Query 026311
Match_columns 240
No_of_seqs 165 out of 1091
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2E-35 4.4E-40 263.0 19.7 234 2-238 107-349 (358)
2 PRK11453 O-acetylserine/cystei 100.0 2.4E-27 5.2E-32 206.9 17.4 199 2-221 89-292 (299)
3 PRK11689 aromatic amino acid e 99.9 2.5E-26 5.4E-31 200.2 15.0 198 3-221 95-292 (295)
4 PRK11272 putative DMT superfam 99.9 2.4E-25 5.1E-30 193.8 16.0 190 2-220 99-289 (292)
5 TIGR00817 tpt Tpt phosphate/ph 99.9 1E-24 2.2E-29 190.5 13.6 199 2-224 94-301 (302)
6 TIGR00950 2A78 Carboxylate/Ami 99.9 1.1E-23 2.3E-28 179.6 16.7 182 2-211 76-259 (260)
7 PRK10532 threonine and homoser 99.9 9.9E-24 2.1E-28 183.7 16.8 191 2-226 100-291 (293)
8 PRK15430 putative chlorampheni 99.9 5.9E-23 1.3E-27 179.1 14.5 184 2-217 102-286 (296)
9 TIGR03340 phn_DUF6 phosphonate 99.9 2.6E-22 5.5E-27 173.8 15.0 185 2-213 92-280 (281)
10 PF06027 DUF914: Eukaryotic pr 99.9 9.1E-21 2E-25 166.6 18.5 200 3-223 109-312 (334)
11 PTZ00343 triose or hexose phos 99.8 3.1E-20 6.8E-25 165.5 15.2 192 2-217 143-349 (350)
12 COG0697 RhaT Permeases of the 99.8 1.6E-18 3.5E-23 148.7 16.5 186 2-217 99-288 (292)
13 TIGR00688 rarD rarD protein. T 99.7 1.3E-16 2.7E-21 136.2 12.5 154 2-191 99-255 (256)
14 KOG2765 Predicted membrane pro 99.7 1.3E-15 2.9E-20 132.5 13.1 201 3-220 189-394 (416)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 2.6E-14 5.5E-19 124.4 13.8 185 8-216 95-288 (290)
16 COG5006 rhtA Threonine/homoser 99.6 4.9E-14 1.1E-18 117.1 14.3 166 35-221 121-287 (292)
17 KOG4510 Permease of the drug/m 99.6 4.2E-15 9.1E-20 124.3 6.8 202 2-218 126-327 (346)
18 PF00892 EamA: EamA-like trans 99.6 1.9E-14 4E-19 108.5 9.5 124 86-215 1-125 (126)
19 PF08449 UAA: UAA transporter 99.6 2.5E-13 5.5E-18 118.8 17.2 200 7-221 98-302 (303)
20 COG2510 Predicted membrane pro 99.5 6.5E-13 1.4E-17 99.6 13.2 134 78-215 5-138 (140)
21 COG2962 RarD Predicted permeas 99.4 3.2E-12 7E-17 108.6 15.1 182 6-219 105-286 (293)
22 KOG2766 Predicted membrane pro 99.3 1E-12 2.2E-17 109.5 5.3 180 13-218 118-301 (336)
23 TIGR03340 phn_DUF6 phosphonate 99.2 5E-10 1.1E-14 96.9 14.8 134 78-217 3-136 (281)
24 PRK15430 putative chlorampheni 99.2 4.5E-10 9.8E-15 98.0 14.2 140 73-216 5-145 (296)
25 PRK02971 4-amino-4-deoxy-L-ara 99.1 1.2E-09 2.6E-14 83.8 11.8 122 77-221 3-127 (129)
26 TIGR00688 rarD rarD protein. T 99.1 3.6E-09 7.9E-14 90.2 13.4 138 76-216 2-142 (256)
27 PF03151 TPT: Triose-phosphate 99.0 6.5E-09 1.4E-13 81.5 12.2 139 77-215 1-152 (153)
28 KOG1580 UDP-galactose transpor 99.0 1E-08 2.3E-13 84.8 13.2 192 9-217 121-314 (337)
29 KOG1441 Glucose-6-phosphate/ph 98.9 1.6E-09 3.4E-14 94.8 6.8 194 7-224 117-315 (316)
30 PF04142 Nuc_sug_transp: Nucle 98.9 7.2E-08 1.6E-12 82.0 14.3 191 6-206 50-243 (244)
31 PLN00411 nodulin MtN21 family 98.8 1.2E-07 2.6E-12 84.9 13.3 136 78-217 15-157 (358)
32 PF13536 EmrE: Multidrug resis 98.8 5.8E-08 1.3E-12 72.7 8.9 71 149-220 39-110 (113)
33 PRK11272 putative DMT superfam 98.7 4.6E-07 1E-11 78.8 14.0 131 78-217 10-142 (292)
34 TIGR00950 2A78 Carboxylate/Ami 98.7 3.1E-07 6.7E-12 78.0 11.9 118 88-216 1-119 (260)
35 PRK11453 O-acetylserine/cystei 98.6 7.7E-07 1.7E-11 77.7 13.4 125 78-216 6-132 (299)
36 PRK11689 aromatic amino acid e 98.6 6.2E-07 1.3E-11 78.2 12.4 131 76-217 4-138 (295)
37 KOG1581 UDP-galactose transpor 98.6 8.7E-07 1.9E-11 76.0 12.5 193 13-221 123-318 (327)
38 KOG1443 Predicted integral mem 98.6 5.6E-06 1.2E-10 71.2 16.1 182 7-214 118-313 (349)
39 TIGR00817 tpt Tpt phosphate/ph 98.5 2.2E-06 4.7E-11 74.9 13.6 119 91-214 17-135 (302)
40 KOG2234 Predicted UDP-galactos 98.5 1.4E-05 3E-10 70.2 18.0 194 9-221 128-327 (345)
41 PTZ00343 triose or hexose phos 98.5 2.8E-06 6.2E-11 75.9 13.6 123 90-215 63-185 (350)
42 PRK15051 4-amino-4-deoxy-L-ara 98.5 5.3E-07 1.1E-11 67.4 6.7 63 153-215 46-108 (111)
43 TIGR00803 nst UDP-galactose tr 98.4 8.2E-07 1.8E-11 74.2 8.1 198 5-213 10-221 (222)
44 KOG1444 Nucleotide-sugar trans 98.4 6.8E-06 1.5E-10 71.2 13.6 196 4-226 108-310 (314)
45 KOG1583 UDP-N-acetylglucosamin 98.4 1.4E-05 3.1E-10 67.9 14.4 193 7-215 99-313 (330)
46 KOG1442 GDP-fucose transporter 98.4 8.7E-07 1.9E-11 75.1 6.1 207 7-235 136-346 (347)
47 COG0697 RhaT Permeases of the 98.3 2.1E-05 4.5E-10 67.2 14.1 141 74-220 5-147 (292)
48 COG2962 RarD Predicted permeas 98.3 1.6E-05 3.4E-10 68.2 11.8 139 75-217 6-145 (293)
49 PF06800 Sugar_transport: Suga 98.2 3.9E-05 8.4E-10 65.8 13.4 178 11-213 84-268 (269)
50 TIGR00776 RhaT RhaT L-rhamnose 98.2 1.7E-05 3.6E-10 69.2 11.3 131 77-217 2-137 (290)
51 KOG1582 UDP-galactose transpor 98.2 1E-05 2.3E-10 68.6 9.4 173 31-218 158-334 (367)
52 PRK10452 multidrug efflux syst 98.2 8E-06 1.7E-10 61.7 7.2 67 153-219 39-106 (120)
53 KOG3912 Predicted integral mem 98.1 3E-05 6.5E-10 66.1 10.9 190 9-215 122-333 (372)
54 PF08449 UAA: UAA transporter 98.0 0.00011 2.4E-09 64.3 13.0 129 91-226 15-146 (303)
55 COG5070 VRG4 Nucleotide-sugar 98.0 1.9E-05 4.2E-10 65.3 6.1 152 74-227 153-307 (309)
56 PRK09541 emrE multidrug efflux 97.9 4.6E-05 9.9E-10 56.8 6.9 67 153-219 39-106 (110)
57 PF06027 DUF914: Eukaryotic pr 97.9 0.0003 6.5E-09 62.4 13.1 71 149-219 84-154 (334)
58 PRK10532 threonine and homoser 97.9 0.00029 6.2E-09 61.3 12.8 126 75-215 11-136 (293)
59 KOG4314 Predicted carbohydrate 97.9 0.00012 2.6E-09 59.6 9.2 190 2-220 82-280 (290)
60 PF05653 Mg_trans_NIPA: Magnes 97.9 6E-05 1.3E-09 66.0 8.2 64 153-216 222-292 (300)
61 PRK13499 rhamnose-proton sympo 97.7 0.0005 1.1E-08 61.1 10.8 140 74-219 5-156 (345)
62 PF04657 DUF606: Protein of un 97.7 0.001 2.2E-08 51.7 11.2 130 78-213 3-138 (138)
63 PF13536 EmrE: Multidrug resis 97.5 4.8E-05 1E-09 56.8 1.7 43 3-51 64-106 (113)
64 COG2076 EmrE Membrane transpor 97.5 0.0004 8.8E-09 51.1 6.2 66 153-218 39-105 (106)
65 PRK10650 multidrug efflux syst 97.5 0.0013 2.8E-08 48.9 8.9 63 153-215 44-107 (109)
66 PRK11431 multidrug efflux syst 97.4 0.00056 1.2E-08 50.5 6.4 64 153-216 38-102 (105)
67 KOG4510 Permease of the drug/m 97.4 0.00014 3E-09 61.8 3.4 134 75-218 37-171 (346)
68 PF06800 Sugar_transport: Suga 97.4 0.0031 6.6E-08 54.2 11.4 74 149-222 50-128 (269)
69 PRK13499 rhamnose-proton sympo 97.2 0.059 1.3E-06 48.1 18.4 198 11-217 112-342 (345)
70 PF05653 Mg_trans_NIPA: Magnes 97.2 0.00041 8.9E-09 60.8 4.4 120 73-218 4-124 (300)
71 PF00893 Multi_Drug_Res: Small 97.2 0.00079 1.7E-08 48.6 4.9 55 153-207 38-93 (93)
72 PF04142 Nuc_sug_transp: Nucle 97.1 0.00084 1.8E-08 57.1 5.3 70 155-224 28-97 (244)
73 COG3238 Uncharacterized protei 97.0 0.017 3.7E-07 45.2 11.6 137 76-216 5-146 (150)
74 KOG2922 Uncharacterized conser 96.8 0.0038 8.3E-08 54.4 6.7 198 3-216 94-306 (335)
75 PF00892 EamA: EamA-like trans 96.6 0.0012 2.6E-08 49.0 1.9 43 2-50 83-125 (126)
76 PRK15051 4-amino-4-deoxy-L-ara 96.3 0.0019 4.1E-08 48.2 1.4 40 5-50 69-108 (111)
77 KOG2765 Predicted membrane pro 95.9 0.0035 7.7E-08 55.7 1.5 79 154-239 169-247 (416)
78 COG4975 GlcU Putative glucose 95.8 0.0071 1.5E-07 51.0 2.7 129 77-216 3-136 (288)
79 KOG2234 Predicted UDP-galactos 95.4 0.04 8.8E-07 48.7 6.1 76 159-238 107-182 (345)
80 PF10639 UPF0546: Uncharacteri 94.8 0.089 1.9E-06 39.3 5.6 108 83-213 3-111 (113)
81 COG4975 GlcU Putative glucose 94.3 0.0041 9E-08 52.4 -2.7 133 71-214 147-283 (288)
82 PF06379 RhaT: L-rhamnose-prot 94.2 0.44 9.6E-06 42.2 9.4 143 73-220 4-157 (344)
83 KOG1441 Glucose-6-phosphate/ph 93.6 0.045 9.9E-07 48.2 2.2 123 75-201 15-140 (316)
84 KOG1580 UDP-galactose transpor 92.3 0.35 7.5E-06 40.8 5.6 129 86-223 23-164 (337)
85 KOG4314 Predicted carbohydrate 91.6 0.071 1.5E-06 43.7 0.7 61 157-217 66-126 (290)
86 KOG1443 Predicted integral mem 89.4 1.2 2.5E-05 39.1 6.2 69 151-219 91-159 (349)
87 PF04342 DUF486: Protein of un 88.9 0.41 8.9E-06 35.1 2.7 30 185-214 77-106 (108)
88 KOG2922 Uncharacterized conser 88.6 0.053 1.2E-06 47.5 -2.4 122 73-219 18-139 (335)
89 PRK02971 4-amino-4-deoxy-L-ara 87.9 0.27 5.8E-06 37.6 1.3 38 7-50 82-121 (129)
90 PF07857 DUF1632: CEO family ( 87.4 2.3 5E-05 36.4 6.8 47 78-126 2-48 (254)
91 COG3169 Uncharacterized protei 87.3 1.5 3.3E-05 31.7 4.7 33 184-216 83-115 (116)
92 PRK10452 multidrug efflux syst 87.2 0.54 1.2E-05 35.5 2.6 34 11-50 69-102 (120)
93 COG4657 RnfA Predicted NADH:ub 86.4 3.1 6.7E-05 33.0 6.4 93 12-121 77-182 (193)
94 COG2076 EmrE Membrane transpor 86.3 0.64 1.4E-05 34.3 2.4 34 11-50 69-102 (106)
95 PF01102 Glycophorin_A: Glycop 85.5 0.63 1.4E-05 35.2 2.1 38 202-239 75-113 (122)
96 PRK02237 hypothetical protein; 85.4 1.5 3.2E-05 32.3 4.0 38 182-219 71-108 (109)
97 PRK09541 emrE multidrug efflux 85.4 0.78 1.7E-05 34.1 2.6 34 11-50 69-102 (110)
98 PRK11431 multidrug efflux syst 85.2 0.8 1.7E-05 33.7 2.6 33 11-49 68-100 (105)
99 PRK10650 multidrug efflux syst 85.2 0.78 1.7E-05 34.0 2.5 33 11-49 74-106 (109)
100 PF02694 UPF0060: Uncharacteri 82.7 1.8 3.9E-05 31.8 3.4 38 182-219 69-106 (107)
101 KOG1444 Nucleotide-sugar trans 79.3 30 0.00066 30.5 10.4 114 93-214 29-147 (314)
102 PF05977 MFS_3: Transmembrane 78.9 41 0.00088 31.9 12.1 45 174-218 350-394 (524)
103 KOG1583 UDP-N-acetylglucosamin 71.9 3.6 7.9E-05 35.6 2.8 64 161-224 81-145 (330)
104 PRK10489 enterobactin exporter 71.5 75 0.0016 28.3 12.3 34 200-233 382-416 (417)
105 KOG3912 Predicted integral mem 69.5 5 0.00011 34.9 3.1 38 179-216 121-158 (372)
106 PF15102 TMEM154: TMEM154 prot 69.4 4.2 9.1E-05 31.7 2.4 24 204-227 69-92 (146)
107 COG1971 Predicted membrane pro 69.4 4.8 0.0001 32.8 2.9 54 174-227 44-98 (190)
108 PF04246 RseC_MucC: Positive r 69.0 3.6 7.8E-05 31.4 2.0 20 172-191 69-88 (135)
109 PF12606 RELT: Tumour necrosis 68.9 6.8 0.00015 24.8 2.9 23 206-228 13-35 (50)
110 PF10639 UPF0546: Uncharacteri 65.7 4.5 9.8E-05 30.2 1.9 36 8-49 77-112 (113)
111 PF00893 Multi_Drug_Res: Small 65.4 6.3 0.00014 28.1 2.6 28 8-41 65-92 (93)
112 TIGR02840 spore_YtaF putative 65.1 6.2 0.00013 32.6 2.8 45 171-215 34-80 (206)
113 COG3086 RseC Positive regulato 59.9 6.6 0.00014 30.5 1.9 21 171-191 75-95 (150)
114 KOG4831 Unnamed protein [Funct 57.6 34 0.00074 25.3 5.1 57 158-214 66-123 (125)
115 PRK13108 prolipoprotein diacyl 56.3 41 0.00088 31.4 6.8 24 196-219 254-277 (460)
116 PRK12437 prolipoprotein diacyl 55.5 11 0.00023 32.5 2.8 27 196-222 235-261 (269)
117 PRK11469 hypothetical protein; 54.9 12 0.00026 30.5 2.8 42 174-215 44-86 (188)
118 PF05297 Herpes_LMP1: Herpesvi 53.3 4.4 9.6E-05 35.1 0.0 26 154-179 118-143 (381)
119 PRK10862 SoxR reducing system 51.8 9.1 0.0002 30.1 1.6 17 174-190 78-94 (154)
120 PRK11010 ampG muropeptide tran 51.0 2.1E+02 0.0045 26.6 12.4 17 200-216 385-401 (491)
121 PF04306 DUF456: Protein of un 49.9 1.2E+02 0.0025 23.4 8.4 66 148-223 37-104 (140)
122 PF08611 DUF1774: Fungal prote 49.6 26 0.00056 25.4 3.4 14 227-240 84-97 (97)
123 PRK05122 major facilitator sup 48.1 1.9E+02 0.0042 25.4 12.1 34 183-216 354-387 (399)
124 COG1742 Uncharacterized conser 47.9 15 0.00032 26.9 2.0 37 183-219 71-107 (109)
125 PRK01637 hypothetical protein; 45.3 31 0.00067 29.8 4.0 38 198-235 248-285 (286)
126 TIGR01167 LPXTG_anchor LPXTG-m 43.0 38 0.00082 18.8 2.9 15 197-211 11-25 (34)
127 COG5006 rhtA Threonine/homoser 42.6 2.3E+02 0.0049 24.6 12.7 100 77-186 13-113 (292)
128 PF01914 MarC: MarC family int 42.5 28 0.0006 28.7 3.1 25 191-215 64-89 (203)
129 PRK11111 hypothetical protein; 42.5 31 0.00066 28.7 3.4 24 191-214 70-94 (214)
130 PF05961 Chordopox_A13L: Chord 39.4 42 0.00092 22.5 3.0 33 200-232 6-39 (68)
131 PRK00052 prolipoprotein diacyl 39.3 26 0.00055 30.2 2.5 25 196-220 237-261 (269)
132 COG0682 Lgt Prolipoprotein dia 39.1 30 0.00064 30.2 2.9 29 199-227 255-283 (287)
133 PF13194 DUF4010: Domain of un 39.0 44 0.00094 27.7 3.8 19 82-101 2-20 (211)
134 PRK12405 electron transport co 37.3 2.5E+02 0.0055 23.7 10.8 16 200-215 187-202 (231)
135 PF08507 COPI_assoc: COPI asso 37.1 76 0.0017 24.1 4.7 15 200-214 89-103 (136)
136 TIGR00544 lgt prolipoprotein d 37.0 1.1E+02 0.0023 26.5 6.0 24 196-219 246-269 (278)
137 CHL00196 psbY photosystem II p 36.7 49 0.0011 19.3 2.6 19 76-94 6-24 (36)
138 KOG1442 GDP-fucose transporter 36.6 19 0.0004 31.4 1.2 104 104-213 60-171 (347)
139 PF13038 DUF3899: Domain of un 36.4 36 0.00078 24.0 2.6 18 199-216 5-22 (92)
140 PRK15049 L-asparagine permease 36.1 3.7E+02 0.008 25.1 10.7 18 170-188 416-433 (499)
141 PRK10054 putative transporter; 36.0 3.1E+02 0.0068 24.3 11.4 28 75-103 44-71 (395)
142 PF11295 DUF3096: Protein of u 34.8 34 0.00075 20.3 1.8 32 181-212 1-32 (39)
143 PF07214 DUF1418: Protein of u 33.3 1.5E+02 0.0033 21.4 5.3 17 201-217 50-66 (96)
144 PF11755 DUF3311: Protein of u 33.3 1.4E+02 0.0031 19.8 4.9 40 177-216 3-51 (66)
145 PRK11902 ampG muropeptide tran 33.3 3.4E+02 0.0074 24.0 11.8 21 194-214 364-386 (402)
146 PF06379 RhaT: L-rhamnose-prot 32.8 3.7E+02 0.008 24.2 13.4 178 32-216 134-340 (344)
147 PF03595 SLAC1: Voltage-depend 32.1 2.7E+02 0.006 24.1 8.0 44 34-90 5-48 (330)
148 TIGR01943 rnfA electron transp 32.0 1.1E+02 0.0025 24.9 5.0 17 75-91 101-117 (190)
149 PF07444 Ycf66_N: Ycf66 protei 30.4 45 0.00098 23.5 2.2 29 194-222 3-31 (84)
150 TIGR00427 membrane protein, Ma 29.3 81 0.0018 25.9 3.9 24 191-214 67-91 (201)
151 PF06946 Phage_holin_5: Phage 29.2 2.2E+02 0.0048 20.4 6.4 42 148-190 9-50 (93)
152 PF02038 ATP1G1_PLM_MAT8: ATP1 29.0 51 0.0011 20.8 2.0 21 199-219 18-38 (50)
153 PRK05151 electron transport co 28.9 1.3E+02 0.0029 24.6 5.0 15 75-89 102-116 (193)
154 TIGR00897 2A0118 polyol permea 28.7 4.1E+02 0.009 23.5 12.5 28 75-103 49-76 (402)
155 PF06298 PsbY: Photosystem II 27.3 1.3E+02 0.0028 17.6 3.3 19 77-95 7-25 (36)
156 PF11381 DUF3185: Protein of u 27.2 26 0.00057 22.9 0.5 17 35-51 1-17 (59)
157 TIGR00304 conserved hypothetic 26.8 62 0.0014 22.4 2.3 17 201-217 8-24 (77)
158 PF08693 SKG6: Transmembrane a 26.3 54 0.0012 19.7 1.7 17 203-219 22-38 (40)
159 COG2034 Predicted membrane pro 26.3 88 0.0019 22.1 3.0 25 199-223 14-38 (85)
160 PF10951 DUF2776: Protein of u 26.1 66 0.0014 28.2 2.8 46 30-91 225-270 (347)
161 PF06166 DUF979: Protein of un 25.8 1.7E+02 0.0037 25.7 5.3 61 165-231 21-81 (308)
162 PRK13240 pbsY photosystem II p 25.7 92 0.002 18.7 2.6 18 77-94 7-24 (40)
163 PRK11195 lysophospholipid tran 25.6 4.7E+02 0.01 23.1 12.7 48 181-228 344-391 (393)
164 PRK12456 Na(+)-translocating N 25.6 1.7E+02 0.0037 24.1 5.1 16 75-90 109-124 (199)
165 PF07168 Ureide_permease: Urei 25.1 71 0.0015 28.2 2.9 131 82-215 2-145 (336)
166 PF15471 TMEM171: Transmembran 25.0 90 0.0019 27.0 3.4 20 198-217 161-180 (319)
167 PRK10655 potE putrescine trans 24.5 3E+02 0.0065 24.9 7.1 47 179-225 389-436 (438)
168 PRK01061 Na(+)-translocating N 24.4 1.8E+02 0.0039 24.7 5.1 32 10-41 94-126 (244)
169 KOG1581 UDP-galactose transpor 23.9 5.2E+02 0.011 23.0 11.3 73 149-221 88-160 (327)
170 TIGR00803 nst UDP-galactose tr 23.6 54 0.0012 26.8 1.9 43 176-218 10-52 (222)
171 PF07690 MFS_1: Major Facilita 23.4 4.5E+02 0.0097 22.0 12.1 18 86-103 43-60 (352)
172 PF10754 DUF2569: Protein of u 23.4 2.7E+02 0.0058 21.5 5.7 29 73-101 118-146 (149)
173 PRK15419 proline:sodium sympor 22.8 4.7E+02 0.01 24.4 8.2 16 201-216 456-471 (502)
174 TIGR01940 nqrE NADH:ubiquinone 22.5 2.8E+02 0.006 22.9 5.7 13 75-87 111-123 (200)
175 PRK02830 Na(+)-translocating N 22.4 2.2E+02 0.0048 23.5 5.2 17 75-91 112-128 (202)
176 PRK09705 cynX putative cyanate 22.1 5.5E+02 0.012 22.6 14.5 41 83-124 52-92 (393)
177 PF01040 UbiA: UbiA prenyltran 21.8 2E+02 0.0043 23.7 5.0 47 193-239 17-63 (257)
178 PF15108 TMEM37: Voltage-depen 21.3 3.2E+02 0.007 21.7 5.6 75 36-120 92-168 (184)
179 PF07843 DUF1634: Protein of u 21.2 83 0.0018 23.0 2.2 25 196-220 5-29 (105)
180 PRK10591 hypothetical protein; 21.1 3.2E+02 0.007 19.5 5.1 17 201-217 50-66 (92)
181 PF04277 OAD_gamma: Oxaloaceta 21.0 1.5E+02 0.0032 20.0 3.4 10 201-210 9-18 (79)
182 PF11044 TMEMspv1-c74-12: Plec 21.0 56 0.0012 20.0 1.0 15 197-211 3-17 (49)
183 PF09656 PGPGW: Putative trans 20.9 2.4E+02 0.0052 18.0 4.3 44 35-100 5-48 (53)
184 COG2056 Predicted permease [Ge 20.8 79 0.0017 28.7 2.3 19 73-91 54-72 (444)
185 PF11085 YqhR: Conserved membr 20.0 4.7E+02 0.01 21.0 10.8 79 134-214 62-149 (173)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=2e-35 Score=263.03 Aligned_cols=234 Identities=27% Similarity=0.494 Sum_probs=186.5
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCC-c------CCC-CccccCCc
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQET-S------VNT-PNIIFDRE 73 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~-~------~~~-~~~~~~~~ 73 (240)
|+++.+++|+|+++++++++.|+++.|+|.++.|++|+++|+.|+.++..++++.....+ + ++. .......+
T Consensus 107 asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (358)
T PLN00411 107 ASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSD 186 (358)
T ss_pred HHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCccc
Confidence 688999999999999999987888888888888999999999999988765443211000 0 000 00111223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CcccccccCchhHHHHHHHHHH
Q 026311 74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHK-LDFGWEFVGLPETMSYIALGGM 152 (240)
Q Consensus 74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~gi 152 (240)
+..|++++++|+++||+|++++||..+++|+....+++++.++++.+.+.++..++. .. .|...++.....+ +|.++
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i-~y~~i 264 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPS-VWIIHFDITLITI-VTMAI 264 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcc-cceeccchHHHHH-HHHHH
Confidence 467999999999999999999999988887667888899999988888877776542 22 3433333344555 78888
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESES 232 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~ 232 (240)
++.++|.+|+|++|+.||++++++.+++|++++++|++++||++++.+++|+++|+.|+++++++++||.|+++++||.+
T Consensus 265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~~~ 344 (358)
T PLN00411 265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFSGK 344 (358)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcccc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999988888887744
Q ss_pred ccCCCC
Q 026311 233 DAENPL 238 (240)
Q Consensus 233 ~~~~~~ 238 (240)
+. -|+
T Consensus 345 ~~-~~~ 349 (358)
T PLN00411 345 EK-TPL 349 (358)
T ss_pred cc-chh
Confidence 33 454
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=206.92 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=155.7
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+++.+++|+++.+++++++|||++.| +++|++++++|+.++.. ++. +..+....|+++.
