Query 026312
Match_columns 240
No_of_seqs 58 out of 60
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 10:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3a_A PBF-2, P24: plant trans 100.0 2.5E-73 8.5E-78 501.2 19.4 186 52-239 31-219 (227)
2 3r9z_A WHY2 protein; stwhy2, s 100.0 1E-72 3.4E-77 482.9 17.3 167 50-216 2-170 (178)
3 1aoc_A Coagulogen; coagulation 79.2 0.52 1.8E-05 39.3 0.8 52 60-118 78-129 (175)
4 2quo_A Heat-labIle enterotoxin 47.2 21 0.00073 28.0 4.2 61 107-174 36-100 (126)
5 3pm7_A Uncharacterized protein 27.9 41 0.0014 25.3 2.8 22 184-205 54-75 (80)
6 3am2_A Heat-labIle enterotoxin 24.7 74 0.0025 28.2 4.3 60 108-174 230-293 (328)
7 1vq8_1 50S ribosomal protein L 22.4 26 0.00091 24.8 0.8 14 103-116 42-55 (57)
8 1ylx_A Hypothetical protein AP 17.4 2.2E+02 0.0075 22.2 5.1 40 54-96 39-78 (103)
9 3j21_e 50S ribosomal protein L 14.6 43 0.0015 24.1 0.5 14 103-116 42-55 (62)
10 4g06_A Uncharacterized protein 11.9 1.4E+02 0.0049 22.3 2.6 17 184-200 61-77 (79)
No 1
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=2.5e-73 Score=501.23 Aligned_cols=186 Identities=43% Similarity=0.837 Sum_probs=162.1
Q ss_pred CCCCCCeeeeceeEeecceeEEeeecCCceeeccCCCeEEeeeceEEEEEeecccccccccccceEEEeCchhhhhhhhc
Q 026312 52 KGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTM 131 (240)
Q Consensus 52 ~~~~~~rvf~~ysVYkgKAAlsv~p~~P~F~~~~sg~~~v~R~G~IlLeFAPavG~rqYDW~kKq~FsLS~tEvG~LLsl 131 (240)
++.+++|||++|+||||||||+|+|++|+|+.++||+++|+|+|+|||||||++|+|||||+|||+|+||++|||+||++
T Consensus 31 a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq~FsLS~tEvG~LLsl 110 (227)
T 1l3a_A 31 QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISL 110 (227)
T ss_dssp ----CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHTC
T ss_pred CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEEeeccCccccccccceEEEeCHHHHhHHHhc
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeCccccCCCcCccceeEEEeeCCCC--ceEEEEEeecccCCCceEEEeecHHHHHHHHHHHHhhhhhhccc
Q 026312 132 GPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACSFALPHLMGW 209 (240)
Q Consensus 132 ~~~~s~effHdP~~g~S~~g~v~K~Lkiep~pdG--~f~nLsV~n~~~~~~~~~~vpVt~gEf~virsl~~y~lP~LLGW 209 (240)
+++++|||||||+|++|++|+++|+|+|||+||| +||||+|+|++++++++++||||+|||+|||++|+|+|||||||
T Consensus 111 ~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~de~~~VpVs~gEfaV~rsl~~f~LP~LlGw 190 (227)
T 1l3a_A 111 GTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMPYLLGW 190 (227)
T ss_dssp CTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTEEEEEEEEEEHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCCcceEEEechHHHHHHHHHHHHhhchhhcch
Confidence 9999999999999999999999999999999997 89999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCccccc-ccCcccC
Q 026312 210 DRLTNQLPRSSTDSSSSSKVDQQ-FLNLEWD 239 (240)
Q Consensus 210 ~~~~n~~~~~~~~~~~~~~~~~~-~~~~ew~ 239 (240)
|+++|++ +++++++.++.++. ++|+||+
T Consensus 191 ~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 219 (227)
T 1l3a_A 191 HTAVNSF--KPEDASRSNNANPRSGAELEWN 219 (227)
T ss_dssp HHHHTTC--SCC-------------------
T ss_pred hhccccC--ChhhcccccCCCCCcCCcceec
Confidence 9999999 68888888888885 9999997
No 2
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=1e-72 Score=482.87 Aligned_cols=167 Identities=71% Similarity=1.152 Sum_probs=151.1
Q ss_pred ccCCCCCCeeeeceeEeecceeEEeeecCCceeeccCCCeEEeeeceEEEEEeecccccccccccceEEEeCchhhhhhh
Q 026312 50 SAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLL 129 (240)
Q Consensus 50 ~~~~~~~~rvf~~ysVYkgKAAlsv~p~~P~F~~~~sg~~~v~R~G~IlLeFAPavG~rqYDW~kKq~FsLS~tEvG~LL 129 (240)
+++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||
T Consensus 2 ~~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Ll 81 (178)
T 3r9z_A 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI 81 (178)
T ss_dssp -----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHH
T ss_pred CCCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeeeCccccCCCcCccceeEEEeeCCCC--ceEEEEEeecccCCCceEEEeecHHHHHHHHHHHHhhhhhhc
Q 026312 130 TMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACSFALPHLM 207 (240)
Q Consensus 130 sl~~~~s~effHdP~~g~S~~g~v~K~Lkiep~pdG--~f~nLsV~n~~~~~~~~~~vpVt~gEf~virsl~~y~lP~LL 207 (240)
+++++++|||||||+|++|++|+++|+|+|||+||| +||||||+|++++++++++||||+|||+|||++|+|+|||||
T Consensus 82 sl~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~~~~lP~Ll 161 (178)
T 3r9z_A 82 SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIM 161 (178)
T ss_dssp TCCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHHHHHHHHHT
T ss_pred HhcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred cchhhccCC
Q 026312 208 GWDRLTNQL 216 (240)
Q Consensus 208 GW~~~~n~~ 216 (240)
|||+++|+.
