Query 026313
Match_columns 240
No_of_seqs 225 out of 2258
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 2.1E-36 4.6E-41 245.1 26.9 233 4-236 5-237 (286)
2 TIGR02295 HpaD 3,4-dihydroxyph 100.0 3.6E-26 7.8E-31 186.4 23.1 190 20-234 1-208 (294)
3 TIGR03211 catechol_2_3 catecho 100.0 4.5E-26 9.7E-31 186.6 21.9 192 21-234 2-219 (303)
4 TIGR03213 23dbph12diox 2,3-dih 99.9 4E-26 8.7E-31 185.3 20.7 193 21-235 1-219 (286)
5 KOG2943 Predicted glyoxalase [ 99.9 4.8E-26 1E-30 170.1 16.3 203 12-231 6-219 (299)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 1.9E-21 4E-26 162.0 19.8 209 22-237 1-253 (353)
7 COG2514 Predicted ring-cleavag 99.9 7.1E-21 1.5E-25 146.4 20.3 198 20-235 7-245 (265)
8 TIGR00068 glyox_I lactoylgluta 99.9 5E-21 1.1E-25 140.9 17.8 139 12-150 6-144 (150)
9 PRK10291 glyoxalase I; Provisi 99.9 1.6E-20 3.6E-25 134.6 16.1 124 28-151 1-124 (129)
10 PLN02367 lactoylglutathione ly 99.9 3.7E-20 7.9E-25 142.2 17.4 127 21-149 73-224 (233)
11 PLN02875 4-hydroxyphenylpyruva 99.8 2.6E-19 5.7E-24 148.3 19.5 207 24-236 1-276 (398)
12 PLN03042 Lactoylglutathione ly 99.8 3E-19 6.6E-24 134.5 18.2 127 21-149 25-176 (185)
13 PRK11478 putative lyase; Provi 99.8 1.4E-19 3E-24 129.6 15.6 125 19-147 2-129 (129)
14 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 5.2E-19 1.1E-23 128.9 15.8 123 21-147 1-141 (142)
15 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1E-18 2.2E-23 123.6 16.0 114 23-146 2-126 (127)
16 cd07233 Glyoxalase_I Glyoxalas 99.8 1.2E-18 2.5E-23 123.3 16.1 120 24-145 1-121 (121)
17 KOG0638 4-hydroxyphenylpyruvat 99.8 3.9E-20 8.4E-25 144.0 7.1 215 19-237 13-277 (381)
18 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.4E-18 5.2E-23 122.2 15.3 121 22-146 2-125 (125)
19 cd07243 2_3_CTD_C C-terminal d 99.8 3.5E-18 7.6E-23 124.6 16.1 120 19-147 2-125 (143)
20 cd08342 HPPD_N_like N-terminal 99.8 4E-18 8.6E-23 123.3 16.1 120 24-150 1-126 (136)
21 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.6E-18 5.6E-23 122.1 14.2 119 23-145 1-125 (125)
22 cd07265 2_3_CTD_N N-terminal d 99.8 3.9E-18 8.4E-23 121.0 15.1 116 21-148 2-120 (122)
23 PRK04101 fosfomycin resistance 99.8 5.4E-18 1.2E-22 123.1 16.1 118 20-148 1-120 (139)
24 cd07257 THT_oxygenase_C The C- 99.8 2.4E-18 5.3E-23 126.9 13.5 119 23-148 1-126 (153)
25 TIGR03645 glyox_marine lactoyl 99.8 9E-18 1.9E-22 125.0 16.4 126 21-149 2-153 (162)
26 cd08360 MhqB_like_C C-terminal 99.8 9.2E-18 2E-22 121.1 16.0 118 22-149 2-122 (134)
27 cd09013 BphC-JF8_N_like N-term 99.8 2.1E-17 4.5E-22 117.1 15.1 114 19-147 2-118 (121)
28 cd09014 BphC-JF8_C_like C-term 99.8 2.6E-17 5.7E-22 122.9 16.3 124 19-148 2-128 (166)
29 cd07237 BphC1-RGP6_C_like C-te 99.8 4E-17 8.7E-22 120.5 15.4 122 20-149 6-133 (154)
30 PF00903 Glyoxalase: Glyoxalas 99.8 7.2E-18 1.6E-22 120.1 10.5 120 23-144 1-128 (128)
31 TIGR03081 metmalonyl_epim meth 99.8 8.1E-18 1.8E-22 120.2 10.8 119 23-146 1-128 (128)
32 cd07266 HPCD_N_class_II N-term 99.8 5.3E-17 1.1E-21 114.9 14.0 115 20-147 1-118 (121)
33 cd08361 PpCmtC_N N-terminal do 99.7 3.7E-17 7.9E-22 116.4 12.9 113 20-148 3-120 (124)
34 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 6.4E-17 1.4E-21 114.8 13.8 118 21-146 1-124 (125)
35 cd08363 FosB FosB, a fosfomyci 99.7 6E-17 1.3E-21 116.4 13.6 114 24-148 1-116 (131)
36 cd09011 Glo_EDI_BRP_like_23 Th 99.7 7.4E-17 1.6E-21 114.1 13.5 113 23-147 2-119 (120)
37 cd07247 SgaA_N_like N-terminal 99.7 1.2E-16 2.5E-21 111.9 14.4 114 24-146 1-114 (114)
38 cd08347 PcpA_C_like C-terminal 99.7 1.3E-16 2.8E-21 118.0 15.2 117 23-148 1-121 (157)
39 cd08364 FosX FosX, a fosfomyci 99.7 1.9E-16 4.1E-21 113.8 15.5 120 20-148 1-123 (131)
40 cd07256 HPCD_C_class_II C-term 99.7 1.8E-16 3.8E-21 117.9 15.8 118 22-148 2-124 (161)
41 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.4E-16 3.1E-21 111.9 14.1 117 26-146 1-119 (119)
42 cd07258 PpCmtC_C C-terminal do 99.7 1.5E-16 3.2E-21 115.5 14.4 113 25-149 1-116 (141)
43 cd07239 BphC5-RK37_C_like C-te 99.7 1.6E-16 3.6E-21 115.9 14.6 113 22-148 3-118 (144)
44 cd07252 BphC1-RGP6_N_like N-te 99.7 1.2E-16 2.5E-21 113.1 13.2 113 22-148 1-118 (120)
45 cd08343 ED_TypeI_classII_C C-t 99.7 2.7E-16 5.8E-21 113.0 15.3 116 25-149 1-119 (131)
46 cd07255 Glo_EDI_BRP_like_12 Th 99.7 4.3E-16 9.4E-21 110.8 16.2 117 22-149 1-121 (125)
47 PLN02300 lactoylglutathione ly 99.7 3E-16 6.4E-21 127.4 17.0 129 21-149 152-280 (286)
48 cd08355 Glo_EDI_BRP_like_14 Th 99.7 5.8E-16 1.3E-20 109.8 15.5 117 27-146 3-121 (122)
49 cd07240 ED_TypeI_classII_N N-t 99.7 4.5E-16 9.7E-21 109.3 14.6 111 22-147 1-114 (117)
50 cd08346 PcpA_N_like N-terminal 99.7 3.3E-16 7.2E-21 111.3 14.0 120 23-145 1-126 (126)
51 cd08351 ChaP_like ChaP, an enz 99.7 5.4E-16 1.2E-20 110.1 15.0 111 21-147 2-121 (123)
52 cd07267 THT_Oxygenase_N N-term 99.7 6.8E-16 1.5E-20 108.0 15.0 110 21-147 1-110 (113)
53 PRK06724 hypothetical protein; 99.7 5.9E-16 1.3E-20 110.5 14.7 113 20-148 4-124 (128)
54 cd08362 BphC5-RrK37_N_like N-t 99.7 6.1E-16 1.3E-20 109.2 14.6 113 21-148 1-118 (120)
55 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 1.9E-16 4.1E-21 110.2 11.7 113 24-144 1-114 (114)
56 cd08359 Glo_EDI_BRP_like_22 Th 99.7 4.9E-16 1.1E-20 109.6 13.9 111 26-146 4-119 (119)
57 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1E-15 2.2E-20 109.4 15.6 117 23-147 1-128 (128)
58 cd07249 MMCE Methylmalonyl-CoA 99.7 4.1E-16 8.9E-21 111.2 13.5 119 24-146 1-128 (128)
59 cd07264 Glo_EDI_BRP_like_15 Th 99.7 7.6E-16 1.6E-20 109.5 14.6 117 24-147 1-125 (125)
60 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 1.2E-15 2.6E-20 107.9 14.9 116 27-147 5-122 (122)
61 cd08348 BphC2-C3-RGP6_C_like T 99.7 3.2E-15 6.9E-20 107.7 16.2 119 23-149 1-122 (134)
62 PF12681 Glyoxalase_2: Glyoxal 99.7 1.3E-15 2.9E-20 105.4 12.9 108 29-145 1-108 (108)
63 TIGR03211 catechol_2_3 catecho 99.7 2E-15 4.4E-20 123.6 15.4 121 17-146 139-264 (303)
64 cd07244 FosA FosA, a Fosfomyci 99.7 1.8E-15 3.8E-20 107.2 13.0 109 23-148 1-111 (121)
65 cd08345 Fosfomycin_RP Fosfomyc 99.7 1.9E-15 4.2E-20 105.5 13.1 109 26-147 1-111 (113)
66 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 5.4E-15 1.2E-19 103.1 14.1 108 27-147 4-111 (112)
67 TIGR02295 HpaD 3,4-dihydroxyph 99.7 5.4E-15 1.2E-19 120.6 16.0 122 18-148 131-257 (294)
68 cd08354 Glo_EDI_BRP_like_13 Th 99.7 6.3E-15 1.4E-19 104.2 14.1 113 24-146 1-121 (122)
69 cd07262 Glo_EDI_BRP_like_19 Th 99.6 8.1E-15 1.8E-19 104.0 14.1 114 24-145 1-122 (123)
70 cd07254 Glo_EDI_BRP_like_20 Th 99.6 1.3E-14 2.8E-19 102.5 14.2 111 25-147 3-117 (120)
71 cd06587 Glo_EDI_BRP_like This 99.6 1.2E-14 2.7E-19 100.2 13.6 112 26-144 1-112 (112)
72 cd08344 MhqB_like_N N-terminal 99.6 1.3E-14 2.9E-19 101.2 13.6 108 22-148 1-110 (112)
73 cd07235 MRD Mitomycin C resist 99.6 1.2E-14 2.5E-19 103.0 13.4 113 24-145 1-121 (122)
74 cd08349 BLMA_like Bleomycin bi 99.6 2.6E-14 5.5E-19 99.5 14.7 110 27-146 2-112 (112)
75 COG3324 Predicted enzyme relat 99.6 3.1E-14 6.6E-19 99.2 14.7 121 19-148 5-126 (127)
76 cd08357 Glo_EDI_BRP_like_18 Th 99.6 1.6E-14 3.4E-19 102.6 12.9 113 26-146 2-124 (125)
77 TIGR03213 23dbph12diox 2,3-dih 99.6 2.4E-14 5.1E-19 116.4 15.4 119 20-147 139-263 (286)
78 cd09012 Glo_EDI_BRP_like_24 Th 99.6 1.9E-14 4.2E-19 102.2 12.7 112 25-146 2-123 (124)
79 cd08350 BLMT_like BLMT, a bleo 99.6 3.1E-14 6.7E-19 100.6 13.5 108 26-147 5-119 (120)
80 cd07261 Glo_EDI_BRP_like_11 Th 99.6 3.2E-14 6.9E-19 99.5 13.1 108 27-145 2-113 (114)
81 PF13669 Glyoxalase_4: Glyoxal 99.6 2.7E-14 5.8E-19 99.2 10.7 95 25-121 1-97 (109)
82 cd08356 Glo_EDI_BRP_like_17 Th 99.5 1.6E-13 3.4E-18 96.0 12.0 104 27-146 5-113 (113)
83 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.9E-13 6.4E-18 95.4 12.3 110 27-146 2-120 (121)
84 COG3185 4-hydroxyphenylpyruvat 99.5 3.7E-13 8.1E-18 107.3 13.6 205 20-235 19-258 (363)
85 KOG2944 Glyoxalase [Carbohydra 99.5 9.9E-13 2.2E-17 93.1 10.6 127 19-147 18-168 (170)
86 cd07250 HPPD_C_like C-terminal 99.4 2E-12 4.3E-17 98.6 11.3 100 21-122 1-113 (191)
87 PLN02367 lactoylglutathione ly 99.4 2.3E-12 4.9E-17 99.4 7.7 85 153-237 75-184 (233)
88 cd08358 Glo_EDI_BRP_like_21 Th 99.3 8.2E-12 1.8E-16 88.4 7.9 81 153-233 2-93 (127)
89 COG3565 Predicted dioxygenase 99.3 7.2E-11 1.6E-15 79.0 10.9 117 23-147 4-129 (138)
90 KOG2943 Predicted glyoxalase [ 99.3 2.1E-12 4.6E-17 97.4 4.0 86 151-236 15-111 (299)
91 TIGR01263 4HPPD 4-hydroxypheny 99.3 4.5E-11 9.8E-16 99.9 11.1 103 17-121 152-267 (353)
92 PLN03042 Lactoylglutathione ly 99.2 2.7E-11 5.9E-16 91.4 7.6 85 152-236 26-135 (185)
93 PF13468 Glyoxalase_3: Glyoxal 99.2 6.9E-10 1.5E-14 83.6 12.5 147 24-175 1-175 (175)
94 PRK10291 glyoxalase I; Provisi 99.2 1.1E-10 2.5E-15 83.3 7.0 78 159-236 2-79 (129)
95 TIGR00068 glyox_I lactoylgluta 99.1 2.8E-10 6E-15 83.6 8.4 87 150-236 14-100 (150)
96 cd06588 PhnB_like Escherichia 99.1 4.5E-09 9.7E-14 75.0 14.3 111 27-144 3-127 (128)
97 COG0346 GloA Lactoylglutathion 99.1 8E-10 1.7E-14 78.4 8.2 122 22-146 1-138 (138)
98 COG2764 PhnB Uncharacterized p 99.1 1.6E-08 3.5E-13 71.8 14.5 117 27-148 4-132 (136)
99 PF13669 Glyoxalase_4: Glyoxal 99.0 3.2E-10 7E-15 78.6 5.2 80 155-236 1-82 (109)
100 PLN02875 4-hydroxyphenylpyruva 99.0 9.7E-10 2.1E-14 91.8 8.6 101 19-121 176-295 (398)
101 COG3607 Predicted lactoylgluta 99.0 3.8E-09 8.2E-14 72.1 9.7 118 22-148 2-128 (133)
102 PF14506 CppA_N: CppA N-termin 99.0 2.7E-08 5.9E-13 67.6 13.6 114 25-148 2-115 (125)
103 cd07233 Glyoxalase_I Glyoxalas 99.0 1.7E-09 3.7E-14 76.1 8.1 83 154-236 1-84 (121)
104 cd08360 MhqB_like_C C-terminal 99.0 1.3E-09 2.7E-14 78.5 7.4 75 151-235 1-75 (134)
105 cd07243 2_3_CTD_C C-terminal d 99.0 1.6E-09 3.5E-14 78.9 7.5 76 151-235 4-80 (143)
106 cd07250 HPPD_C_like C-terminal 98.9 2E-09 4.4E-14 82.1 6.7 83 153-237 3-98 (191)
107 cd07257 THT_oxygenase_C The C- 98.9 9.8E-10 2.1E-14 80.9 4.2 77 153-236 1-81 (153)
108 cd07241 Glo_EDI_BRP_like_3 Thi 98.9 6.3E-09 1.4E-13 73.5 8.1 78 153-233 1-81 (125)
109 cd07258 PpCmtC_C C-terminal do 98.9 3.7E-09 8E-14 76.7 6.3 68 155-234 1-68 (141)
110 cd07256 HPCD_C_class_II C-term 98.9 1.2E-08 2.7E-13 75.7 8.1 74 151-233 1-74 (161)
111 TIGR03645 glyox_marine lactoyl 98.8 1.1E-08 2.4E-13 76.1 7.0 82 152-236 3-107 (162)
112 cd07249 MMCE Methylmalonyl-CoA 98.8 1.4E-08 2.9E-13 72.0 6.7 79 154-236 1-86 (128)
113 PRK11478 putative lyase; Provi 98.8 1.1E-08 2.4E-13 72.8 6.2 81 152-236 5-89 (129)
114 TIGR03081 metmalonyl_epim meth 98.8 1.6E-08 3.4E-13 71.8 6.8 80 153-236 1-86 (128)
115 cd08342 HPPD_N_like N-terminal 98.8 1.8E-08 3.9E-13 72.7 7.2 78 154-237 1-84 (136)
116 cd08353 Glo_EDI_BRP_like_7 Thi 98.8 1.5E-08 3.2E-13 73.5 6.7 83 152-237 2-102 (142)
117 cd07237 BphC1-RGP6_C_like C-te 98.8 1.7E-08 3.7E-13 74.4 7.1 77 150-234 6-85 (154)
118 PRK01037 trmD tRNA (guanine-N( 98.8 9.9E-08 2.1E-12 77.4 10.5 105 23-147 247-354 (357)
119 cd08347 PcpA_C_like C-terminal 98.8 3.5E-08 7.5E-13 73.0 7.3 73 154-232 2-75 (157)
120 PF14696 Glyoxalase_5: Hydroxy 98.7 1.1E-07 2.5E-12 67.8 9.4 122 19-149 5-128 (139)
121 cd09013 BphC-JF8_N_like N-term 98.7 4.6E-08 9.9E-13 68.9 7.3 69 152-233 5-73 (121)
122 KOG2944 Glyoxalase [Carbohydra 98.7 4.1E-09 8.9E-14 74.9 1.8 83 154-236 23-129 (170)
123 cd09014 BphC-JF8_C_like C-term 98.7 6.4E-08 1.4E-12 72.2 7.1 77 152-234 5-81 (166)
