVSNI------------------------------------------PGDVPRVDGQLAVARAFGDKSLK-- 208 (240)
Q Consensus 180 -------g~~~~~------------------------------------------~~~~~~~~~~~~ltr~lG~~~~k-- 208 (240)
+..+.. .+...++-+.+.+||.|||..+|
T Consensus 300 ~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~ 379 (493)
T KOG1323|consen 300 RNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVV 379 (493)
T ss_pred cChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeee
Confidence 111110 01112233457889999998765
Q ss_pred -------CCeeccceEEEEEeCC----CCeEEEEeeCccccc
Q 026310 209 -------IHLSSEPDVKVEMITD----DTEFIILASDGIWKV 239 (240)
Q Consensus 209 -------~~i~~~p~i~~~~l~~----~~d~liL~SDGl~d~ 239 (240)
+.+++.|+|+...+.+ .+|.+||+|||+|||
T Consensus 380 dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDV 421 (493)
T KOG1323|consen 380 DSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDV 421 (493)
T ss_pred cCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhh
Confidence 4688999999998872 358999999999997
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.85 E-value=2.6e-20 Score=151.67 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=91.4
Q ss_pred eecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChH----HHHHHHHHHHHHHHHcCCCCcccH--HHHHHHHHHHHH
Q 026310 40 LVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGH----DVANYLQTHLFDNILKEPDFWTDT--ESAIRRAYHMTD 113 (240)
Q Consensus 40 s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~----~~a~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 113 (240)
++.|.+. .|||++.+.. ..+..+++||||+|+. .+|..+++.+...+.......... ...++.+...+.
T Consensus 4 sh~~~~~-~nqD~~~~~~----~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T PF13672_consen 4 SHRGRGA-PNQDAFGIRT----DDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEIL 78 (212)
T ss_dssp ---TTSS-S--EEEEEE-----TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCC-CCCCCEEeee----CCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 5778887 9999998422 2344677999999966 455556666666666555433322 222333333333
Q ss_pred HHH-----HHHhcccCCCcceeEEEEEEeCCEEEEEEccceeEEE-EeCCceeeCCCCCCCchHHHHHHHcCCeEecCCC
Q 026310 114 TKI-----LEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVI-SKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPG 187 (240)
Q Consensus 114 ~~l-----~~~~~~~~~~~~Tt~~~~~i~~~~l~~anvGDSr~~l-~~~g~~~~lt~dH~~~~e~~ri~~~gg~~~~~~~ 187 (240)
..+ ..........++||++++++.++.++++|+||||+|+ .++|++.+++.+|+.... .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~-----~---------- 143 (212)
T PF13672_consen 79 SIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP-----N---------- 143 (212)
T ss_dssp HHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH-----H----------
T ss_pred HHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh-----h----------
Confidence 221 1112333466799999999999999999999999965 589999999999972221 0
Q ss_pred CCCccCCceecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCcccc
Q 026310 188 DVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWK 238 (240)
Q Consensus 188 ~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d 238 (240)
. +..+.... .....++..+++.++ +.|+|||||||+
T Consensus 144 ---------~-~~~~~~~~----~~~~~~~~~~~~~~~-d~ilL~SDG~~~ 179 (212)
T PF13672_consen 144 ---------Q-TRSLTGDD----PEPDVQYGSIPLEEG-DVILLCSDGVWD 179 (212)
T ss_dssp ---------C-TTSCCHHC----CCTETEEEEEE--TT--EEEEE-HHHHT
T ss_pred ---------h-hhccCccc----cccCCeEEEEEcCCC-CEEEEECcCccc
Confidence 0 22222111 023346667777776 999999999996
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.82 E-value=6.5e-19 Score=146.36 Aligned_cols=160 Identities=21% Similarity=0.226 Sum_probs=101.3
Q ss_pred CCCCceeEeeeccCCCCceEEEEEecCCChHH--------HHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHH
Q 026310 47 HAMEDYLVSEFKQEKDNELGLFAIFDGHLGHD--------VANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDTKILE 118 (240)
Q Consensus 47 ~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 118 (240)
+..||++++. ......+.|||||+|||. .+..+.+.....+.+......++...|.+++.++ ..