T Consensus 89 a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~-------------~~~~~~~~G~~l~ 148 (299)
T PRK11453 89 ASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL-------------NGQHVAMLGFMLT 148 (299)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC-------------CCcchhHHHHHHH
Confidence 456788999999999999999998866 68999999999988752 110 0112234799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCc--hhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccccCchhHHHHHHHHHH-HHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPA--PMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~--~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
++++++|++|++++||..++.++ ....+.+++..+.+.....+...+++.. ..+.......+..+ +|+++ +|++
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~i~~t~~ 227 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSL-MYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHH-HHHHHHHHHH
Confidence 99999999999999998765432 3455667777776665555544443211 01211112345665 89999 9999
Q ss_pred HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
+|.+|++++|+.++++++.+.+++|++++++|++++||++++.+++|+++|++|+++..++++.+
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~~ 292 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRWR 292 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999988876533
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=2.5e-26 Score=200.21 Aligned_cols=198 Identities=15% Similarity=0.116 Sum_probs=145.5
Q ss_pred cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311 3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL 82 (240)
Q Consensus 3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (240)
+++.+++|+++.+++++++|||++++ |++|++++++|++++... +...+. ++ ...+..+...|+++.+
T Consensus 95 ~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--~~---~~~~~~~~~~G~~~~l 162 (295)
T PRK11689 95 GMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--AE---LINNIASNPLSYGLAF 162 (295)
T ss_pred HHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--hh---hhhccccChHHHHHHH
Confidence 46778999999999999999998865 689999999999887632 111000 00 0001012246999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311 83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNA 162 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~ 162 (240)
+|++|||+|+++.||..+++ ++... .+ ..+++.+.+.....+.... .++ + ..+..+ +|.+++++++|.+|+
T Consensus 163 ~aa~~~A~~~v~~k~~~~~~-~~~~~--~~-~~~~~~l~~~~~~~~~~~~-~~~--~-~~~~~l-~~~~~~t~~~~~l~~ 233 (295)
T PRK11689 163 IGAFIWAAYCNVTRKYARGK-NGITL--FF-ILTALALWIKYFLSPQPAM-VFS--L-PAIIKL-LLAAAAMGFGYAAWN 233 (295)
T ss_pred HHHHHHHHHHHHHhhccCCC-CchhH--HH-HHHHHHHHHHHHHhcCccc-cCC--H-HHHHHH-HHHHHHHHHHHHHHH
Confidence 99999999999999987765 45543 22 3333444443333222111 221 1 234454 676668899999999
Q ss_pred HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
+++|+.|+++++.+.+++|++++++|++++||++++.+++|+++|+.|+++..+.++++
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence 99999999999999999999999999999999999999999999999998887655433
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=2.4e-25 Score=193.77 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=154.4
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+++.++.|+++.+++++ +|||++++ +++|++++++|+.++... + . . +....|+++.
T Consensus 99 a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~-~-------------~-~~~~~G~l~~ 155 (292)
T PRK11272 99 AAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-G-N-------------L-SGNPWGAILI 155 (292)
T ss_pred HHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-c-c-------------c-ccchHHHHHH
Confidence 567889999999999986 58998865 689999999999877421 1 0 1 1234799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSF 160 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l 160 (240)
++++++||.|++..||..++ ++...+.+++..+++.+.+.....+.+.. .. .....+..+ +|+++ +|+++|.+
T Consensus 156 l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i-~~l~i~~s~~~~~l 229 (292)
T PRK11272 156 LIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT-AL--PTLSGFLAL-GYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc-cc--CCHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999987543 34667889999999888887765443211 11 111234555 79999 99999999
Q ss_pred HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311 161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++.+++++|
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998775553
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.92 E-value=1e-24 Score=190.49 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=151.1
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
++++.+++|+++.+++++++|||++++ +++|+++++.|+.+.. . + + . +....|+++.
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~-~-~-------------~-~~~~~G~~~~ 150 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D-T-E-------------L-SFNWAGFLSA 150 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C-C-c-------------c-cccHHHHHHH
Confidence 456788999999999999999998865 6799999999997643 1 1 0 1 1234699999
Q ss_pred HHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccc---cCch-hHHHHHHHHHH-
Q 026311 82 LAAVFVLSSTVVLQAATLG--DFPAPMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEF---VGLP-ETMSYIALGGM- 152 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~--~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~---~~~~-~~~~i~l~~gi- 152 (240)
++|+++|++|+++.||..+ ++ |+...+.+++..+++.++|++...|.... .++.. ..+. ..+...++.+.
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG 229 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence 9999999999999999877 56 58999999999999999999876653211 01110 0010 11111122222
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS 224 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 224 (240)
+....+.++++++++.||++++++.+++|++++++|++++||++++.+++|+++++.|+++.++.|.||+|+
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 222222455589999999999999999999999999999999999999999999999999998766655554
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=1.1e-23 Score=179.59 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=150.4
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
++++.++.|+++++++++++|||+++| +++|++++++|++++.. ++. .+....|+++.
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~---------------~~~~~~G~~~~ 133 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN---------------LSINPAGLLLG 133 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc---------------ccccHHHHHHH
Confidence 567888999999999999999998876 67999999999988752 211 12235799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQS 159 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~ 159 (240)
++++++|+.+.++.|+..++++ ++...+.+++..+++.+.+.....++... + ....+..+ ++.++ ++.++|.
T Consensus 134 l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~ 207 (260)
T TIGR00950 134 LGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ--A---LSLQWGAL-LYLGLIGTALAYF 207 (260)
T ss_pred HHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c---chHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999999999877653 23456667889998888888765443221 2 11234444 78899 9999999
Q ss_pred HHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHH
Q 026311 160 FNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGL 211 (240)
Q Consensus 160 l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv 211 (240)
+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus 208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999986
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.91 E-value=9.9e-24 Score=183.69 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=146.0
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+++.+++|+++.+++. ||.. +..++.+++.|+.++.. .+.+ .+.....|+++.
T Consensus 100 a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~~-------------~~~~~~~G~ll~ 153 (293)
T PRK10532 100 AVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQD-------------VSHVDLTGAALA 153 (293)
T ss_pred HHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCCC-------------cccCChHHHHHH
Confidence 45677889999987762 3321 34678889999987752 1211 111235799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSF 160 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l 160 (240)
++++++||+|+++.||..++++ +... .++.+++++.+.+.....+.. . .++. ..+... +|+|+ +|+++|.+
T Consensus 154 l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~-~~~~---~~~~~~-l~lgv~~t~~~~~l 225 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-A-LWHW---SILPLG-LAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-c-cCCH---HHHHHH-HHHHHHHHHHHHHH
Confidence 9999999999999999877764 5555 567777887777776653321 1 1211 123344 69999 99999999
Q ss_pred HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311 161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI 226 (240)
Q Consensus 161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~ 226 (240)
|++++|+.++++++.+.+++|+++.++|++++||++++.+++|+++|++|.+...+..+||.|-||
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998877666555443
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.90 E-value=5.9e-23 Score=179.06 Aligned_cols=184 Identities=9% Similarity=0.065 Sum_probs=135.5
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+++.+++|+++.+++++++|||+++| +++|+++++.|++++....+ +. ..+.
T Consensus 102 a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~-----------------~~----~~~~ 154 (296)
T PRK15430 102 ASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG-----------------SL----PIIA 154 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC-----------------Cc----cHHH
Confidence 567888999999999999999999876 67999999999988752111 11 1467
Q ss_pred HHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDF-PAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSF 160 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~-~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l 160 (240)
++++++||.|+++.||..++. .+....+.+++.++.....+.. +.+.. .+...+ ..+..++++.|+.+.++|.+
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTS-HMGQNP-MSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcc-cccCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988865321 1234455666666654432221 11111 121111 11223313344478899999
Q ss_pred HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 161 NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 161 ~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
|++++|+.||++++.+.+++|++++++|++++||++++.+++|+++|+.|+.+...+
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887776654
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=2.6e-22 Score=173.76 Aligned_cols=185 Identities=19% Similarity=0.175 Sum_probs=137.4
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
++.+.++.|+++.+++++++|||++++ +++|+.+++.|++++... +. . .....|+.+.
T Consensus 92 ~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~--------------~-~~~~~g~~~~ 149 (281)
T TIGR03340 92 VYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF--------------A-QHRRKAYAWA 149 (281)
T ss_pred hhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc--------------c-ccchhHHHHH
Confidence 456778999999999999999998876 679999999999887531 10 0 1123688899
Q ss_pred HHHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPA---PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVC 157 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~---~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia 157 (240)
++++++|++|+++.|+..++.++ ....+.+++..+++.+.+.....++. .+.. .+..++.+ +|.+. +++++
T Consensus 150 l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-~~~~~~~s~l~ 224 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR---SMFP-YARQILPS-ATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc---chhh-hHHHHHHH-HHHHHHHHHHH
Confidence 99999999999998876444321 12233344444333322222222221 1111 11123444 67888 99999
Q ss_pred HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311 158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY 213 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l 213 (240)
|.+|++++|+.|+++++.+.+++|+++.++|++++||++++.+++|+++|+.|+++
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.87 E-value=9.1e-21 Score=166.58 Aligned_cols=200 Identities=14% Similarity=0.240 Sum_probs=159.1
Q ss_pred cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311 3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL 82 (240)
Q Consensus 3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (240)
.++-+++-.++++++++++|||.++. |++|+++|+.|+++++..+.... ++...+++...||++++
T Consensus 109 ~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~--------~~~~~~~~~i~GDll~l 174 (334)
T PF06027_consen 109 QLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG--------SDSSSGSNPILGDLLAL 174 (334)
T ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc--------ccCCCCCccchhHHHHH
Confidence 45666778899999999999998865 78999999999998875442110 01123456789999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCC--cccccccCchhHHHHHHHHHH--HHHHHH
Q 026311 83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKL--DFGWEFVGLPETMSYIALGGM--INGVCQ 158 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~i~l~~gi--~t~ia~ 158 (240)
++++.||++++++++..|+.+ ......+..++|.++..+...+.|... +++|+ ..... .+.+. +..+-|
T Consensus 175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~----~~~~~--~~v~~~~~lf~~y 247 (334)
T PF06027_consen 175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT----SQVIG--LLVGYALCLFLFY 247 (334)
T ss_pred HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC----hhhHH--HHHHHHHHHHHHH
Confidence 999999999999999999875 778888888999999888887777532 12333 12222 23333 566777
Q ss_pred HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccc
Q 026311 159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENY 223 (240)
Q Consensus 159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~ 223 (240)
.+....++..+|+...+-.....+++++++++++|++++|..++|.++|++|+++.+..++++++
T Consensus 248 ~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 248 SLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 78899999999999999999999999999999999999999999999999999998876654443
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.84 E-value=3.1e-20 Score=165.52 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=149.9
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
+.++-+++|++++++++++++||+++| ++.|+++.++|+.+.+. + + .+ ....|+++.
T Consensus 143 ~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-------------~~-~~~~G~~~~ 199 (350)
T PTZ00343 143 THVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-------------LH-FTWLAFWCA 199 (350)
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-------------ch-hHHHHHHHH
Confidence 346678999999999999999999865 68999999999988752 1 1 11 235799999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC------chhHHHHHHHHHHHHHHHHHHHhhcCCC-cccccc---cC-chhHHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFP------APMSLCAITSLIGVFVTTVVELLQNHKL-DFGWEF---VG-LPETMSYIALG 150 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~------~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~~~~~~---~~-~~~~~~i~l~~ 150 (240)
++|+++|++|+++.||..++++ ++.....++...|++.++|+....|... ...|.. .. ...+..+ +|.
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-l~~ 278 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGII-IFK 278 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHH-HHH
Confidence 9999999999999999876532 2444556668899999999887665321 101110 00 1112233 454
Q ss_pred HHHHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 151 GMINGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 151 gi~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
.+.++++|.+|+. ++++.+|...++..++.|++++++|++++||++++.+++|+++++.|+++.++-
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 3388999999995 999999999999999999999999999999999999999999999999987653
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=148.72 Aligned_cols=186 Identities=19% Similarity=0.233 Sum_probs=141.5
Q ss_pred ccccCcchHHHHHHHHH-HHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCc-hHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAW-TFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDRE-KIIGCV 79 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~-~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~G~~ 79 (240)
++.+.++.|+++.++++ ++++||++++ ++.|+++++.|++++...++ .+.. ...|+.
T Consensus 99 ~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~---------------~~~~~~~~g~~ 157 (292)
T COG0697 99 ASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGG---------------GGGILSLLGLL 157 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCC---------------cchhHHHHHHH
Confidence 45678899999999997 6669998865 67999999999988863211 0111 468999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHH-HHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHH
Q 026311 80 YLLAAVFVLSSTVVLQAATLGDFPAPMSLCA-ITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVC 157 (240)
Q Consensus 80 l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~-~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia 157 (240)
+.+.++++|+++.+..|+.. +. ++..... +++. + ..+............ ... ...+..+ .+.|+ +++++
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~~---~~~~~~~-~~~g~~~~~i~ 228 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL-L-ALLLLLLFFLSGFGA-PIL---SRAWLLL-LYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH-H-HHHHHHHHHhccccc-cCC---HHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999877 44 3455555 4544 2 222222222211100 111 1123444 78889 88899
Q ss_pred HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
|.+|++++++.+++.++.+.+++|+++.+++++++||+++..+++|+++++.|+.+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999998766
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.71 E-value=1.3e-16 Score=136.23 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=107.2
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+++.+++|+|+++++++++|||+++| +++|+++++.|++++...++ +. ..+.
T Consensus 99 a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-----------------~~----~~~~ 151 (256)
T TIGR00688 99 VSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-----------------SL----PWEA 151 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-----------------Cc----hHHH
Confidence 567889999999999999999999876 67999999999987752111 11 1357
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH---hhcCCCcccccccCchhHHHHHHHHHHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVEL---LQNHKLDFGWEFVGLPETMSYIALGGMINGVCQ 158 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~ 158 (240)
++++++|+.|.+..||..++ +...... +.+.+.+... ...+... ......+..|..+ ++.|+.+.++|
T Consensus 152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~~g~~t~i~~ 222 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNT--DLAGFCL-----ETLSLMPVAIYYLLQTDFAT-VQQTNPFPIWLLL-VLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHH-----HHHHHHHHHHHHHHHhccCc-ccccCchhHHHHH-HHHHHHHHHHH
Confidence 88999999999999987543 2222211 1122222221 1111111 0011111234443 56666788999
Q ss_pred HHHHHHHhhcCceeeeechhHHHHHHHHHHHHH
Q 026311 159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAIT 191 (240)
Q Consensus 159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~ 191 (240)
.+|++++|+.++++++.+.|++|++++++|++.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
No 14
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.3e-15 Score=132.51 Aligned_cols=201 Identities=13% Similarity=0.198 Sum_probs=149.9
Q ss_pred cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHH
Q 026311 3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLL 82 (240)
Q Consensus 3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (240)
+++.+++-+||..++.++..||+++ .|.+++.+++.|+++++.++... .++....+...|+++.+
T Consensus 189 TilSStSs~FtL~la~if~~e~ft~------sKllav~~si~GViiVt~~~s~~---------~~~~~a~~~llG~llaL 253 (416)
T KOG2765|consen 189 TILSSTSSFFTLFLAAIFPVERFTL------SKLLAVFVSIAGVIIVTMGDSKQ---------NSDLPASRPLLGNLLAL 253 (416)
T ss_pred hhhhhcchHHHHHHHHHcCcchhhH------HHHHHHHHhhccEEEEEeccccc---------cccCCccchhHHHHHHH
Confidence 5677889999999999999999986 48999999999999887543211 11223345679999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHH---HHHHHHHHHHHHHHhhcCC-CcccccccCchhHHHHHHHHHH-HHHHH
Q 026311 83 AAVFVLSSTVVLQAATLGDFPAPMSLCAI---TSLIGVFVTTVVELLQNHK-LDFGWEFVGLPETMSYIALGGM-INGVC 157 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~---~~l~g~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~gi-~t~ia 157 (240)
++|+.||+|.++.||...+..+...+..+ ..++.-+++.|..++.+.. .. ..+.+.+.....+ ++.+. +|+++
T Consensus 254 ~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e-~F~lP~~~q~~~v-v~~~ligtvvS 331 (416)
T KOG2765|consen 254 LSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEE-RFELPSSTQFSLV-VFNNLIGTVVS 331 (416)
T ss_pred HHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccC-cccCCCCceeEee-eHhhHHHHHHH
Confidence 99999999999999876554223333222 2333334444443332210 01 2222222233333 67888 99999
Q ss_pred HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311 158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
-++|.|+.-...|..+.+-+.++...|++.+.++-|.++++.+++|.+.|++|.++++.....
