BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026313
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 92/124 (74%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R LH + RVGDL R+I FYT+ GMKLLR + PE KYS AF+G+GPE V+ELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 83 GVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIF 142
GV Y++GT +GH A++ ++ + E IR GGNVTRE GP+KGGTT IAFV+DPDGY
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 143 ELIQ 146
ELI+
Sbjct: 122 ELIE 125
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 53/76 (69%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG 213
L MLRVGDL RSI FY K LGMKLLRT + PEYKY+LA +GY E + V+ELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 214 VTEYTKGNAYAQVNTS 229
V +Y G AY + S
Sbjct: 63 VDKYELGTAYGHIALS 78
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81
RR LH + RVGDLDR+IKFYTE GMK+LRK DVPE+KY+ FLG+GPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYI 141
YGVTSY +GH AI EDV +LV ++R P + + +AFV DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDV-----PIDYEDESGFMAFVVDPDGYY 121
Query: 142 FELIQ 146
EL+
Sbjct: 122 IELLN 126
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 50/73 (68%)
Query: 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG 213
+ M+RVGDL RSIKFY + LGMK+LR D PE KYTL LGY E +TVLELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 214 VTEYTKGNAYAQV 226
VT Y AY +
Sbjct: 69 VTSYKHDEAYGHI 81
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----------KYSNAFLGFGPE 70
RR LH V++VG+ +T +FY + GMK+LR + E K+S +GFGPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 71 QSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTH 130
HFV ELTYNYGV Y +G F +A+ + V N R + PL
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASS---QAVSNAR-------KLEWPLTEVAEG 135
Query: 131 IAFVKDPDGYIFELIQRG-PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK 189
+ + P GY F L R P +P+ +V L V DL +S+ ++ LGMK+ ++ +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQR- 194
Query: 190 YTLAMLGYAEEDQTTVLEL 208
A+LGYA D LEL
Sbjct: 195 ---ALLGYA--DNQCKLEL 208
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 158 MLRVGDLGRSIKFYEKALGMKLLR----------TVDKP-EYKYTLAMLGYAEEDQTTVL 206
+ +VG+ ++ +FY LGMK+LR + P + K++ M+G+ ED V
Sbjct: 32 VFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPEDDHFVA 91
Query: 207 ELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236
ELTYNYGV +Y GN + + + S ++SN
Sbjct: 92 ELTYNYGVGDYKLGNDFMGITLASSQAVSN 121
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 17 PKKDKRRFL--HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS-- 72
P + FL + R+ D +++ FYT G+ LL+K D P K+S FL + +
Sbjct: 23 PDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIP 82
Query: 73 -------------HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENI 110
+ELT+N+G SY G GFGH IA DVY +
Sbjct: 83 KDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 111 RAKGGNVTREP--GPLKGGTTHIAFVKDPDGYIFELIQ 146
G ++P G +KG +AF++DPDGY E++
Sbjct: 143 EELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEILN 176
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 120 EPGPLKGG-TTHIAF--VKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P G T AF DPD + + L Q MLR+ D +S+ FY + LG
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTEYTKGN 221
+ LL+ +D P K++L L Y +++ + LELT+N+G TE +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWG-TEDDETQ 113
Query: 222 AYAQVNTSPSG 232
+Y N+ P G
Sbjct: 114 SYHNGNSDPRG 124
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 37 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 96
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 97 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 156
Query: 122 --GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY E++
Sbjct: 157 DDGKMKG----LAFIQDPDGYWIEILN 179
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 27/136 (19%)
Query: 115 GNVTREPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFY 171
G+ EP P GG T ++ D D + + L Q MLRV D +S+ FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 172 EKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE 216
+ LGM L++ D P K++L L Y +++ + LELT+N+G TE
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWG-TE 111
Query: 217 YTKGNAYAQVNTSPSG 232
+ +Y N+ P G
Sbjct: 112 DDETQSYHNGNSDPRG 127
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 33 QTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 122 --GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY E++
Sbjct: 153 DDGKMKG----LAFIQDPDGYWIEILN 175
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 120 EPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P GG T ++ D D + + L Q MLRV D +S+ FY + LG
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTEYTKGN 221