124 cd08352 Glo_EDI_BRP_like_1 Thi 98.7 8.4E-08 1.8E-12 67.5 7.3 80 153-236 3-86 (125)
125 COG3185 4-hydroxyphenylpyruvat 98.6 1.3E-07 2.8E-12 76.1 7.3 104 18-123 162-276 (363)
126 cd08346 PcpA_N_like N-terminal 98.6 3.2E-07 6.9E-12 64.7 8.8 80 154-233 2-84 (126)
127 COG2514 Predicted ring-cleavag 98.6 3.3E-07 7.1E-12 71.4 9.2 79 19-103 164-243 (265)
128 cd07239 BphC5-RK37_C_like C-te 98.6 1.8E-07 3.9E-12 68.2 7.0 71 151-235 2-72 (144)
129 cd07265 2_3_CTD_N N-terminal d 98.6 1.5E-07 3.3E-12 66.3 6.4 69 152-232 3-71 (122)
130 PF00903 Glyoxalase: Glyoxalas 98.6 6.9E-08 1.5E-12 68.1 3.9 47 153-199 1-49 (128)
131 cd08348 BphC2-C3-RGP6_C_like T 98.5 3.6E-07 7.9E-12 65.4 7.4 77 153-234 1-77 (134)
132 cd07245 Glo_EDI_BRP_like_9 Thi 98.5 1.8E-07 3.8E-12 64.5 4.8 76 154-235 1-77 (114)
133 cd08343 ED_TypeI_classII_C C-t 98.5 6E-07 1.3E-11 64.1 7.4 71 155-234 1-71 (131)
134 PRK10148 hypothetical protein; 98.5 2.8E-05 6.1E-10 56.7 16.1 117 27-151 5-145 (147)
135 cd07255 Glo_EDI_BRP_like_12 Th 98.5 1E-06 2.2E-11 62.2 7.9 72 153-232 2-74 (125)
136 PRK04101 fosfomycin resistance 98.5 4.4E-07 9.6E-12 65.6 6.0 73 153-235 4-78 (139)
137 cd08363 FosB FosB, a fosfomyci 98.5 2.8E-07 6E-12 66.0 4.9 69 154-232 1-69 (131)
138 cd07252 BphC1-RGP6_N_like N-te 98.5 5.9E-07 1.3E-11 63.2 6.4 66 153-232 2-67 (120)
139 cd07263 Glo_EDI_BRP_like_16 Th 98.4 3.4E-07 7.5E-12 63.7 5.1 79 156-236 1-81 (119)
140 cd07267 THT_Oxygenase_N N-term 98.4 6.2E-07 1.3E-11 62.4 5.5 67 153-234 3-69 (113)
141 cd08361 PpCmtC_N N-terminal do 98.4 1E-06 2.2E-11 62.4 6.2 65 152-232 5-69 (124)
142 cd06587 Glo_EDI_BRP_like This 98.4 1.3E-06 2.9E-11 59.5 6.2 74 156-235 1-74 (112)
143 cd07240 ED_TypeI_classII_N N-t 98.4 2E-06 4.4E-11 59.8 7.1 67 153-233 2-68 (117)
144 cd07266 HPCD_N_class_II N-term 98.3 1.8E-06 3.9E-11 60.6 6.3 68 152-232 3-70 (121)
145 cd07242 Glo_EDI_BRP_like_6 Thi 98.3 3.8E-06 8.2E-11 59.5 7.8 72 153-232 1-78 (128)
146 cd08364 FosX FosX, a fosfomyci 98.2 3.1E-06 6.8E-11 60.5 6.2 72 153-232 4-76 (131)
147 cd08362 BphC5-RrK37_N_like N-t 98.2 2.9E-06 6.3E-11 59.4 5.8 66 153-232 3-68 (120)
148 cd07253 Glo_EDI_BRP_like_2 Thi 98.2 5.1E-06 1.1E-10 58.3 6.3 72 153-232 3-77 (125)
149 cd07247 SgaA_N_like N-terminal 98.2 5E-06 1.1E-10 57.6 6.0 75 154-236 1-75 (114)
150 cd07244 FosA FosA, a Fosfomyci 98.2 3.4E-06 7.3E-11 59.3 5.2 66 153-231 1-66 (121)
151 cd08355 Glo_EDI_BRP_like_14 Th 98.2 9.2E-06 2E-10 57.1 7.4 77 157-237 3-83 (122)
152 cd07254 Glo_EDI_BRP_like_20 Th 98.0 2.1E-05 4.5E-10 55.1 7.0 67 155-233 3-69 (120)
153 PRK06724 hypothetical protein; 98.0 1.5E-05 3.4E-10 56.7 6.0 29 152-180 6-37 (128)
154 cd08345 Fosfomycin_RP Fosfomyc 98.0 6.9E-06 1.5E-10 56.8 4.1 64 156-231 1-64 (113)
155 cd07246 Glo_EDI_BRP_like_8 Thi 98.0 4.3E-05 9.3E-10 53.4 7.2 77 157-237 5-83 (122)
156 cd08354 Glo_EDI_BRP_like_13 Th 97.9 2.2E-05 4.7E-10 55.0 5.5 70 154-231 1-76 (122)
157 cd07262 Glo_EDI_BRP_like_19 Th 97.9 4.3E-05 9.4E-10 53.7 6.6 72 154-233 1-75 (123)
158 cd08351 ChaP_like ChaP, an enz 97.9 1.9E-05 4.2E-10 55.6 4.8 30 152-181 3-32 (123)
159 cd07264 Glo_EDI_BRP_like_15 Th 97.9 2.6E-05 5.7E-10 54.8 5.2 28 154-181 1-28 (125)
160 cd09011 Glo_EDI_BRP_like_23 Th 97.8 3.3E-05 7.2E-10 54.1 4.7 29 153-181 2-30 (120)
161 cd08349 BLMA_like Bleomycin bi 97.8 7.2E-05 1.6E-09 51.4 5.9 69 158-235 3-71 (112)
162 PF12681 Glyoxalase_2: Glyoxal 97.8 5.1E-05 1.1E-09 51.8 5.0 71 159-237 1-71 (108)
163 cd08359 Glo_EDI_BRP_like_22 Th 97.7 7.6E-05 1.6E-09 52.0 5.1 73 156-237 4-81 (119)
164 KOG0638 4-hydroxyphenylpyruvat 97.7 3.9E-05 8.5E-10 61.1 3.4 105 16-122 171-292 (381)
165 cd07238 Glo_EDI_BRP_like_5 Thi 97.7 9.9E-05 2.1E-09 50.9 5.0 69 157-237 4-72 (112)
166 cd08344 MhqB_like_N N-terminal 97.6 0.00016 3.5E-09 49.9 5.1 29 153-182 2-30 (112)
167 cd08350 BLMT_like BLMT, a bleo 97.5 0.0003 6.5E-09 49.2 5.6 68 157-237 6-73 (120)
168 cd08357 Glo_EDI_BRP_like_18 Th 97.5 0.00014 3E-09 51.1 3.8 27 156-182 2-28 (125)
169 cd07261 Glo_EDI_BRP_like_11 Th 97.5 0.00031 6.8E-09 48.5 5.6 67 157-232 2-69 (114)
170 COG3324 Predicted enzyme relat 97.3 0.00044 9.6E-09 48.6 4.8 43 151-193 7-49 (127)
171 cd08356 Glo_EDI_BRP_like_17 Th 97.3 0.00043 9.4E-09 48.0 4.1 66 157-237 5-70 (113)
172 cd09012 Glo_EDI_BRP_like_24 Th 97.2 0.00085 1.8E-08 47.1 5.5 27 155-182 2-28 (124)
173 PF13468 Glyoxalase_3: Glyoxal 96.9 0.0024 5.1E-08 48.0 5.6 76 154-235 1-90 (175)
174 PF15067 FAM124: FAM124 family 96.8 0.04 8.6E-07 42.6 11.4 105 22-144 127-235 (236)
175 COG0346 GloA Lactoylglutathion 96.7 0.0015 3.3E-08 45.6 3.2 33 153-185 2-34 (138)
176 cd07251 Glo_EDI_BRP_like_10 Th 96.7 0.0018 3.9E-08 45.0 3.5 26 157-182 2-27 (121)
177 PF06983 3-dmu-9_3-mt: 3-demet 96.4 0.17 3.7E-06 35.2 12.6 101 26-145 6-116 (116)
178 cd07235 MRD Mitomycin C resist 96.0 0.0055 1.2E-07 42.7 2.5 27 154-181 1-27 (122)
179 PF14507 CppA_C: CppA C-termin 95.4 0.11 2.3E-06 35.0 6.6 90 24-143 6-99 (101)
180 PF14506 CppA_N: CppA N-termin 94.9 0.11 2.4E-06 35.9 5.8 28 156-183 3-30 (125)
181 COG3565 Predicted dioxygenase 94.6 0.024 5.2E-07 38.6 1.9 30 153-182 4-33 (138)
182 cd06588 PhnB_like Escherichia 93.9 0.35 7.5E-06 34.1 7.0 27 158-184 4-31 (128)
183 PF14696 Glyoxalase_5: Hydroxy 92.4 0.41 8.9E-06 34.4 5.2 76 153-237 9-88 (139)
184 COG2764 PhnB Uncharacterized p 92.0 0.82 1.8E-05 32.7 6.4 29 159-187 6-35 (136)
185 PF06185 YecM: YecM protein; 91.0 3.1 6.7E-05 31.3 8.8 86 21-109 32-123 (185)
186 COG3607 Predicted lactoylgluta 88.5 0.22 4.8E-06 34.6 1.0 29 154-183 4-32 (133)
187 PRK01037 trmD tRNA (guanine-N( 87.8 0.46 9.9E-06 39.4 2.6 28 152-179 246-273 (357)
188 PRK11700 hypothetical protein; 86.5 7.2 0.00016 29.4 8.0 77 21-101 37-119 (187)
189 cd07268 Glo_EDI_BRP_like_4 Thi 85.6 8.9 0.00019 27.7 7.8 74 24-101 2-81 (149)
190 PF14507 CppA_C: CppA C-termin 79.2 1 2.3E-05 30.3 1.1 22 154-176 6-27 (101)
191 COG4747 ACT domain-containing 77.2 12 0.00027 25.9 5.8 91 21-119 39-135 (142)
192 cd04882 ACT_Bt0572_2 C-termina 70.6 11 0.00023 22.4 4.1 26 92-117 39-64 (65)
193 PF13670 PepSY_2: Peptidase pr 67.0 19 0.00041 23.1 4.9 46 102-149 30-75 (83)
194 cd04883 ACT_AcuB C-terminal AC 65.2 19 0.00041 21.9 4.5 28 93-120 42-71 (72)
195 PF07063 DUF1338: Domain of un 56.2 16 0.00034 30.1 3.6 30 89-118 181-216 (302)
196 cd04895 ACT_ACR_1 ACT domain-c 56.2 44 0.00096 20.9 4.9 40 103-142 15-55 (72)
197 PRK10148 hypothetical protein; 55.8 12 0.00027 27.1 2.7 26 158-183 6-32 (147)
198 PF02208 Sorb: Sorbin homologo 46.2 5.8 0.00013 22.2 -0.2 27 20-46 8-34 (47)
199 cd04906 ACT_ThrD-I_1 First of 46.1 44 0.00095 21.5 3.9 27 93-119 41-71 (85)
200 PF09066 B2-adapt-app_C: Beta2 43.9 1E+02 0.0022 20.9 6.6 68 101-172 36-107 (114)
201 COG3865 Uncharacterized protei 40.5 1.4E+02 0.0031 21.6 11.1 100 30-147 12-124 (151)
202 cd04908 ACT_Bt0572_1 N-termina 37.5 73 0.0016 19.1 3.8 23 95-117 42-64 (66)
203 cd04897 ACT_ACR_3 ACT domain-c 35.7 1.2E+02 0.0025 19.2 4.9 40 103-142 15-55 (75)
204 PF08445 FR47: FR47-like prote 35.4 1.1E+02 0.0023 19.7 4.5 24 28-52 59-82 (86)
205 COG3102 Uncharacterized protei 34.5 2E+02 0.0042 21.5 6.9 83 22-109 38-128 (185)
206 TIGR00318 cyaB adenylyl cyclas 34.5 1.9E+02 0.0042 21.4 9.6 81 96-183 6-105 (174)
207 KOG4657 Uncharacterized conser 31.2 40 0.00086 26.3 2.1 34 33-69 146-179 (246)
208 PF07283 TrbH: Conjugal transf 31.0 1.5E+02 0.0032 20.8 4.7 19 103-121 38-56 (121)
209 KOG4657 Uncharacterized conser 30.9 1.3E+02 0.0027 23.6 4.7 21 161-181 144-164 (246)
210 PF13225 DUF4033: Domain of un 30.7 64 0.0014 21.0 2.6 29 166-194 48-76 (86)
211 cd04885 ACT_ThrD-I Tandem C-te 30.6 1E+02 0.0023 18.6 3.7 26 92-117 38-66 (68)
212 cd04886 ACT_ThrD-II-like C-ter 30.5 1E+02 0.0022 18.1 3.7 23 96-118 47-72 (73)
213 COG1791 Uncharacterized conser 30.2 94 0.002 23.2 3.8 81 101-182 78-163 (181)
214 PTZ00330 acetyltransferase; Pr 29.5 82 0.0018 22.0 3.5 26 24-52 116-141 (147)
215 PRK00969 hypothetical protein; 28.8 1.3E+02 0.0028 26.7 5.0 77 102-182 325-407 (508)
216 PF13176 TPR_7: Tetratricopept 24.4 54 0.0012 16.9 1.3 18 30-47 11-28 (36)
217 COG0456 RimI Acetyltransferase 24.4 1.1E+02 0.0023 22.2 3.5 28 25-53 127-155 (177)
218 PRK10562 putative acetyltransf 24.3 1.3E+02 0.0029 21.0 3.9 23 32-55 106-128 (145)
219 COG3603 Uncharacterized conser 24.1 97 0.0021 21.6 2.7 23 95-117 104-126 (128)
220 PF11080 DUF2622: Protein of u 23.5 1.7E+02 0.0036 19.6 3.7 31 101-146 21-51 (96)
221 KOG3551 Syntrophins (type beta 23.1 1.2E+02 0.0026 25.9 3.6 35 135-173 232-266 (506)
222 PHA02754 hypothetical protein; 22.9 1.8E+02 0.0039 17.3 3.3 43 103-147 20-62 (67)
223 COG1437 CyaB Adenylate cyclase 22.8 3.4E+02 0.0074 20.5 9.3 87 96-183 6-106 (178)
224 cd04909 ACT_PDH-BS C-terminal 22.4 1.1E+02 0.0024 18.2 2.7 17 101-117 53-69 (69)
225 PF00583 Acetyltransf_1: Acety 22.3 82 0.0018 19.3 2.2 25 23-48 58-83 (83)
226 COG0026 PurK Phosphoribosylami 21.7 5.2E+02 0.011 22.2 7.7 97 132-233 249-354 (375)
227 TIGR03268 methan_mark_3 putati 21.5 2.3E+02 0.0049 25.2 5.1 77 102-182 322-404 (503)
228 PF02952 Fucose_iso_C: L-fucos 21.1 1.2E+02 0.0026 21.6 3.0 27 24-50 113-139 (142)
229 PF00585 Thr_dehydrat_C: C-ter 20.7 1.6E+02 0.0035 19.2 3.3 28 92-119 50-80 (91)
230 PRK10234 DNA-binding transcrip 20.5 1.9E+02 0.0041 20.2 3.7 47 99-145 23-69 (118)
231 PRK10140 putative acetyltransf 20.2 1.9E+02 0.004 20.4 4.0 29 23-52 112-141 (162)
232 PRK10146 aminoalkylphosphonic 20.2 1E+02 0.0022 21.4 2.5 27 23-50 109-136 (144)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=2.1e-36 Score=245.11 Aligned_cols=233 Identities=79% Similarity=1.295 Sum_probs=185.4
Q ss_pred CCcccchhhhhcCCcCCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC
Q 026313 4 ASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG 83 (240)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~ 83 (240)
.|.+++.+++.+.+.|.+.+|+|+.|.|+|++++++||+++|||++..+...+...+..+++..++...++.+++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~ 84 (286)
T PLN02300 5 ASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYG 84 (286)
T ss_pred cccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCC
Confidence 34566777888999899999999999999999999999999999998765444445566777766555566677765433
Q ss_pred CccccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCCCCceeEEEEecC
Q 026313 84 VTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGD 163 (240)
Q Consensus 84 ~~~~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~~hv~l~~~d 163 (240)
......+.|+.|++|.|+|+++++++|+++|+++...+...+++....+||+||+|+.|||++....+.++.|+.|.++|
T Consensus 85 ~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d 164 (286)
T PLN02300 85 VDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGD 164 (286)
T ss_pred CCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCC
Confidence 33334556889999999999999999999999988877666665555588999999999999999889999999999999
Q ss_pred ccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcccc
Q 026313 164 LGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 164 ~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~ 236 (240)
++++.+||+++|||+++.....++..+..+++..+.......+++..+.+...+..|++++|++|.|+|+...
T Consensus 165 ~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~ 237 (286)