T Consensus 89 ~~GEDa~Fvs----s~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~ 160 (330)
T KOG1379|consen 89 KGGEDAWFVS----SNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KS 160 (330)
T ss_pred CCCCcceeec----cCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHH----hh
Confidence 3689999873 335668999999999992 3333333333333333333346777776666544 33
Q ss_pred HhcccCCCcceeEEEEEEe--CCEEEEEEccceeEEEEeCCceeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCce
Q 026310 119 QAFVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQL 196 (240)
Q Consensus 119 ~~~~~~~~~~Tt~~~~~i~--~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~ 196 (240)
+. . ..-|++|++++.++ +++||+||+|||.+.++|+|++..-|..+... .+.|.+....+...
T Consensus 161 ~~-~-~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-------------FN~PyQLs~~p~~~ 225 (330)
T KOG1379|consen 161 QK-V-PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-------------FNTPYQLSSPPEGY 225 (330)
T ss_pred cC-C-CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-------------cCCceeeccCCccc
Confidence 21 1 13355555555555 78999999999999999999999988865411 11122221111111
Q ss_pred ecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCcccc
Q 026310 197 AVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWK 238 (240)
Q Consensus 197 ~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d 238 (240)
..+++|.. ...+...+.+.++ |.|||+||||||
T Consensus 226 --~~~~~d~p------~~ad~~~~~v~~G-DvIilATDGlfD 258 (330)
T KOG1379|consen 226 --SSYISDVP------DSADVTSFDVQKG-DVIILATDGLFD 258 (330)
T ss_pred --cccccCCc------cccceEEEeccCC-CEEEEecccccc
Confidence 22344443 4456889999997 999999999998
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=9.5e-18 Score=155.84 Aligned_cols=207 Identities=25% Similarity=0.356 Sum_probs=168.8
Q ss_pred CCCcccCCCcceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCcccHHH
Q 026310 24 GKGKSKMSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTES 103 (240)
Q Consensus 24 ~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~ 103 (240)
.++......-+.||++...|+|. .+--+.. .+.++-.+..+.|+++||-+..+..+.+...+.+.+.++.....+-.+
T Consensus 512 ~~d~~~n~~~~t~Gv~~~~gqrn-k~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~ 589 (1081)
T KOG0618|consen 512 TPDGNVNAFLWTYGVAGVSGQRN-KVCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETE 589 (1081)
T ss_pred CCccccceeheeeccchhccccc-chhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHH
Confidence 34444445667899999999999 4443332 223333456689999999999999999999999999887766666667
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcceeEEEEEEeC-------CEEEEEEccceeEEEEeCCceeeCCCCCCCc-h--HHH
Q 026310 104 AIRRAYHMTDTKILEQAFVLGKGGSTAVTAILING-------QKLVVANVGDSRAVISKNGVAKQLSVDHEPS-K--EKR 173 (240)
Q Consensus 104 ~l~~~~~~~~~~l~~~~~~~~~~~~Tt~~~~~i~~-------~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~-~--e~~ 173 (240)
.|+.+|...++++...+... |+..+++-+..+ .++++||+|+|.++++++|+..++|+-.... + |.+
T Consensus 590 ~mr~~fl~~~rklg~~g~~l---g~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~ 666 (1081)
T KOG0618|consen 590 QMRNTFLRLNRKLGEEGQVL---GGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYK 666 (1081)
T ss_pred HHHHHHHHHhhhhhhhhccc---cchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHH
Confidence 79999999999997666543 555555555433 3799999999999999999999998865444 2 999
Q ss_pred HHHHcCCeEecCCCCCCccCCceecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 174 LIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 174 ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
||...+|++.. ..+++|....||++|...+.|+|.+.|+|....+++.+++||+++.+||++
T Consensus 667 RI~~~~g~i~e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~ 728 (1081)
T KOG0618|consen 667 RIVDSKGFITE----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSV 728 (1081)
T ss_pred HHHHhcCeecC----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhh
Confidence 99999999993 468999999999999999999999999999999999999999999999986