T Consensus 332 DylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 332 DYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 999999999999999999999999999999999999999999999999999999999876543
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.59 E-value=2.6e-14 Score=124.45 Aligned_cols=185 Identities=14% Similarity=0.093 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccC-CchHHHHHHHHHHHH
Q 026311 8 LAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFD-REKIIGCVYLLAAVF 86 (240)
Q Consensus 8 ~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~G~~l~l~aa~ 86 (240)
+.|++..+.+.+++|||.+.|++ ....+|+++.+.|++++...+.... .+.+ .+...|.++.+++++
T Consensus 95 ~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~----------~~~~~~~~~~Gi~~~l~sg~ 162 (290)
T TIGR00776 95 FQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA----------GIKSEFNFKKGILLLLMSTI 162 (290)
T ss_pred HHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc----------ccccccchhhHHHHHHHHHH
Confidence 67888899999999999876521 1228899999999988753221100 0000 233579999999999
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHH---HHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 026311 87 VLSSTVVLQAATLGDFPAPMSLCAIT---SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAW 163 (240)
Q Consensus 87 ~~a~~~vl~~~~~~~~~~~~~~~~~~---~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~ 163 (240)
+|+.|.+..|+. ++ ++...+..| ++++++...+.. ... . ++. .+..+..+ + .|+.++++|.+|..
T Consensus 163 ~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~--~-~~~--~~~~~~~~-~-~Gi~~~ia~~~y~~ 230 (290)
T TIGR00776 163 GYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILA--K-PLK--KYAILLNI-L-PGLMWGIGNFFYLF 230 (290)
T ss_pred HHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hcc--c-chH--HHHHHHHH-H-HHHHHHHHHHHHHH
Confidence 999999998875 35 477774444 444444333322 111 1 221 11223343 3 66667999999999
Q ss_pred HHh-hcCceeeeechhHHHHHHHHHHHHHhCCCccchhh----HHHHHHHHHHHHHhh
Q 026311 164 AIK-KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSL----SGMFLMFAGLYYVLW 216 (240)
Q Consensus 164 al~-~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~i----iG~~lIl~Gv~l~~~ 216 (240)
+.+ +.+++.++...+++|+.+++++++++||+.+..++ +|.++|+.|+.+...
T Consensus 231 ~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 231 SAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999 99999999999999999999999999999999999 999999999988654
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.58 E-value=4.9e-14 Score=117.06 Aligned_cols=166 Identities=11% Similarity=0.018 Sum_probs=129.1
Q ss_pred hhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH
Q 026311 35 KILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSL 114 (240)
Q Consensus 35 ~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l 114 (240)
..+-+.+++.|+.++. ..+++ .++....|..+.+.+..||++|.+..+|..+..+ ..+-+...++
T Consensus 121 d~vwvaLAvlGi~lL~-p~~~~-------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~ 185 (292)
T COG5006 121 DFVWVALAVLGIWLLL-PLGQS-------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGML 185 (292)
T ss_pred hHHHHHHHHHHHHhhe-eccCC-------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHH
Confidence 5567888999998774 22221 1223468999999999999999999999875543 5677788999
Q ss_pred HHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhC
Q 026311 115 IGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLG 193 (240)
Q Consensus 115 ~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lg 193 (240)
.+++..+|+......+.-.+++ . +..- +-.|+ +|++.|.+-..++++.++..-+..+.+||.++.+.|++++|
T Consensus 186 vAaviv~Pig~~~ag~~l~~p~----l-l~la-LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~ 259 (292)
T COG5006 186 VAALIVLPIGAAQAGPALFSPS----L-LPLA-LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLG 259 (292)
T ss_pred HHHHHHhhhhhhhcchhhcChH----H-HHHH-HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhc
Confidence 9999999998753221101222 1 2222 46777 99999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 194 DSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 194 E~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
|++|+.|++|.+.|+.+..=..+..+|+
T Consensus 260 e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 260 ETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999999999998876555544433
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.57 E-value=4.2e-15 Score=124.31 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=143.7
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|++|...+|+||.+++|.++||+.+. ...+|..+.+.|+++++ +.+.... ++++..+...-+....|..-.
T Consensus 126 A~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIv--RPpFlFG-~~t~g~~~s~~~~~~~gt~aa 196 (346)
T KOG4510|consen 126 AVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIV--RPPFLFG-DTTEGEDSSQVEYDIPGTVAA 196 (346)
T ss_pred eEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEe--cCCcccC-CCccccccccccccCCchHHH
Confidence 67899999999999999999999874 46899999999999986 2232222 111111111112234567777
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFN 161 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~ 161 (240)
+.+++.-|.--++.|+..|+.+ .+....|..+++.+..++.....+. .+|+..+.. ++.. +.+|+.+.+.+.+.
T Consensus 197 i~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~---~~lP~cgkd-r~l~-~~lGvfgfigQIll 270 (346)
T KOG4510|consen 197 ISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGA---VQLPHCGKD-RWLF-VNLGVFGFIGQILL 270 (346)
T ss_pred HHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccc---eecCccccc-eEEE-EEehhhhhHHHHHH
Confidence 7777777777777788877764 3434455556666655554443332 133322212 2222 56777777899999
Q ss_pred HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
+.++|+-.+..+++..+.+-++|.++..+++||.++++.+.|+++++.....+..+|
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877765443
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.56 E-value=1.9e-14 Score=108.49 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHH
Q 026311 86 FVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWA 164 (240)
Q Consensus 86 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~a 164 (240)
++||.+.++.|+..++. |+...+.++++.+++ +++.....+......++. ..+... ++.++ ++++++.+|+++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~a 74 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSP---RQWLWL-LFLGLLGTALAYLLYFYA 74 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCCh---hhhhhh-hHhhccceehHHHHHHHH
Confidence 47999999999998887 489999999999988 666666554321102221 123344 67788 899999999999
Q ss_pred HhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 165 IKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 165 l~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
+++.++++++.+.+++|+++.+++++++||++++.+++|.++++.|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998864
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.56 E-value=2.5e-13 Score=118.84 Aligned_cols=200 Identities=19% Similarity=0.255 Sum_probs=149.8
Q ss_pred cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311 7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF 86 (240)
Q Consensus 7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 86 (240)
+..|+++++++.+++++|.+++ |+.++++-.+|+++....+...... ......+...|+++++++.+
T Consensus 98 s~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-------~~~~~~~~~~G~~ll~~sl~ 164 (303)
T PF08449_consen 98 SSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-------SNSSSFSSALGIILLLLSLL 164 (303)
T ss_pred hhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-------cccccccchhHHHHHHHHHH
Confidence 4679999999999988877654 7899999999998876433211100 11111223359999999999
Q ss_pred HHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHh--hcCCCccccc--ccCchhHHHHHHHHHHHHHHHHHHH
Q 026311 87 VLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELL--QNHKLDFGWE--FVGLPETMSYIALGGMINGVCQSFN 161 (240)
Q Consensus 87 ~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~--~~~~~~~~~~--~~~~~~~~~i~l~~gi~t~ia~~l~ 161 (240)
+-+...++++|..++++ ++.+...+..+++.+..++.... .++..+ .++ ...+..+..+ +...+++.++....
T Consensus 165 ~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~-~~~f~~~~p~~~~~l-~~~s~~~~~g~~~i 242 (303)
T PF08449_consen 165 LDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS-AIRFISAHPSVLLYL-LLFSLTGALGQFFI 242 (303)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH-HHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999987654 46788899999998888877776 333211 121 1111122222 33333566777777
Q ss_pred HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
++.+++.||...++...+--+..++++++++|+++++.+++|.++++.|..+.++.|+|+
T Consensus 243 ~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 243 FYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 889999999999999999999999999999999999999999999999999988777655
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.50 E-value=6.5e-13 Score=99.57 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVC 157 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia 157 (240)
.++.+++|++|++..++.|-=.|+. ||...|+.-.....+.+....+..++... .-+.. ...|.-+ ...|++++++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~-~~~~~-~k~~lfl-ilSGla~gls 80 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQA-GGEIG-PKSWLFL-ILSGLAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceec-ccccC-cceehhh-hHHHHHHHHH
Confidence 5788999999999999988767776 68888888888887777777766554211 10111 1122232 5677789999
Q ss_pred HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
..+|++++++..++++....-+.|+++++++++++||+++..+++|+.+|.+|.+++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999987754
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.45 E-value=3.2e-12 Score=108.59 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=131.5
Q ss_pred CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHH
Q 026311 6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAV 85 (240)
Q Consensus 6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa 85 (240)
++.+|++..+++.+++|||+++ .|+++++++.+|+....+..|. ..+ ..+.=|
T Consensus 105 Y~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~----------------lpw-----val~la 157 (293)
T COG2962 105 YFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS----------------LPW-----VALALA 157 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC----------------CcH-----HHHHHH
Confidence 4578999999999999999975 5789999999999988764331 112 244557
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026311 86 FVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAI 165 (240)
Q Consensus 86 ~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al 165 (240)
++|+.|-.+-|+. + . |+.+--..-++.-....+.+.+..+...+ ......+..+..+ +..|+.|+++..++..+-
T Consensus 158 ~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LL-v~aG~vTavpL~lf~~aa 232 (293)
T COG2962 158 LSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLL-VLAGLVTAVPLLLFAAAA 232 (293)
T ss_pred HHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhcCch-hhhcCCchHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 8999999874443 2 3 34444344444333333333333333221 0110111223332 566669999999999999
Q ss_pred hhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 166 KKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 166 ~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
|+.+-+..+.+.|++|..-.+++++++||+++..+.+..++|-+|+.+..++.-
T Consensus 233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887654
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.35 E-value=1e-12 Score=109.52 Aligned_cols=180 Identities=14% Similarity=0.251 Sum_probs=138.0
Q ss_pred HHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHH
Q 026311 13 IFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTV 92 (240)
Q Consensus 13 t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 92 (240)
+.+++|+++|.|-+ ..|+.|+++|+.|++++++.+ .+++++.++++...||.+++++|-+||+.+
T Consensus 118 v~~lsw~fLktrYr------lmki~gV~iCi~GvvmvV~sD---------V~agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 118 VLVLSWFFLKTRYR------LMKISGVVICIVGVVMVVFSD---------VHAGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred HHHHHHHHHHHHHh------hheeeeEEeEecceEEEEEee---------eccccccCCCCCccCcEEEEecceeeeecc
Confidence 45688999877665 468999999999999998643 223345566778899999999999999999
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCC-c-ccccccCchhHHHHHHHHHH--HHHHHHHHHHHHHhhc
Q 026311 93 VLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKL-D-FGWEFVGLPETMSYIALGGM--INGVCQSFNAWAIKKR 168 (240)
Q Consensus 93 vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~-~~~~~~~~~~~~~i~l~~gi--~t~ia~~l~~~al~~~ 168 (240)
+....+.|+. |...+.....++|+++..+- ++.++.. . ++|. ... . .|++. +-.+-|.+....+|..
T Consensus 183 v~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~----~~i-~--~yl~f~L~MFllYsl~pil~k~~ 253 (336)
T KOG2766|consen 183 VSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD----SAI-F--LYLRFALTMFLLYSLAPILIKTN 253 (336)
T ss_pred ccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh----HHH-H--HHHHHHHHHHHHHHhhHHheecC
Confidence 9998888887 47888899999999998776 5555432 1 2343 112 1 34444 4445566666788999
Q ss_pred CceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 169 GPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 169 g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
|++...+-....-.++.+. ..+|-+++|...+..+.+..|+++...++
T Consensus 254 ~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 254 SATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred CceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 9999988888888888888 56788899999999999999998865443
No 23
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.20 E-value=5e-10 Score=96.93 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVC 157 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia 157 (240)
.++.++++++||.+.+.+||..++.+ + .+.+.+..+++.+.|+....... . .|+..... +...++..++.....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-D--FLWWALLAHSVLLTPYGLWYLAQ-V-GWSRLPAT-FWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-H--HHHHHHHHHHHHHHHHHHHhccc-C-CCCCcchh-hHHHHHHHHHHHHHH
Confidence 35788999999999999998766532 3 34555566666666665542111 1 23321111 222212333367788
Q ss_pred HHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 158 QSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
+.++++++++.+++.++.+.+..|+++.+++++++||+++..+++|.++++.|+.++..+
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999999887653
No 24
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.19 E-value=4.5e-10 Score=97.98 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH
Q 026311 73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM 152 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi 152 (240)
+...|.++++.++++|+...+..|.. .+.+ +..+.+++++++.+.++++.....+.....-.......+ .. ...+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKI-FM-LAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHH-HH-HHHHH
Confidence 34689999999999999999998764 5664 899999999999887776654432111000000011111 21 23455
Q ss_pred -HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 153 -INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 153 -~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
+.++.+.++++++++.+++.+++..+..|++.+++++++++|+++..+++|.++.+.|+.++.+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999999999999999888653
No 25
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.12 E-value=1.2e-09 Score=83.80 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHH
Q 026311 77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-ING 155 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ 155 (240)
|.++++.+.++-+...++.|+=.++.++ ...... . +. ..... . + . ... +|+|+ +.+
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~-~~~~~---~--~-p---------~~~-i~lgl~~~~ 59 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IA-ALLAF---G--L-A---------LRA-VLLGLAGYA 59 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HH-HHHHH---h--c-c---------HHH-HHHHHHHHH
Confidence 6677888888888888888776665442 221111 0 00 00000 0 0 0 122 68888 999
Q ss_pred HHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHH--HhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 156 VCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAI--TLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 156 ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l--~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
++|.+|.+++++.+.+.+..+..+.++...+.++. ++||++++.+++|.++|++|+++++++++|+
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999888888885 8999999999999999999999988655543
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.06 E-value=3.6e-09 Score=90.18 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccc-cCchhHHHHHHHHHH
Q 026311 76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLD--FGWEF-VGLPETMSYIALGGM 152 (240)
Q Consensus 76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~--~~~~~-~~~~~~~~i~l~~gi 152 (240)
.|..++++++++|+...+..|. ..+. ++.++..+.++++++.+.++.....+... ..++. .....+..+ ...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSL-LLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHH-HHHHH
Confidence 4788999999999999999887 4456 58999999999998887766544332100 01110 011112222 34444
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
..++.+.++++++++.++..++...+..|++.+++++++++|+++..+++|.++.++|+.++..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999999999999999999999887643
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.01 E-value=6.5e-09 Score=81.49 Aligned_cols=139 Identities=20% Similarity=0.263 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------CCchhHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccccC-----chhH
Q 026311 77 GCVYLLAAVFVLSSTVVLQAATLGD------FPAPMSLCAITSLIGVFVTTVVELLQNHKLDFG--WEFVG-----LPET 143 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~~~~~~~------~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~--~~~~~-----~~~~ 143 (240)
|.++.+.|.++.|+++++.|+..++ ..++..+..+....+.+.+++.+++.|+..... ..... +...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999987655 236889999999999999999998887643101 11100 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 144 MSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 144 ~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
...++..|+.........++.+++.+|...++...+--+..+++|++++||++++.+++|.++.+.|.++.+
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 222134444444555567789999999999999999999999999999999999999999999999987643
No 28
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1e-08 Score=84.85 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=140.9
Q ss_pred hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311 9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL 88 (240)
Q Consensus 9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 88 (240)
-|+=++++++++.+++-.|| |...++.-+.|+.+.. ++..... ...+.....|.++++++--.=
T Consensus 121 KPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~---------g~e~~t~g~GElLL~lSL~mD 184 (337)
T KOG1580|consen 121 KPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG---------GAEDKTFGFGELLLILSLAMD 184 (337)
T ss_pred CCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC---------CCcccccchHHHHHHHHHHhc
Confidence 46777888999877666654 7899999999998764 5422111 111234568999999988777
Q ss_pred HHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 026311 89 SSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLD-FGWEFVGLPETMSYIALGGMINGVCQSFNAWAIK 166 (240)
Q Consensus 89 a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~ 166 (240)
+.-...|.|.++.+. ..-+++.++.+.+++.+..-.++.++..+ ..+....+..++-+ ...++++.++..+.+..+.
T Consensus 185 GlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l-~l~ai~s~LGQ~fIF~tv~ 263 (337)
T KOG1580|consen 185 GLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDL-TLLAIASCLGQWFIFKTVE 263 (337)
T ss_pred ccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHH-HHHHHHHHhhhHHHHHHHH
Confidence 777888888877653 34567777888887776554444443111 01111122334454 5566789999999999999
Q ss_pred hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 167 KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 167 ~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
..||-.-|+....--.++++.++++++.+++..||+|..+++.++..=...
T Consensus 264 ~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 264 EFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 999999999999999999999999999999999999999999998775443
No 29
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.95 E-value=1.6e-09 Score=94.76 Aligned_cols=194 Identities=13% Similarity=0.128 Sum_probs=139.7
Q ss_pred cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311 7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF 86 (240)
Q Consensus 7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 86 (240)
.++|.++.++++++.+|+.+++. ++.++.-..|+.+-.. + +.+ -...|.+..+++.+
T Consensus 117 a~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~--~--------------e~~-fn~~G~i~a~~s~~ 173 (316)
T KOG1441|consen 117 ALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASV--T--------------ELS-FNLFGFISAMISNL 173 (316)
T ss_pred hhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeee--c--------------ccc-ccHHHHHHHHHHHH
Confidence 57899999999999999988764 4677777777765432 1 112 23589999999999
Q ss_pred HHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHH-HHHHhhcCCCcccccc-cCchhHHHHHHHHHHHHHHHHHHH
Q 026311 87 VLSSTVVLQAATLG--DFP-APMSLCAITSLIGVFVTT-VVELLQNHKLDFGWEF-VGLPETMSYIALGGMINGVCQSFN 161 (240)
Q Consensus 87 ~~a~~~vl~~~~~~--~~~-~~~~~~~~~~l~g~l~l~-~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~gi~t~ia~~l~ 161 (240)
+.+..+++.++..+ ++. |++.+..++.-.+.+.++ |.....|+.....+.. .++...... ++..++........
T Consensus 174 ~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sv~~f~~Nls~ 252 (316)
T KOG1441|consen 174 AFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL-LLNSVLAFLLNLSA 252 (316)
T ss_pred HHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH-HHHHHHHHHHHHHH
Confidence 99999999999873 222 678888888888888888 7766554321000111 111111121 22222222222345
Q ss_pred HHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311 162 AWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS 224 (240)
Q Consensus 162 ~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 224 (240)
++.+++.+|..-++...+-=++.++.|+++++|++++.+..|.++.++|+++.++.|.|++++
T Consensus 253 f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 253 FLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 678999999999998888888899999999999999999999999999999998877766654
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.88 E-value=7.2e-08 Score=81.96 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=119.8
Q ss_pred CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHH
Q 026311 6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAV 85 (240)
Q Consensus 6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa 85 (240)
..+-.++|++++++++|+|++.+ ||+++.+-+.|++++-.......+...+........+.+...|.+++++++
T Consensus 50 ~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~ 123 (244)
T PF04142_consen 50 SQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAA 123 (244)
T ss_pred HhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHH
Confidence 34567899999999999998866 679999999999876432111100000000000112334578999999999
Q ss_pred HHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHhhcCCC-c-ccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311 86 FVLSSTVVLQAATLGDFPAP-MSLCAITSLIGVFVTTVVELLQNHKL-D-FGWEFVGLPETMSYIALGGMINGVCQSFNA 162 (240)
Q Consensus 86 ~~~a~~~vl~~~~~~~~~~~-~~~~~~~~l~g~l~l~~~~~~~~~~~-~-~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~ 162 (240)
++=++-.++..|..|+.+.+ ...+....+.|.+..++.....+... . ...-..++...+.+++ ..+++=.+..