T PLN02300 165 LDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKT 237 (286)
T ss_pred HHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHH
Confidence 9999999999999999876555556677787766443334567775554433334578999999999998654
No 2
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.95 E-value=3.6e-26 Score=186.39 Aligned_cols=190 Identities=22% Similarity=0.271 Sum_probs=136.1
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~ 99 (240)
+|.+|+||.|.|+|++++++||+++|||++..+.. ..+++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 37899999999999999999999999999876532 134454222111222333221 22468899999
Q ss_pred eC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC---------------CCCCceeEEEEe
Q 026313 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (240)
Q Consensus 100 v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------~~~~~~hv~l~~ 161 (240)
|+ |+++++++|+++|+++...+. +++ ...++|+||+|+.|||+.... .+.+++|+.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~-~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQ-PEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCC-ceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 799999999999998766432 222 345899999999999987431 124689999999
Q ss_pred cCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcc
Q 026313 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSI 234 (240)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~ 234 (240)
+|++++.+||+++|||++..+...+.+.....|+.++.. ++.+.+. . ..+.|++|+||.|+|+.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-----~~~~~~~Hiaf~v~d~~ 208 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALT--N-----GNGPRLHHIAYWVHDPL 208 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEee--c-----CCCCceeeEEEEcCCHH
Confidence 999999999999999999877544444444566665433 2334432 1 12458999999999953
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.95 E-value=4.5e-26 Score=186.57 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=134.0
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
+++|+|+.|.|+|++++++||+++|||++..+... .+++.......+..+.+... ...|+.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999998765431 33443321111222333221 234789999999
Q ss_pred C---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC---------------------CCCcee
Q 026313 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (240)
Q Consensus 101 ~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~---------------------~~~~~h 156 (240)
+ |+++++++|+++|+++...+.....+.+..++|.||+|+.|||++.... +.+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7999999999999988655432222223448999999999999975421 234899
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcce-eEEEeccccCCceeEEEEEEecCCcccccCcc-eeEEEEcCCCcc
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNA-YAQVNTSPSGSI 234 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g-~~Hiaf~v~di~ 234 (240)
|.|.|+|++++.+||+++|||++.++...+++.. ...|+..+.. ++.+.+... .+.| ++|+||.|+|+.
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD-------PEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC-------CCCCceEEEEEEcCCHH
Confidence 9999999999999999999999987754444332 4456655432 222332111 1224 999999999753
No 4
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.95 E-value=4e-26 Score=185.33 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=135.9
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
|.+|+|+.|.|+|+++|++||+++|||++..+.. . ...|+..+... ..+.+.... ..++.+++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCc--eEEEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999999765422 1 13455554322 223333221 13677899999
Q ss_pred Cc---HHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCCEEEEEEcCCC------------------CCCceeE
Q 026313 101 ED---VYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRGPT------------------PEPLCQV 157 (240)
Q Consensus 101 ~d---l~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~DPdG~~iel~~~~~~------------------~~~~~hv 157 (240)
++ ++++.++|+++|+++...+.. ...+....++|.|||||.+|++..... +.+++||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 899999999999988765431 112333459999999999999864310 2268999
Q ss_pred EEEecCccccHHHHHHhcCCeeeeeecC--CCc-ceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcc
Q 026313 158 MLRVGDLGRSIKFYEKALGMKLLRTVDK--PEY-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSI 234 (240)
Q Consensus 158 ~l~~~d~~~~~~fy~~~lG~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~ 234 (240)
.|.|+|++++.+||+++|||++++.... +++ .+..+|+++++. ++.+.+... ..+.+++|+||.|+|+.
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~------~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAG------PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecC------CCCCceEEEEEEcCCHH
Confidence 9999999999999999999999876432 222 224567777654 233444211 12348999999999875
Q ss_pred c
Q 026313 235 S 235 (240)
Q Consensus 235 ~ 235 (240)
+
T Consensus 219 ~ 219 (286)
T TIGR03213 219 D 219 (286)
T ss_pred H
Confidence 4
No 5
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.8e-26 Score=170.11 Aligned_cols=203 Identities=54% Similarity=0.970 Sum_probs=170.7
Q ss_pred hhhcCCcCCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCC-----------CceeeEEeecCCCcceeEEEEEe
Q 026313 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTY 80 (240)
Q Consensus 12 ~~~~~~~~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~ 80 (240)
++......+-.+.-|+.+.|.|.+++++||+++||+++......++ +.+..+++++|++..|+++++++
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 4556666677889999999999999999999999999987666655 57889999999999999999999
Q ss_pred ccCCccccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCCCCceeEEEE
Q 026313 81 NYGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLR 160 (240)
Q Consensus 81 ~~~~~~~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~~hv~l~ 160 (240)
+++...+.-|+++.+|.+.++|+-...+.+...|.+ .++..++++.||||+.|+|.+..+.+.++..|.|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 999999999999999999999988877777765542 22333488999999999999988889999999999
Q ss_pred ecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 161 VGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 161 ~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
|+|++++..||.+.|||++.+. +..++...+++++++ .+||++.+.+... +..|+..+||+.+
T Consensus 157 VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~q--~~LElt~~~~~id--~~kg~griafaip 219 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDEQ--CVLELTYNYDVID--RAKGFGRIAFAIP 219 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCcc--eEEEEEeccCccc--ccccceeEEEecc
Confidence 9999999999999999999874 345678889998874 6899999987653 3345666666544
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.89 E-value=1.9e-21 Score=162.05 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=135.3
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCc----cc--cCCCCcee
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT----SY--DIGTGFGH 95 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~----~~--~~~~g~~~ 95 (240)
++++||.+.|+|++++.+||++.|||++..+....... ..+.+..| . ..+.+..+.... .+ .+++|+.+
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G--~--~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG--Q--INFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC--C--EEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 36899999999999999999999999998763222221 23333332 2 334444332211 11 36789999
Q ss_pred EEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC---------------------C----
Q 026313 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------------T---- 150 (240)
Q Consensus 96 i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------------~---- 150 (240)
|+|.|+|++++++++.++|+.+..+|.....|...+.-+..++|..+.|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999887665431122222234555555555554210 0
Q ss_pred CCCceeEEEEec--CccccHHHHHHhcCCeeeeeecCCC--cceeEEEeccccCCceeEEEEEEecCC---c------cc
Q 026313 151 PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV---T------EY 217 (240)
Q Consensus 151 ~~~~~hv~l~~~--d~~~~~~fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~---~------~~ 217 (240)
-..++|+++.|+ |++++..||+++|||++.......+ .......+.... ....|++...... . ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~--g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD--GKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC--CcEEEEEeccCCCCCCCHHHHHHHH
Confidence 023899999999 9999999999999999877654221 122222232211 1355666532111 1 13
Q ss_pred ccCcceeEEEEcCCCccccc
Q 026313 218 TKGNAYAQVNTSPSGSISNY 237 (240)
Q Consensus 218 ~~g~g~~Hiaf~v~di~~~~ 237 (240)
+.|.|++||||.|+||...+
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~ 253 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTV 253 (353)
T ss_pred cCCCCccEEEEEcCCHHHHH
Confidence 45789999999999997653
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.89 E-value=7.1e-21 Score=146.36 Aligned_cols=198 Identities=18% Similarity=0.262 Sum_probs=141.6
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEecc-CCccccCCCCceeEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY-GVTSYDIGTGFGHFAI 98 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~-~~~~~~~~~g~~~i~~ 98 (240)
..+.+..+.|.|+|++.+..||+++||+++..+... .+.+..+.. ..+.+.+.+ .........|+.|++|
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~Af 77 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTAF 77 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE---EEEEEEeCCCCCCCCccccceeeeee
Confidence 456789999999999999999999999999987552 455655543 235555533 2333356679999999
Q ss_pred EeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC-------------------------
Q 026313 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT------------------------- 150 (240)
Q Consensus 99 ~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~------------------------- 150 (240)
.+++ +..+..++.+.|..+.. .. +......+||.||+||.||++..++.
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~G-a~--DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~ 154 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLVG-AS--DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEE 154 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCcccc-cC--cchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhh
Confidence 9985 78888899999988753 22 22223349999999999999977431
Q ss_pred -----------CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc-cc
Q 026313 151 -----------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YT 218 (240)
Q Consensus 151 -----------~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 218 (240)
...++||.|.|.|++++.+||.++|||++..+.. ...|+..|+.|||.....=......+ ..
T Consensus 155 ~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~ 228 (265)
T COG2514 155 ATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNA 228 (265)
T ss_pred ccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCC
Confidence 1238999999999999999999999999998721 45788888876654333211111111 11
Q ss_pred cCcceeEEEEcCCCccc
Q 026313 219 KGNAYAQVNTSPSGSIS 235 (240)
Q Consensus 219 ~g~g~~Hiaf~v~di~~ 235 (240)
.-.|+.++.+.+++-..