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.71 E-value=8.2e-16 Score=123.35 Aligned_cols=156 Identities=16% Similarity=0.077 Sum_probs=106.9
Q ss_pred ceeEEEeecCCCCCCCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 026310 34 ITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTD 113 (240)
Q Consensus 34 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (240)
+.++.....+.. ..-|.+.+... .++..+++|+||+|+...|.+++..+...+.+...... .+.+.+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 344444444443 47788864222 34468999999999888888877777776654433222 2556677778
Q ss_pred HHHHHHhcccCCCcceeEEEEEE--eCCEEEEEEccceeEEEEe-CCceeeCCCCCCCchHHHHHHHcCCeEecCCCCCC
Q 026310 114 TKILEQAFVLGKGGSTAVTAILI--NGQKLVVANVGDSRAVISK-NGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVP 190 (240)
Q Consensus 114 ~~l~~~~~~~~~~~~Tt~~~~~i--~~~~l~~anvGDSr~~l~~-~g~~~~lt~dH~~~~e~~ri~~~gg~~~~~~~~~~ 190 (240)
+.+.... ....++|++++++ ..++++++|+||+|+|+++ ++...+.+.+.
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 8877652 2345677777766 5789999999999999998 55554555432
Q ss_pred ccCCceecccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 191 RVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 191 ~~~~~~~ltr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
++.+|... ...++...+++.++ |.|+|+||||||.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e~ 162 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEPG-DLLLLYTDGLTEA 162 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCCC-CEEEEECCCcccc
Confidence 33566443 34577788889997 9999999999985
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.22 E-value=2.8e-10 Score=108.55 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=94.0
Q ss_pred CCCceeEeeeccCCCCceEEEEEecCCChHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 026310 48 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLGKGG 127 (240)
Q Consensus 48 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 127 (240)
.+.|.+.+... .++..+++|+||+|+...|...+..+.+.+.+......+ ...++..+|..+..... ...
T Consensus 566 vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~~ 635 (764)
T TIGR02865 566 VSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DEK 635 (764)
T ss_pred ccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CCe
Confidence 78999864221 345578999999996655554444443333211111111 35567777777754321 234
Q ss_pred ceeEEEEEEe--CCEEEEEEccceeEEEEeCCceeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCceecccccCCC
Q 026310 128 STAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDK 205 (240)
Q Consensus 128 ~Tt~~~~~i~--~~~l~~anvGDSr~~l~~~g~~~~lt~dH~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~ 205 (240)
.+|+.+++++ .+++.++|+|+++.|+.+++.+.+++..+.| +|-.
T Consensus 636 faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP---------------------------------lGil 682 (764)
T TIGR02865 636 FSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP---------------------------------IGIL 682 (764)
T ss_pred EEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce---------------------------------eEec
Confidence 6777777764 6899999999999999999988887653321 2221
Q ss_pred CCCCCeeccceEEEEEeCCCCeEEEEeeCccccc
Q 026310 206 SLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 206 ~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
. ..+++....++.++ |.|+|+|||+||.
T Consensus 683 ~-----~~~~~~~~~~L~~G-D~Lll~SDGv~E~ 710 (764)
T TIGR02865 683 D-----EVDVELVRKKLKNG-DLIVMVSDGVLEG 710 (764)
T ss_pred c-----CCccceEEEEeCCC-CEEEEECCCCCcC
Confidence 1 24567778889997 9999999999985
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.09 E-value=2.8e-09 Score=85.16 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=78.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHHH---HHHHHcCCCCcccHHHHHHHHHHHHHHHHHHHhcccCCCcceeEEEEEE--e
Q 026310 63 NELGLFAIFDGHLGHDVANYLQTHL---FDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILI--N 137 (240)
Q Consensus 63 ~~~~l~~V~DG~GG~~~a~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~Tt~~~~~i--~ 137 (240)
++..+++|+|+.|..-.|...+..+ +..+..... . ..+.+..+|+.+....... ...+|++++.+ .