T Consensus 124 ~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva 199 (244)
T PF04142_consen 124 FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIF----LQAIGGLLVA 199 (244)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHH----HHHHhhHHHH
Confidence 99999999999998875423 34455555666666555443332211 0 0110111111111112 3333334455
Q ss_pred HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHH
Q 026311 163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFL 206 (240)
Q Consensus 163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~l 206 (240)
..+|+.+...=+....+.-+.+.++++.++|.+++....+|.++
T Consensus 200 ~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 200 FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 56777777666677778888999999999999999999999875
No 31
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.78 E-value=1.2e-07 Score=84.89 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
.+-++..-++|+.+.++.|...+.--++....++-+.++++.++++++..++.. .++......+..+ ...|+ + .+
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~--~~~~~~~~~~~~l-~l~g~~g-~~ 90 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR--SLPPLSVSILSKI-GLLGFLG-SM 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCcchHHHHHHH-HHHHHHH-HH
Confidence 455667788999999998888765336888999999999999998887654311 1110001122232 34566 5 45
Q ss_pred HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHH------hCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAIT------LGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~------lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
.+.++++++++.+++.++++.++.|++.+++++++ ++|+++..+++|.++-++|+.++...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 66689999999999999999999999999999999 69999999999999999999887653
No 32
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.76 E-value=5.8e-08 Score=72.71 Aligned_cols=71 Identities=15% Similarity=0.325 Sum_probs=63.7
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311 149 LGGM-INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 149 ~~gi-~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
..|+ +...++.+|+++.++.++ .++....+.|+++.++++++++|+++..+++|.+++.+|+.++.+.+-+
T Consensus 39 ~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 39 LAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4456 566899999999999995 8889999999999999999999999999999999999999999886543
No 33
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.70 E-value=4.6e-07 Score=78.84 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
.+..+...+.|+...+..|...++. +|...+.+-+..+++.++++......... .. ..+... ...|+ ....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-~~-----~~~~~~-~~~g~~~~~~ 81 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLP-TL-----RQWLNA-ALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cH-----HHHHHH-HHHHHHHHHH
Confidence 4557778899999999998777766 59999999999999888877654322111 11 122222 34555 5556
Q ss_pred HHHHHHHHH-hhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 157 CQSFNAWAI-KKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 157 a~~l~~~al-~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
.+.+++++. ++.+++.++...++.|++..+++++ +||+++..+++|..+.++|++++.+.
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 777888888 8999999999999999999999985 79999999999999999999887653
No 34
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.67 E-value=3.1e-07 Score=78.03 Aligned_cols=118 Identities=14% Similarity=-0.000 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 026311 88 LSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWAIK 166 (240)
Q Consensus 88 ~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~al~ 166 (240)
|+...+..|...++..++.....+.++.+.+.+.+..... . . .. .+.-. +..|. +..+.+.+++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~--~-~~------~~~~~-~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-P--P-LK------RLLRL-LLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-c--C-Hh------HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3344455565555444578888889888888776654322 1 1 11 11122 34455 77788999999999
Q ss_pred hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 167 KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 167 ~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
+.+++.+++...+.|++..+++.++++|++++.+++|..+.++|+.++..
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 99999999999999999999999999999999999999999999988764
No 35
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.63 E-value=7.7e-07 Score=77.71 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
.++.++++++|+...+..|...++. +|...+++-+.++++.++++.. .+. . .+. .+ +..|+ ....
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~--~~~-~-~~~--------~~-~~~g~~~~~~ 71 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA--RPK-V-PLN--------LL-LGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc--CCC-C-chH--------HH-HHHHHHHHHH
Confidence 3668899999999999999877777 5999999999887766554321 111 1 111 11 22344 3445
Q ss_pred HHHHHHHHHhh-cCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 157 CQSFNAWAIKK-RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 157 a~~l~~~al~~-~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
.+.+++.+.++ .++..+++..++.|++..++++++++|+++..+++|.++.++|+.+...
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 55566778887 5778999999999999999999999999999999999999999988764
No 36
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.61 E-value=6.2e-07 Score=78.17 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHH
Q 026311 76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMING 155 (240)
Q Consensus 76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ 155 (240)
.+.++.+.++++|+...+..|...+..| |....++-+..+++.+.++. ..+ .++.. + +..+ +..++...
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~~---~~~~~-~--~~~~-~~~~l~~~ 72 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GFP---RLRQF-P--KRYL-LAGGLLFV 72 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---ccc---ccccc-c--HHHH-HHHhHHHH
Confidence 4577899999999999999998888885 89999999999888876542 111 11110 1 1111 22222333
Q ss_pred HHHHHHHHHHh----hcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 156 VCQSFNAWAIK----KRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 156 ia~~l~~~al~----~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
..+.+++.+++ ..++..++...++.|++..++++++++|+++..+++|.++.++|++++...
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 34444555554 457778889999999999999999999999999999999999999887643
No 37
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.60 E-value=8.7e-07 Score=76.04 Aligned_cols=193 Identities=16% Similarity=0.230 Sum_probs=135.5
Q ss_pred HHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHH
Q 026311 13 IFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTV 92 (240)
Q Consensus 13 t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 92 (240)
+++...++.+.|.+.+ +.+-..+--.|+.+....+..+ +. ....+++...|..++...-+.=+.-+
T Consensus 123 Vmlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~-------~~~g~~ns~~G~~Ll~~~L~fDgfTn 188 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SS-------SKSGRENSPIGILLLFGYLLFDGFTN 188 (327)
T ss_pred HHHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Cc-------cccCCCCchHhHHHHHHHHHHHhhHH
Confidence 3556677766666554 5566666667776654432211 00 11233467899999999988888888
Q ss_pred HHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCc-cccc-ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026311 93 VLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLD-FGWE-FVGLPETMSYIALGGMINGVCQSFNAWAIKKRG 169 (240)
Q Consensus 93 vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~-~~~~-~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g 169 (240)
..|.++.+++. ++.+++.+..+++++.........+.... +++- ..++. +.-+ +....+.++++.+.+.-+++-|
T Consensus 189 ~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~-~~Di-~l~s~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 189 ATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDV-AFDI-LLYSTCGAVGQLFIFYTIERFG 266 (327)
T ss_pred hHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhH-HHHH-HHHHHhhhhhhheehhhHhhcc
Confidence 88998887643 56888888889988887766332222111 1221 12222 2233 2333467788888889999999
Q ss_pred ceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 170 PVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 170 ~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
+-.-+..+..-=++.++++.+.+|.++++.|++|..+++.|+++-..-++|+
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999876655553
No 38
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.56 E-value=5.6e-06 Score=71.21 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=117.0
Q ss_pred cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHh--hhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHH
Q 026311 7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLC--VVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAA 84 (240)
Q Consensus 7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~--~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 84 (240)
+.+++|+.+++.+|+-||.++. +++.+. ..|+++.+ ++.. +-...|-.++.+|
T Consensus 118 SSsi~FIllFs~if~lEk~~w~--------L~l~v~lI~~Glflft-~KsT----------------qf~i~Gf~lv~~a 172 (349)
T KOG1443|consen 118 SSSILFILLFSLIFKLEKFRWA--------LVLIVLLIAVGLFLFT-YKST----------------QFNIEGFFLVLAA 172 (349)
T ss_pred ccHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHhhheeEEE-eccc----------------ceeehhHHHHHHH
Confidence 4679999999999999998764 444444 44454443 3321 1235688888777
Q ss_pred HHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHHHHHhhcCCCc----ccccccCc-hhHHHHHHHHHHHHH
Q 026311 85 VFVLSSTVVLQAATLGDF----PAPMSLCAITSLIGVFVTTVVELLQNHKLD----FGWEFVGL-PETMSYIALGGMING 155 (240)
Q Consensus 85 a~~~a~~~vl~~~~~~~~----~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~----~~~~~~~~-~~~~~i~l~~gi~t~ 155 (240)
.++=++-=.+.+...++. ++|+.......-.-.+.++|..+.+|+... -.|..... ..+..+ .+.+.+..
T Consensus 173 S~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~-g~i~l~g~ 251 (349)
T KOG1443|consen 173 SLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVI-GLISLGGL 251 (349)
T ss_pred HHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHH-HHHHHHHH
Confidence 666444333333333332 246655555444555667888888775421 12322222 122222 34444555
Q ss_pred HHHHH---HHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311 156 VCQSF---NAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV 214 (240)
Q Consensus 156 ia~~l---~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~ 214 (240)
.+|.+ -+-.+.+++.-..+++.-.-=+-..++|....+|+++..-++|..+...|+..-
T Consensus 252 laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 252 LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 55554 335678888888888888888889999999999999999999999999999875
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.54 E-value=2.2e-06 Score=74.87 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=89.0
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 026311 91 TVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGP 170 (240)
Q Consensus 91 ~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g~ 170 (240)
++++.|...++++.|+..+.+++.++++...+.......... ..+. ..+..+ +..|+..++.+.++++++++.++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~-~~~g~~~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRL-KISS---ALLKLL-LPVAIVHTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCH---HHHHHH-HHHHHHHHHHHHHHHHHHHhccH
Confidence 345667777765678999999999987766554211111111 1111 123333 45566446778899999999999
Q ss_pred eeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311 171 VFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV 214 (240)
Q Consensus 171 ~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~ 214 (240)
+.+++...+.|++.+++++++++|+++..++.|.+++++|+.+.
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999765
No 40
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1.4e-05 Score=70.20 Aligned_cols=194 Identities=12% Similarity=0.068 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311 9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL 88 (240)
Q Consensus 9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 88 (240)
-=+.|+++..+++++|++++ ||..+++.++|+.++-....+. . .+.......+...|...++.+++.=
T Consensus 128 KI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~-~-----~a~~~~~~~n~~~G~~avl~~c~~S 195 (345)
T KOG2234|consen 128 KILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSP-T-----GAKSESSAQNPFLGLVAVLVACFLS 195 (345)
T ss_pred HHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCC-C-----CccCCCcccchhhhHHHHHHHHHHH
Confidence 34567999999999999876 5799999999998774211111 0 0111223456678999999999999
Q ss_pred HHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCccccc---ccCc-hhHHHHHHHHHH-HHHHHHHHHH
Q 026311 89 SSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWE---FVGL-PETMSYIALGGM-INGVCQSFNA 162 (240)
Q Consensus 89 a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~---~~~~-~~~~~i~l~~gi-~t~ia~~l~~ 162 (240)
+.-.++..+..|+-.. ...-+.-..++|.++.+...+..+.... .|. ..++ ..|..+ +-.++ +-.++.+
T Consensus 196 gfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i-~~~gff~G~s~~vw~vV-l~~a~gGLlvs~v--- 270 (345)
T KOG2234|consen 196 GFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAI-NEYGFFYGYSSIVWLVV-LLNAVGGLLVSLV--- 270 (345)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccc-ccCCccccccHHHHHHH-HHHhccchhHHHH---
Confidence 9999998888876322 2334444456666665554443322111 121 1122 223333 44555 4334433
Q ss_pred HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
+|+.+-..=.....+.-++..+.++.++|-++|....+|..+++..+.+....+.++
T Consensus 271 --~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 271 --MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 344443333344456777888888999999999999999999999999988666554
No 41
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.50 E-value=2.8e-06 Score=75.93 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=90.1
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026311 90 STVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRG 169 (240)
Q Consensus 90 ~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g 169 (240)
.+++..|...+..|-|+.++.++++++++.+.++....-.+.. +... ....+..+ +-.|++....+...+.++++.+
T Consensus 63 ~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~~~l-lp~gl~~~~~~~~~~~sl~~~s 139 (350)
T PTZ00343 63 LYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIP-RIKS-LKLFLKNF-LPQGLCHLFVHFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc
Confidence 3455677777777558999999999998876554322111111 1110 11123333 5666644445666779999999
Q ss_pred ceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 170 PVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 170 ~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
++.+.+...++|++.+++++++++|+++..+++|.+++++|+.+..
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999999999865
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.46 E-value=5.3e-07 Score=67.44 Aligned_cols=63 Identities=6% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
+-++++.+|.+++++.+.+.+....++.|+.+.+.|++++||++++.+++|.+++++|+.++.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999999999999999998764
No 43
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.44 E-value=8.2e-07 Score=74.19 Aligned_cols=198 Identities=17% Similarity=0.124 Sum_probs=118.0
Q ss_pred cCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCC-----------CCCCCcCCCCccccCCc
Q 026311 5 MPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTA-----------PAQETSVNTPNIIFDRE 73 (240)
Q Consensus 5 i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~-----------~~~~~~~~~~~~~~~~~ 73 (240)
.-+..|+++++..+...+||.. +.|++++.+...|++.-.+.+.+. .... ++..+......+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~------~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~-~~~~~~~~~~g~ 82 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVT------QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM-VQSSAKTLMFGN 82 (222)
T ss_pred HHhcchHHHHHhcccccceeee------hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec-CCCCcccccccc
Confidence 3456788999999888888876 247899999999987432211100 0000 000000011123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHH-HHHHHHHHHHHHhhcCCCccccc--ccCchhHHHHHHHH
Q 026311 74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITS-LIGVFVTTVVELLQNHKLDFGWE--FVGLPETMSYIALG 150 (240)
Q Consensus 74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~-l~g~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~l~~ 150 (240)
...|...++.++++=+.-.+++++..|+++........+. +++.+.........+......+. ...+... .+.
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 158 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAV----WIV 158 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHH----HHH
Confidence 4567777777777777777777776555432222222222 22222111111111111000111 1111111 122
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311 151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY 213 (240)
Q Consensus 151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l 213 (240)
.+..++...+..+.+|+.++...+....+.++++.+++++++||+++..+++|+.+++.|+++
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 224566666788999999999999999999999999999999999999999999999998754
No 44
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=6.8e-06 Score=71.17 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=138.6
Q ss_pred ccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHH
Q 026311 4 AMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLA 83 (240)
Q Consensus 4 ~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (240)
++=+.+|+++++....+++.|.+ +.-+..+....+|....+..+ .. -...|-.+++.
T Consensus 108 v~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~d----------------~s-f~~~gY~w~~~ 164 (314)
T KOG1444|consen 108 VFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFTD----------------LS-FNLRGYSWALA 164 (314)
T ss_pred HHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhcccc----------------ce-ecchhHHHHHH
Confidence 44567889999888888775544 445677777777776544211 11 12358999999
Q ss_pred HHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcc-----cccccCchhHHHHHHHHHH-HHHH
Q 026311 84 AVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDF-----GWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 84 aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
..++-+.+.+..|+..+... +......+..+.....+....+++++..+. .|.. ...+..+ ...++ +-++
T Consensus 165 n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~~~-~lScv~gf~i 241 (314)
T KOG1444|consen 165 NCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLVVM-LLSCVMGFGI 241 (314)
T ss_pred HHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHHHH-HHHHHHHHHH
Confidence 99999999999988764321 346677888888888877777776642110 1211 1122333 56777 6777
Q ss_pred HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI 226 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~ 226 (240)
.|..+ |..+..+++..++.....-....+-+.++.|++.++..++|..+-++|-.+.+..+.|+++.++
T Consensus 242 sy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 242 SYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHH-HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 77655 8899999999999997778888888888889999999999999988887777776655555444
No 45
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.40 E-value=1.4e-05 Score=67.86 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=121.9
Q ss_pred cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcC--CCCccccCCchHHHHHHHHHH
Q 026311 7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSV--NTPNIIFDREKIIGCVYLLAA 84 (240)
Q Consensus 7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~--~~~~~~~~~~~~~G~~l~l~a 84 (240)
+-.++-++++++++.++|-+. +|...+.+-.+|+++-.....++.+..++. +.+.......|..|..++..|
T Consensus 99 sgsll~nM~~g~il~~k~Ys~------~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~a 172 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSL------RQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFA 172 (330)
T ss_pred cCcHHHHHHHHHHhccceeeh------hhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHH
Confidence 346788899999997776655 478999999999987765433322221000 011112233577899999998
Q ss_pred HHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCC-ccccc--------------ccCchhHHHHHH
Q 026311 85 VFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKL-DFGWE--------------FVGLPETMSYIA 148 (240)
Q Consensus 85 a~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~-~~~~~--------------~~~~~~~~~i~l 148 (240)
-+.=|.-.+++.+.=|+|. ++-+..+|.-+.. +|.-++..++. + +|. ...+..| .
T Consensus 173 l~~sa~mgiyqE~~Y~kyGKh~~EalFytH~Ls----LP~Flf~~~div~-~~~~~~~se~~~~p~~g~~vP~~~----~ 243 (330)
T KOG1583|consen 173 LLLSAYMGIYQETTYQKYGKHWKEALFYTHFLS----LPLFLFMGDDIVS-HWRLAFKSESYLIPLLGFKVPSMW----V 243 (330)
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhc----cchHHHhcchHHH-HHHHHhcCcceeccccCccccHHH----H
Confidence 8888877777766655553 3455666665543 34433333221 1 111 0011122 2
Q ss_pred HHHHHHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 149 LGGMINGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 149 ~~gi~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
|+- +..+.++.=.+ .-.+..+-.+++...+-=.+..+++.+.+..++++.+++|.++++.|-++..
T Consensus 244 yLl-~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 244 YLL-FNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHH-HHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 221 23334333333 3445667788888999999999999999999999999999999999966653
No 46
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=8.7e-07 Score=75.09 Aligned_cols=207 Identities=11% Similarity=0.107 Sum_probs=131.0
Q ss_pred cchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHH
Q 026311 7 NLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVF 86 (240)
Q Consensus 7 ~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 86 (240)
+++.+|+.++.++++|+|=+.. -..++.+-+.|- .+ |.+.. ...+.-...|.++.+.|.+
T Consensus 136 sLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF-~l----GvdqE---------~~~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGF-GL----GVDQE---------GSTGTLSWIGVIFGVLASL 195 (347)
T ss_pred chhhhHHHHhHHhhcccccccc------cceeehhheehh-ee----ccccc---------cccCccchhhhHHHHHHHH
Confidence 3567899999999998876543 122333222222 21 21100 0112234589999999999
Q ss_pred HHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCccccc--ccCchhHHHHHHHHHH-HHHHHHHHHH
Q 026311 87 VLSSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWE--FVGLPETMSYIALGGM-INGVCQSFNA 162 (240)
Q Consensus 87 ~~a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~i~l~~gi-~t~ia~~l~~ 162 (240)
+-|+..+.+||......| -..++.+....+.++.+|...+.++... .|. ..++...+.++...|+ +-.+.|.- .
T Consensus 196 ~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~-v~~~~~l~a~~Fw~~mtLsglfgF~mgyvT-g 273 (347)
T KOG1442|consen 196 AVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQA-VVGFPHLPAIKFWILMTLSGLFGFAMGYVT-G 273 (347)
T ss_pred HHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHH-HcCcccchHHHHHHHHHHHHHHHHHhhhee-e
Confidence 999999999876543333 4678999999999998888776554222 222 1112222232234444 44444422 2
Q ss_pred HHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 026311 163 WAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAE 235 (240)
Q Consensus 163 ~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
|-+|-.+|..=.+-..--...=.++++.+++|..+..-|-|-.+++.|-....+.|++|++.+....||.|.|
T Consensus 274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~~~~ 346 (347)
T KOG1442|consen 274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPATQK 346 (347)
T ss_pred EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCccccc
Confidence 4466666666555555555666889999999999999999999999998888887776665554444444443
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.32 E-value=2.1e-05 Score=67.19 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-
Q 026311 74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM- 152 (240)
Q Consensus 74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi- 152 (240)
...+....+.+++.|+......|...++............+.+.....+.... +.. . .++...+ .+.. ...+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~~-~~~~--~~~~~~ 78 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPR-G-LRPALRP-WLLL--LLLALL 78 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcc-c-ccccccc-hHHH--HHHHHH
Confidence 35688888888899999999888776652224445454666665552222221 110 0 1111111 1122 34455
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHH-HHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSA-ITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~-l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
.....+.+|+.++++.++..+....+..|++..++++ ++++|+++..++.|..+.+.|++++.++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 7888899999999999999999999999999999997 7779999999999999999999998775544
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.26 E-value=1.6e-05 Score=68.16 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccc-cCchhHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEF-VGLPETMSYIALGGMI 153 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~gi~ 153 (240)
..|.++.+.|-+.|+.--.+.|- .++.| +.++-++-.+.+...++..-....+... -++. ..+..+... ...++-
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~-~~~~~~~p~~~~~~-~l~a~l 81 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRE-LKQLLKQPKTLLML-ALTALL 81 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCcHHHHHH-HHHHHH
Confidence 46999999999999998887665 45555 6777777777776665554443332211 1221 111223332 334443
Q ss_pred HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
-..-+.+|.|+..+.....+|+-+++.|++.+++|.++++|+++..|++..++..+|+..-.|.
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999887764
No 49
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.22 E-value=3.9e-05 Score=65.76 Aligned_cols=178 Identities=19% Similarity=0.165 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHH
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSS 90 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 90 (240)
+.+.++++++++|+-+.+++ ..-.+++++-++|+++-...+..+ ...+...+...|...++++.+.|-.