T Consensus 229 ~~~GLa~~~i~~~~~~~ 245 (265)
T COG2514 229 NASGLAWLEIHTPDPEK 245 (265)
T ss_pred CCCCcceEEEEcCCccc
Confidence 22389999998887533
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.88 E-value=5e-21 Score=140.87 Aligned_cols=139 Identities=64% Similarity=1.075 Sum_probs=103.3
Q ss_pred hhhcCCcCCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCC
Q 026313 12 ELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT 91 (240)
Q Consensus 12 ~~~~~~~~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~ 91 (240)
++..-+.....+|+|+.|.|+|++++++||+++|||++..+...+......+++..+.......+++...........+.
T Consensus 6 ~~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 85 (150)
T TIGR00068 6 DLVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGN 85 (150)
T ss_pred ccccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCC
Confidence 34444556788999999999999999999999999998776544444444566665443334445554433222333445
Q ss_pred CceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 026313 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (240)
Q Consensus 92 g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 150 (240)
++.|++|.|+|++++.++|.++|+++..++...+.+....+||.||+|+.|||++..+.
T Consensus 86 g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 88999999999999999999999998877655555555558899999999999987643
No 9
>PRK10291 glyoxalase I; Provisional
Probab=99.87 E-value=1.6e-20 Score=134.61 Aligned_cols=124 Identities=56% Similarity=1.006 Sum_probs=95.0
Q ss_pred EEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHHHH
Q 026313 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (240)
Q Consensus 28 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~~~ 107 (240)
.|.|+|++++++||+++|||++..+...+...+..+++..++......+++........+..+.++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999998766555556677777665443344456654433333445568999999999999999
Q ss_pred HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCC
Q 026313 108 ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (240)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 151 (240)
++|+++|+++..++...+++...+++|.||||+.|||++....+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 99999999988766555555555578899999999999987544
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=3.7e-20 Score=142.22 Aligned_cols=127 Identities=36% Similarity=0.674 Sum_probs=101.2
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCc---------------ceeEEEEEeccCCc
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYGVT 85 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~~~ 85 (240)
--.+.|+.|+|+|++++++||+++||+++..+...++.++..+++.+++.. ....|+|.++.+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 346999999999999999999999999999988888888888888653311 13468887665433
Q ss_pred ------cccCC----CCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 86 ------SYDIG----TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 86 ------~~~~~----~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
.+..+ .|+.||||.|+|+++++++|+++|+++..+|....+ ..++|++||||++|||++...
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 13332 489999999999999999999999999876654333 345889999999999999754
No 11
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.84 E-value=2.6e-19 Score=148.32 Aligned_cols=207 Identities=18% Similarity=0.235 Sum_probs=139.8
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCC--ceeeEEeecCCCcceeEEEEEeccCC-----------------
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGV----------------- 84 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~----------------- 84 (240)
++||.++|.|..++..||+..|||+.+.......+ ......++-| ...+++ ..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g--~i~fv~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG--DLVFLF--TAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC--CEEEEE--eCCCCCccccccccccccccccc
Confidence 58999999999999999999999999886553222 1223334322 333333 222100
Q ss_pred ------ccc--cCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCC----CceEEEEEECCCCCEEEEEEcCC---
Q 026313 85 ------TSY--DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKG----GTTHIAFVKDPDGYIFELIQRGP--- 149 (240)
Q Consensus 85 ------~~~--~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~DPdG~~iel~~~~~--- 149 (240)
..+ .+|+|+..|+|+|+|++++++++.++|++...++..... |...+.-+..++|..+.|++...
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 011 378899999999999999999999999998777654422 22333446778888888876421
Q ss_pred ------------C--------CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCc-----ceeEEEeccccCCcee
Q 026313 150 ------------T--------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTT 204 (240)
Q Consensus 150 ------------~--------~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 204 (240)
. -..++|+++++++++++..||+++|||+.....+.++. +.....+..++ ...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcE
Confidence 0 12589999999999999999999999998865543221 12344444332 234
Q ss_pred EEEEEEecC--C-c-------ccccCcceeEEEEcCCCcccc
Q 026313 205 VLELTYNYG--V-T-------EYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 205 ~l~~~~~~~--~-~-------~~~~g~g~~Hiaf~v~di~~~ 236 (240)
.++|..... . . ..++|.|+|||||.|+||+.+
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~a 276 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGT 276 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHH
Confidence 555543221 1 1 135678999999999999764
No 12
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.84 E-value=3e-19 Score=134.48 Aligned_cols=127 Identities=35% Similarity=0.655 Sum_probs=96.4
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCc---------------ceeEEEEEeccCCc
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYGVT 85 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~~~ 85 (240)
--++.|+.|+|+|++++++||+++|||++..+...+..+++.+++.++... ....++|..+....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 457999999999999999999999999998887666666777777643211 12357777643322
Q ss_pred c------cc----CCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 86 S------YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 86 ~------~~----~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
. +. .+.|+.||+|.|+|+++++++|+++|+.+...+.... ...++|++||||++|||++...
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 1 22 1248999999999999999999999999886554322 2344788999999999998753
No 13
>PRK11478 putative lyase; Provisional
Probab=99.84 E-value=1.4e-19 Score=129.65 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC---CccccCCCCcee
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGH 95 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~---~~~~~~~~g~~~ 95 (240)
+.+.+|+||+|.|+|++++++||+++|||++..+...+........+..+. ...+++..... ........|+.|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 468899999999999999999999999999875432221111111222221 22344443211 111123357899
Q ss_pred EEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 96 i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
++|.|+|+++++++|+++|+++...+....+|. .++||.||+|+.|||++.
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 999999999999999999999764433333443 458999999999999873
No 14
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.83 E-value=5.2e-19 Score=128.88 Aligned_cols=123 Identities=20% Similarity=0.325 Sum_probs=87.6
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCC-----------CceeeEEeecCCCcceeEEEEEeccCC----c
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGV----T 85 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~----~ 85 (240)
|++++||+|.|+|++++++||++ |||++..+...++ .....+++.... ....+++...... .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCc
Confidence 56899999999999999999998 9999865543221 123344454322 2333555442111 1
Q ss_pred ---cccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 86 ---SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 86 ---~~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
....+.|+.||||.|+|+++++++|+++|+++..++....++ .+.+|++||+|+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 112345789999999999999999999999988765544444 3448999999999999984
No 15
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=1e-18 Score=123.60 Aligned_cols=114 Identities=45% Similarity=0.818 Sum_probs=86.3
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCC-----------CceeeEEeecCCCcceeEEEEEeccCCccccCCC
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT 91 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~ 91 (240)
++.|++|.|+|+++|++||+++|||++..+...++ +.+..+++.+++...+..+++.++.+...+..+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999877665444 3334455665544556778888876655555555
Q ss_pred CceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 92 g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+ +++|.|++. ++.++|+++|+++...+. + ++|+.||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 5 677777766 556999999998876443 2 4899999999999974
No 16
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.82 E-value=1.2e-18 Score=123.30 Aligned_cols=120 Identities=53% Similarity=0.952 Sum_probs=88.4
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC-ccccCCCCceeEEEEeCc
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIATED 102 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~~~g~~~i~~~v~d 102 (240)
+.|+.|.|+|++++.+||+++|||++..+...++.+...+++..........+.+...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999987654444345566676543112233444433221 223344578999999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
+++++++|.++|+++..++... + ....++|+||+|+++|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 9999999999999998877655 3 334588999999999985
No 17
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.9e-20 Score=144.03 Aligned_cols=215 Identities=21% Similarity=0.322 Sum_probs=147.5
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCc-----cccCCCCc
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-----SYDIGTGF 93 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-----~~~~~~g~ 93 (240)
-.+.+++||.+.|.|...+..|||..|||++....+.+.+....+...+.+....+++.-..++..+ -.++|.|.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 3578999999999999999999999999998875433322111222222222333333322222221 12478899
Q ss_pred eeEEEEeCcHHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEEEcCCC-----------------C---
Q 026313 94 GHFAIATEDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRGPT-----------------P--- 151 (240)
Q Consensus 94 ~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DPdG~~iel~~~~~~-----------------~--- 151 (240)
..+||+|+|++++.+.+.++|+.+..+|..... |...++.+..+......+++.... |
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~ 172 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLP 172 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCC
Confidence 999999999999999999999999988776554 444456677777666666654310 1
Q ss_pred ----CCceeEEEEec--CccccHHHHHHhcCCeeeeeecCCCcc-----eeEEEeccccCCceeEEEEEEecCCc-----
Q 026313 152 ----EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYK-----YTLAMLGYAEEDQTTVLELTYNYGVT----- 215 (240)
Q Consensus 152 ----~~~~hv~l~~~--d~~~~~~fy~~~lG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~----- 215 (240)
.+++|++.+++ .++.+.+||.+.|||.....++++.-. .+.+.+...+ .+|.+..+++..
T Consensus 173 ~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~----esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 173 KGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYE----ESIKMPINEPAPGKKKK 248 (381)
T ss_pred ccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCC----ccEEEeccCCCCCCccH
Confidence 24899999999 788999999999999887665533211 1222233222 235576776543
Q ss_pred -------ccccCcceeEEEEcCCCccccc
Q 026313 216 -------EYTKGNAYAQVNTSPSGSISNY 237 (240)
Q Consensus 216 -------~~~~g~g~~Hiaf~v~di~~~~ 237 (240)
.+++|.|++|+|+.++||++++
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai 277 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAI 277 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHH
Confidence 2678999999999999999864
No 18
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=2.4e-18 Score=122.20 Aligned_cols=121 Identities=27% Similarity=0.351 Sum_probs=84.0
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC---CccccCCCCceeEEE
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGHFAI 98 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~---~~~~~~~~g~~~i~~ 98 (240)
.+|+||.|.|+|++++++||+++|||++..+...+........+.... .. .+++..... ......+.|+.|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~--~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG-GY--QLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC-Cc--EEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 579999999999999999999999999876543322221122232211 22 233332211 111123457899999
Q ss_pred EeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 99 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
.|+|++++.++|+++|+++...+....++. ..+++.||+|+.||++|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFTGK-RFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCCce-EEEEEECCCCCEEEecC
Confidence 999999999999999999876554444443 34899999999999975
No 19
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.81 E-value=3.5e-18 Score=124.56 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=85.3
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCc-eeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~ 97 (240)
+.+.+|+|++|.|+|++++.+||+++|||++..+...+.+. ...+|+..+.. .+ .+.+... .+.++.|+|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h-~~~~~~~-------~~~~~~Hia 72 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PH-DIAFVGG-------PDGKLHHFS 72 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cc-eEEEecC-------CCCCceEEE
Confidence 45789999999999999999999999999987664332222 23445554432 22 2333211 135789999
Q ss_pred EEeCcHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 98 IATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 98 ~~v~dl~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
|.|+|+++ +.++|+++|+++...|.....+....+||.||||+.|||...
T Consensus 73 f~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 73 FFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99998777 678999999998755543332233458999999999999764
No 20
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=4e-18 Score=123.33 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=88.9
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc------ccCCCCceeEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS------YDIGTGFGHFA 97 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~~~g~~~i~ 97 (240)
|+|+.|.|+|++++++||+++|||++..+...+ +....++..+ . ..+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g--~--~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG--D--INFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC--C--EEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999988764322 1223444322 2 2344433221111 12456889999
Q ss_pred EEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCC
Q 026313 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (240)
Q Consensus 98 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 150 (240)
|.|+|+++++++|+++|+++..+|...+++. ..++++||+|+.|+|++....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~-~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGEL-KIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeE-EEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999998887755544 458899999999999997654
No 21
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=2.6e-18 Score=122.13 Aligned_cols=119 Identities=27% Similarity=0.418 Sum_probs=84.6
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc---ccCCCCceeEEEE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHFAIA 99 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~~~g~~~i~~~ 99 (240)
+|+||.|.|+|++++++||+++|||++..+...+..++...|+..++ ...+++........ .....|..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865543333344455666542 22344443222111 1233578999999
Q ss_pred eC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 100 v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
|+ |+++++++|+++|+++..++.....|... ++++||||+.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 58999999999999988766544444333 67999999999983
No 22
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.80 E-value=3.9e-18 Score=121.00 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=83.7
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
+++|+|+.|.|+|++++++||+++|||++..... .+ .+++..........+.+... ...+..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6799999999999999999999999999876532 11 34454322222223333211 234688999999
Q ss_pred C---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 101 ~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
+ |++++.++|+++|+++...+.....+.+..++|.||||+.||+++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999987654433333334589999999999998753
No 23
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.80 E-value=5.4e-18 Score=123.11 Aligned_cols=118 Identities=21% Similarity=0.374 Sum_probs=86.9
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~ 99 (240)
++.+|+|+.|.|+|++++++||+++|||++..+.. ..+++..+. . .+.+......+....+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g--~--~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG--L--WIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC--e--EEEeeccCCCCCccCCCCeeEEEEE
Confidence 46789999999999999999999999999876532 245555432 2 2333322221111223467899999
Q ss_pred eC--cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 100 TE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 100 v~--dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
++ |+++++++|+++|+++..++....++. ..++|.||||++|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~-~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDK-KSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCc-eEEEEECCCCCEEEEEeCC
Confidence 98 999999999999999876655554444 4489999999999999764
No 24
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=2.4e-18 Score=126.87 Aligned_cols=119 Identities=27% Similarity=0.360 Sum_probs=86.9
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecC-CCceeeEEeecCCCcc---eeEEEEEeccCCccccCCCCceeEEE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQS---HFVVELTYNYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~g~~~~---~~~l~l~~~~~~~~~~~~~g~~~i~~ 98 (240)
+|+||+|.|+|++++++||+++||+++..+...+ ..+...+++..+.... +..+.+.. ..+.|+.||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987654433 2334566776543210 00011111 12468999999
Q ss_pred EeCcHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 99 ATEDVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 99 ~v~dl~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
.|+|++++. ++|+++|+++..++.....+...++|+.||+|+.|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 99999999987766555545555689999999999999664
No 25
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.79 E-value=9e-18 Score=124.97 Aligned_cols=126 Identities=30% Similarity=0.355 Sum_probs=85.5
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEE----ec--------------CCCceeeEEeecCCCcceeEEEEEecc
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR----DV--------------PEEKYSNAFLGFGPEQSHFVVELTYNY 82 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~l~l~~~~ 82 (240)
..+|+||+|.|+|+++|++||+++|||++..+. .. .......+++..++ ...+++.+..
