BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026311
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YDP|A Chain A, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|B Chain B, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|C Chain C, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
Length = 367
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 LGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151
G +P LC+ +S+ T++E+ + + WEFV S++ALGG
Sbjct: 97 FGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFV------SHVALGG 143
>pdb|2YDT|A Chain A, Structure Of The Alpha-L-Arabinofuranosidase Arb93a From
Fusarium Graminearum In Complexe With An Iminosugar
Inhibitor
Length = 367
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 LGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151
G +P LC+ +S+ T++E+ + + WEFV S++ALGG
Sbjct: 97 FGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFV------SHVALGG 143
>pdb|2W5N|A Chain A, Native Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum
Length = 367
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 LGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151
G +P LC+ +S+ T++E+ + + WEFV S++ALGG
Sbjct: 97 FGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFV------SHVALGG 143
>pdb|2W5O|A Chain A, Complex Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum With Arabinobiose
Length = 367
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 LGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151
G +P LC+ +S+ T++E+ + + WEFV S++ALGG
Sbjct: 97 FGKYPKGTVLCSGSSIPSDLSETLIEVYASRDKGYTWEFV------SHVALGG 143
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 55 TAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSS 90
T+ AQ+ + PN+ F E +I CV + ++ L+S
Sbjct: 205 TSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNS 240
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 72 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 128
Query: 71 DREK 74
DR++
Sbjct: 129 DRDE 132
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 47 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 103
Query: 71 DREK 74
DR++
Sbjct: 104 DRDE 107
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 47 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 103
Query: 71 DREK 74
DR++
Sbjct: 104 DRDE 107
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 44 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 100
Query: 71 DREK 74
DR++
Sbjct: 101 DRDE 104
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 44 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 100
Query: 71 DREK 74
DR++
Sbjct: 101 DRDE 104
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 46 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 102
Query: 71 DREK 74
DR++
Sbjct: 103 DRDE 106
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 46 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 102
Query: 71 DREK 74
DR++
Sbjct: 103 DRDE 106
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 46 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 102
Query: 71 DREK 74
DR++
Sbjct: 103 DRDE 106
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 12 LIFIIAWTFRLEK-VKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIF 70
L+ +I+W ++ V+LS L+ +V++L + C + + MGLM + + P+++
Sbjct: 52 LVHMISWAKKIPGFVELS-LFDQVRLLES--CWMEVLMMGLMWRSIDHPGKLIFAPDLVL 108
Query: 71 DREK 74
DR++
Sbjct: 109 DRDE 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,401,122
Number of Sequences: 62578
Number of extensions: 236629
Number of successful extensions: 699
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 26
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)