M L++ D P K++L L Y +++ + LELT+N+G TE +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWG-TEDDETQ 112
Query: 222 AYAQVNTSPSG 232
+Y N+ P G
Sbjct: 113 SYHNGNSDPRG 123
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQS------------- 72
+ RV D +++ FYT GM L++K D P K+S FL + +
Sbjct: 33 ETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWAL 92
Query: 73 --HFVVELTYNYG-----VTSYDIGT----GFGHFAIATEDVYKLVENIRAKGGNVTREP 121
+ELT+N+G SY G GFGH IA DVY + G ++P
Sbjct: 93 SRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKP 152
Query: 122 --GPLKGGTTHIAFVKDPDGYIFELIQ 146
G +KG +AF++DPDGY +++
Sbjct: 153 DDGKMKG----LAFIQDPDGYWIQILN 175
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 120 EPGPLKGGTTH---IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALG 176
EP P GG T ++ D D + + L + MLRV D +S+ FY + LG
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 177 MKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTEYTKGN 221
M L++ D P K++L L Y +++ + LELT+N+G TE +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWG-TEDDETQ 112
Query: 222 AYAQVNTSPSG 232
+Y N+ P G
Sbjct: 113 SYHNGNSDPRG 123
>pdb|3BQX|A Chain A, High Resolution Crystal Structure Of A Glyoxalase-Related
Enzyme From Fulvimarina Pelagi
Length = 150
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 31 VGDLDRTIKFYTECFGMKLLRKRDVPEEKY--SNAFLGFGPEQSHFVVELTYNYG--VTS 86
+GDL+ + +FY E FG + + PE + N F+ + V L + G VTS
Sbjct: 13 IGDLEASARFYGEGFGWAPVFRN--PEIIFYQXNGFV----LATWLVQNLQEDVGVAVTS 66
Query: 87 YDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPLKGGTTHIAFVKDPDGYIFEL 144
H A +V L E + A GG + R P GG +V DPDG+I+E+
Sbjct: 67 RPGSXALAHNVRAETEVAPLXERLVAAGGQLLRPADAPPHGGLR--GYVADPDGHIWEI 123
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H V + + FY +KLL D+P + AFL G + + L+ +
Sbjct: 11 HIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIA 70
Query: 86 SY--DIGTGFGHFAIATEDVYKLVENIRAKGGN-VTREPGPLKGGTTHIAFV--KDPDGY 140
+ G G H AI + + + ++ ++ G + EP P G +AF+ + G
Sbjct: 71 KFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARG-AQVAFLHPRSARGV 129
Query: 141 IFELIQRGPTPEPL 154
++E ++ E L
Sbjct: 130 LYEFCEKKEQAENL 143
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVEL------- 78
H Y D D K+Y E FG L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV- 134
T + ++ G H A +D+ + +R +G + + L G I F+
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFMH 131
Query: 135 -KDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|2R5V|A Chain A, Hydroxymandelate Synthase Crystal Structure
pdb|2R5V|B Chain B, Hydroxymandelate Synthase Crystal Structure
Length = 357
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 25/116 (21%)
Query: 90 GTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149
G G A+AT DV E G R PG A + + LIQR
Sbjct: 72 GDGVADIAMATSDVAAAYEAAVRAGAEAVRAPGQHSEAAVTTATIGGFGDVVHTLIQRDG 131
Query: 150 TPEPL-------------------------CQVMLRVGDLGRSIKFYEKALGMKLL 180
T L + L GDLG ++++YE+ALG + +
Sbjct: 132 TSAELPPGFTGSMDVTNHGKGDVDLLGIDHFAICLNAGDLGPTVEYYERALGFRQI 187
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF-VVELTYN 81
R H V V D+ TI+FY E G + K + L FG ++ + E+ +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEMEFE 76
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIA--FVKDPDG 139
+ G+ F I + + +V I G ++ P G T I +++DPDG
Sbjct: 77 PKASRPTPGSADLCF-ITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H + T FY E G ++LR+ PE+ L G ++ + +
Sbjct: 8 HVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARP 66
Query: 86 SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGT-THIAFVKDPDGYIFEL 144
SY G H A E + +++ + +G + EP + T F DPDG EL
Sbjct: 67 SYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLEL 124
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY 82
R H V DL++ FY G ++ +PE S F+ G + +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 83 GVTSYDIG-------TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV- 134
G+ S G G H I +++ V +++ K E + + F+
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLH 120
Query: 135 -KDPDGYIFELIQ 146
KD G + EL Q
Sbjct: 121 PKDCGGVLVELEQ 133
>pdb|1SQI|A Chain A, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
pdb|1SQI|B Chain B, Structural Basis For Inhibitor Selectivity Revealed By
Crystal Structures Of Plant And Mammalian 4-
Hydroxyphenylpyruvate Dioxygenases
Length = 393
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 17 PKKDKRRFLH---AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSH 73
PK ++ RFLH + VG+ + FY G + L + + E S + +Q
Sbjct: 9 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGL--ETGSREVVSHVIKQGK 66
Query: 74 FVVELT-----YNYGVTSYDI--GTGFGHFAIATEDVYKLVENIRAKGGNVTREP 121
V L +N + + + G G A ED +V+ R +G + REP
Sbjct: 67 IVFVLCSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCEHIVQKARERGAKIVREP 121
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 85 TSYDIGTGFGHFAIATEDVYKLVENIRAKG 114