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 357999999999999999999999999885321 00 00124455665443 2225555433
Q ss_pred CCc-cc----cCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCC-ccC-CC-CceEEEEEECCCCCEEEEEEcCC
Q 026313 83 GVT-SY----DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPL-KG-GTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 83 ~~~-~~----~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
... +. ..+.|+.|+||.|+|++++.++|+++|+++..++ ... ++ .....++++||||+.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 211 11 1246899999999999999999999998754322 111 11 12245899999999999998753
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.79 E-value=9.2e-18 Score=121.11 Aligned_cols=118 Identities=23% Similarity=0.286 Sum_probs=86.1
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~ 101 (240)
++|+||.|.|+|++++++||+++|||++..+... ..+|+..+....+..+.+..... ...|+.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 5799999999999999999999999998765321 24566654222233344433211 1358999999999
Q ss_pred cHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 102 dl~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
|++++. ++|+++|+++...+...+.+...++||+||+|+.|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 877665 699999998776555444444555899999999999997543
No 27
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.78 E-value=2.1e-17 Score=117.09 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=83.0
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~ 98 (240)
|.+++|+|+.|.|+|++++.+||+++||+++..+.. ..+++..........+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 578999999999999999999999999999887632 145555432222223333322 2347899999
Q ss_pred EeC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 99 ~v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
.|+ |++++.++|+++|+++...+..... +..++|+||||+.+|+...
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEe
Confidence 997 5889999999999986433222222 2348999999999999864
No 28
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.77 E-value=2.6e-17 Score=122.92 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=88.1
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~ 98 (240)
|.|.+|+|+.|.|+|++++++||+++|||++..+...+.......|+........ +.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHD--VAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCcee--EEEecCCC----CCCCCceEEEE
Confidence 6789999999999999999999999999998766433322233456654332222 32222111 12236899999
Q ss_pred EeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 99 ~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
.|+| +++++++|+++|+++...+.....+...++|+.||+|++||+++..
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9985 5688899999999986655544433334588999999999999873
No 29
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.76 E-value=4e-17 Score=120.50 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=88.5
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecC---CCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i 96 (240)
..++|+||.|.|+|++++++||+++|||++..+...+ ......+++..+.... .+.+... ..+.++.||
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEEE
Confidence 5678999999999999999999999999987653321 1133466666543222 2333222 123579999
Q ss_pred EEEeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 97 AIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 97 ~~~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
+|.|+| ++++.++|+++|+++..++...+.+....+|++||+|+.|||.....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999986 45689999999999877665555444556999999999999987643
No 30
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=7.2e-18 Score=120.07 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=83.4
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEec--CCCceeeEEeecCCCcceeEEEEEeccCCccccC---CCCceeEE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV--PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI---GTGFGHFA 97 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~---~~g~~~i~ 97 (240)
+|+||+|.|+|++++.+||+++|||+++..... ........++..+.. .+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999988662 222334444554433 33333332222111111 01345556
Q ss_pred EEe---CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 026313 98 IAT---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (240)
Q Consensus 98 ~~v---~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 144 (240)
+.+ +|++++.++|++.|+++..++.....+...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 57899999999999999888776666666656799999999997
No 31
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.76 E-value=8.1e-18 Score=120.16 Aligned_cols=119 Identities=30% Similarity=0.520 Sum_probs=84.8
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC-Cc---cc--cCCCCceeE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-VT---SY--DIGTGFGHF 96 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-~~---~~--~~~~g~~~i 96 (240)
+|+|+.|.|+|++++++||+++|||++......+..+...+++..+.. .+++..... .. .+ ..+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNT----KVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCE----EEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 589999999999999999999999998765433333445566655432 233333211 11 11 124578899
Q ss_pred EEEeCcHHHHHHHHHHcCCeeecC-CccCCCCceEEEEE--ECCCCCEEEEEE
Q 026313 97 AIATEDVYKLVENIRAKGGNVTRE-PGPLKGGTTHIAFV--KDPDGYIFELIQ 146 (240)
Q Consensus 97 ~~~v~dl~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~DPdG~~iel~~ 146 (240)
+|.|+|+++++++|+++|+++..+ +....+|.. ..++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998764 444445433 3566 799999999975
No 32
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.75 E-value=5.3e-17 Score=114.94 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=82.5
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~ 99 (240)
+++++.|+.|.|+|++++++||+++|||++..... ..+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 36799999999999999999999999999875422 134454222122222333221 12478899999
Q ss_pred e---CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 100 T---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 100 v---~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
| +|+++++++|+++|+++...|.....+....+++.||+|++||++..
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 9 47999999999999988665433333333458999999999999865
No 33
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=3.7e-17 Score=116.37 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=83.0
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~ 99 (240)
.+.+|.||.|.|+|++++.+||+++|||++..+.. ..+|+..+.. +..+.+.... ++..+++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 57899999999999999999999999999875422 2466665432 2223343211 356789999
Q ss_pred eCc---HHHHHHHHHHcCCeeecCCccC--CCCceEEEEEECCCCCEEEEEEcC
Q 026313 100 TED---VYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 100 v~d---l~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|+| ++++.++|+++|+++...+... ..+...+++|+|||||.||+....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 9999999999999876644321 122334578999999999998654
No 34
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=6.4e-17 Score=114.79 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=84.4
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC---CccccCCCCceeEE
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGHFA 97 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~---~~~~~~~~g~~~i~ 97 (240)
|++|+|+.|.|+|++++++||+++|||++....... ...++..+. . .+.+..... ......+.|..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEE
Confidence 468999999999999999999999999987654311 133444433 2 234333211 11223446789999
Q ss_pred EEeCc-HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEEE
Q 026313 98 IATED-VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 98 ~~v~d-l~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DPdG~~iel~~ 146 (240)
|.+++ +++++++|+++|+++...+....+ +....++|.||+|+++|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998766654322 22345899999999999976
No 35
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.75 E-value=6e-17 Score=116.38 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=80.7
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCc-
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED- 102 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~d- 102 (240)
|+||.|.|+|++++++||+++|||++..... ..+++..+. . .+.+......+......++.||+|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999875422 134454432 2 2333322221111223468899999974
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 103 -l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
+++++++|+++|+++..++....++. ..++|.||+|++||+.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~-~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDR-KSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcc-eEEEEECCCCCEEEEecCc
Confidence 99999999999998765544333333 3499999999999998764
No 36
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=7.4e-17 Score=114.09 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=79.9
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEe----ccCCccccCCCCceeEEE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY----NYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~----~~~~~~~~~~~g~~~i~~ 98 (240)
++.|+.|.|+|++++++||+++|||++..+.. . ...+..+ +.+.+.. .........+.+..+++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFEGG-----FALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEecc-----ceeccchhhhccCCcccccccCCceEEEE
Confidence 78999999999999999999999999864321 1 1111111 1111100 001111122345679999
Q ss_pred EeCcHHHHHHHHHHcCC-eeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 99 ATEDVYKLVENIRAKGG-NVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 99 ~v~dl~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
.|+|+++++++|+++|+ ++..++...++|.+. ++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 99999999999999986 677777777777554 8999999999999875
No 37
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.74 E-value=1.2e-16 Score=111.91 Aligned_cols=114 Identities=24% Similarity=0.246 Sum_probs=82.2
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcH
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl 103 (240)
+.|+.|.|+|++++++||+++||+++..... +.. ..+++..++. . .+.+....... ....+..+++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG-A--VGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc-c--EEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 5799999999999999999999999876542 111 2344544421 1 12222111111 1234567899999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
++++++|.++|+++..++...+++. ..+++.||+|+.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVG-RFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcE-EEEEEECCCCCEEEeEC
Confidence 9999999999999888877666444 45999999999999975
No 38
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.74 E-value=1.3e-16 Score=118.01 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=82.6
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc-ccCCCCceeEEEEeC
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATE 101 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~~i~~~v~ 101 (240)
+|+||.|.|+|++++.+||+++|||++..+.. . ...++..+. ..+..+.+........ .....++.||+|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999986643 1 233333321 2233455554322111 123346889999999
Q ss_pred c---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 102 d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
| +++++++|+++|+.+.. +... +....+||+||+|+.||+++..
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECC
Confidence 8 99999999999997543 2222 2334589999999999999874
No 39
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.74 E-value=1.9e-16 Score=113.76 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=81.9
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCc-eeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~ 98 (240)
++.+|+|+.|.|+|++++++||+++||+++..+....... ....++..+. ..+.+...... ...++.|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 3678999999999999999999999999876653221100 0011222221 12333322111 1236899999
Q ss_pred EeC--cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 99 ATE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 99 ~v~--dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
.|+ |++++.++|+++|+++..+. ....+.+..+||+||||+.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 998 79999999999999876432 23333344599999999999998653
No 40
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.74 E-value=1.8e-16 Score=117.94 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=80.5
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~ 101 (240)
++|+||.|.|+|++++++||+++|||++......+.......++..+... ..+.+... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~--~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGV--HDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCc--ceEEEecC-------CCCceeEEEEEcC
Confidence 57999999999999999999999999987554322222234455433221 12332211 2357899999998
Q ss_pred c---HHHHHHHHHHcCCee--ecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 102 D---VYKLVENIRAKGGNV--TREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 102 d---l~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
| +++++++|+++|+.. ...+.....+...++||+||+|+.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 5 788899999999863 2233322222334589999999999998654
No 41
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1.4e-16 Score=111.92 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=82.7
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCc--cccCCCCceeEEEEeCcH
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~--~~~~~~g~~~i~~~v~dl 103 (240)
||.|.|+|++++.+||+++|||++..+.... .+...+.+..... ..+.+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-GGFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-CCcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 8999999999999999999999998765421 2223333332211 13344444332221 112345788999999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+++.++|+++|+++..++....++ ..+++.||+|++|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999988777443333 45899999999999975
No 42
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=1.5e-16 Score=115.53 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=84.0
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCc--
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (240)
.||.|.|+|++++.+||+++|||++..+... ..+|+.......+..+.+... ...++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 4899999999999999999999998866421 356776443222333333211 23589999999975
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 103 -VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 103 -l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
+++++++|+++|+++...|.....+...++||+||+|+.||+.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 56789999999999877666555445556899999999999987653
No 43
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.73 E-value=1.6e-16 Score=115.85 Aligned_cols=113 Identities=20% Similarity=0.412 Sum_probs=83.0
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~ 101 (240)
.+|+|+.|.|+|++++++||+++|||++..... . ...|+..+.... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 379999999999999999999999999865422 1 245666554322 2333221 1247889999999
Q ss_pred cHHHHH---HHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 102 dl~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|++++. ++|+++|+++..++.....+...++||.||+|+.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 877764 89999999987655443333344588999999999999875
No 44
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.73 E-value=1.2e-16 Score=113.13 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=81.8
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~ 101 (240)
++|.||.|.|+|+++|++||+++|||++..+.. . ..+++..+.. ++.+.+.... ..+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEEC
Confidence 478999999999999999999999999865421 1 2455654332 3334443221 246789999996
Q ss_pred ---cHHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCCEEEEEEcC
Q 026313 102 ---DVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 102 ---dl~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|++++.++|+++|+++...+.. ...+....++|+||||+.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 5999999999999998764421 1223334589999999999998754
No 45
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.73 E-value=2.7e-16 Score=112.99 Aligned_cols=116 Identities=26% Similarity=0.380 Sum_probs=85.4
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcH-
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV- 103 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl- 103 (240)
+||.|.|+|++++++||+++||+++......+ .....+++..+.... .+.+.... ...++.|++|.|+|+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHH--DLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcc--eEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987664432 223456666543222 23333221 145789999999976
Q ss_pred --HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 104 --YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
++++++|+++|+++..++...+.+....++|.||+|++|||++...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 4788999999999887665555444455899999999999997653
No 46
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=4.3e-16 Score=110.79 Aligned_cols=117 Identities=26% Similarity=0.411 Sum_probs=84.6
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC-ccccCCCCceeEEEEe
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIAT 100 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~~~g~~~i~~~v 100 (240)
++|+||.|.|+|++++++||+++|||++..... ..+++..+. ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 479999999999999999999999999987632 245565443 2333444443222 1223445789999999
Q ss_pred C---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 101 ~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
+ ++++++++|.++|+++..+. ... ....+|+.||+|+++|+....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~~-~~~--~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGAS-DHL--VSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceeccc-ccc--ceeEEEEECCCCCEEEEEEecC
Confidence 7 49999999999999875432 222 2344899999999999987654
No 47
>PLN02300 lactoylglutathione lyase
Probab=99.73 E-value=3e-16 Score=127.40 Aligned_cols=129 Identities=52% Similarity=0.890 Sum_probs=99.4
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
..++.|+.|.|+|++++.+||+++|||++......+..++..+++..+.......+++..+.+...+..+++.+|++|.|
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v 231 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGT 231 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEec
Confidence 45789999999999999999999999999865444444566666655333233345554443333344567899999999
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
+|+++++++++++|+++..+|...++..+..++|.||+|+.++|++..+
T Consensus 232 ~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 232 DDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred CCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 9999999999999999998887777644455889999999999998754
No 48
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.72 E-value=5.8e-16 Score=109.75 Aligned_cols=117 Identities=23% Similarity=0.286 Sum_probs=83.1
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc--ccCCCCceeEEEEeCcHH
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS--YDIGTGFGHFAIATEDVY 104 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~~~g~~~i~~~v~dl~ 104 (240)
..|.|+|++++++||+++||+++......+.+....+.+..+. ..+.+.......... .....+..+++|.|+|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 5789999999999999999999987653333333344455442 222222111111110 123346778999999999
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+++++|.++|+++..++...++|... ++++||||++|+|.+
T Consensus 81 ~~~~~l~~~G~~v~~~~~~~~~g~~~-~~~~DPdG~~~~l~~ 121 (122)
T cd08355 81 AHYERARAAGAEILREPTDTPYGSRE-FTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHCCCEEeeCccccCCCcEE-EEEECCCCCEEEEec
Confidence 99999999999999888777777554 889999999999964
No 49
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.72 E-value=4.5e-16 Score=109.32 Aligned_cols=111 Identities=26% Similarity=0.428 Sum_probs=84.4
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~ 101 (240)
++|+|+.|.|+|++++++||+++|||++..+.. ..+++..+. ..++.+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 479999999999999999999999999987642 246666542 12233333322 1246889999997
Q ss_pred ---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 102 ---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+++++.++|+++|+++...+...+++.. .+++.||+|+.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEc
Confidence 6899999999999998877654444444 48999999999999865
No 50
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=3.3e-16 Score=111.31 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=81.2
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCC-ceeeEEeecCCCcceeEEEEEeccCCcc--ccCCCCceeEEEE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVTS--YDIGTGFGHFAIA 99 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~~~g~~~i~~~ 99 (240)
+|+||.|.|.|++++++||+++|||++..+...... .....++..........+.+........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998876543221 1223334322111222355543322211 1223467899999
Q ss_pred eC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 100 v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
|+ ++++++++++++|+++..++. . ++ ...++|+||+|++||++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~-~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H-FG-ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e-cc-eEEEEEECCCCCEEEeC
Confidence 98 579999999999998765432 2 33 34589999999999984
No 51
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=5.4e-16 Score=110.14 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=80.2
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
..+++|+.|.|+|++++++||+++|||++..... . .+++..++ ...+.+.... ...+..|++|.|
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC---CcEEEEecCC------CCCCcceEEEEe
Confidence 4689999999999999999999999999875321 1 23333332 1234443321 112467899988
Q ss_pred C--cHHHHHHHHHHcCCeeecCCccC-------CCCceEEEEEECCCCCEEEEEEc
Q 026313 101 E--DVYKLVENIRAKGGNVTREPGPL-------KGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 101 ~--dl~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+ |+++++++|.++|+++...+... .+|. +.++|.||||+.||+++.
