Query 026311
Match_columns 240
No_of_seqs 165 out of 1091
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 4.7E-12 1.6E-16 97.0 6.0 67 153-219 39-106 (137)
2 3b5d_A Multidrug transporter E 98.8 7.3E-09 2.5E-13 76.3 7.4 66 153-218 39-105 (110)
3 2i68_A Protein EMRE; transmemb 95.7 0.0032 1.1E-07 47.7 1.5 40 6-51 64-103 (137)
4 3b5d_A Multidrug transporter E 95.6 0.0051 1.7E-07 44.7 2.2 40 6-51 64-103 (110)
5 3l1l_A Arginine/agmatine antip 67.7 11 0.00039 32.6 6.7 46 176-221 386-431 (445)
6 2zxe_G FXYD10, phospholemman-l 64.4 4.9 0.00017 26.4 2.6 22 199-220 23-44 (74)
7 1pw4_A Glycerol-3-phosphate tr 63.3 67 0.0023 27.0 11.3 12 160-171 367-378 (451)
8 4aps_A DI-OR tripeptide H+ sym 55.5 97 0.0033 26.6 10.6 15 160-174 407-421 (491)
9 2knc_A Integrin alpha-IIB; tra 50.3 21 0.00073 22.0 3.7 15 202-216 20-34 (54)
10 2jp3_A FXYD domain-containing 42.6 19 0.00065 23.2 2.7 21 199-219 21-41 (67)
11 2l2t_A Receptor tyrosine-prote 40.9 27 0.00092 20.5 3.0 8 215-222 33-40 (44)
12 2jo1_A Phospholemman; FXYD1, N 39.5 22 0.00076 23.1 2.6 20 199-218 20-39 (72)
13 2ks1_B Epidermal growth factor 37.0 33 0.0011 20.2 2.9 7 215-221 34-40 (44)
14 4sgb_I Potato inhibitor, PCI-1 34.8 11 0.00039 22.6 0.6 10 228-237 24-33 (51)
15 3o7q_A L-fucose-proton symport 31.3 2.3E+02 0.0077 23.5 12.5 27 76-103 63-89 (438)
16 2l8s_A Integrin alpha-1; trans 29.0 58 0.002 20.0 3.2 15 202-216 17-31 (54)
17 4aps_A DI-OR tripeptide H+ sym 28.1 2.8E+02 0.0095 23.6 14.2 21 83-103 62-83 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.27 E-value=4.7e-12 Score=97.04 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
+++++|++|++++|+.+++.+..+ .++.|++++++|++++||++++.+++|.++|++|++++++.++
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 788999999999999999999888 8999999999999999999999999999999999999887543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.84 E-value=7.3e-09 Score=76.32 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhcCceeeeec-hhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhcc
Q 026311 153 INGVCQSFNAWAIKKRGPVFVSMF-SPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 153 ~t~ia~~l~~~al~~~g~~~~s~~-~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~ 218 (240)
+.+++|++|.+++|+.+.+.+... ..+.|+.+.+.|++++||++++.+++|.++|+.|++..+..+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 778999999999999999999887 799999999999999999999999999999999999987643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.72 E-value=0.0032 Score=47.70 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311 6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL 51 (240)
Q Consensus 6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~ 51 (240)
.++.|++++++++++++|+++++ +++|+.+.+.|++++..
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 57889999999999999999876 68999999999998864
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.60 E-value=0.0051 Score=44.65 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHHhhhcccccccCCcchhhhHHHhhhhhhhhhh
Q 026311 6 PNLAPGLIFIIAWTFRLEKVKLSCLYSKVKILGTLLCVVGAVTMGL 51 (240)
Q Consensus 6 ~~~~Pi~t~i~a~~~~~E~l~~~~~~~~~~~~Gi~l~~~Gv~~l~~ 51 (240)
..+.|+++.++++++++|+++++ |++|+.+-+.|++++..
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 57889999999999999999875 68999999999988753
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=67.71 E-value=11 Score=32.60 Aligned_cols=46 Identities=7% Similarity=-0.106 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHhhccccc
Q 026311 176 FSPIATVISVILSAITLGDSIDIGSLSGMFLMFAGLYYVLWAKGKE 221 (240)
Q Consensus 176 ~~~l~Pv~a~l~~~l~lgE~~~~~~iiG~~lIl~Gv~l~~~~~~~~ 221 (240)
.....|+.+.+...+.+-..-....+.|..+++.|+.+..+.++|+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4456666666655544322222345667778888876665544433
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=64.43 E-value=4.9 Score=26.43 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHhhcccc
Q 026311 199 GSLSGMFLMFAGLYYVLWAKGK 220 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~~~ 220 (240)
..+.++++.++|++++..+|-|
T Consensus 23 GLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC--
T ss_pred cchhHHHHHHHHHHHHHcCccc
Confidence 3467778888999888877644
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=63.33 E-value=67 Score=27.05 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=7.3
Q ss_pred HHHHHHhhcCce
Q 026311 160 FNAWAIKKRGPV 171 (240)
Q Consensus 160 l~~~al~~~g~~ 171 (240)
.+....+..++.