Y+ G G H A+ TED+ + ++R +G
Sbjct: 256 VDYNGGAGVQHIALRTEDIITTIRHLRERG 285
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF-VVELTYN 81
R H V V D+ TI+FY E G + K + L FG ++ + E +
Sbjct: 23 RIDHLVLTVSDISTTIRFYEEVLGFSAVTF------KQNRKALIFGAQKINLHQQEXEFE 76
Query: 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIA--FVKDPDG 139
+ G+ F I + + +V I G ++ P G T I +++DPDG
Sbjct: 77 PKASRPTPGSADLCF-ITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDPDG 135
Query: 140 YIFELIQ 146
+ E+ Q
Sbjct: 136 NLIEISQ 142
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVEL------- 78
H Y D D K+Y E FG L + + PE+ + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 79 ---TYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV- 134
T + ++ G H A +D+ + +R +G + + L G I F
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRINFXH 131
Query: 135 -KDPDGYIFELIQ 146
K G + EL Q
Sbjct: 132 PKSGKGVLIELTQ 144
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 42 TECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101
+E G ++ R+ E Y+N PE+ V E +G+ F+ +
Sbjct: 65 SERAGGRVRTHRNSKEGWYANLGPMRIPEKHRIVREYIRKFGLN-------LNEFSQEND 117
Query: 102 DVYKLVENIRAKGGNVTREPGPLK 125
+ + ++NIR + G V ++PG LK
Sbjct: 118 NAWYFIKNIRKRVGEVNKDPGLLK 141
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 37 TIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96
T+ +E G ++ R+ E+ Y+N PE+ V E +G+ F
Sbjct: 60 TVLEASERAGGRVRTYRNDKEDWYANLGPMRLPEKHRIVREYIRKFGLQ-------LNEF 112
Query: 97 AIATEDVYKLVENIRAKGGNVTREPGPLK 125
+ ++ + ++NIR + G V ++PG LK
Sbjct: 113 SQENDNAWYFIKNIRKRVGEVKKDPGVLK 141
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 18 KKDKRRFLH---AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHF 74
K ++ RFLH + VG+ + FY G + L R + E S + +Q
Sbjct: 3 KPERGRFLHFHSVTFWVGNAKQAASFYCSKMGFEPLAYRGL--ETGSREVVSHVIKQGKI 60
Query: 75 VVELT-----YNYGVTSYDI--GTGFGHFAIATEDVYKLVENIRAKGGNVTREP 121
V L+ +N + + + G G A ED +V+ R +G + REP
Sbjct: 61 VFVLSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREP 114
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 85 TSYDIGTGFGHFAIATEDVYKLVENIRAKG 114
Y+ G G H A+ TED+ + ++R +G
Sbjct: 249 VDYNGGAGVQHIALKTEDIITAIRHLRERG 278
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 38 IKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95
I+ +C KL K +S A GFG E H +V+L V SY+ TG H
Sbjct: 49 IQSAVQC-AKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAH 105
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-EQSHFVVELT-YNYG 83
H V D D++ +FY G +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 84 VTSYDI-----GTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPD 138
I G H A EDV + + A G V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 139 GYIFEL 144
G EL
Sbjct: 127 GLPLEL 132
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 59 KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGG--N 116
KYS FL + + +L T Y+IGTG GH + K V +I N
Sbjct: 6 KYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN 65
Query: 117 VTREPGPLKGGTTHI 131
++ E L T I
Sbjct: 66 LSSEKLKLNTRVTLI 80
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 37 TIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96
T+ +E G ++ R+ E Y+N PE+ V E +G+ F
Sbjct: 73 TVLEASERAGGQVKTYRNEKEGWYANLGPMRLPEKHRIVREYIRKFGLQ-------LNEF 125
Query: 97 AIATEDVYKLVENIRAKGGNVTREPGPL 124
+ E+ + ++NIR + G V ++PG L
Sbjct: 126 SQENENAWYFIKNIRKRVGEVNKDPGVL 153
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLG------YAEEDQTT-VLELT 209
G +G + KALG KL+ TV PE LG Y+ ED VLELT
Sbjct: 151 GGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELT 205
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 93 FGHFAIATEDVYKLVENIRAKGGNVTREPGPLK 125
F+ ++ + ++NIR K G V ++PG LK
Sbjct: 109 LNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLK 141
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85
H V V D+ T KFY + G K + L FG ++ + + +L + +
Sbjct: 13 HLVLTVADIPTTTKFYEKVLGXKAVSFGS------GRIALEFGHQKIN-LHQLGHEFEPK 65
Query: 86 SYDIGTGFGHFAIATE-DVYKLVENIRAKGGNVTREPGPLK-----GGTTHIAFVKDPDG 139
+ ++ TG T+ D+ E + +G V GP+K G T F +DPDG
Sbjct: 66 AQNVRTGSADLCFITDIDLSDAXEYVENQG--VVIXEGPVKRTGAQGAITSFYF-RDPDG 122
Query: 140 YIFEL 144
+ E+
Sbjct: 123 NLIEV 127
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 67 FGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE------NIRAKGGNVTRE 120
F PE+ + E G TGFG + EDV LV ++A GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
Query: 121 PG--PLKGGTTHI 131
LK G + +
Sbjct: 190 TALRMLKAGASRL 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,494,278
Number of Sequences: 62578
Number of extensions: 333300
Number of successful extensions: 876
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 50
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)