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~---~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~ 72 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL---D----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPE 72 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT---S----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC---C----HHHHHHHHHHHHHHHhhhc--cccceEEEEEeccc
Confidence 4568999999988544444433333 333332221 1 5666777788775544322 23455555554 3
Q ss_pred CCEEEEEEccceeEEEEeCC--ceeeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCceecccccCCCCCCCCeeccc
Q 026310 138 GQKLVVANVGDSRAVISKNG--VAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEP 215 (240)
Q Consensus 138 ~~~l~~anvGDSr~~l~~~g--~~~~lt~dH~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~k~~i~~~p 215 (240)
.++++++|+|++++++++++ ....+.... -.+|-.. ...+
T Consensus 73 ~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~---------------------------------~~lG~~~-----~~~~ 114 (193)
T PF07228_consen 73 TGTLTYANAGHPPPLLLRPGGREIEQLESEG---------------------------------PPLGIFE-----DIDY 114 (193)
T ss_dssp TTEEEEEEESSSEEEEEETTCTEEEEETCSS---------------------------------BBCSSSC-----TTCE
T ss_pred ceEEEEeCCCCCCEEEEeccccceeecccCc---------------------------------cceeeec-----cccc
Confidence 57899999999999999983 332222211 1245332 2445
Q ss_pred eEEEEEeCCCCeEEEEeeCccccc
Q 026310 216 DVKVEMITDDTEFIILASDGIWKV 239 (240)
Q Consensus 216 ~i~~~~l~~~~d~liL~SDGl~d~ 239 (240)
....+++.++ |.|+|+||||+|.
T Consensus 115 ~~~~~~l~~g-d~l~l~TDGl~e~ 137 (193)
T PF07228_consen 115 QEQEIQLEPG-DRLLLYTDGLFEA 137 (193)
T ss_dssp EEEEEE--TT-EEEEEECHHHCTT
T ss_pred cceEEEeccc-cEEEEeCCChhhc
Confidence 6667888887 9999999999984
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.08 E-value=0.024 Score=50.05 Aligned_cols=141 Identities=15% Similarity=0.072 Sum_probs=83.5
Q ss_pred CCCceeEeeeccCCCCceEEEEEecCCC-hHHHHHHHHHHH---HHHHHcCCCCcccHHHHHHHHHHHHHHHHHHHhccc
Q 026310 48 AMEDYLVSEFKQEKDNELGLFAIFDGHL-GHDVANYLQTHL---FDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVL 123 (240)
Q Consensus 48 ~neD~~~~~~~~~~~~~~~l~~V~DG~G-G~~~a~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 123 (240)
..=|+|-+... ......++|+|..| |-.+|-. .... ...+.... ...+ ...+..+|+.++......
T Consensus 161 vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~--~~~p----~~~l~~~n~~~~~~~~~~ 230 (367)
T COG2208 161 VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESG--PLDP----ADVLETLNRVLKQNLEED 230 (367)
T ss_pred cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcc--cCCH----HHHHHHHHHHHHhcccCC
Confidence 34566643221 23578999999888 4443333 2222 22222221 1222 334555566666544322
Q ss_pred CCCcceeEEEEEEe--CCEEEEEEccceeEEEEeCCce---eeCCCCCCCchHHHHHHHcCCeEecCCCCCCccCCceec
Q 026310 124 GKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVA---KQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAV 198 (240)
Q Consensus 124 ~~~~~Tt~~~~~i~--~~~l~~anvGDSr~~l~~~g~~---~~lt~dH~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~l 198 (240)
.-+|+...+++ .+.+.++|+|---.++++.+.. ..+. ..