T Consensus 84 vg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~~~~---------~~~~~~~~~~kgi~~Ll~stigy~~ 152 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQDKKS---------DKSSSKSNMKKGILALLISTIGYWI 152 (269)
T ss_pred HHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhccccccc---------cccccccchhhHHHHHHHHHHHHHH
Confidence 34677888999997665442 122346677777886654322111 0111234556899999999999999
Q ss_pred HHHHHHHhhccCCchhHHHHHH---HHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026311 91 TVVLQAATLGDFPAPMSLCAIT---SLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKK 167 (240)
Q Consensus 91 ~~vl~~~~~~~~~~~~~~~~~~---~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~ 167 (240)
|.++.|-. +. |+.+.-.-| ++.+++... ...++... .+. .+.. +..|+.=+++-..+..+.++
T Consensus 153 Y~~~~~~~--~~-~~~~~~lPqaiGm~i~a~i~~---~~~~~~~~--~k~----~~~n--il~G~~w~ignl~~~is~~~ 218 (269)
T PF06800_consen 153 YSVIPKAF--HV-SGWSAFLPQAIGMLIGAFIFN---LFSKKPFF--EKK----SWKN--ILTGLIWGIGNLFYLISAQK 218 (269)
T ss_pred HHHHHHhc--CC-ChhHhHHHHHHHHHHHHHHHh---hccccccc--ccc----hHHh--hHHHHHHHHHHHHHHHhHHh
Confidence 99996542 33 355443333 334433322 22222111 111 1222 23344344566678888999
Q ss_pred cCceeeeechhHHHHHHHHHHHHHhCCCccch----hhHHHHHHHHHHHH
Q 026311 168 RGPVFVSMFSPIATVISVILSAITLGDSIDIG----SLSGMFLMFAGLYY 213 (240)
Q Consensus 168 ~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~----~iiG~~lIl~Gv~l 213 (240)
.|.+.+-.+.-+..+++.+.|.+++||+=+.. .++|.++++.|.++
T Consensus 219 ~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 219 NGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999998865 45677877777543
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.21 E-value=1.7e-05 Score=69.16 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHH
Q 026311 77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGV 156 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~i 156 (240)
|.++.+.++++|+..-+..|+.. +.+ +.+.. ...+|++....+......+ ..+. ......++ ..|+.=++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~~---~~~~-~~~~~~g~--l~G~~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVLP---EFWA-LSIFLVGL--LSGAFWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhCC---cccc-cHHHHHHH--HHHHHHHh
Confidence 56789999999999999887754 332 33332 3556666655554443321 1110 01111121 12222446
Q ss_pred HHHHHHHHHhhcCceeeeechh-HHHHHHHHHHHHHhCCCccchh----hHHHHHHHHHHHHHhhc
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSP-IATVISVILSAITLGDSIDIGS----LSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~-l~Pv~a~l~~~l~lgE~~~~~~----iiG~~lIl~Gv~l~~~~ 217 (240)
+...|+.++|+.|.+.+-.+.+ +.|++..+++.+++||+.+..+ ++|.++++.|++++...
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 6789999999999999988888 8999999999999999999999 99999999998886443
No 51
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.20 E-value=1e-05 Score=68.58 Aligned_cols=173 Identities=16% Similarity=0.245 Sum_probs=123.9
Q ss_pred CCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHH
Q 026311 31 YSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDRE-KIIGCVYLLAAVFVLSSTVVLQAATLGDFP-APMSL 108 (240)
Q Consensus 31 ~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~ 108 (240)
......+...+-.+|+++....+.. .+++ ...|..++-+|-++=|.--.+|.+..+.++ +...+
T Consensus 158 Y~v~d~~aA~lm~lGli~FTLADs~--------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~Em 223 (367)
T KOG1582|consen 158 YGVHDYIAAMLMSLGLIWFTLADSQ--------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEM 223 (367)
T ss_pred ccHHHHHHHHHHHHHHHhhhhcccc--------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceE
Confidence 3445677888888898877654321 1122 357999998888888887777888777665 34567
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHH
Q 026311 109 CAITSLIGVFVTTVVELLQNHKLDFGWEFVG--LPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVI 186 (240)
Q Consensus 109 ~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l 186 (240)
..++..+|.+.++......++-++ .|++-. +....+..++....+-++.......++..|+..++.....---++++
T Consensus 224 vfySy~iG~vflf~~mvlTge~f~-a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~ 302 (367)
T KOG1582|consen 224 VFYSYGIGFVFLFAPMVLTGELFS-AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTIL 302 (367)
T ss_pred EEeeecccHHHHHHHHHhcccchh-hhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHH
Confidence 778888888887777776666555 565321 11122221222224445555555668888999999999999999999
Q ss_pred HHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 187 LSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 187 ~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
++++++..++|....-|+.++..|+++....+
T Consensus 303 lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 303 LSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999987765
No 52
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.16 E-value=8e-06 Score=61.74 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+-+++|+++.+++|+.+.+.+=.. ..+.-+...+.|++++||++++.+++|.++|+.|++..+...+
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 567899999999999998877555 4578888999999999999999999999999999999876554
No 53
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.14 E-value=3e-05 Score=66.14 Aligned_cols=190 Identities=13% Similarity=0.188 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHH
Q 026311 9 APGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVL 88 (240)
Q Consensus 9 ~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 88 (240)
.-+||.+++.-+++.+++.+ ||+|+..-..|++.+...+-...+. .....++...||++++.|-+.-
T Consensus 122 viIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~~~~-------p~~d~s~iitGdllIiiaqiiv 188 (372)
T KOG3912|consen 122 VIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHLVTD-------PYTDYSSIITGDLLIIIAQIIV 188 (372)
T ss_pred hhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecccccC-------CccccccchhhhHHHHHHHHHH
Confidence 34789999999999888865 6799999999998774322111000 0111234578999999999999
Q ss_pred HHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHH----HhhcC-CCcc-------ccc----ccCchhHHHHHHHHH
Q 026311 89 SSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVE----LLQNH-KLDF-------GWE----FVGLPETMSYIALGG 151 (240)
Q Consensus 89 a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~----~~~~~-~~~~-------~~~----~~~~~~~~~i~l~~g 151 (240)
|+-.++-.|..+++. +|.....|+.++|.+.+..+. ++... +++- +|. .-.... + ++.+
T Consensus 189 aiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p--~--l~va 264 (372)
T KOG3912|consen 189 AIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESP--S--LAVA 264 (372)
T ss_pred HHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCc--h--hHHH
Confidence 999999887776653 689999999999955443333 22211 2110 111 000001 1 1222
Q ss_pred H-HHHHHHHHHHH----HHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 152 M-INGVCQSFNAW----AIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 152 i-~t~ia~~l~~~----al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
. +..++-.++|. ..|..+++.=.+.-.+--.+-=+++.....|.++..|+.|.++.+.|+++.+
T Consensus 265 l~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 265 LIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22222222221 2334444444444444444444555556679999999999999999998865
No 54
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.04 E-value=0.00011 Score=64.33 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=92.4
Q ss_pred HHHHHHHhhccC-Cc--hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026311 91 TVVLQAATLGDF-PA--PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNAWAIKK 167 (240)
Q Consensus 91 ~~vl~~~~~~~~-~~--~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~ 167 (240)
+.+++++..++. .+ +..++..|+....+...+.......+.. . ..+ +... +..++...++-.+-++++++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~-~~~----~~~~-~~~~~~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-R-KIP----LKKY-AILSFLFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-C-cCh----HHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 445666665432 23 6788999999888776665554331111 0 011 1111 22333566777788899999
Q ss_pred cCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccccc
Q 026311 168 RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNI 226 (240)
Q Consensus 168 ~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~ 226 (240)
++...-.++....|+..++++++++|++.+..++.+.+++.+|+.+....+.++.++.+
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~ 146 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN 146 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence 99999999999999999999999999999999999999999999998876655444433
No 55
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.95 E-value=1.9e-05 Score=65.26 Aligned_cols=152 Identities=11% Similarity=0.103 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cccCchhHHHHHHHH
Q 026311 74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFP-APMSLCAITSLIGVFVTTVVELLQNHKLDFGW--EFVGLPETMSYIALG 150 (240)
Q Consensus 74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~-~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~i~l~~ 150 (240)
...|-+|+...+++=+.|.+..|+..+-.. .....+.|..+.+--.++.+++++|+..+-.. ..+.+. +.++ .-.
T Consensus 153 lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~-l~am-~IS 230 (309)
T COG5070 153 LNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDS-LMAM-FIS 230 (309)
T ss_pred cCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHH-HHHH-HHH
Confidence 457999999999999999998887653211 23667889999998888888888775321011 112221 2233 566
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccC
Q 026311 151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIG 227 (240)
Q Consensus 151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~ 227 (240)
|+++..--+.-.|.+|..+.+.-++...+.-.-..+-|.+++||+.+...+....+=...-.+....+.+++++++|
T Consensus 231 gl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~~ 307 (309)
T COG5070 231 GLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQKD 307 (309)
T ss_pred HHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77433333356689999999999999999999999999999999999999988877665544545555555554443
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.91 E-value=4.6e-05 Score=56.82 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+-+++|+++..++|+.+.+.+=.. ..+.-+...+.|++++||++++.+++|.++|+.|++..+..++
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 556788888888888888765433 4567788899999999999999999999999999999876543
No 57
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.90 E-value=0.0003 Score=62.41 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 149 LGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 149 ~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
.+++.=.-+-++++.+.+++..+.+.+.....-++.+++++++++|+.++.|++|..+.++|+.++.....
T Consensus 84 lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 84 LLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 34555557888999999999999999999999999999999999999999999999999999988766543
No 58
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.88 E-value=0.00029 Score=61.34 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMIN 154 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t 154 (240)
..|..++++++++|+......|...++.+ +....++.++++++.++++...... .++ . ..+... +..|+..
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~----~~~--~-~~~~~~-~~~g~~~ 81 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL----RFA--K-EQRLPL-LFYGVSL 81 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc----cCC--H-HHHHHH-HHHHHHH
Confidence 57899999999999999999888877774 8999999999999888765432111 111 1 112222 3344434
Q ss_pred HHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 155 GVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 155 ~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
+..+.++++++++.+++.++...+..|++..+++. |++. ...+.++.++|++++.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li~ 136 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFLL 136 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHheee
Confidence 55667888999999999999999999999988773 6554 3456677788887765
No 59
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.87 E-value=0.00012 Score=59.60 Aligned_cols=190 Identities=15% Similarity=0.185 Sum_probs=119.0
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHH
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (240)
|+.+...+-.|+.+++++.++||+.. .|++..++++.|++++...++. ......|....
T Consensus 82 asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN~---------------~a~e~iGi~~A 140 (290)
T KOG4314|consen 82 ASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADNE---------------HADEIIGIACA 140 (290)
T ss_pred hHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccch---------------hhhhhhhHHHH
Confidence 56677788899999999999999874 4789999999999888632221 12346899999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH-------HHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-H
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVF-------VTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-I 153 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l-------~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~ 153 (240)
+++++.-|+|-++-|+....-. -=...-++...|.. ..+++++ ++ .. +|+.-....|..+ .|. +
T Consensus 141 V~SA~~aAlYKV~FK~~iGnAn-~Gdaa~FmS~LGF~NL~~~~~~~lIL~~-T~--VE-~~qsFA~~PWG~l---~G~A~ 212 (290)
T KOG4314|consen 141 VGSAFMAALYKVLFKMFIGNAN-FGDAAHFMSCLGFFNLCFISFPALILAF-TG--VE-HLQSFAAAPWGCL---CGAAG 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHhhhHHHHHH-hc--hH-HHHHHhhCCchhh---hhHHH
Confidence 9999999999999998865421 11122222222211 1112221 11 11 2321000011111 122 1
Q ss_pred HHHHH-HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccc
Q 026311 154 NGVCQ-SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 154 t~ia~-~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
--++| .+.+.++....|-..|+-+.....--...+.++-+-..+...+.|..+|..|.+++..+..|
T Consensus 213 L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 213 LSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred HHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 12222 24456666777777777776666666778887766678888899999999999887665433
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.87 E-value=6e-05 Score=66.00 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHH-HHHHHHHHHHhCCC--ccc----hhhHHHHHHHHHHHHHhh
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIAT-VISVILSAITLGDS--IDI----GSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~P-v~a~l~~~l~lgE~--~~~----~~iiG~~lIl~Gv~l~~~ 216 (240)
+...-....|+++++.+++.+....+..= .++++-|.++++|. .+. ....|..+++.|+++...
T Consensus 222 ~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 222 TAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 45556666789999999998887777644 45667777788874 444 446677888899888654
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.66 E-value=0.0005 Score=61.13 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHH--HHHHHHHHH-HHHHhhcCCCccccc-ccCchhHHHHHHH
Q 026311 74 KIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAIT--SLIGVFVTT-VVELLQNHKLDFGWE-FVGLPETMSYIAL 149 (240)
Q Consensus 74 ~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~--~l~g~l~l~-~~~~~~~~~~~~~~~-~~~~~~~~~i~l~ 149 (240)
...|.++++++++||+.+.+-+|+ .|+++ .+.. |- .++..++.- ..+.+..++..-... ........+ +.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~--~l 78 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPV--FL 78 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHH--HH
Confidence 468999999999999999998887 45553 3332 32 112222111 111111222110111 111111222 23
Q ss_pred HHHHHHHHHHHHHHHHhhcCceeeee-chhHHHHHHHHHHHHHhCCCc---c----chhhHHHHHHHHHHHHHhhccc
Q 026311 150 GGMINGVCQSFNAWAIKKRGPVFVSM-FSPIATVISVILSAITLGDSI---D----IGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 150 ~gi~t~ia~~l~~~al~~~g~~~~s~-~~~l~Pv~a~l~~~l~lgE~~---~----~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
.|+.=.++...+..++|+.|.+++-. ..-++-+.+.+++.+++||-- + ..-++|.+++++|+++..+...
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445678889999999999986544 445678889999999999754 2 3467888999999999887443
No 62
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.66 E-value=0.001 Score=51.65 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-HHHH
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-INGV 156 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~i 156 (240)
.++.+.+..+-++-..+..|+.++..+++..+.+.+..|.+.+..+.++.++. + ++...+..++. |+|= ..++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~--~~~~~~~p~w~---~lGG~lG~~ 76 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP-S--LASLSSVPWWA---YLGGLLGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc-c--cchhccCChHH---hccHHHHHH
Confidence 35666777777777778888877765689999999999999988887776553 2 11111112322 3333 5556
Q ss_pred HHHHHHHHHhhcCceeeeechhH-HHHHHHHHHHH----HhCCCccchhhHHHHHHHHHHHH
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSPI-ATVISVILSAI----TLGDSIDIGSLSGMFLMFAGLYY 213 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~l-~Pv~a~l~~~l----~lgE~~~~~~iiG~~lIl~Gv~l 213 (240)
.-....+.+++.|++.+...... +-+.+.+++.+ .-.+++++..++|.++++.|+++
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 66677788999999877666554 66667777775 24578999999999999999863
No 63
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.49 E-value=4.8e-05 Score=56.78 Aligned_cols=43 Identities=23% Similarity=0.499 Sum_probs=38.4
Q ss_pred cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311 3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL 51 (240)
Q Consensus 3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~ 51 (240)
+++.+++|+|+.+++++++|||+++| +++|++++++|++++..
T Consensus 64 ~~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 64 AAIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 46778999999999999999999876 67999999999998864
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0004 Score=51.06 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
+-.++|.+...++|+++...+ +++.-+.-+...+.|++++||++++.+++|.+++++|+...+...
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 456788888899999887644 556667788889999999999999999999999999999887643
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.46 E-value=0.0013 Score=48.93 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHh
Q 026311 153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~ 215 (240)
+-+++|++...++|+.+...+ +++..+.-+...+.|++++||++++.+++|.++|+.|+...+
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 567789999999999988755 455557778889999999999999999999999999998864
No 66
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.40 E-value=0.00056 Score=50.52 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
+-+++|++...++|+++...+ +++.-+.-+...+.|++++||++++.+++|.++|+.|+...+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 567788888899998887754 4555578888999999999999999999999999999988754
No 67
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.39 E-value=0.00014 Score=61.78 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH-H
Q 026311 75 IIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-I 153 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-~ 153 (240)
..|..+.-.+ ..+....++.++..+. ||......-++.-.+...|..+..-.. -|-....--| . +.=|+ +
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~---v~gp~g~R~~-L--iLRg~mG 107 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP---VIGPEGKRKW-L--ILRGFMG 107 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee---eecCCCcEEE-E--Eeehhhh
Confidence 4677777777 7777788888877765 355554444333222222221111110 0100000001 1 12333 2
Q ss_pred HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
+ .+..+.++++++.+-+.+.+..+..|+++++++|.+++|+.+....+|..+-+.|++++.+..
T Consensus 108 ~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 108 F-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred h-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 2 334455688999999999999999999999999999999999999999999999999987764
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.37 E-value=0.0031 Score=54.21 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceeeeech-hHHHHHHHHHHHHHhCCCccchhhH----HHHHHHHHHHHHhhcccccc
Q 026311 149 LGGMINGVCQSFNAWAIKKRGPVFVSMFS-PIATVISVILSAITLGDSIDIGSLS----GMFLMFAGLYYVLWAKGKEN 222 (240)
Q Consensus 149 ~~gi~t~ia~~l~~~al~~~g~~~~s~~~-~l~Pv~a~l~~~l~lgE~~~~~~ii----G~~lIl~Gv~l~~~~~~~~~ 222 (240)
..|+.=.++...++++.++.|.+++-... .++-+.+.++|++++||.-+..+.+ +.+++++|+++..+++++++
T Consensus 50 lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 50 LSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc
Confidence 44555668899999999999999988877 4566668999999999987765544 77889999998776555444
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.24 E-value=0.059 Score=48.11 Aligned_cols=198 Identities=11% Similarity=0.053 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhhcc---cccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCcc-ccCCchHHHHHHHHHHHH
Q 026311 11 GLIFIIAWTFRLEKV---KLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNI-IFDREKIIGCVYLLAAVF 86 (240)
Q Consensus 11 i~t~i~a~~~~~E~l---~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~G~~l~l~aa~ 86 (240)
+...++..++++|.- +-++ ...-.+|+++.++|+++.... +.. + +++.+.. ..+.+...|.++++.+.+
T Consensus 112 v~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~A-g~~-k---~~~~~~~~~~~~~~~KGi~ialisgi 184 (345)
T PRK13499 112 IVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRA-GQL-K---ERKMGIKKAEEFNLKKGLILAVMSGI 184 (345)
T ss_pred HHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHh-hhh-c---ccccccccccccchHhHHHHHHHHHH
Confidence 445566777777643 2222 133567999999999887531 110 0 0000000 123456789999999999
Q ss_pred HHHHHH-------HHHHHhh-ccCCchhHHHHHHH---HHHHHHHH-HHHHh---hcCCCc--ccccccCchhHHHHH--
Q 026311 87 VLSSTV-------VLQAATL-GDFPAPMSLCAITS---LIGVFVTT-VVELL---QNHKLD--FGWEFVGLPETMSYI-- 147 (240)
Q Consensus 87 ~~a~~~-------vl~~~~~-~~~~~~~~~~~~~~---l~g~l~l~-~~~~~---~~~~~~--~~~~~~~~~~~~~i~-- 147 (240)
.+++|. ...+... .+. ++.....-|. +.|+...- +++.. .+++.+ .+...+....+-..+
T Consensus 185 ~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~ 263 (345)
T PRK13499 185 FSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLS 263 (345)
T ss_pred HHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHH
Confidence 999999 4332211 122 2333333333 35554433 33332 112111 011110000011210
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceeeee---ch-hHHHHHHHHHHHHHhCCCcc------chhhHHHHHHHHHHHHHhhc
Q 026311 148 ALGGMINGVCQSFNAWAIKKRGPVFVSM---FS-PIATVISVILSAITLGDSID------IGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 148 l~~gi~t~ia~~l~~~al~~~g~~~~s~---~~-~l~Pv~a~l~~~l~lgE~~~------~~~iiG~~lIl~Gv~l~~~~ 217 (240)
...|+.=.+++..|..+-++.|...... +. .+.-+++.+.|. ++||.=+ ...++|.++++.|..++..+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 1222233456667778888887665444 33 566689999998 5999888 67799999999998887654
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.00041 Score=60.78 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHH
Q 026311 73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPA-PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~-~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g 151 (240)
++..|..+.+.++++.+....++||-.+|.++ ...-. +. .... ++ ...+|.++ +.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~---------l~--~~~W~~G~-~~-- 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSY---------LR--RPLWWIGL-LL-- 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHH---------Hh--hHHHHHHH-HH--
Confidence 46789999999999999999999987554321 01100 00 0011 11 11123333 11
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 152 MINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 152 i~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
-+++......++...+++.++.+..+.-++..+++..++||+++..+++|.++++.|..++....
T Consensus 60 --~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 60 --MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred --HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 22333445566778888888888889999999999999999999999999999999987765433
No 71
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.17 E-value=0.00079 Score=48.58 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhCCCccchhhHHHHHH
Q 026311 153 INGVCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLGDSIDIGSLSGMFLM 207 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lI 207 (240)
+-+++++++.+++|+.+.+.+ +++..+..+...+.|.+++||++++.+++|..+|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 567889999999999999888 4556689999999999999999999999999876
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.11 E-value=0.00084 Score=57.09 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311 155 GVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS 224 (240)
Q Consensus 155 ~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 224 (240)
.+.-.+.+.++++.+|+.--+......+++.++++++++.+++..||++..+..+|+.++..+.....+.
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 3455677789999999999999999999999999999999999999999999999999988766554333
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.017 Score=45.23 Aligned_cols=137 Identities=11% Similarity=0.232 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHH
Q 026311 76 IGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMING 155 (240)
Q Consensus 76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ 155 (240)
...++.+.+..+-.+-+-+..|+.+...+|+....+.+..|++.+..+.++.+..+. +....+..|+.. .-|+..+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~--~a~~~~~pwW~~--~GG~lGa 80 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG--LAAVASAPWWAW--IGGLLGA 80 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhccCCchHHH--Hccchhh
Confidence 456667777777777777777877766568888899999999999888887544332 221122223332 2222222
Q ss_pred HHHHHHHHHHhhcCceee-eechhHHHHHHHHHHHHHhC----CCccchhhHHHHHHHHHHHHHhh
Q 026311 156 VCQSFNAWAIKKRGPVFV-SMFSPIATVISVILSAITLG----DSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 156 ia~~l~~~al~~~g~~~~-s~~~~l~Pv~a~l~~~l~lg----E~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
+--..-.....+.|++.. .....-+-+.+.+++.+=.. .++++..++|.+++++|+++..+
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 222233455677777633 33334456666766655433 57889999999999999666543
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.0038 Score=54.43 Aligned_cols=198 Identities=20% Similarity=0.213 Sum_probs=101.1
Q ss_pred cccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcC-CCCccccCCchHHHHHHH
Q 026311 3 TAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSV-NTPNIIFDREKIIGCVYL 81 (240)
Q Consensus 3 ~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~-~~~~~~~~~~~~~G~~l~ 81 (240)
+-+.++.-++.++++..++|||++++ -.+|+.+|++|..+++.. +|..+...+. +-.....+..+..-..+.