T Consensus 162 Gw~~~~~~~ 170 (178)
T 3r9z_A 162 GWDRFTNRP 170 (178)
T ss_dssp TGGGCCC--
T ss_pred chHHHhCCc
Confidence 999999986
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=79.24 E-value=0.52 Score=39.32 Aligned_cols=52 Identities=27% Similarity=0.492 Sum_probs=43.8
Q ss_pred eeceeEeecceeEEeeecCCceeeccCCCeEEeeeceEEEEEeecccccccccccceEE
Q 026312 60 FAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHF 118 (240)
Q Consensus 60 f~~ysVYkgKAAlsv~p~~P~F~~~~sg~~~v~R~G~IlLeFAPavG~rqYDW~kKq~F 118 (240)
|+||+-|++.+-.+.+..-|.|.---+| +=.|+.| ||.+|-||--|+.|-.|
T Consensus 78 f~pf~hf~secpvstrdcepvfgyt~a~------efrvivq-apragfrqcvwqhkcry 129 (175)
T 1aoc_A 78 FPPFTHFKSECPVSTRDCEPVFGYTVAG------EFRVIVQ-APRAGFRQCVWQHKCRF 129 (175)
T ss_dssp STTCCCCSSBCCEEEECCCCSEEEBTTC------CEEEECC-BTTTTBCBCCCEEEETT
T ss_pred CCCcccccccCCcccccccccccceecc------eEEEEEe-CchhhhHHHHHhhhccc
Confidence 5999999999999999999999655444 4456666 99999999999998764
No 4
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=47.23 E-value=21 Score=28.04 Aligned_cols=61 Identities=16% Similarity=0.378 Sum_probs=43.0
Q ss_pred ccccccccceEEEeCchhhhhhhhcCCCCceeeeeCccccCCCcCccceeEEEee-CCCC---ceEEEEEee
Q 026312 107 ERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKA-NADG---FFISLNVAN 174 (240)
Q Consensus 107 ~rqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHdP~~g~S~~g~v~K~Lkiep-~pdG---~f~nLsV~n 174 (240)
...|-|++|...-|+.+.-|+--.+.+..-+.|-... + +-....|+|. +.|| ||+.||...