T Consensus 367 ~~~~~~~~~~~~ 378 (451)
T 1pw4_A 367 IGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHTSCTT
T ss_pred HHHHHHHHhchh
Confidence 455666766665
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=55.53 E-value=97 Score=26.56 Aligned_cols=15 Identities=20% Similarity=-0.093 Sum_probs=8.2
Q ss_pred HHHHHHhhcCceeee
Q 026311 160 FNAWAIKKRGPVFVS 174 (240)
Q Consensus 160 l~~~al~~~g~~~~s 174 (240)
.+....+..++...+
T Consensus 407 ~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 407 GLSVTTKLAPKAFNS 421 (491)
T ss_dssp HHHHHHHHTTTTCSS
T ss_pred HHHHHHHhCCHHHHH
Confidence 455666666655433
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.34 E-value=21 Score=21.98 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 026311 202 SGMFLMFAGLYYVLW 216 (240)
Q Consensus 202 iG~~lIl~Gv~l~~~ 216 (240)
+|+.+++.-+....|
T Consensus 20 l~GLllL~li~~~Lw 34 (54)
T 2knc_A 20 LGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555554444555
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=42.58 E-value=19 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.410 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHhhccc
Q 026311 199 GSLSGMFLMFAGLYYVLWAKG 219 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~~ 219 (240)
..+.++++.++|++++..+|-
T Consensus 21 GLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 21 GLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTHH
T ss_pred chhhHHHHHHHHHHHHHcCcc
Confidence 346677888889888877653
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.95 E-value=27 Score=20.55 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.1
Q ss_pred hhcccccc
Q 026311 215 LWAKGKEN 222 (240)
Q Consensus 215 ~~~~~~~~ 222 (240)
.++++|++
T Consensus 33 ~~RRRr~~ 40 (44)
T 2l2t_A 33 YVRRKSIK 40 (44)
T ss_dssp HHHTTCSS
T ss_pred Hhhhhhhh
Confidence 34444333
No 12
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=39.50 E-value=22 Score=23.09 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHhhcc
Q 026311 199 GSLSGMFLMFAGLYYVLWAK 218 (240)
Q Consensus 199 ~~iiG~~lIl~Gv~l~~~~~ 218 (240)
..+.++++.++|++++..+|
T Consensus 20 GLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 20 GLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCc
Confidence 34667778888888877654
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.97 E-value=33 Score=20.17 Aligned_cols=7 Identities=0% Similarity=0.003 Sum_probs=2.7
Q ss_pred hhccccc
Q 026311 215 LWAKGKE 221 (240)
Q Consensus 215 ~~~~~~~ 221 (240)
.++++++
T Consensus 34 ~~RRr~~ 40 (44)
T 2ks1_B 34 FMRRRHI 40 (44)
T ss_dssp HHHTTTC
T ss_pred HhhhhHh
Confidence 3444433
No 14
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=34.81 E-value=11 Score=22.61 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=7.8
Q ss_pred CCCCcccCCC
Q 026311 228 SESESDAENP 237 (240)
Q Consensus 228 ~~~~~~~~~~ 237 (240)
=|-||||+||
T Consensus 24 CeGesdp~np 33 (51)
T 4sgb_I 24 CEGQSDPKKP 33 (51)
T ss_dssp EECCBCTTSC
T ss_pred eccccCCCCC
Confidence 4678888887
No 15
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=31.31 E-value=2.3e+02 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026311 76 IGCVYLLAAVFVLSSTVVLQAATLGDFP 103 (240)
Q Consensus 76 ~G~~l~l~aa~~~a~~~vl~~~~~~~~~ 103 (240)
.|.+. ....+.+.+......++.+|+.
T Consensus 63 ~g~~~-~~~~~~~~i~~~~~G~l~dr~g 89 (438)
T 3o7q_A 63 AGLIQ-SAFYFGYFIIPIPAGILMKKLS 89 (438)
T ss_dssp HHHHH-HHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHHHH-HHHHHHHHHHHHhHHHHHHHhc
Confidence 44443 3444555555666666666664
No 16
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=29.00 E-value=58 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.478 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 026311 202 SGMFLMFAGLYYVLW 216 (240)
Q Consensus 202 iG~~lIl~Gv~l~~~ 216 (240)
+|+.+++.-+....|
T Consensus 17 l~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 17 FAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 17
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=28.11 E-value=2.8e+02 Score=23.56 Aligned_cols=21 Identities=0% Similarity=-0.157 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhcc-CC
Q 026311 83 AAVFVLSSTVVLQAATLGD-FP 103 (240)
Q Consensus 83 ~aa~~~a~~~vl~~~~~~~-~~ 103 (240)
...+...+......++.++ +.
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~~g 83 (491)
T 4aps_A 62 IYASMVYLSGTIGGFVADRIIG 83 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 3445555556666666666 44
Done!