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~-~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGG-RGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCe-eEEEEECCCCCEEEEEec
Confidence 6 69999999999999987655433 2333 459999999999999986
No 52
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.71 E-value=6.8e-16 Score=107.99 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=80.1
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
|++|+|+.|.|+|+++|++||++ |||++..+.. ..+++..+... ...+.+... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTD-PFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCc-cEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999876532 13555543222 222222111 124788999999
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+|.+++.+.+++.|......+. .+++. ..++|.||+|+.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~-~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGG-KRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCc-eEEEEECCCCCEEEEEec
Confidence 9999999999999998765432 34433 358999999999999865
No 53
>PRK06724 hypothetical protein; Provisional
Probab=99.71 E-value=5.9e-16 Score=110.51 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=77.2
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhc---CCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i 96 (240)
+..+|+||.|.|+|+++|++||+++| |++...... + ..+ ... +.+...... .....|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~~g--~~~--l~l~~~~~~--~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-STG--ESE--IYFKEVDEE--IVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-eCC--Cee--EEEecCCcc--ccCCCCceeE
Confidence 46689999999999999999999966 666542111 1 101 111 111111110 1123478899
Q ss_pred EEEe---CcHHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEEEcC
Q 026313 97 AIAT---EDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 97 ~~~v---~dl~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DPdG~~iel~~~~ 148 (240)
||.| +|+++++++|+++|+++..+|...+. .+...++|.||||+.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 68999999999999998776654432 2334588999999999998764
No 54
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.71 E-value=6.1e-16 Score=109.23 Aligned_cols=113 Identities=25% Similarity=0.364 Sum_probs=82.2
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
+.+|+|+.|.|+|++++++||+++|||++..+.. ..+++..+.. ....+.+... ..++..|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999875432 1345553322 2223333211 123678999999
Q ss_pred ---CcHHHHHHHHHHcCCeeecCCcc--CCCCceEEEEEECCCCCEEEEEEcC
Q 026313 101 ---EDVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 101 ---~dl~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
++++++.++|+++|+++..++.. .+++ ...++|.||+|+.|+|+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 47999999999999998766532 2333 34589999999999998753
No 55
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.71 E-value=1.9e-16 Score=110.24 Aligned_cols=113 Identities=26% Similarity=0.350 Sum_probs=80.8
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc-ccCCCCceeEEEEeCc
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED 102 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~~i~~~v~d 102 (240)
|+|+.|.|+|++++++||+++||+++..+...+ ...+++..++. . .+.+........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~-~--~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG-P--QLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC-c--EEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999987553322 12456655443 1 233333222111 1233467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 144 (240)
+++++++++++|+++..++.. ..+.. .+++.||+|+.+|+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998776644 23333 48999999999986
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=4.9e-16 Score=109.60 Aligned_cols=111 Identities=22% Similarity=0.256 Sum_probs=79.1
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC--c---cccCCCCceeEEEEe
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--T---SYDIGTGFGHFAIAT 100 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~---~~~~~~g~~~i~~~v 100 (240)
++.|.|+|++++++||+++|||++..... ..+.+..+.. ...+.+...... . ....+.+ .+++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 57899999999999999999999876521 1334443322 233333322111 1 1112233 4899999
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+|+++++++|.++|+++..++...++|... ++++||+|++|+|+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 999999999999999988777766666444 889999999999985
No 57
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=1e-15 Score=109.38 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=83.2
Q ss_pred eeeEEEEEECCHHHHHHHhhhhc---CCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc---ccCCCCceeE
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHF 96 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~~~g~~~i 96 (240)
+|+||.|.|+|++++++||+++| ||++..+.. . ...|... . .+..+.+........ ...+.|+.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~-~--~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG-D--GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec-C--CceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999887642 1 1233322 1 223344444332211 1244578999
Q ss_pred EEEeC---cHHHHHHHHHHcCCeeecCCccC--CCCceEEEEEECCCCCEEEEEEc
Q 026313 97 AIATE---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 97 ~~~v~---dl~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+|.|+ |++++.++|+++|+.+...+... ..+....+++.||+|+++||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99997 58999999999999988766542 22334458999999999999853
No 58
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=4.1e-16 Score=111.18 Aligned_cols=119 Identities=29% Similarity=0.512 Sum_probs=84.2
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecC-CCceeeEEeecCCCcceeEEEEEeccCC-cc-----ccCCCCceeE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYGV-TS-----YDIGTGFGHF 96 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~-----~~~~~g~~~i 96 (240)
|+||.|.|+|++++.+||+++|||++....... ......+++..+ ...+.+..+... .. ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 589999999999999999999999997764432 233445666543 223444432211 11 1345789999
Q ss_pred EEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCC--CCEEEEEE
Q 026313 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPD--GYIFELIQ 146 (240)
Q Consensus 97 ~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPd--G~~iel~~ 146 (240)
+|.|+|+++++++++++|+++..++.....++..+.++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999998887653444444434444445 99999975
No 59
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=7.6e-16 Score=109.49 Aligned_cols=117 Identities=23% Similarity=0.337 Sum_probs=79.7
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEe---cc---CC--ccccCCCCcee
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY---NY---GV--TSYDIGTGFGH 95 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~---~~---~~--~~~~~~~g~~~ 95 (240)
+.|+.|.|+|++++.+||+++|||++..... ...+ ..+..+ ...+.+.... .. .. .......+..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999865422 1111 112222 1111111110 00 00 01111224468
Q ss_pred EEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 96 i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
++|.|+|++++++++.++|+++..++...++|... ++++||+|+.++++++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTV-AYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEE-EEEECCCCCEEEEecC
Confidence 99999999999999999999998888777777554 8899999999999863
No 60
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.70 E-value=1.2e-15 Score=107.89 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=84.3
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC--ccccCCCCceeEEEEeCcHH
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--TSYDIGTGFGHFAIATEDVY 104 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~~~~~~~g~~~i~~~v~dl~ 104 (240)
+.|.|+|++++.+||+++||+++......+.+....+.+..+.. . +.+...... .....+.+..+++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS--V--LMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE--E--EEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 56899999999999999999999876553444334444554432 2 333322111 01123346779999999999
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
++++++.+.|+++..++...++|... ++++||+|+.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDRY-GGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccceE-EEEECCCCCEEEEecC
Confidence 99999999999998888766776544 8999999999999863
No 61
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.69 E-value=3.2e-15 Score=107.72 Aligned_cols=119 Identities=25% Similarity=0.434 Sum_probs=82.4
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCc
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~d 102 (240)
+|+|+.|.|+|++++++||+++|||++...... ....++..+.. ....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765431 12455554311 1223444333222111234578899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 103 VY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 103 l~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
++ +++++|.++|+++..... .++ ...+++.||+|++||+++..+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~--~~~-~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD--HGN-AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC--CCc-eeEEEEECCCCCEEEEEEcCC
Confidence 54 688999999998766432 222 345899999999999997754
No 62
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.68 E-value=1.3e-15 Score=105.39 Aligned_cols=108 Identities=23% Similarity=0.312 Sum_probs=75.8
Q ss_pred EEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHHHHH
Q 026313 29 YRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE 108 (240)
Q Consensus 29 l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~~~~ 108 (240)
|.|+|++++++||+++|||++..... . .+.+..+.....-...+..... ......+..+++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP--D----YVDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET--S----EEEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC--C----eEEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988433 1 3334333211111122222111 22234578999999999999999
Q ss_pred HHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 109 NIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
+++++|+++..++...++|.. .+++.||+|+.|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999998888777777644 499999999999986
No 63
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=2e-15 Score=123.63 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=84.9
Q ss_pred CcCCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCce-eeEEeecCCCcceeEEEEEeccCCccccCCCC-ce
Q 026313 17 PKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG-FG 94 (240)
Q Consensus 17 ~~~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g-~~ 94 (240)
..+.+++|+||.|.|+|++++++||+++|||++..+...+.+.. ...|+..+... + .+.+... .+.| +.
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-------~~~g~~~ 209 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKA-H-DIAFVGD-------PEPGKLH 209 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCC-c-ccceecC-------CCCCceE
Confidence 34568899999999999999999999999999876543333222 34455443211 1 1211111 1234 89
Q ss_pred eEEEEeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 95 HFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 95 ~i~~~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
|+||.|+| ++++.++|+++|+++..+|.....+....+||.||+|+.||+..
T Consensus 210 Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 210 HVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99999986 56678899999999876665443333446999999999999983
No 64
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=1.8e-15 Score=107.17 Aligned_cols=109 Identities=29% Similarity=0.477 Sum_probs=78.4
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe--
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT-- 100 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v-- 100 (240)
+|+|+.|.|+|++++++||+++|||++..... . ..++..+. ..+.+.+... . ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~--~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDAN--V---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCC--C---CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999876532 1 24444432 2222222111 1 1234678999998
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
+|++++.++|.++|+++..++.. .+ ..++|.||||+.||+++..
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 22 3489999999999999764
No 65
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.67 E-value=1.9e-15 Score=105.47 Aligned_cols=109 Identities=22% Similarity=0.399 Sum_probs=76.3
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC--cH
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE--DV 103 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~--dl 103 (240)
|+.|.|+|++++++||+++||+++..+... ..++..+. ..+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 899999999999999999999998765321 33444331 123332221111 12346789999994 79
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+++++++.++|+++.........+ +..++++||+|++||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGE-GRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCC-ceEEEEECCCCCEEEEEeC
Confidence 999999999999976543222222 3448999999999999864
No 66
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.66 E-value=5.4e-15 Score=103.14 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=77.9
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHHH
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~~ 106 (240)
..|.|+|++++++||+++|||++.... + ..+++..+.. .+..+.+..... .+.+..|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 568899999999999999999986431 1 2333433221 223344332211 112456899999999999
Q ss_pred HHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 107 VENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 107 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+++|++.|+++..++....+|... +++.||+|+.|++++.
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 999999999988877666666444 8999999999999875
No 67
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.66 E-value=5.4e-15 Score=120.59 Aligned_cols=122 Identities=25% Similarity=0.363 Sum_probs=85.4
Q ss_pred cCCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEE
Q 026313 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (240)
Q Consensus 18 ~~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~ 97 (240)
.+.+++|+||+|.|+|++++++||+++|||++..+...+.+.....++..+.. .+ .+.+.. ..+.++.|+|
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-------~~~~~~~Hia 201 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-VH-DIALTN-------GNGPRLHHIA 201 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-cC-ceEeec-------CCCCceeeEE
Confidence 35678999999999999999999999999998766433333333445543221 11 222221 1235899999
Q ss_pred EEeCc---HHHHHHHHHHcCCe--eecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 98 IATED---VYKLVENIRAKGGN--VTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 98 ~~v~d---l~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|.|+| ++++.++|+++|++ +...|.....+...++|++||+|++||++...
T Consensus 202 f~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 202 YWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 99998 55678999999987 54444433333344589999999999998754
No 68
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=6.3e-15 Score=104.23 Aligned_cols=113 Identities=28% Similarity=0.455 Sum_probs=79.4
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCc------cccCCCCceeEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT------SYDIGTGFGHFA 97 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~------~~~~~~g~~~i~ 97 (240)
|.|+.|.|+|++++++||+++|||++..+. .+ ..+++..++. .. +.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-GM--LLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-cE--EEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 11 2455665543 22 2222211110 111234788999
Q ss_pred EEe--CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 98 IAT--EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 98 ~~v--~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
|.+ +|++++++++.++|+++...+. ..++. ..+++.||+|++||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~-~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGG-RSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCe-eEEEEECCCCCEEEEec
Confidence 998 4799999999999998866543 23333 34899999999999986
No 69
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=8.1e-15 Score=103.97 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=77.7
Q ss_pred eeEEEEEECCHHHHHHHhhhh---cCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe
Q 026313 24 FLHAVYRVGDLDRTIKFYTEC---FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~---lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v 100 (240)
|+|+.|.|+|++++++||+++ ||+++..+.. . ..+.+..+..... +.+........ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPD--FWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCce--EEEeccccCCC-CCCCCceEEEEEC
Confidence 589999999999999999998 6999875531 1 1233332222222 33333221111 1223457999999
Q ss_pred Cc---HHHHHHHHHHcCCeeecCCccCCC--CceEEEEEECCCCCEEEEE
Q 026313 101 ED---VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 101 ~d---l~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~DPdG~~iel~ 145 (240)
+| ++++.+++.++|+.+..++...++ .....++|+||+|+.||++
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998777665543 2333589999999999986
No 70
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=1.3e-14 Score=102.53 Aligned_cols=111 Identities=25% Similarity=0.431 Sum_probs=77.3
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCc--
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (240)
.|+.|.|+|++++.+||+++||++...+.. . ...|. .+.. .+.+.+...... ...+..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~~-~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKFL-LEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEEE-ecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999999765421 1 12222 2222 222333322111 11478899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCccCC-CCceEEEEEECCCCCEEEEEEc
Q 026313 103 -VYKLVENIRAKGGNVTREPGPLK-GGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 103 -l~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+++++++|.++|+++..++.... .+....++++||+|+.|||+..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 88899999999999876554332 2223458999999999999874
No 71
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.64 E-value=1.2e-14 Score=100.24 Aligned_cols=112 Identities=31% Similarity=0.450 Sum_probs=81.8
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHH
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~ 105 (240)
|+.+.|+|++++.+||+++||+++...... .....+++..+ ...+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998877542 12245555543 233455443322211345678999999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 026313 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (240)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 144 (240)
+.++|.++|+.+..++....++. ..+++.||+|+.|++
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGG-RVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCc-EEEEEECCCCcEEeC
Confidence 99999999998877665333333 449999999999985
No 72
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=1.3e-14 Score=101.22 Aligned_cols=108 Identities=19% Similarity=0.338 Sum_probs=73.0
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEE--EE
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFA--IA 99 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~--~~ 99 (240)
.+|+||.|.|+|++++++||+ .|||++..+.. ...+...+.. +..+.+.... ..+..+++ +.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeE
Confidence 368999999999999999997 69999875421 1222222222 2223332211 22344444 45
Q ss_pred eCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 100 v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
++|++++.++|+++|+++..++ ..++... ++|.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~~-~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPDG-VWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCCE-EEEECCCCCEEEEecCC
Confidence 5899999999999999987654 2333333 89999999999998654
No 73
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.63 E-value=1.2e-14 Score=103.00 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=76.2
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC-----CccccCCCCceeEEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-----VTSYDIGTGFGHFAI 98 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~~~~~g~~~i~~ 98 (240)
++||.|.|+|+++|++||+. |||++...... ...+.+..+. ... +.+..... ......+.+..+++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~~~--l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-GVR--LAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-CEE--EEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99997543221 1123333321 122 22221100 000012234567888
Q ss_pred EeC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 99 ~v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
.++ |+++++++|+++|+++..++...++|... ++++||+||.|+|+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRY-AIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEE-EEEECCCCCEEEEe
Confidence 765 89999999999999988877777776544 89999999999986
No 74
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.63 E-value=2.6e-14 Score=99.47 Aligned_cols=110 Identities=27% Similarity=0.401 Sum_probs=78.1
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHHH
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~~ 106 (240)
..|.|+|++++++||+++|||++..... .. ..+++..+ .. .+.+......... ...+..+++|.|+|++++
T Consensus 2 ~~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~~--~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 2 PVLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--GA--QLMLSEHDGDEPV-PLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred CEEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--CE--EEEEeccCCCCCC-CCCCcEEEEEEeCCHHHH
Confidence 3689999999999999999999876643 11 23444433 22 2334333221111 234666899999999999
Q ss_pred HHHHHHcCCe-eecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 107 VENIRAKGGN-VTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 107 ~~~l~~~G~~-~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
.++++++|+. +..++....++.. .+++.||+|+.|+++|
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 9999999998 5666655555544 4889999999999975
No 75
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.63 E-value=3.1e-14 Score=99.20 Aligned_cols=121 Identities=25% Similarity=0.300 Sum_probs=88.0
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCC-CcceeEEEEEeccCCccccCCCCceeEE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP-EQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~l~l~~~~~~~~~~~~~g~~~i~ 97 (240)
++...+.|..|.++|++++++||.++|||+....... +..+.+.+..+. ..... +. . .....++.+...+.