T Consensus 231 ---~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------~~ 274 (367)
T COG2208 231 ---MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------AL 274 (367)
T ss_pred ---cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc---------------------------------CC
Confidence 55666666654 5789999999999888876432 2211 23
Q ss_pred ccccCCCCCCCCeeccceEEEEEeCCCCeEEEEeeCcccccC
Q 026310 199 ARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVR 240 (240)
Q Consensus 199 tr~lG~~~~k~~i~~~p~i~~~~l~~~~d~liL~SDGl~d~~ 240 (240)
...+|-.. -..+.+....+.++ |.++|.|||+.|++
T Consensus 275 g~piG~~~-----~~~~~~~~~~l~~g-d~lvl~tDGv~Ea~ 310 (367)
T COG2208 275 GLPIGLLP-----DYQYEVASLQLEPG-DLLVLYTDGVTEAR 310 (367)
T ss_pred CceeeecC-----CccchheeEEecCC-CEEEEEcCCeeeee
Confidence 34566544 45566778888885 99999999999853
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=86.41 E-value=6.5 Score=33.68 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=51.4
Q ss_pred CceEEEEEec--CCChHH-HHHHHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHHHHHHHHhcccCCCcceeEEEEEEe
Q 026310 63 NELGLFAIFD--GHLGHD-VANYLQTHLFDNILKEPD--FWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILIN 137 (240)
Q Consensus 63 ~~~~l~~V~D--G~GG~~-~a~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~Tt~~~~~i~ 137 (240)
++...|.++| |||++. .|......++..++.... ... ......+.+..+|+.+...... .. .|++..+++
T Consensus 161 ~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~-~~~~p~~~l~~lN~~l~~~~~~---~~-~t~~~~~~d 235 (303)
T PRK10693 161 DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQ-RLPELGALLKQVNHLLRQANLP---GQ-FPLLVGYYH 235 (303)
T ss_pred CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhccccc-ccCCHHHHHHHHHHHHHhcCCC---ce-eeEEEEEEE
Confidence 4557778888 888664 333444444554443311 000 0011455677778887765221 12 345444443
Q ss_pred --CCEEEEEEccceeEEEEeCCce
Q 026310 138 --GQKLVVANVGDSRAVISKNGVA 159 (240)
Q Consensus 138 --~~~l~~anvGDSr~~l~~~g~~ 159 (240)
.+++.++|.|-...++..++++
T Consensus 236 ~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 236 RELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred cCCCeEEEEeCCCCCEEecCCeEE
Confidence 4689999999999885444444
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=63.22 E-value=5.2 Score=26.62 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=12.7
Q ss_pred eCCCCeEEEEeeCccc
Q 026310 222 ITDDTEFIILASDGIW 237 (240)
Q Consensus 222 l~~~~d~liL~SDGl~ 237 (240)
+...+..+|+++||+|
T Consensus 23 l~~~G~Rllva~nGv~ 38 (72)
T PF09436_consen 23 LERPGHRLLVASNGVF 38 (72)
T ss_pred cccCCcEEEEecCcEE
Confidence 3434589999999998
No 22
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.44 E-value=67 Score=27.21 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=33.4
Q ss_pred EEEEec-CCChHHHHHHHHHHHHHHHH----c--CCCCcccHHHHHHHHHHHHHHHHHHHh
Q 026310 67 LFAIFD-GHLGHDVANYLQTHLFDNIL----K--EPDFWTDTESAIRRAYHMTDTKILEQA 120 (240)
Q Consensus 67 l~~V~D-G~GG~~~a~~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~~~~~~~l~~~~ 120 (240)
-++||| |+||--+.+.+.+.+.+.-+ + ..++.....+.+++...++-..|.+..