T Consensus 94 tPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h-aP~e~~i~t~~el~~~~~~~~Fliy~~~i 166 (335)
T KOG2922|consen 94 TPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH-APKEQEIESVEEVWELATEPGFLVYVIII 166 (335)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe-cCcccccccHHHHHHHhcCccHHHHHHHH
Confidence 34556777888999999999999976 469999999999998854 3321110000 000000122222222222
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH-----H--HHHhhcCCCcccccccCchhHHHHHHHHHHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTT-----V--VELLQNHKLDFGWEFVGLPETMSYIALGGMIN 154 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~-----~--~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t 154 (240)
++..+. -....++ ++...+.+.......++|+.-.. - +-.......+ .. .+..|..+ +..+.+.
T Consensus 167 il~~~i---l~~~~~p-~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~q--l~--~~~ty~~~-l~~~~~~ 237 (335)
T KOG2922|consen 167 ILIVLI---LIFFYAP-RYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQ--LF--YPLTWIFL-LVVATCV 237 (335)
T ss_pred HHHHHH---Hheeecc-cccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcc--cc--cHHHHHHH-HHHHHHH
Confidence 211111 0111111 11111334343444444422100 0 0011111111 11 11122221 2222255
Q ss_pred HHHHHHHHHHHhhcCceeeeechhHH-HHHHHHHHHHHhCCCcc--c----hhhHHHHHHHHHHHHHhh
Q 026311 155 GVCQSFNAWAIKKRGPVFVSMFSPIA-TVISVILSAITLGDSID--I----GSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 155 ~ia~~l~~~al~~~g~~~~s~~~~l~-Pv~a~l~~~l~lgE~~~--~----~~iiG~~lIl~Gv~l~~~ 216 (240)
..-....|+|++...++.++...|.. -.++++-|.+++.|--. . ..+.|...++.|+++...
T Consensus 238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~ 306 (335)
T KOG2922|consen 238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHR 306 (335)
T ss_pred HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeee
Confidence 55566678999999999887777764 44567777888888443 3 456788888999887643
No 75
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.58 E-value=0.0012 Score=48.96 Aligned_cols=43 Identities=26% Similarity=0.563 Sum_probs=37.6
Q ss_pred ccccCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 2 ATAMPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 2 a~~i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
++.+.++.|+++.++++++++||++++ +++|+++.+.|++++.
T Consensus 83 ~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 83 VSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 466788999999999999999998865 6899999999998763
No 76
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.29 E-value=0.0019 Score=48.19 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=35.1
Q ss_pred cCcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 5 MPNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 5 i~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
+.++.|+++.++++++++||++++ |++|+.+.+.|++++.
T Consensus 69 ~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 69 MLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 345789999999999999999876 6899999999998764
No 77
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.92 E-value=0.0035 Score=55.68 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcc
Q 026311 154 NGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESD 233 (240)
Q Consensus 154 t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~ 233 (240)
=.+|-+.++.+++....+...+.....-+|+..+|.++.+|++++...++.++-+.|++++++++.++ .++.+
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-------~~~~~ 241 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-------NSDLP 241 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-------cccCC
Confidence 34677889999999999999999999999999999999999999999999999999999988776544 33445
Q ss_pred cCCCCC
Q 026311 234 AENPLL 239 (240)
Q Consensus 234 ~~~~~~ 239 (240)
|++|++
T Consensus 242 a~~~ll 247 (416)
T KOG2765|consen 242 ASRPLL 247 (416)
T ss_pred ccchhH
Confidence 566653
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.0071 Score=51.00 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHH
Q 026311 77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGV 156 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~i 156 (240)
..++.++-++.|+..-....|... +|.+- ...+.+|++.....-+++..+.. .++ ....++ ..|.-=.+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ-~lGtT~GALifaiiv~~~~~p~~-T~~----~~iv~~--isG~~Ws~ 71 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQ-TLGTTLGALIFAIIVFLFVSPEL-TLT----IFIVGF--ISGAFWSF 71 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHh-hhhccHHHHHHHHHHheeecCcc-chh----hHHHHH--HhhhHhhh
Confidence 356778888999987666544322 23433 33445666555544443322211 222 112221 23333346
Q ss_pred HHHHHHHHHhhcCceeeeechh-HHHHHHHHHHHHHhCCCccchhhH----HHHHHHHHHHHHhh
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSP-IATVISVILSAITLGDSIDIGSLS----GMFLMFAGLYYVLW 216 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~-l~Pv~a~l~~~l~lgE~~~~~~ii----G~~lIl~Gv~l~~~ 216 (240)
++..++++++..|.+++..... .+-+-+.++|++.+||--+..+++ +.++++.|+++..+
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence 7888999999999999887765 467778999999999999887753 45778888877544
No 79
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.04 Score=48.74 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcccCCCC
Q 026311 159 SFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPL 238 (240)
Q Consensus 159 ~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
.+++.+..+.+|+.-.+...+-.+.+.++..++++++++..||...++...|+.++..+.....+ +.++++++||.
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~----a~~~~~~~n~~ 182 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG----AKSESSAQNPF 182 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC----ccCCCcccchh
Confidence 47778899999999999999999999999999999999999999999999999998743332222 22255556664
No 80
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.79 E-value=0.089 Score=39.28 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 026311 83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGMINGVCQSFNA 162 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi~t~ia~~l~~ 162 (240)
+-+++|++-+-+.||-.+..++ ..-.. |....... ++. .|+. +...+ ....+-.+|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~-~~~~~-~~~~~~~~-----Ll~------n~~y-----~ipf~-----lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEK-VKASL-QLLQEIKF-----LLL------NPKY-----IIPFL-----LNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCC-ccchH-HHHHHHHH-----HHH------hHHH-----HHHHH-----HHHHHHHHHH
Confidence 3467899888888887765432 21111 32222111 111 2331 11111 2334556777
Q ss_pred HHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311 163 WAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY 213 (240)
Q Consensus 163 ~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l 213 (240)
+.+++.+-+.+... +.+.=+++++.++++.+|..+...++|+++++.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 88999999988888 5889999999998877777788899999999999864
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.32 E-value=0.0041 Score=52.36 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHH
Q 026311 71 DREKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALG 150 (240)
Q Consensus 71 ~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 150 (240)
.++...|...++.+.+.|-.|.++.+...-+--+.+--.+..|..+++.+ ...-++...-.. .+..+ ..
T Consensus 147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~---~~~~~~~~~~K~------t~~ni--i~ 215 (288)
T COG4975 147 PSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL---GFFKMEKRFNKY------TWLNI--IP 215 (288)
T ss_pred hHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH---hhcccccchHHH------HHHHH--hh
Confidence 34556899999999999999999866543211123334455555554443 222111111011 12221 23
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchh----hHHHHHHHHHHHHH
Q 026311 151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGS----LSGMFLMFAGLYYV 214 (240)
Q Consensus 151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~----iiG~~lIl~Gv~l~ 214 (240)
|+.=+++-..+..+.++.|....=.++-+.-+++.+-|.++++|+-|..+ ++|.++++.|..+.
T Consensus 216 G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 216 GLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 33234566667778889998888888889999999999999999999765 56777777775543
No 82
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.16 E-value=0.44 Score=42.24 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHH-HHHHHHHHHHHHHHHH--HhhcCCCcccccccCchhHHHHHHH
Q 026311 73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSL-CAITSLIGVFVTTVVE--LLQNHKLDFGWEFVGLPETMSYIAL 149 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~-~~~~~l~g~l~l~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~ 149 (240)
+-..|.++..++++|-+.+-+=.||. |+++ .+. =..|.+++-+. +|.. .+.-++..--....+...+... .+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~-~l 78 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWT-FL 78 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHH-HH
Confidence 34689999999999999988877774 4553 322 22355555443 3332 2222222101111111122222 22
Q ss_pred HHHHHHHHHHHHHHHHhhcCcee-eeechhHHHHHHHHHHHHHhCC-------CccchhhHHHHHHHHHHHHHhhcccc
Q 026311 150 GGMINGVCQSFNAWAIKKRGPVF-VSMFSPIATVISVILSAITLGD-------SIDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 150 ~gi~t~ia~~l~~~al~~~g~~~-~s~~~~l~Pv~a~l~~~l~lgE-------~~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
.|+-=+++-..|-.++|++|-+. .++..-+.-+++.++--++.|+ +-....++|.++.++|+.+.-+...+
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 33323345556678889998863 3444555566666665555432 23457789999999999998765443
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.57 E-value=0.045 Score=48.22 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSST-VVLQAATLG--DFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGG 151 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~-~vl~~~~~~--~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g 151 (240)
..++......-.+-+++ +++.|...+ +.+.|..+|..+...+.+.+...-.+-..+.. ... ....+..+ +-+|
T Consensus 15 ~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~-~~~--~~~~~~~l-lpl~ 90 (316)
T KOG1441|consen 15 ILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS-KIS--SKLPLRTL-LPLG 90 (316)
T ss_pred hHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC-ccc--cccchHHH-HHHH
Confidence 34444433333333332 334555556 45567888888777777776655544222221 111 11223343 4555
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhh
Q 026311 152 MINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSL 201 (240)
Q Consensus 152 i~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~i 201 (240)
+...++..+=+.++++.+.+..-+...++|++.+++++++.+|+.+....
T Consensus 91 ~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~ 140 (316)
T KOG1441|consen 91 LVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTY 140 (316)
T ss_pred HHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEE
Confidence 55667777888999999999999999999999999999999999887443
No 84
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.35 E-value=0.35 Score=40.83 Aligned_cols=129 Identities=8% Similarity=0.038 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhhcc-CC--c--------hhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH--
Q 026311 86 FVLSSTVVLQAATLGD-FP--A--------PMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM-- 152 (240)
Q Consensus 86 ~~~a~~~vl~~~~~~~-~~--~--------~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi-- 152 (240)
+||=.|-+.|.|..+. |. + .+.+...||..-.+..=++..+.... .++-. + . + .|.+-
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~-~~D~t-~--~-~----~YaAcs~ 93 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT-EIDNT-P--T-K----MYAACSA 93 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc-cccCC-c--c-h----HHHHHHH
Confidence 6788888888887643 32 1 24455667766655543332222211 00111 0 0 1 23322
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENY 223 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~ 223 (240)
.-.++..--|.++|..+=-..-+-..--|+=-+++|+++.+.+-+|....=..+|+.|+.+..++++|...
T Consensus 94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 22344445567777776555555666778888999999999999999999999999999999987665443
No 85
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.55 E-value=0.071 Score=43.72 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhc
Q 026311 157 CQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 157 a~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~ 217 (240)
+-++|..++++++|+.++...--.-.+..+++++.+|+++....++..++.+.|+.++.+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 5668889999999999999999999999999999999999999999999999998776543
No 86
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=89.41 E-value=1.2 Score=39.12 Aligned_cols=69 Identities=10% Similarity=0.205 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 151 GMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 151 gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
|++|++--.+=||+++...-+.-++...-.+++-.++|.++-=|+++|....-..+|.+|+++..+++.
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 346777788899999999999999999999999999999999999999999999999999988877543
No 87
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=88.91 E-value=0.41 Score=35.07 Aligned_cols=30 Identities=17% Similarity=0.459 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311 185 VILSAITLGDSIDIGSLSGMFLMFAGLYYV 214 (240)
Q Consensus 185 ~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~ 214 (240)
+.++++++||+++|.++.|.++++.+++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 566788999999999999999999998764
No 88
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.61 E-value=0.053 Score=47.45 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCchhHHHHHHHHHH
Q 026311 73 EKIIGCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGLPETMSYIALGGM 152 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~gi 152 (240)
++..|..+.+.+.+..+...++.|+-.+|.. . +..- .-+++.. +- ..+.+|.++ +-.++
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~------~~~r----------a~~gg~~--yl-~~~~Ww~G~-ltm~v 76 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A------SGLR----------AGEGGYG--YL-KEPLWWAGM-LTMIV 76 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHh-h------hccc----------ccCCCcc--hh-hhHHHHHHH-HHHHH
Confidence 3456777777777777777777665544321 0 0000 0011111 11 112234443 33333
Q ss_pred HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+-..-|. +..-.+++.++....+.-++.++++..+++|++++...+|+++.++|-.+......
T Consensus 77 Gei~NFa----AYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 77 GEIANFA----AYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HhHhhHH----HHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 3333333 33556888899999999999999999999999999999999999999666544333
No 89
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=87.94 E-value=0.27 Score=37.64 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHH--HhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 7 NLAPGLIFIIAWT--FRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 7 ~~~Pi~t~i~a~~--~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
+..+.++.+.++. +++|+++++ |++|+.+-++|++++.
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 3445555556653 789999876 6899999999998875
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.43 E-value=2.3 Score=36.41 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHh
Q 026311 78 CVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELL 126 (240)
Q Consensus 78 ~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~ 126 (240)
.+-++.|+++++...+=.||.... |++....+++...-+......++
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~ 48 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLI 48 (254)
T ss_pred chhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888777666654322 67766555554433333333333
No 91
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.35 E-value=1.5 Score=31.74 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 184 SVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 184 a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
-+.++++.++|++.|.++.|.+++..|++.+-+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 466889999999999999999999999987643
No 92
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=87.24 E-value=0.54 Score=35.52 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
+.+.++++++++|+++++ |++|+.+-+.|++.+-
T Consensus 69 v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 69 LFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 456778899999999876 6899999999998774
No 93
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=86.38 E-value=3.1 Score=33.03 Aligned_cols=93 Identities=25% Similarity=0.305 Sum_probs=58.3
Q ss_pred HHHHHHHHH-hhhcccccccCCcchhhhHHH-------hhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHH
Q 026311 12 LIFIIAWTF-RLEKVKLSCLYSKVKILGTLL-------CVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLA 83 (240)
Q Consensus 12 ~t~i~a~~~-~~E~l~~~~~~~~~~~~Gi~l-------~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (240)
|..+++... +.|-+-+|..|...+.+|+.+ +..|+.++.... +.++.......+.
T Consensus 77 fIlVIAv~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-----------------~~~f~qsv~~gf~ 139 (193)
T COG4657 77 FILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-----------------GHNFLQSVVYGFG 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-----------------hhhHHHHHHHHhh
Confidence 445555554 567777777788888888775 566777664321 2234556777778
Q ss_pred HHHHHHHHHHHHHHhhcc-----CCchhHHHHHHHHHHHHHHH
Q 026311 84 AVFVLSSTVVLQAATLGD-----FPAPMSLCAITSLIGVFVTT 121 (240)
Q Consensus 84 aa~~~a~~~vl~~~~~~~-----~~~~~~~~~~~~l~g~l~l~ 121 (240)
+++.|++-.++....++| .|.|+.-+.+.+..++++.+
T Consensus 140 a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSl 182 (193)
T COG4657 140 AALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSL 182 (193)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHH
Confidence 888888877776555543 34555555556555555443
No 94
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=86.31 E-value=0.64 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
+.+.+.++++++|+++.+ |++|+.+-+.|++.+-
T Consensus 69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 456778899999999865 7899999999998763
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.48 E-value=0.63 Score=35.24 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhccccccccccCC-CCCcccCCCCC
Q 026311 202 SGMFLMFAGLYYVLWAKGKENYSNIGS-ESESDAENPLL 239 (240)
Q Consensus 202 iG~~lIl~Gv~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 239 (240)
.|.+++++.++...++++|+.+...+. .+|.|.+.||-
T Consensus 75 aGvIg~Illi~y~irR~~Kk~~~~~~p~P~~~d~~~p~~ 113 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKSSSDVQPLPEEDDTDVPLS 113 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---------------------
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Confidence 444445554444444444444333333 44557777763
No 96
>PRK02237 hypothetical protein; Provisional
Probab=85.41 E-value=1.5 Score=32.32 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 182 VISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 182 v~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+.+.+.++.+-|++++...++|+++.++|+.++.+.+|
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 35667788888999999999999999999988876654
No 97
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=85.38 E-value=0.78 Score=34.08 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhh
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMG 50 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~ 50 (240)
+.+.+.++++++|++++. |++|+.+-+.|++.+-
T Consensus 69 v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 345778899999999875 6899999999998874
No 98
>PRK11431 multidrug efflux system protein; Provisional
Probab=85.20 E-value=0.8 Score=33.72 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhh
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTM 49 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l 49 (240)
+.+.+.++++++|++++. |++|+.+-+.|++.+
T Consensus 68 v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 68 VGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 456778899999999875 689999999999876
No 99
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=85.20 E-value=0.78 Score=34.03 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhh
Q 026311 11 GLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTM 49 (240)
Q Consensus 11 i~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l 49 (240)
+.+.+.++++++|+++++ |++|+.+-+.|++.+
T Consensus 74 v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 74 AATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 345678888899998875 689999999999765
No 100
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.68 E-value=1.8 Score=31.81 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 182 VISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 182 v~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+.+.+.++.+-|++++...++|+++.++|+.++.+.+|
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 35667788888999999999999999999998877654
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.25 E-value=30 Score=30.48 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=74.3
Q ss_pred HHHHHhhccCCchh--HHHHHHHHHHHHHHHHHHHh--hcCCCcccccccCchhHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 026311 93 VLQAATLGDFPAPM--SLCAITSLIGVFVTTVVELL--QNHKLDFGWEFVGLPETMSYIALGGM-INGVCQSFNAWAIKK 167 (240)
Q Consensus 93 vl~~~~~~~~~~~~--~~~~~~~l~g~l~l~~~~~~--~~~~~~~~~~~~~~~~~~~i~l~~gi-~t~ia~~l~~~al~~ 167 (240)
+..|-....++-|. .....|.+...+.....-.. .+.+ +.+|.........++ +|.+- -|+. +++++
T Consensus 29 vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~-~l~~~~~kk~~P~~~-lf~~~i~t~~------~slk~ 100 (314)
T KOG1444|consen 29 VVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFR-PLDLRTAKKWFPVSL-LFVGMLFTGS------KSLKY 100 (314)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecC-CcChHHHHHHccHHH-HHHHHHHHcc------ccccc
Confidence 33444444444334 44459999887776655443 1211 124432111112344 44433 3332 56889
Q ss_pred cCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311 168 RGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV 214 (240)
Q Consensus 168 ~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~ 214 (240)
.......++-.+.|+..++....++|-+++...+.....+.+|-...
T Consensus 101 lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 101 LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888886554
No 102
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=78.86 E-value=41 Score=31.91 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=22.7
Q ss_pred eechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 174 SMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 174 s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
..+....|+-+.+.|.+.=.-.++....++++.++++..+..+.+
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~ 394 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFP 394 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445677777777654333333344445544444444443333
No 103
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=71.91 E-value=3.6 Score=35.63 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=49.0
Q ss_pred HHHHHhhc-CceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcccccccc
Q 026311 161 NAWAIKKR-GPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYS 224 (240)
Q Consensus 161 ~~~al~~~-g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~ 224 (240)
.|++++.- +-..=-++-.-.++..++++++++|.+-+..|+...+++-+|+++....+.++.+.
T Consensus 81 NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 81 NNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred ccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34444432 33334456677889999999999999999999999999999999988776655443
No 104
>PRK10489 enterobactin exporter EntS; Provisional
Probab=71.54 E-value=75 Score=28.35 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHhhccccccccccC-CCCCcc
Q 026311 200 SLSGMFLMFAGLYYVLWAKGKENYSNIG-SESESD 233 (240)
Q Consensus 200 ~iiG~~lIl~Gv~l~~~~~~~~~~~~~~-~~~~~~ 233 (240)
.+.|+...+.++......++.++++++| +++.||
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 3455555566665555444444444444 333343
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=69.49 E-value=5 Score=34.93 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 179 IATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 179 l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
-.-++.-+++.-+++.+++..||+|...+.+|+.++-.
T Consensus 121 aviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred chhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 35678899999999999999999999999999987643
No 106
>PF15102 TMEM154: TMEM154 protein family
Probab=69.45 E-value=4.2 Score=31.67 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhccccccccccC
Q 026311 204 MFLMFAGLYYVLWAKGKENYSNIG 227 (240)
Q Consensus 204 ~~lIl~Gv~l~~~~~~~~~~~~~~ 227 (240)
.++++..++++.+.|||+.|+++.