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~--~~~~y~~f~~~~~~~gG~-l~--~---~~~~~p~~~~~~iy 76 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDM--GEMRYAVFPADGAGAGGG-LM--A---RPGSPPGGGGWVIY 76 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccC--CCceEEEEECCCccccce-ec--c---CCcCCCCCCCEEEE
Confidence 3456789999999999999999999999998765332 223344443332 11111 11 1 11122324567788
Q ss_pred EEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 98 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|.|+|+++..+|.+++|.+++.++...++++. ++.+.||+||+|.|++..
T Consensus 77 ~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~-~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 77 FAVDDIDATLERVVAAGGKVLRPKTEFPGGGR-IAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred EecCChHHHHHHHHhcCCeEEecccccCCceE-EEEEECCCCCEEEEeecC
Confidence 99999999999999999999999888886544 499999999999999753
No 76
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=1.6e-14 Score=102.61 Aligned_cols=113 Identities=26% Similarity=0.357 Sum_probs=73.1
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC---c-c-ccCCCCceeEE--E
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV---T-S-YDIGTGFGHFA--I 98 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~---~-~-~~~~~g~~~i~--~ 98 (240)
||.|.|+|++++++||+++|||++..... ..+.+..+. ..+.+.+...... . . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999865321 122232221 2233333221100 0 0 01112355665 4
Q ss_pred EeCcHHHHHHHHHHcCCeeecCCccCC---CCceEEEEEECCCCCEEEEEE
Q 026313 99 ATEDVYKLVENIRAKGGNVTREPGPLK---GGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 99 ~v~dl~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~DPdG~~iel~~ 146 (240)
.++|+++++++|+++|+++..+|.... .+....++|.||||+.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 668999999999999999887665322 122345899999999999964
No 77
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.62 E-value=2.4e-14 Score=116.40 Aligned_cols=119 Identities=21% Similarity=0.346 Sum_probs=83.7
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCC-c--eeeEEeecCCCcceeEEEEEeccCCccccCCCCceeE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-K--YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~-~--~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i 96 (240)
.+.+|+||.|.|+|++++.+||+++|||++..+...+.. + +..+++..+.... .+.+... ....++.|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEE
Confidence 367999999999999999999999999998765322111 1 2355665543222 2322211 123579999
Q ss_pred EEEeCcHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 97 AIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 97 ~~~v~dl~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+|.|+|+++ +.++|+++|+ ....+.....+...++|++||+|++||+...
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 999987666 8999999999 4444444443445568999999999999764
No 78
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.9e-14 Score=102.23 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=75.5
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCC-----cc--ccCCCCceeEE
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-----TS--YDIGTGFGHFA 97 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-----~~--~~~~~g~~~i~ 97 (240)
.++.|.|+|+++|++||++ |||+...+...+. .+++..+. . ..+.+...... .. ...+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD-N--IFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC-c--eEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 6899999999999999987 9999764322211 23333332 1 22333321100 00 01233467899
Q ss_pred EEeC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 98 IATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 98 ~~v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
|.|+ |+++++++++++|+++..+|...+++ ..++|+|||||+||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~--~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGFM--YGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCce--EEEEEECCCCCEEEEEE
Confidence 9997 58899999999999988777665543 33899999999999974
No 79
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.61 E-value=3.1e-14 Score=100.61 Aligned_cols=108 Identities=22% Similarity=0.211 Sum_probs=74.6
Q ss_pred EEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHH
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~ 105 (240)
...|.|+|++++++||++ |||++..+... ..+++..++ . .+.+....... ......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~--~--~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGD--L--ELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCC--E--EEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 467999999999999999 99998765331 234444332 2 33443322111 11234578999999999
Q ss_pred HHHHHHHcCCeee-------cCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 106 LVENIRAKGGNVT-------REPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
++++|+++|+++. .++...++|... ++|+||||+.|+|.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~-~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMRE-FALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeE-EEEECCCCCEEEeecC
Confidence 9999999999742 233334455444 8999999999999874
No 80
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.2e-14 Score=99.52 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=77.3
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc-ccCCCCceeEEEEeCc---
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED--- 102 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~~i~~~v~d--- 102 (240)
+.|.|+|++++++||+++||+++..... . .+.+..++ .. .+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----T--FALFVLGS-GV--KLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----c--eEEEEeCC-Cc--EEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765321 1 23333322 12 234443322211 1233467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
++++++++.++|+++..++...++|. .++|+|||||.||++
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88999999999999988877776663 388999999999986
No 81
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.58 E-value=2.7e-14 Score=99.22 Aligned_cols=95 Identities=25% Similarity=0.305 Sum_probs=75.5
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc--ccCCCCceeEEEEeCc
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS--YDIGTGFGHFAIATED 102 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~~~g~~~i~~~v~d 102 (240)
+||+|.|+|++++++||+++||+++......+....+.+++..+... ..++|.++..... ...+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666667777787776543 4567666543332 2377899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 026313 103 VYKLVENIRAKGGNVTREP 121 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~ 121 (240)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999977653
No 82
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.6e-13 Score=95.96 Aligned_cols=104 Identities=20% Similarity=0.275 Sum_probs=71.8
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHHHH
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~~~ 106 (240)
..|.|+|++++++||++ |||++..+.. ..+++..+. ..+.+ ...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~~l~l--~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--CAFYL--QDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--EEEEe--ecCCCc----ccccCCEEEEEECCHHHH
Confidence 56889999999999988 9999986532 245565542 22222 221111 112335789999999999
Q ss_pred HHHHHHcCCeee-----cCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 107 VENIRAKGGNVT-----REPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+++|+++|+++. .++....+|.. .++|+|||||++++.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 999999998642 23334455554 4999999999999864
No 83
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=2.9e-13 Score=95.42 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=74.7
Q ss_pred EEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccC------CccccCCCCceeEEEEe
Q 026313 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG------VTSYDIGTGFGHFAIAT 100 (240)
Q Consensus 27 i~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~------~~~~~~~~g~~~i~~~v 100 (240)
|.|.|+|++++.+||+++|||++..+.. . ...++..+. ..+.+..... ......+.+..+++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~---~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN---D--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC---C--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 7899999999999999999999876511 1 234554432 2233332111 11111222344566655
Q ss_pred ---CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 101 ---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 101 ---~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
+|++++++++++.|+++..++...++|.. .+++.||+|++||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGY-SGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCce-EEEEECCCCCEEEEee
Confidence 58999999999999998877766666544 4899999999999974
No 84
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.52 E-value=3.7e-13 Score=107.35 Aligned_cols=205 Identities=16% Similarity=0.193 Sum_probs=127.4
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccc--cCCCCceeEE
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHFA 97 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~--~~~~g~~~i~ 97 (240)
...++.+|.+.|.|.+++..-|-..|||+...+-... ....++-| ...+++.-........+ .+|++...++
T Consensus 19 ~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk----~v~l~rQG--dinlvvn~~~~s~a~~f~~~Hgps~~a~a 92 (363)
T COG3185 19 GTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK----AVTLYRQG--DINLVVNAEPDSFAAEFLDKHGPSACAMA 92 (363)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc----ceeEEEeC--CEEEEEcCCCcchhhHHHHhcCCchheeE
Confidence 3789999999999995444444455999987653221 12222222 44444432222211222 4888999999
Q ss_pred EEeCcHHHHHHHHHHcCCeeecCCcc-----CC---CCceEEEEEECCCC-CE-----EEEE--EcCCCC---CCceeEE
Q 026313 98 IATEDVYKLVENIRAKGGNVTREPGP-----LK---GGTTHIAFVKDPDG-YI-----FELI--QRGPTP---EPLCQVM 158 (240)
Q Consensus 98 ~~v~dl~~~~~~l~~~G~~~~~~~~~-----~~---~g~~~~~~~~DPdG-~~-----iel~--~~~~~~---~~~~hv~ 158 (240)
|+|+|...+.++..+.|.+....+.. .+ +-++..+||.|..| .. ++.. +..+.. ..++|++
T Consensus 93 ~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl~ 172 (363)
T COG3185 93 FRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHLT 172 (363)
T ss_pred EeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechhh
Confidence 99999999999999999954333221 11 12233488888873 21 2222 011111 3689998
Q ss_pred EEe--cCccccHHHHHHhcCCeeeeeecCCCc---ceeEEEeccccCCceeEEEEEEecCCc--c-------cccCccee
Q 026313 159 LRV--GDLGRSIKFYEKALGMKLLRTVDKPEY---KYTLAMLGYAEEDQTTVLELTYNYGVT--E-------YTKGNAYA 224 (240)
Q Consensus 159 l~~--~d~~~~~~fy~~~lG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~-------~~~g~g~~ 224 (240)
+++ ..++....||+++|||+.....+.++. -++.+....+. .+.++.|.... + ...|.|++
T Consensus 173 ~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G-----~vrlplN~s~~~~sqi~efl~~y~G~GIQ 247 (363)
T COG3185 173 HNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCG-----KVRLPLNESADDKSQIGEFLREYRGEGIQ 247 (363)
T ss_pred hhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCC-----cEEeecccCCCchhHHHHHHHHhCCCcce
Confidence 886 499999999999999999988765432 23333333222 24454443322 1 35677999
Q ss_pred EEEEcCCCccc
Q 026313 225 QVNTSPSGSIS 235 (240)
Q Consensus 225 Hiaf~v~di~~ 235 (240)
||||.++||..
T Consensus 248 HIA~~T~dI~~ 258 (363)
T COG3185 248 HIAFGTDDIYA 258 (363)
T ss_pred EEEecccHHHH
Confidence 99999999864
No 85
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.9e-13 Score=93.05 Aligned_cols=127 Identities=34% Similarity=0.513 Sum_probs=82.5
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCC---------------cceeEEEEEeccC
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPE---------------QSHFVVELTYNYG 83 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~---------------~~~~~l~l~~~~~ 83 (240)
+....+.|..+++.|+.++..||++++|+.+.......+..+...+++.... ..+-.+++..+.+
T Consensus 18 ~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~G 97 (170)
T KOG2944|consen 18 TPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWG 97 (170)
T ss_pred CchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCC
Confidence 3445568888889999999999998888887654433322222222211000 0111245554432
Q ss_pred C-----cccc----CCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 84 V-----TSYD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 84 ~-----~~~~----~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
. ..+. .+.|+.||||.|+|+++++++|+++|+++...+.+.. ...++|+.||||++||+...
T Consensus 98 tes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk--~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 98 TESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGK--MKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCcc--ccceeEEECCCCCeEEEeec
Confidence 2 1222 2248999999999999999999999999766543222 23469999999999999764
No 86
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.43 E-value=2e-12 Score=98.64 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=74.2
Q ss_pred cceeeEEEEEEC--CHHHHHHHhhhhcCCEEEEEEecCC--CceeeEEeecCCCcceeEEEEEeccC--Cc-------cc
Q 026313 21 KRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYG--VT-------SY 87 (240)
Q Consensus 21 i~~i~hi~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~--~~-------~~ 87 (240)
+++|+||++.|+ |++++++||+++|||++......++ .+.....+.... ..+.+++..+.. .. ..
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHH
Confidence 368999999999 9999999999999999887654433 234444554332 344556654332 11 11
Q ss_pred cCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCc
Q 026313 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (240)
Q Consensus 88 ~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~ 122 (240)
..+.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24789999999999999999999999999887664
No 87
>PLN02367 lactoylglutathione lyase
Probab=99.36 E-value=2.3e-12 Score=99.42 Aligned_cols=85 Identities=33% Similarity=0.637 Sum_probs=69.1
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCC---------------ceeEEEEEEecCCc--
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVT-- 215 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~-- 215 (240)
.+.|+.|.|.|++++.+||+++|||++..+.+.++++++++|+++++.. ....|||+++++..