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 578999 89999999998888764432 1 123444344555555555555555443
No 23
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=31.20 E-value=49 Score=27.59 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=30.7
Q ss_pred EEEec-CCChHHHHHHHHHHHHHHHH------cCCCCcccHHHHHHHHHHHHHHHHH
Q 026310 68 FAIFD-GHLGHDVANYLQTHLFDNIL------KEPDFWTDTESAIRRAYHMTDTKIL 117 (240)
Q Consensus 68 ~~V~D-G~GG~~~a~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~l~ 117 (240)
.|||| |+||--+.+.+.+.+.+.-+ ...++.....+.+...+.+.-+.|.
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~ 57 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLK 57 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47899 89999999998888754321 1223444444555555555545554
No 24
>PRK00865 glutamate racemase; Provisional
Probab=30.01 E-value=1e+02 Score=25.68 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=31.9
Q ss_pred EEEEec-CCChHHHHHHHHHHHHHHHH------cCCCCcccHHHHHHHHHHHHHHHHHH
Q 026310 67 LFAIFD-GHLGHDVANYLQTHLFDNIL------KEPDFWTDTESAIRRAYHMTDTKILE 118 (240)
Q Consensus 67 l~~V~D-G~GG~~~a~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~l~~ 118 (240)
-+|||| |+||--+.+.+.+.+.+.-+ ...++.....+.+.....++-+.+.+
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~ 65 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLE 65 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 489999 89999999998888754421 12233333444555555554444543
No 25
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=26.07 E-value=81 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=15.6
Q ss_pred CcceeEEEEEEeCCEEEEEEccce
Q 026310 126 GGSTAVTAILINGQKLVVANVGDS 149 (240)
Q Consensus 126 ~~~Tt~~~~~i~~~~l~~anvGDS 149 (240)
.|||++++ +.++.+|..|+|-+
T Consensus 132 SGCT~i~A--~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 132 SGCTMIYA--RKDNYFYAYHTGKS 153 (281)
T ss_dssp SS-EEEEE--EETTEEEEEEEEES
T ss_pred CCCEEEEE--EcCCeEEEEEcCCC
Confidence 34454444 46999999999987
No 26
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=21.46 E-value=61 Score=22.82 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=12.1
Q ss_pred eCCCCeEEEEeeCccc
Q 026310 222 ITDDTEFIILASDGIW 237 (240)
Q Consensus 222 l~~~~d~liL~SDGl~ 237 (240)
++++ |.++|+.||++
T Consensus 22 l~~~-D~vlL~qdGV~ 36 (96)
T COG2168 22 LTEG-DAVLLLQDGVY 36 (96)
T ss_pred hccc-CeEEEEcccch
Confidence 4455 89999999986
No 27
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.43 E-value=1.6e+02 Score=16.12 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.3
Q ss_pred CCEEEEEEccceeEEEEe
Q 026310 138 GQKLVVANVGDSRAVISK 155 (240)
Q Consensus 138 ~~~l~~anvGDSr~~l~~ 155 (240)
++++|++|-|+-.+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567899998888887774
No 28
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.50 E-value=5.1e+02 Score=21.59 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=24.9
Q ss_pred EeCCEEEEEEccceeEEEE--eCCceeeCCCCCCC
Q 026310 136 INGQKLVVANVGDSRAVIS--KNGVAKQLSVDHEP 168 (240)
Q Consensus 136 i~~~~l~~anvGDSr~~l~--~~g~~~~lt~dH~~ 168 (240)
-..+++.+.---||-+.++ |.|...|.-..|+.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 3357777777778877665 78999988888874
No 29
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=20.30 E-value=1.5e+02 Score=15.29 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=15.3
Q ss_pred EeCCEEEEEEccceeEEEE
Q 026310 136 INGQKLVVANVGDSRAVIS 154 (240)
Q Consensus 136 i~~~~l~~anvGDSr~~l~ 154 (240)
..++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3689999999999887653
Done!