T Consensus 69 vlLLl~vV~lv~~~kRkr~K~~~s 92 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRTKQEPS 92 (146)
T ss_pred HHHHHHHHHheeEEeecccCCCCc
Confidence 344555566665555555544433
No 107
>COG1971 Predicted membrane protein [Function unknown]
Probab=69.43 E-value=4.8 Score=32.83 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=33.7
Q ss_pred eechhHHHHHHHHHHHHHhCCCccchhhHHHH-HHHHHHHHHhhccccccccccC
Q 026311 174 SMFSPIATVISVILSAITLGDSIDIGSLSGMF-LMFAGLYYVLWAKGKENYSNIG 227 (240)
Q Consensus 174 s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~-lIl~Gv~l~~~~~~~~~~~~~~ 227 (240)
+.+..+.|+.+...+.++=+=.-.+.+|+|.+ +++.|+.+..-.-++++++.+|
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~~~~~~~~ 98 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKNEEDEFVD 98 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcchhc
Confidence 34556788888888877654445567766665 4678887765443443333333
No 108
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=69.04 E-value=3.6 Score=31.41 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=14.2
Q ss_pred eeeechhHHHHHHHHHHHHH
Q 026311 172 FVSMFSPIATVISVILSAIT 191 (240)
Q Consensus 172 ~~s~~~~l~Pv~a~l~~~l~ 191 (240)
+++.+.|+.|+.+.+.+.++
T Consensus 69 ~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888887653
No 109
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=68.89 E-value=6.8 Score=24.77 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhccccccccccCC
Q 026311 206 LMFAGLYYVLWAKGKENYSNIGS 228 (240)
Q Consensus 206 lIl~Gv~l~~~~~~~~~~~~~~~ 228 (240)
+++.|+.+.+..|++..|.+.|.
T Consensus 13 ~~lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHHHhhccccccccCC
Confidence 34566666666677777766664
No 110
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=65.66 E-value=4.5 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhh
Q 026311 8 LAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTM 49 (240)
Q Consensus 8 ~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l 49 (240)
+.=+||++.++++.+|..+++ .++|+.+...|+.+.
T Consensus 77 l~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 77 LAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 445678888877766555433 579999999998754
No 111
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=65.40 E-value=6.3 Score=28.07 Aligned_cols=28 Identities=32% Similarity=0.227 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHhhhcccccccCCcchhhhHHH
Q 026311 8 LAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLL 41 (240)
Q Consensus 8 ~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l 41 (240)
+..+.+.+.+.++++|+++++ |++|+.+
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 345567888999999999876 5677654
No 112
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=65.11 E-value=6.2 Score=32.62 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=27.9
Q ss_pred eeeeechhHHHHHHHHHHHHHhCCCcc-chhhHHH-HHHHHHHHHHh
Q 026311 171 VFVSMFSPIATVISVILSAITLGDSID-IGSLSGM-FLMFAGLYYVL 215 (240)
Q Consensus 171 ~~~s~~~~l~Pv~a~l~~~l~lgE~~~-~~~iiG~-~lIl~Gv~l~~ 215 (240)
...+.+..+.|..+..+|..+-+--.. +.+++|+ .++..|+.+..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 344555667888888888765433223 3456665 45678877764
No 113
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=59.93 E-value=6.6 Score=30.55 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=13.8
Q ss_pred eeeeechhHHHHHHHHHHHHH
Q 026311 171 VFVSMFSPIATVISVILSAIT 191 (240)
Q Consensus 171 ~~~s~~~~l~Pv~a~l~~~l~ 191 (240)
-+.+...|+.|+++.+.+.++
T Consensus 75 L~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 75 LKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888877776654
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=57.59 E-value=34 Score=25.28 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH
Q 026311 158 QSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV 214 (240)
Q Consensus 158 ~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~ 214 (240)
-.+|++.+++.+-+.+..+ +.+.-.+..+.|..+-.|...-..++|..++++|+.+.
T Consensus 66 Saly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3456677889988876655 55677788899986444455567889999999998764
No 115
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=56.31 E-value=41 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=19.8
Q ss_pred ccchhhHHHHHHHHHHHHHhhccc
Q 026311 196 IDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 196 ~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
++..|++...++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999888765443
No 116
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=55.53 E-value=11 Score=32.51 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=20.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccccc
Q 026311 196 IDIGSLSGMFLMFAGLYYVLWAKGKEN 222 (240)
Q Consensus 196 ~~~~~iiG~~lIl~Gv~l~~~~~~~~~ 222 (240)
+|..|+++..+++.|+.+..++++|++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~~~~~ 261 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRRKKGI 261 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 688999999999999887655444333
No 117
>PRK11469 hypothetical protein; Provisional
Probab=54.90 E-value=12 Score=30.47 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=27.8
Q ss_pred eechhHHHHHHHHHHHHHhCCCccchhhHHHHH-HHHHHHHHh
Q 026311 174 SMFSPIATVISVILSAITLGDSIDIGSLSGMFL-MFAGLYYVL 215 (240)
Q Consensus 174 s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~l-Il~Gv~l~~ 215 (240)
+.+..+.|..+...|..+-+=...+.+++|..+ +..|..+..
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888888888766544444566777654 567877764
No 118
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.33 E-value=4.4 Score=35.15 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCceeeeechhH
Q 026311 154 NGVCQSFNAWAIKKRGPVFVSMFSPI 179 (240)
Q Consensus 154 t~ia~~l~~~al~~~g~~~~s~~~~l 179 (240)
-+++-++|.|.+|+.|++.-.+..+.
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFC 143 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34556667789999999766655443
No 119
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=51.81 E-value=9.1 Score=30.13 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=10.4
Q ss_pred eechhHHHHHHHHHHHH
Q 026311 174 SMFSPIATVISVILSAI 190 (240)
Q Consensus 174 s~~~~l~Pv~a~l~~~l 190 (240)
+.+.|+.|+++++.+..
T Consensus 78 a~lvYllPLl~li~ga~ 94 (154)
T PRK10862 78 ALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455777777666644
No 120
>PRK11010 ampG muropeptide transporter; Validated
Probab=51.04 E-value=2.1e+02 Score=26.57 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHhh
Q 026311 200 SLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 200 ~iiG~~lIl~Gv~l~~~ 216 (240)
..+..++.+.|+.+..+
T Consensus 385 f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 385 YLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555666555543
No 121
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=49.94 E-value=1.2e+02 Score=23.41 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=43.3
Q ss_pred HHHHH-HHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHH-HHHHHHHHhhccccccc
Q 026311 148 ALGGM-INGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFL-MFAGLYYVLWAKGKENY 223 (240)
Q Consensus 148 l~~gi-~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~l-Il~Gv~l~~~~~~~~~~ 223 (240)
..+.+ +.+.-|..-.+..||.|.++.+.... ..+.+.+.+++. ++ |..+ -+.|.++.++-++|+.+
T Consensus 37 ~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga---~iG~IvG~f~~~-p~------G~iiG~~~Ga~l~El~~~~~~~ 104 (140)
T PF04306_consen 37 AVLALLGEVLDYLAGAYGAKRFGASRWGIWGA---IIGGIVGFFVLP-PL------GLIIGPFLGAFLGELLRGKDFR 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHHHHHhh-HH------HHHHHHHHHHHHHHHHhCCCHH
Confidence 34445 78888999999999999988887744 467777766554 11 3332 45667776664444433
No 122
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=49.60 E-value=26 Score=25.39 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=9.4
Q ss_pred CCCCCcccCCCCCC
Q 026311 227 GSESESDAENPLLS 240 (240)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (240)
+.+++....+|||+
T Consensus 84 ~~~~~d~EraPLLn 97 (97)
T PF08611_consen 84 EAESTDRERAPLLN 97 (97)
T ss_pred ccCCCccccccccC
Confidence 34456666789986
No 123
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=48.07 E-value=1.9e+02 Score=25.35 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhh
Q 026311 183 ISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 183 ~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~ 216 (240)
...+.|++.-.-..+...++++++.++++.....
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554432222344445555555556555443
No 124
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=47.94 E-value=15 Score=26.95 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 183 ISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 183 ~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
.+.+..++.=|.+++.+.++|.++.++|+.++..+++
T Consensus 71 ~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 71 ASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 4556666677889999999999999999887776654
No 125
>PRK01637 hypothetical protein; Reviewed
Probab=45.27 E-value=31 Score=29.80 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=19.9
Q ss_pred chhhHHHHHHHHHHHHHhhccccccccccCCCCCcccC
Q 026311 198 IGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAE 235 (240)
Q Consensus 198 ~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
|..+.+.++++++-+-..+.+.|+.++-.+.||+.+||
T Consensus 248 Wlyl~~~ilL~Gaelna~~~~~~~~~~~~~~~~~~~~~ 285 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLGEYRKLKQAAEQEEDDEPK 285 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC
Confidence 44455556555555544454555444444455555555
No 126
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=42.97 E-value=38 Score=18.84 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=7.4
Q ss_pred cchhhHHHHHHHHHH
Q 026311 197 DIGSLSGMFLMFAGL 211 (240)
Q Consensus 197 ~~~~iiG~~lIl~Gv 211 (240)
.+..++|.+++..+.
T Consensus 11 ~~~~~~G~~l~~~~~ 25 (34)
T TIGR01167 11 SLLLLLGLLLLGLGG 25 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566664444433
No 127
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=42.58 E-value=2.3e+02 Score=24.58 Aligned_cols=100 Identities=11% Similarity=0.081 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCc-hhHHHHHHHHHHHHH
Q 026311 77 GCVYLLAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVELLQNHKLDFGWEFVGL-PETMSYIALGGMING 155 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~gi~t~ 155 (240)
=..+++.++++--.+.-+.|.+-...+ +.-.+.+-..+++++++.+. + .|....+ ..+..+ +..|++.+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~----R----Pwr~r~~~~~~~~~-~~yGvsLg 82 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF----R----PWRRRLSKPQRLAL-LAYGVSLG 82 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh----h----HHHhccChhhhHHH-HHHHHHHH
Confidence 356667777776666666666666654 67777888888887766542 1 2221111 224444 45566555
Q ss_pred HHHHHHHHHHhhcCceeeeechhHHHHHHHH
Q 026311 156 VCQSFNAWAIKKRGPVFVSMFSPIATVISVI 186 (240)
Q Consensus 156 ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l 186 (240)
.-.++++.++++++-..+-...+..|+.-.+
T Consensus 83 ~MNl~FY~si~riPlGiAVAiEF~GPL~vA~ 113 (292)
T COG5006 83 GMNLLFYLSIERIPLGIAVAIEFTGPLAVAL 113 (292)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccHHHHHH
Confidence 6667788999999999999999999987543
No 128
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=42.50 E-value=28 Score=28.68 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=16.3
Q ss_pred HhCCCccchhhHHHHHH-HHHHHHHh
Q 026311 191 TLGDSIDIGSLSGMFLM-FAGLYYVL 215 (240)
Q Consensus 191 ~lgE~~~~~~iiG~~lI-l~Gv~l~~ 215 (240)
++|=+++-.++.|+.+. +.|+=+.+
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 46777887888887654 35555443
No 129
>PRK11111 hypothetical protein; Provisional
Probab=42.49 E-value=31 Score=28.73 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.9
Q ss_pred HhCCCccchhhHHHHHH-HHHHHHH
Q 026311 191 TLGDSIDIGSLSGMFLM-FAGLYYV 214 (240)
Q Consensus 191 ~lgE~~~~~~iiG~~lI-l~Gv~l~ 214 (240)
++|=+++-.++.|+++. +.|+=+.
T Consensus 70 ~fGIsl~afrIaGGiiL~~ial~Ml 94 (214)
T PRK11111 70 LFGISIDSFRIAGGILVVTIAMSMI 94 (214)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888887654 3555543
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=39.45 E-value=42 Score=22.49 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHH-hhccccccccccCCCCCc
Q 026311 200 SLSGMFLMFAGLYYV-LWAKGKENYSNIGSESES 232 (240)
Q Consensus 200 ~iiG~~lIl~Gv~l~-~~~~~~~~~~~~~~~~~~ 232 (240)
.+++.+++++|+++. .+.|++..+....|.|++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y 39 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPSTENY 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCchhhc
Confidence 355666666666554 344444444333332443
No 131
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=39.27 E-value=26 Score=30.18 Aligned_cols=25 Identities=20% Similarity=0.640 Sum_probs=20.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccc
Q 026311 196 IDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 196 ~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
++..|+++..+++.|+.+..+.+++
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~~~~ 261 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWAYRK 261 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999998877655443
No 132
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.11 E-value=30 Score=30.22 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccccC
Q 026311 199 GSLSGMFLMFAGLYYVLWAKGKENYSNIG 227 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~ 227 (240)
.|++...+|++|+....+.++|.+++++.
T Consensus 255 gqilSi~mIl~Gi~~~~~~~~k~~~~~~~ 283 (287)
T COG0682 255 GQILSIPMILLGLWLIIYLYKKAKKKPEY 283 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 79999999999999888777665555433
No 133
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=38.98 E-value=44 Score=27.74 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 026311 82 LAAVFVLSSTVVLQAATLGD 101 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~ 101 (240)
+.++++|..|... |.+.+|
T Consensus 2 lIs~isf~gYia~-r~~G~r 20 (211)
T PF13194_consen 2 LISGISFAGYIAV-RLLGPR 20 (211)
T ss_pred eeehhhHHHHHHH-HHHccc
Confidence 3567778877654 444443
No 134
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=37.32 E-value=2.5e+02 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.168 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHh
Q 026311 200 SLSGMFLMFAGLYYVL 215 (240)
Q Consensus 200 ~iiG~~lIl~Gv~l~~ 215 (240)
..--+++++.|+.+..
T Consensus 187 ~lppGaF~~lg~l~a~ 202 (231)
T PRK12405 187 ILPPGAFIGLGLLLAL 202 (231)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3445567777776654
No 135
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=37.08 E-value=76 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHH
Q 026311 200 SLSGMFLMFAGLYYV 214 (240)
Q Consensus 200 ~iiG~~lIl~Gv~l~ 214 (240)
.++|..++..|++.+
T Consensus 89 ~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 136
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=37.03 E-value=1.1e+02 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.5
Q ss_pred ccchhhHHHHHHHHHHHHHhhccc
Q 026311 196 IDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 196 ~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+|..|++...+++.|+.+..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999887655443
No 137
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=36.74 E-value=49 Score=19.34 Aligned_cols=19 Identities=5% Similarity=-0.235 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026311 76 IGCVYLLAAVFVLSSTVVL 94 (240)
Q Consensus 76 ~G~~l~l~aa~~~a~~~vl 94 (240)
.=.++-++.|.+|++|++.
T Consensus 6 liVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 6 LVIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3456667889999999986
No 138
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.57 E-value=19 Score=31.40 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCc-c---cccccCc--hhH--HHHHHHHHHHHHHHHHHHHHHHhhcCceeeee
Q 026311 104 APMSLCAITSLIGVFVTTVVELLQNHKLD-F---GWEFVGL--PET--MSYIALGGMINGVCQSFNAWAIKKRGPVFVSM 175 (240)
Q Consensus 104 ~~~~~~~~~~l~g~l~l~~~~~~~~~~~~-~---~~~~~~~--~~~--~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~ 175 (240)
.|+-.+.+|++....+...++-....-+. . ..+.... ... +++ +|. ..-..-+..++..|.+.--+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv-Vfi-----~mI~fnnlcL~yVgVaFYyv 133 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV-VFI-----LMISFNNLCLKYVGVAFYYV 133 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh-eee-----eehhccceehhhcceEEEEe
Confidence 57888999999887776666554321110 0 1111000 000 122 121 22234567789999988888
Q ss_pred chhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHH
Q 026311 176 FSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYY 213 (240)
Q Consensus 176 ~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l 213 (240)
--.+.-+|.+++.+++++++=+..-..++.+|+.|..+
T Consensus 134 gRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 134 GRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 88999999999999999999999999999999999755
No 139
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=36.43 E-value=36 Score=23.96 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 026311 199 GSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~ 216 (240)
..++|..+.+.|..+...
T Consensus 5 ~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 5 LFLVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446777777777665543
No 140
>PRK15049 L-asparagine permease; Provisional
Probab=36.09 E-value=3.7e+02 Score=25.14 Aligned_cols=18 Identities=6% Similarity=0.259 Sum_probs=8.5
Q ss_pred ceeeeechhHHHHHHHHHH
Q 026311 170 PVFVSMFSPIATVISVILS 188 (240)
Q Consensus 170 ~~~~s~~~~l~Pv~a~l~~ 188 (240)
|-+... ....|.+++++.
T Consensus 416 pf~~~~-~p~~~~~~l~~~ 433 (499)
T PRK15049 416 SFKLPG-APFTSWLTLLFL 433 (499)
T ss_pred CCcccC-ccHHHHHHHHHH
Confidence 344433 455565554433
No 141
>PRK10054 putative transporter; Provisional
Probab=36.01 E-value=3.1e+02 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026311 75 IIGCVYLLAAVFVLSSTVVLQAATLGDFP 103 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~ 103 (240)
..|....+. .+...+......++.+|+.
T Consensus 44 ~~g~~~s~~-~~~~~~~~~~~G~l~Dr~g 71 (395)
T PRK10054 44 LIGYAMTIA-LTIGVVFSLGFGILADKFD 71 (395)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhcC
Confidence 345554432 3344444555556655553
No 142
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=34.85 E-value=34 Score=20.34 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCccchhhHHHHHHHHHHH
Q 026311 181 TVISVILSAITLGDSIDIGSLSGMFLMFAGLY 212 (240)
Q Consensus 181 Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~ 212 (240)
|+.+.+.|.+.+=-+=-...++|.-+|+.|+.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766666677888888888875
No 143
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=33.35 E-value=1.5e+02 Score=21.37 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHHhhc
Q 026311 201 LSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 201 iiG~~lIl~Gv~l~~~~ 217 (240)
++|.++++=..+.+.|+
T Consensus 50 f~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 50 FVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444544433344454
No 144
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=33.34 E-value=1.4e+02 Score=19.78 Aligned_cols=40 Identities=8% Similarity=-0.057 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHhCCC-c--------cchhhHHHHHHHHHHHHHhh
Q 026311 177 SPIATVISVILSAITLGDS-I--------DIGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 177 ~~l~Pv~a~l~~~l~lgE~-~--------~~~~iiG~~lIl~Gv~l~~~ 216 (240)
..+.|+.+++....+++.. + .++|+.-..+..+...++.+
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv~lts~~~~~~y~ 51 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWVVLTSVCMAIVYR 51 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765555432 2 23555555544444444433
No 145
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=33.29 E-value=3.4e+02 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=12.1
Q ss_pred CCccch--hhHHHHHHHHHHHHH
Q 026311 194 DSIDIG--SLSGMFLMFAGLYYV 214 (240)
Q Consensus 194 E~~~~~--~iiG~~lIl~Gv~l~ 214 (240)
|..++. ..+++++.+.++.++
T Consensus 364 ~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 364 EAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHhChHHHHHHHHHHHHHHHHHH
Confidence 444544 466666666676655
No 146
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=32.79 E-value=3.7e+02 Score=24.17 Aligned_cols=178 Identities=10% Similarity=0.073 Sum_probs=95.4
Q ss_pred CcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHH---Hhhc---cCC-c
Q 026311 32 SKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQA---ATLG---DFP-A 104 (240)
Q Consensus 32 ~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~---~~~~---~~~-~ 104 (240)
.+.-++|++++++|+.+... .|.. ++++.+....+.+...|.+..+.|.+.=|++++-.. ...+ +.. +
T Consensus 134 g~~vL~Gv~v~LiGIai~g~-AG~~----Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~ 208 (344)
T PF06379_consen 134 GQIVLLGVAVCLIGIAICGK-AGSM----KEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVN 208 (344)
T ss_pred chhhhhHHHHHHHHHHHHhH-HHHh----hhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCC
Confidence 45678899999999988742 2211 011111112234566899999999877777765422 1110 000 1
Q ss_pred hhH----HHHHHHHHHHHHHHHHHHhhc---CCCc--ccccccCchhHHHHHHHHHH-HH--HHHHHHHHHHHhhcCce-
Q 026311 105 PMS----LCAITSLIGVFVTTVVELLQN---HKLD--FGWEFVGLPETMSYIALGGM-IN--GVCQSFNAWAIKKRGPV- 171 (240)
Q Consensus 105 ~~~----~~~~~~l~g~l~l~~~~~~~~---~~~~--~~~~~~~~~~~~~i~l~~gi-~t--~ia~~l~~~al~~~g~~- 171 (240)
++. .....+.-|.+.-+.+++... +..+ -+.....+...-.. ++..+ ++ -..|..|.++-.+.|+.
T Consensus 209 ~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~-~~~aLaG~lWy~qfffYg~G~s~lg~~~ 287 (344)
T PF06379_consen 209 PLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNY-LFCALAGVLWYSQFFFYGMGESKLGASG 287 (344)
T ss_pred cHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 221 222233345555667766532 1111 01111111111222 34444 32 25667788888888854
Q ss_pred ---eeeechhHHHHHHHHHHHHHhCCCcc------chhhHHHHHHHHHHHHHhh
Q 026311 172 ---FVSMFSPIATVISVILSAITLGDSID------IGSLSGMFLMFAGLYYVLW 216 (240)
Q Consensus 172 ---~~s~~~~l~Pv~a~l~~~l~lgE~~~------~~~iiG~~lIl~Gv~l~~~ 216 (240)
.=.+.+.+.-+++-+.|. .++|--. -..++|.++++.++.++-.
T Consensus 288 ~~~sW~i~ma~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 288 PFSSWAIHMALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 233556677788888886 4777322 3457888888888777644
No 147
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=32.11 E-value=2.7e+02 Score=24.10 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=28.4
Q ss_pred chhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHH
Q 026311 34 VKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSS 90 (240)
Q Consensus 34 ~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 90 (240)
..+.|+.++..|+..+. .+-+.. .+.....|+.+..++.+.|.+
T Consensus 5 ~~~f~~~mGtg~l~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 5 PAWFGMVMGTGGLSNLL-YLLPYH------------FGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGGGHHHHHHHHHHHHH-HTTTTT------------STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHh------------ccchhHHHHHHHHHHHHHHHH
Confidence 35789999999998764 322110 122345777777777777776
No 148
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=32.02 E-value=1.1e+02 Score=24.94 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSST 91 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~ 91 (240)
..|..+-+...=|--+.