T Consensus 36 snsypwtqklnlhltitatgqkyrilaskivdfniys-----n--nfnnlvkleqslgdgvkdhyvdislda 100 (126)
T 2quo_A 36 SNSYPWTQKLNLHLTITATGQKYRILASKIVDFNIYS-----N--NFNNLVKLEQSLGDGVKDHYVDISLDA 100 (126)
T ss_dssp SSCBCTTCCEEEEEEECSSSEEEEEEECTTEEEEEEE-----C--TTSSCEEEEEECCCSSSCEEEEEEECS
T ss_pred cCCCcchheeeeEEEEEecCcEEeeeeeeeeeeEeec-----c--chhHHHHHHHHhcccchhceEEEEecC
Confidence 4679999999999999999988877776665553322 1 2233455665 6777 899888744
No 5
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=27.90 E-value=41 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEeecHHHHHHHHHHHHhhhhh
Q 026312 184 VVPVSTAEFAVMKTACSFALPH 205 (240)
Q Consensus 184 ~vpVt~gEf~virsl~~y~lP~ 205 (240)
.|++|..|+.+|+.+++.+|-+
T Consensus 54 GITLT~eE~~~Lk~~L~~~~~~ 75 (80)
T 3pm7_A 54 GITLTNEEFAELSKTIKSMLEH 75 (80)
T ss_dssp EEEECHHHHHHHHHHHHHTCC-
T ss_pred cceeCHHHHHHHHHHHHHHHHh
Confidence 5999999999999999987754
No 6
>3am2_A Heat-labIle enterotoxin B chain; pore forming toxins; 2.51A {Clostridium perfringens} PDB: 2xh6_A* 2yhj_A
Probab=24.72 E-value=74 Score=28.21 Aligned_cols=60 Identities=17% Similarity=0.383 Sum_probs=42.4
Q ss_pred cccccccceEEEeCchhhhhhhhcCCCCceeeeeCccccCCCcCccceeEEEee-CCCC---ceEEEEEee
Q 026312 108 RKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKA-NADG---FFISLNVAN 174 (240)
Q Consensus 108 rqYDW~kKq~FsLS~tEvG~LLsl~~~~s~effHdP~~g~S~~g~v~K~Lkiep-~pdG---~f~nLsV~n 174 (240)
..|-|++|...-|+.+--|+--.+.+..-+.|-... + +-....|+|. +.|| ||+.++...
T Consensus 230 nsypwtqklnlhltitatgqkyrilaskivdfniys-----n--nfnnlvkleqslgdgvkdhyvdislda 293 (328)
T 3am2_A 230 NSYPWTQKLNLHLTITATGQKYRILASKIVDFNIYS-----N--NFNNLVKLEQSLGDGVKDHYVDISLDA 293 (328)
T ss_dssp SCBCTTCCEEEEEEECSSSEEEEEEECTTEEEEEEE-----C--GGGCCEEEEEECCCSSSCEEEEEEECS
T ss_pred CCCcchhccceEEEEEecCcEEEeeeeeeeeeEeec-----c--chhhHHHHHHhhcccchhceEEEEecC
Confidence 578899999999999999988877776665553322 1 3334456665 6777 898888744
No 7
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=22.37 E-value=26 Score=24.82 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.4
Q ss_pred ecccccccccccce
Q 026312 103 PAIGERKYDWAKKQ 116 (240)
Q Consensus 103 PavG~rqYDW~kKq 116 (240)
|+.--|+|+|+.|-
T Consensus 42 pa~r~R~ynWs~Ka 55 (57)
T 1vq8_1 42 KSAKRRDYEWQSKA 55 (57)
T ss_dssp TCSSCCCCGGGSCT
T ss_pred chhhhcCcchhhhh
Confidence 66677999999873
No 8
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=17.38 E-value=2.2e+02 Score=22.22 Aligned_cols=40 Identities=23% Similarity=0.518 Sum_probs=31.5
Q ss_pred CCCCeeeeceeEeecceeEEeeecCCceeeccCCCeEEeeece
Q 026312 54 SLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGV 96 (240)
Q Consensus 54 ~~~~rvf~~ysVYkgKAAlsv~p~~P~F~~~~sg~~~v~R~G~ 96 (240)
.+.++.|.+|+|=|..-++.+.- | |..-.+|.+.+.|.++
T Consensus 39 Gegn~YY~GYTVkKdd~~~~ih~--P-fikdedG~La~ekqeW 78 (103)
T 1ylx_A 39 GEGNRYYVGYTINKDDEMITIHM--P-FVKNERGELALEKQEW 78 (103)
T ss_dssp CSTTEEEEEEEEEETTEEEEEEE--E-EEECTTSCEEECCSCE
T ss_pred CCCceEEEEEEEccCCeEEEEec--c-ceecCCCceeeeccee
Confidence 57799999999999998887752 3 7777788777777655
No 9
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=14.64 E-value=43 Score=24.09 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=10.7
Q ss_pred ecccccccccccce
Q 026312 103 PAIGERKYDWAKKQ 116 (240)
Q Consensus 103 PavG~rqYDW~kKq 116 (240)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 55566999999873
No 10
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=11.87 E-value=1.4e+02 Score=22.31 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.5
Q ss_pred EEeecHHHHHHHHHHHH
Q 026312 184 VVPVSTAEFAVMKTACS 200 (240)
Q Consensus 184 ~vpVt~gEf~virsl~~ 200 (240)
.|++|..|+.+|+.+++
T Consensus 61 GITLT~eE~~~L~~~L~ 77 (79)
T 4g06_A 61 GITLSNEEFQTMVDAFK 77 (79)
T ss_dssp CEEECHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHc
Confidence 49999999999999886
Done!