T Consensus 101 ~LGiflpLI~tNCaVLG 117 (190)
T TIGR01943 101 ALGIFLPLITTNCAVLG 117 (190)
T ss_pred HHhhhhhHHHHHHHHHH
Confidence 35665555554443333
No 149
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.39 E-value=45 Score=23.47 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCccchhhHHHHHHHHHHHHHhhcccccc
Q 026311 194 DSIDIGSLSGMFLMFAGLYYVLWAKGKEN 222 (240)
Q Consensus 194 E~~~~~~iiG~~lIl~Gv~l~~~~~~~~~ 222 (240)
-..++..++|.+++++|+.+...+..|.+
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 35678899999999999888766544433
No 150
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=29.28 E-value=81 Score=25.88 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.1
Q ss_pred HhCCCccchhhHHHHHH-HHHHHHH
Q 026311 191 TLGDSIDIGSLSGMFLM-FAGLYYV 214 (240)
Q Consensus 191 ~lgE~~~~~~iiG~~lI-l~Gv~l~ 214 (240)
++|=+++-.++.|+.+. +.|+=+.
T Consensus 67 ~fgIsl~afrIaGGiiL~~ia~~ml 91 (201)
T TIGR00427 67 LFGISIDAFRIAGGILLFTIAMDML 91 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777654 3555443
No 151
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.18 E-value=2.2e+02 Score=20.45 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHH
Q 026311 148 ALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAI 190 (240)
Q Consensus 148 l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l 190 (240)
.|..+.+.+.+.+ ..++++.+-..--..-.+.-+.++++|.+
T Consensus 9 ~y~t~~~ii~~~l-Vq~IkkT~~v~~K~iPlIs~viGilLG~~ 50 (93)
T PF06946_consen 9 TYMTFLSIITPAL-VQAIKKTKVVPNKWIPLISVVIGILLGAA 50 (93)
T ss_pred HHHHHHHHHHHHH-HHHHHHhccCCcchhhHHHHHHHHHHHHH
Confidence 3544444455543 56777765322222222333444555443
No 152
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.98 E-value=51 Score=20.80 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHhhccc
Q 026311 199 GSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
..+.++++.++|++++.-+|-
T Consensus 18 GLi~A~vlfi~Gi~iils~kc 38 (50)
T PF02038_consen 18 GLIFAGVLFILGILIILSGKC 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHCTTHH
T ss_pred chHHHHHHHHHHHHHHHcCcc
Confidence 346677778888877765543
No 153
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=28.88 E-value=1.3e+02 Score=24.59 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLS 89 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a 89 (240)
..|..+-+...=|--
T Consensus 102 ~LGiflpLI~tNCaV 116 (193)
T PRK05151 102 LLGIFLPLITTNCAV 116 (193)
T ss_pred HHhhhhhHHHHHHHH
Confidence 356655555544433
No 154
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=28.65 E-value=4.1e+02 Score=23.46 Aligned_cols=28 Identities=0% Similarity=-0.122 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026311 75 IIGCVYLLAAVFVLSSTVVLQAATLGDFP 103 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~~vl~~~~~~~~~ 103 (240)
..|... ....+++.+......++.+|+.
T Consensus 49 ~~g~~~-~~~~~~~~i~~~~~g~l~dr~g 76 (402)
T TIGR00897 49 QSASAF-TLYGIAAAISAWISGVVAEIIG 76 (402)
T ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHcC
Confidence 345443 3455666777777777777764
No 155
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=27.32 E-value=1.3e+02 Score=17.61 Aligned_cols=19 Identities=0% Similarity=-0.251 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026311 77 GCVYLLAAVFVLSSTVVLQ 95 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl~ 95 (240)
=.+.-++.|.+|++|++..
T Consensus 7 iVl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 7 IVLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3556678899999999874
No 156
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.22 E-value=26 Score=22.92 Aligned_cols=17 Identities=41% Similarity=0.512 Sum_probs=14.2
Q ss_pred hhhhHHHhhhhhhhhhh
Q 026311 35 KILGTLLCVVGAVTMGL 51 (240)
Q Consensus 35 ~~~Gi~l~~~Gv~~l~~ 51 (240)
|++|+++-+.|++++.+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 46899999999988865
No 157
>TIGR00304 conserved hypothetical protein TIGR00304. The member of this family from Pyrococcus horikoshii scores only 13.91 bits, largely because it is at least 15 residues shorter than other members of this family of small proteins and is penalized for not matching to the N-terminal section of the model. Cutoff scores are set so this hit is between noise and trusted cutoffs.
Probab=26.79 E-value=62 Score=22.37 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHhhc
Q 026311 201 LSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 201 iiG~~lIl~Gv~l~~~~ 217 (240)
..|..+++.|+.++..+
T Consensus 8 ~~Gi~LIfiGfilv~lG 24 (77)
T TIGR00304 8 PLGIILIVIGFLLTFLG 24 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666655443
No 158
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.33 E-value=54 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.778 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhccc
Q 026311 203 GMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 203 G~~lIl~Gv~l~~~~~~ 219 (240)
|.++++.++++..|.++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44555566666544443
No 159
>COG2034 Predicted membrane protein [Function unknown]
Probab=26.29 E-value=88 Score=22.05 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHhhccccccc
Q 026311 199 GSLSGMFLMFAGLYYVLWAKGKENY 223 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~~~~~~ 223 (240)
...+|..+++.|+.+..+.+.++++
T Consensus 14 li~iGf~LifLGi~l~~~~~~~~~~ 38 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFAESG 38 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC
Confidence 4578888899998887776555444
No 160
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=26.11 E-value=66 Score=28.21 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=28.0
Q ss_pred cCCcchhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHH
Q 026311 30 LYSKVKILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSST 91 (240)
Q Consensus 30 ~~~~~~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~ 91 (240)
|+...-.+|.+--+-|+.++...+++ .....|.+++=++.+||++.
T Consensus 225 W~~lVl~mGsi~~l~Gl~vl~~~~~~----------------~~~~~G~ilIGLGlvCySIs 270 (347)
T PF10951_consen 225 WPKLVLVMGSISILWGLYVLLASSGP----------------ANNAPGYILIGLGLVCYSIS 270 (347)
T ss_pred hHHHHHHHhhHHHHhhhheEEecCCc----------------ccCCcceeeeehhhHHHHHH
Confidence 44444455666666677666432221 22346778888888999886
No 161
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=25.79 E-value=1.7e+02 Score=25.75 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=33.0
Q ss_pred HhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCC
Q 026311 165 IKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESE 231 (240)
Q Consensus 165 l~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~ 231 (240)
-.|..|.+.+... |=.++|..|.--+.-+..+.|..+++.++.-.. ++-|..+.++.|+||
T Consensus 21 ~Dk~np~R~gt~l-----FW~llg~~F~~G~~lp~~~~G~lvl~m~~la~~-~~v~~g~~~~~s~e~ 81 (308)
T PF06166_consen 21 RDKTNPKRIGTAL-----FWGLLGLIFIFGDYLPPFVVGILVLVMALLAGF-GQVGIGSYKEPSEEE 81 (308)
T ss_pred cCCCCCcccchHH-----HHHHHHHHHHcCccchhHHHHHHHHHHHHHHHc-CCCCCCCCCCCCHHH
Confidence 3455565554332 444555555444455667899998888876543 333333333334433
No 162
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=25.74 E-value=92 Score=18.68 Aligned_cols=18 Identities=6% Similarity=-0.274 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026311 77 GCVYLLAAVFVLSSTVVL 94 (240)
Q Consensus 77 G~~l~l~aa~~~a~~~vl 94 (240)
=.+.-++.|.+|++|++.
T Consensus 7 iVl~Pil~A~~Wa~fNIg 24 (40)
T PRK13240 7 IVLAPILAAAGWAVFNIG 24 (40)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345667889999999986
No 163
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=25.63 E-value=4.7e+02 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccccccccCC
Q 026311 181 TVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGS 228 (240)
Q Consensus 181 Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~ 228 (240)
|+...+.+.+..-.-.....+.+..+++...+...|+.+++++.+-||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK11195 344 LLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQFDS 391 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 444445554433333344556666666666666667666555555554
No 164
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=25.56 E-value=1.7e+02 Score=24.09 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSS 90 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~ 90 (240)
..|..+-+...=|--+
T Consensus 109 ~LGiflpLI~tNCaVL 124 (199)
T PRK12456 109 TLGAFLPLLTIHCAIF 124 (199)
T ss_pred HHhhhHhHHHHHHHHH
Confidence 4566665555444333
No 165
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=25.09 E-value=71 Score=28.22 Aligned_cols=131 Identities=13% Similarity=0.027 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-HhhcC-------CCcccccccCchhHHHHH--HHHH
Q 026311 82 LAAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVE-LLQNH-------KLDFGWEFVGLPETMSYI--ALGG 151 (240)
Q Consensus 82 l~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~-~~~~~-------~~~~~~~~~~~~~~~~i~--l~~g 151 (240)
+++.+||+-+-..+|-..|+.. ..+.+.|=+.++-++...+. +..+. .++ -++...+..+-++. +.-|
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~-Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPN-FLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCcc-HHHHHhcCChHHHHHHHHhh
Confidence 4678899999888877655432 12245555555544443332 22221 111 01100111122210 1222
Q ss_pred HHHHHHHHHHHHHHhhcCceeeeech-hHHHHHHHHHHHHHhCCCcc--chhhHHHHHHHHHHHHHh
Q 026311 152 MINGVCQSFNAWAIKKRGPVFVSMFS-PIATVISVILSAITLGDSID--IGSLSGMFLMFAGLYYVL 215 (240)
Q Consensus 152 i~t~ia~~l~~~al~~~g~~~~s~~~-~l~Pv~a~l~~~l~lgE~~~--~~~iiG~~lIl~Gv~l~~ 215 (240)
+.--++-.+-.+++...|-+.+-... .+.-+.++++-|+ ++.+.+ .....|.+++++.+.+-.
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 22334555656666766665443322 2233345555553 455554 356678888888777643
No 166
>PF15471 TMEM171: Transmembrane protein family 171
Probab=24.96 E-value=90 Score=27.02 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 026311 198 IGSLSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 198 ~~~iiG~~lIl~Gv~l~~~~ 217 (240)
..|+.|-+++++|+-.....
T Consensus 161 slQImGPlIVl~GLCFFVVA 180 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVA 180 (319)
T ss_pred ehhhhhhHHHHHhhhhhhee
Confidence 36899999999997665544
No 167
>PRK10655 potE putrescine transporter; Provisional
Probab=24.46 E-value=3e+02 Score=24.94 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHH-hhccccccccc
Q 026311 179 IATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYV-LWAKGKENYSN 225 (240)
Q Consensus 179 l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~-~~~~~~~~~~~ 225 (240)
..|+.+.+......-.........|..+++.|+.+. .+++|+++|+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 556666665544332222233466788888886665 34444444443
No 168
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=24.40 E-value=1.8e+02 Score=24.74 Aligned_cols=32 Identities=25% Similarity=0.070 Sum_probs=14.0
Q ss_pred HHHHHHHHHHH-hhhcccccccCCcchhhhHHH
Q 026311 10 PGLIFIIAWTF-RLEKVKLSCLYSKVKILGTLL 41 (240)
Q Consensus 10 Pi~t~i~a~~~-~~E~l~~~~~~~~~~~~Gi~l 41 (240)
|+++.+++.+. .-|-+-.|..|...+-+|+.+
T Consensus 94 ivfIlvIA~~Vq~vem~L~a~~p~Ly~aLGifL 126 (244)
T PRK01061 94 IIFIVVIAAFTQILELLLEKVSRNLYLSLGIFL 126 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence 45555555443 234333333344444444444
No 169
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=23.91 E-value=5.2e+02 Score=22.97 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 149 LGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 149 ~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
+.++...+.-.+.+-++|+.+=-...+-..---+-.++++.++.+.+.++...+=+.+|-.|+-+....++.+
T Consensus 88 ~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 88 LISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4444444555677788888753322333333333457899999999999999999999999998887765544
No 170
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=23.55 E-value=54 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 176 FSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 176 ~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
+....|+..++.++...+|+.+..+++..+++..|+....+.+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence 3445678888889989999999999999999999987755543
No 171
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=23.41 E-value=4.5e+02 Score=22.05 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhccCC
Q 026311 86 FVLSSTVVLQAATLGDFP 103 (240)
Q Consensus 86 ~~~a~~~vl~~~~~~~~~ 103 (240)
+...+......++.+|+.
T Consensus 43 ~~~~~~~~~~g~l~dr~g 60 (352)
T PF07690_consen 43 LGSALFSPFAGYLSDRFG 60 (352)
T ss_dssp HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 344444555555555553
No 172
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=23.40 E-value=2.7e+02 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026311 73 EKIIGCVYLLAAVFVLSSTVVLQAATLGD 101 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~~vl~~~~~~~ 101 (240)
+.....+..+.+|..|.-|...+||.++.
T Consensus 118 ~~i~~l~~~li~a~IwipYf~~S~RVK~T 146 (149)
T PF10754_consen 118 EAIRELLRSLIAAAIWIPYFLRSKRVKNT 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 34567888899999999999998886543
No 173
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=22.81 E-value=4.7e+02 Score=24.42 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHhh
Q 026311 201 LSGMFLMFAGLYYVLW 216 (240)
Q Consensus 201 iiG~~lIl~Gv~l~~~ 216 (240)
..|.++-+...+++.+
T Consensus 456 ~~~~~~~~~~~v~~sl 471 (502)
T PRK15419 456 IPGFIFGSIGIVVFSL 471 (502)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 174
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=22.52 E-value=2.8e+02 Score=22.89 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFV 87 (240)
Q Consensus 75 ~~G~~l~l~aa~~ 87 (240)
..|..+-+...=|
T Consensus 111 ~LGiflpLI~tNC 123 (200)
T TIGR01940 111 ALGIFLPLITVNC 123 (200)
T ss_pred HHhhhHhHHHHHH
Confidence 3455555544444
No 175
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=22.42 E-value=2.2e+02 Score=23.50 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026311 75 IIGCVYLLAAVFVLSST 91 (240)
Q Consensus 75 ~~G~~l~l~aa~~~a~~ 91 (240)
..|..+-+...=|--+.
T Consensus 112 ~LGiflpLI~~NCaVLG 128 (202)
T PRK02830 112 ALGIFLPLITVNCAIFG 128 (202)
T ss_pred HHhhhhhHHHHHHHHHH
Confidence 35666555554443333
No 176
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=22.12 E-value=5.5e+02 Score=22.63 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Q 026311 83 AAVFVLSSTVVLQAATLGDFPAPMSLCAITSLIGVFVTTVVE 124 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~~~~~~~~~~~~~l~g~l~l~~~~ 124 (240)
...+.+++......++.+|+. +-..........++..+..+
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G-~r~~l~~~~~l~~~~~~~~~ 92 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVS-ERRSVAISLLLIAVGALMRE 92 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666664 33333444444434433333
No 177
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=21.79 E-value=2e+02 Score=23.67 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=20.6
Q ss_pred CCCccchhhHHHHHHHHHHHHHhhccccccccccCCCCCcccCCCCC
Q 026311 193 GDSIDIGSLSGMFLMFAGLYYVLWAKGKENYSNIGSESESDAENPLL 239 (240)
Q Consensus 193 gE~~~~~~iiG~~lIl~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
+...++.....+.++..-.......-++-...++|...|.+|++|+.
T Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~ 63 (257)
T PF01040_consen 17 GGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLP 63 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchh
Confidence 44455544555444443222222222233334444444466666653
No 178
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=21.33 E-value=3.2e+02 Score=21.71 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=41.1
Q ss_pred hhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC--chhHHHHHHH
Q 026311 36 ILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLGDFP--APMSLCAITS 113 (240)
Q Consensus 36 ~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~~~~--~~~~~~~~~~ 113 (240)
-++++.++.|.=++...+--+ +......|..|..+++.+.+.-+.+..----+.+++. -.+++++|.=
T Consensus 92 slAVV~AIFGLElLmvSQvcE----------d~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCe 161 (184)
T PF15108_consen 92 SLAVVVAIFGLELLMVSQVCE----------DAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCE 161 (184)
T ss_pred HHHHHHHHHhHHHHHHHHHHh----------cchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHH
Confidence 367788888887665433111 0112346788999888876654443322222223221 2467777766
Q ss_pred HHHHHHH
Q 026311 114 LIGVFVT 120 (240)
Q Consensus 114 l~g~l~l 120 (240)
+.++.++
T Consensus 162 FtAsFLf 168 (184)
T PF15108_consen 162 FTASFLF 168 (184)
T ss_pred HHHHHHH
Confidence 6665443
No 179
>PF07843 DUF1634: Protein of unknown function (DUF1634); InterPro: IPR012861 This family contains many hypothetical bacterial and archaeal proteins. A few members of this family are annotated as being putative transmembrane proteins, and the region in question in fact contains many hydrophobic residues.
Probab=21.18 E-value=83 Score=22.98 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=18.6
Q ss_pred ccchhhHHHHHHHHHHHHHhhcccc
Q 026311 196 IDIGSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 196 ~~~~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
+....++++++++.|..+...+...
T Consensus 5 LR~GV~~s~~~i~~G~il~l~~~~~ 29 (105)
T PF07843_consen 5 LRIGVLLSAALIIIGLILYLFRHGS 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456678899999998887765554
No 180
>PRK10591 hypothetical protein; Provisional
Probab=21.06 E-value=3.2e+02 Score=19.55 Aligned_cols=17 Identities=24% Similarity=0.731 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHhhc
Q 026311 201 LSGMFLMFAGLYYVLWA 217 (240)
Q Consensus 201 iiG~~lIl~Gv~l~~~~ 217 (240)
++|..+++=....+.|+
T Consensus 50 f~Gi~lmiPAav~ivWR 66 (92)
T PRK10591 50 FLGVLLMLPAAVVIIWR 66 (92)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 34444444443444554
No 181
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.03 E-value=1.5e+02 Score=19.97 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 026311 201 LSGMFLMFAG 210 (240)
Q Consensus 201 iiG~~lIl~G 210 (240)
++|+.+++..
T Consensus 9 i~Gm~iVF~~ 18 (79)
T PF04277_consen 9 IIGMGIVFLV 18 (79)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 182
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.02 E-value=56 Score=20.02 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=6.9
Q ss_pred cchhhHHHHHHHHHH
Q 026311 197 DIGSLSGMFLMFAGL 211 (240)
Q Consensus 197 ~~~~iiG~~lIl~Gv 211 (240)
+|...+=.++|+.|+
T Consensus 3 ~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 3 TWLTTIFSVVIILGI 17 (49)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444455554
No 183
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.92 E-value=2.4e+02 Score=17.99 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=27.2
Q ss_pred hhhhHHHhhhhhhhhhhcccCCCCCCCcCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026311 35 KILGTLLCVVGAVTMGLMHSTAPAQETSVNTPNIIFDREKIIGCVYLLAAVFVLSSTVVLQAATLG 100 (240)
Q Consensus 35 ~~~Gi~l~~~Gv~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~vl~~~~~~ 100 (240)
..+|.++.+.|++++.. .|| |.+.++++-..+|-..--.||+.+
T Consensus 5 ~v~G~~lv~~Gii~~~l-PGp---------------------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPL-PGP---------------------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcC-CCC---------------------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46899999999988753 232 445555555555555555555543
No 184
>COG2056 Predicted permease [General function prediction only]
Probab=20.77 E-value=79 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=11.2
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 026311 73 EKIIGCVYLLAAVFVLSST 91 (240)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~~ 91 (240)
+.....-+.++++++.++.
T Consensus 54 ~a~vALSYalLGafAvaIs 72 (444)
T COG2056 54 NANVALSYALLGAFAVAIS 72 (444)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3344555666777776654
No 185
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=20.04 E-value=4.7e+02 Score=21.04 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=44.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCceeeeechhHHHHHHHHHHHH--HhC-----CCccchhh--HHH
Q 026311 134 GWEFVGLPETMSYIALGGMINGVCQSFNAWAIKKRGPVFVSMFSPIATVISVILSAI--TLG-----DSIDIGSL--SGM 204 (240)
Q Consensus 134 ~~~~~~~~~~~~i~l~~gi~t~ia~~l~~~al~~~g~~~~s~~~~l~Pv~a~l~~~l--~lg-----E~~~~~~i--iG~ 204 (240)
+|..++.....++ +..++.|.++-.+|...+||...--.++..-+. .+++++-.+ ++. -++++..+ -.|
T Consensus 62 ~wk~t~~G~~igi-~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~-~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~C 139 (173)
T PF11085_consen 62 DWKNTWLGNLIGI-VFIGVFSIVAALLYYALLKKFKGPWPGILYGLA-WWAIVFFVLNPIFPMIKPVTELDWNTIITTLC 139 (173)
T ss_pred chhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHhcccccCChhhhhCchhHHHHHHH
Confidence 4544433445565 556666777778899999998876666655432 233332221 011 12233333 356
Q ss_pred HHHHHHHHHH
Q 026311 205 FLMFAGLYYV 214 (240)
Q Consensus 205 ~lIl~Gv~l~ 214 (240)
..++-|+++-
T Consensus 140 iyiLyGlFIG 149 (173)
T PF11085_consen 140 IYILYGLFIG 149 (173)
T ss_pred HHHHHHHHhc
Confidence 6778888774
Done!