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 5899999999999999999999999999988888888999999864411 13579998887644
Q ss_pred ----ccccCc----ceeEEEEcCCCccccc
Q 026313 216 ----EYTKGN----AYAQVNTSPSGSISNY 237 (240)
Q Consensus 216 ----~~~~g~----g~~Hiaf~v~di~~~~ 237 (240)
.++.|+ |++|+||.|+||...+
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~ 184 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKAC 184 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHH
Confidence 244443 8999999999987654
No 88
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.32 E-value=8.2e-12 Score=88.42 Aligned_cols=81 Identities=37% Similarity=0.703 Sum_probs=61.5
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCC-----------cceeEEEeccccCCceeEEEEEEecCCcccccCc
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 221 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 221 (240)
++.|+.+.|+|+++|.+||+++|||++.++...++ +.+..+++++++...+..||++++++..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999987775554 5556666765433446789999888766566666
Q ss_pred ceeEEEEcCCCc
Q 026313 222 AYAQVNTSPSGS 233 (240)
Q Consensus 222 g~~Hiaf~v~di 233 (240)
+..|+|+.|.|+
T Consensus 82 ~~~hlav~~~d~ 93 (127)
T cd08358 82 DFLGITIHSKQA 93 (127)
T ss_pred CEEEEEEECHHH
Confidence 766666666544
No 89
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.30 E-value=7.2e-11 Score=79.00 Aligned_cols=117 Identities=28% Similarity=0.320 Sum_probs=75.0
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCcc-cc-CCC--CceeEE-
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YD-IGT--GFGHFA- 97 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~-~~~--g~~~i~- 97 (240)
-+-|++|.|+|++++++||+++||.+.-.+.. ..+-+.+ -...++..+........ .+ .+. -..|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeee--cccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 36799999999999999999999998643322 1222221 11222333332211111 01 111 134444
Q ss_pred -EEeCcHHHHHHHHHHcCCeeecCCccCC---CCceEEEEEECCCCCEEEEEEc
Q 026313 98 -IATEDVYKLVENIRAKGGNVTREPGPLK---GGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 98 -~~v~dl~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+.++|+-++.+||+++|+....+|.... .|....+|+.||.||.+|+-..
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 5678999999999999998877766433 2445568999999999998654
No 90
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=2.1e-12 Score=97.41 Aligned_cols=86 Identities=37% Similarity=0.684 Sum_probs=78.8
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCC-----------cceeEEEeccccCCceeEEEEEEecCCccccc
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK 219 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 219 (240)
..++-|+++.+.|..++.+||+++|||++.+.-+.++ +.|+-.++++|+++.|+++|+++|++...+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 3578899999999999999999999999998877665 78999999999999999999999999999999
Q ss_pred CcceeEEEEcCCCcccc
Q 026313 220 GNAYAQVNTSPSGSISN 236 (240)
Q Consensus 220 g~g~~Hiaf~v~di~~~ 236 (240)
|+++.|++..++|+.++
T Consensus 95 Gndfg~i~I~s~dv~~~ 111 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSK 111 (299)
T ss_pred cCCcccEEEeHHHHHHH
Confidence 99999999999998654
No 91
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.27 E-value=4.5e-11 Score=99.86 Aligned_cols=103 Identities=21% Similarity=0.358 Sum_probs=74.3
Q ss_pred CcCCcceeeEEEEEEC--CHHHHHHHhhhhcCCEEEEEEecCC--CceeeEEeecCCCcceeEEEEEeccC---Cc----
Q 026313 17 PKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYG---VT---- 85 (240)
Q Consensus 17 ~~~~i~~i~hi~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~---~~---- 85 (240)
+.+.+.+|+||++.|+ |++++++||+++|||++..+..... .+.....+... ...+.+++..+.. ..
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~--~g~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP--DGKVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC--CCcEEEEEeccCCCCCCCHHHH
Confidence 4567899999999999 9999999999999999887654322 12222223221 2234566655311 11
Q ss_pred --cccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCC
Q 026313 86 --SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP 121 (240)
Q Consensus 86 --~~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~ 121 (240)
....|.|+.||||.|+|+++++++|+++|+++..+|
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 112478999999999999999999999999988765
No 92
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.24 E-value=2.7e-11 Score=91.42 Aligned_cols=85 Identities=31% Similarity=0.608 Sum_probs=65.0
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCC---------------ceeEEEEEEecCCcc
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGVTE 216 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~ 216 (240)
.++.|+.|.|.|++++.+||+++|||++..+...++.++.++|+++++.. ....|||..+++...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 46999999999999999999999999998887767777888888764311 134789987644221
Q ss_pred ------ccc----CcceeEEEEcCCCcccc
Q 026313 217 ------YTK----GNAYAQVNTSPSGSISN 236 (240)
Q Consensus 217 ------~~~----g~g~~Hiaf~v~di~~~ 236 (240)
+.. +.|++|+||.|+||...
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~ 135 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKA 135 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHH
Confidence 221 24899999999998654
No 93
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.18 E-value=6.9e-10 Score=83.62 Aligned_cols=147 Identities=25% Similarity=0.360 Sum_probs=84.0
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEecc---CCc--c-------ccCCC
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY---GVT--S-------YDIGT 91 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~---~~~--~-------~~~~~ 91 (240)
|+|+.+.|+|++++.++|++.|||++......+..+.....+.+++.. ||+.... ... . ...+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~Y----lEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGY----LELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSE----EEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCce----EEEEEeCCcccccccccceechhhcCCC
Confidence 799999999999999999888999999998887767788888876642 3333211 110 0 11467
Q ss_pred CceeEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCce--EEEEEECC----CCCEEEEEEcC-CCC---------CCce
Q 026313 92 GFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTT--HIAFVKDP----DGYIFELIQRG-PTP---------EPLC 155 (240)
Q Consensus 92 g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~~DP----dG~~iel~~~~-~~~---------~~~~ 155 (240)
|+..+|++++|+++..++|++.|+..... ....++.. ..+++.++ .+..-.+++.. +.+ ..+.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~r-~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGSR-VRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEEE-EEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCCc-CcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 89999999999999999999999762111 11111111 12445553 24444555322 221 3589
Q ss_pred eEEEEecCccccHHHHHHhc
Q 026313 156 QVMLRVGDLGRSIKFYEKAL 175 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~l 175 (240)
+|.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999998865
No 94
>PRK10291 glyoxalase I; Provisional
Probab=99.15 E-value=1.1e-10 Score=83.35 Aligned_cols=78 Identities=54% Similarity=0.946 Sum_probs=58.4
Q ss_pred EEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcccc
Q 026313 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 159 l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~ 236 (240)
|.|+|++++.+||+++|||++......++..+.++++.+++......++++.+.+......|.+++|+||.|+|+...
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~ 79 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEA 79 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHH
Confidence 679999999999999999998776555666677888877654334567776554433334566899999999998654
No 95
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.13 E-value=2.8e-10 Score=83.58 Aligned_cols=87 Identities=43% Similarity=0.755 Sum_probs=62.9
Q ss_pred CCCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEc
Q 026313 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTS 229 (240)
Q Consensus 150 ~~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~ 229 (240)
...++.|+.|.|+|++++.+||+++|||++..+...++..+..++++.+..+.+..+++..+++......+.|+.|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 34579999999999999999999999999876654445555666777654444456776544332222345689999999
Q ss_pred CCCcccc
Q 026313 230 PSGSISN 236 (240)
Q Consensus 230 v~di~~~ 236 (240)
|+|+...
T Consensus 94 v~dld~~ 100 (150)
T TIGR00068 94 VDDVYKA 100 (150)
T ss_pred cCCHHHH
Confidence 9998643
No 96
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.13 E-value=4.5e-09 Score=75.03 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred EEEEE-CCHHHHHHHhhhhcCCEEEEEEecC----------CCceeeEEeecCCCcceeEEEEEeccCCccccCCCCcee
Q 026313 27 AVYRV-GDLDRTIKFYTECFGMKLLRKRDVP----------EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (240)
Q Consensus 27 i~l~v-~d~~~a~~FY~~~lG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~ 95 (240)
..|.+ .|.+++++||+++||+++......+ .+....+.+..+.. . +.+......... .+.+-..
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~--~--l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ--R--LMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE--E--EEEEcCCCCCCC-CCCCCEE
Confidence 34666 8999999999999999998765321 12223444544432 2 222222111111 1223457
Q ss_pred EEEEeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 026313 96 FAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (240)
Q Consensus 96 i~~~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 144 (240)
+++.|+| +++++++|.+.| ++..++...++|... ..++||+|+.|+|
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 8888886 778889987766 777777777787655 8899999999987
No 97
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.07 E-value=8e-10 Score=78.44 Aligned_cols=122 Identities=22% Similarity=0.378 Sum_probs=72.6
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCce-eeEEeecCCC--cceeEEEE--------EeccCCccccCC
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPE--QSHFVVEL--------TYNYGVTSYDIG 90 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~g~~--~~~~~l~l--------~~~~~~~~~~~~ 90 (240)
++++|+.+.|+|++++++||+++||++............ ....+..... ........ ............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 468999999999999999999999999987654322211 0111111110 00000000 000000000111
Q ss_pred --CCceeEEEEeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 91 --TGFGHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 91 --~g~~~i~~~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
.+..++++.+++ ...........|..+..... ..++. .+|+.||||+.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 247889999988 66666777777887654433 32322 5999999999999864
No 98
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.06 E-value=1.6e-08 Score=71.83 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=83.7
Q ss_pred EEEEEC-CHHHHHHHhhhhcCCEEEEEEecCC----------CceeeEEeecCCCcceeEEEEEeccCCccccCCC-Cce
Q 026313 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDVPE----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT-GFG 94 (240)
Q Consensus 27 i~l~v~-d~~~a~~FY~~~lG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~-g~~ 94 (240)
.-|..+ |.++|++||+++||.++..+....+ +..-++-+..+.. .+.+...........+. --.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeE
Confidence 346677 9999999999999999988866655 3445555555532 12222221111111222 234
Q ss_pred eEEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 95 ~i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
.|.+.++|++++.+++.+.|+++..+.....+|.+. ..+.||.|+.|.|....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~-G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRY-GQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccce-EEEECCCCCEEEEecCc
Confidence 566778889999999999999999999999998775 88999999999997664
No 99
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.04 E-value=3.2e-10 Score=78.61 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=59.7
Q ss_pred eeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc--cccCcceeEEEEcCCC
Q 026313 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVNTSPSG 232 (240)
Q Consensus 155 ~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~g~~Hiaf~v~d 232 (240)
+||.+.|+|++++.+||+++||+.+......+.......++..++. ...||+....+..+ ...|.|++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999998877665556666666666552 25688765543322 1366799999999999
Q ss_pred cccc
Q 026313 233 SISN 236 (240)
Q Consensus 233 i~~~ 236 (240)
+...
T Consensus 79 ~d~~ 82 (109)
T PF13669_consen 79 LDAA 82 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 100
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.04 E-value=9.7e-10 Score=91.75 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=74.1
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCC-----CceeeEEeecCCCcceeEEEEEeccC-------Ccc
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----EKYSNAFLGFGPEQSHFVVELTYNYG-------VTS 86 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~-----~~~~~~~l~~g~~~~~~~l~l~~~~~-------~~~ 86 (240)
..+.+|+||++.|++++.+..||+++|||+.......++ .+.+...+..+. ..+.++|..+.. ...
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHH
Confidence 357899999999999999999999999999876543322 123455555433 234455555321 111
Q ss_pred ---ccCCCCceeEEEEeCcHHHHHHHHHHc----CCeeecCC
Q 026313 87 ---YDIGTGFGHFAIATEDVYKLVENIRAK----GGNVTREP 121 (240)
Q Consensus 87 ---~~~~~g~~~i~~~v~dl~~~~~~l~~~----G~~~~~~~ 121 (240)
...|.|++||||.|+|+.++.++|+++ |+++...|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 235789999999999999999999999 99988754
No 101
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.03 E-value=3.8e-09 Score=72.08 Aligned_cols=118 Identities=18% Similarity=0.259 Sum_probs=73.4
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEec-c-----CCccccCCCCcee
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN-Y-----GVTSYDIGTGFGH 95 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~-~-----~~~~~~~~~g~~~ 95 (240)
++...|+|.|+|++++++||+. |||+......... ....+ .+.. ... +-|... . ..-.....+.-.-
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi-~~~n-i~v-MLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMI-ISDN-IFV-MLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEE-Eecc-EEE-EEeccHHhhhhcccccccccCCceEE
Confidence 3567899999999999999986 9999765433211 12222 1211 111 111111 0 0011112334456
Q ss_pred EEEEeC---cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 96 FAIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 96 i~~~v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
|++.+. +++++.++..+.|.+...++..... .+-..|.||||+.||++.-.
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeC
Confidence 788775 5899999999999998766654432 22267999999999998643
No 102
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=99.03 E-value=2.7e-08 Score=67.61 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=67.6
Q ss_pred eEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeCcHH
Q 026313 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (240)
Q Consensus 25 ~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~dl~ 104 (240)
.+-.|.|+|-+..++||++.|||++..+.. ..++++.......++|+-++............+..+.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999998755 26777765555556666554433334455567999999999987
Q ss_pred HHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcC
Q 026313 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (240)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~ 148 (240)
++.+ |.++|.++.. ...+..++.+-..+|+|..|.+....
T Consensus 76 EIe~-LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 EIEA-LLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHH-HHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHH-HHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcC
Confidence 7644 4456655322 22333444466789999999998654
No 103
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.02 E-value=1.7e-09 Score=76.06 Aligned_cols=83 Identities=46% Similarity=0.783 Sum_probs=58.9
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCC-cccccCcceeEEEEcCCC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~g~~Hiaf~v~d 232 (240)
+.|+.+.++|++++.+||+++|||++......++..+..+++++.....+..+++....+. .....+++++|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999987654444456667777644112345666544322 222345589999999999
Q ss_pred cccc
Q 026313 233 SISN 236 (240)
Q Consensus 233 i~~~ 236 (240)
+...
T Consensus 81 id~~ 84 (121)
T cd07233 81 VYAA 84 (121)
T ss_pred HHHH
Confidence 7654
No 104
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.01 E-value=1.3e-09 Score=78.51 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcC
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSP 230 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v 230 (240)
|.+++|+.|.|+|++++.+||+++|||++...... ...|+.++....++.+.+..... ...|++|+||.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 46799999999999999999999999998765421 24566654322345566542221 135899999999
Q ss_pred CCccc
Q 026313 231 SGSIS 235 (240)
Q Consensus 231 ~di~~ 235 (240)
+|+..
T Consensus 71 ~d~~~ 75 (134)
T cd08360 71 GDIDE 75 (134)
T ss_pred CCHHH
Confidence 99864
No 105
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.00 E-value=1.6e-09 Score=78.85 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcc-eeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEc
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK-YTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTS 229 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~ 229 (240)
+.+++|++|.|+|++++.+||+++|||++..+...+++. ....|++++.. ++.+.+... .+.+++|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEEE
Confidence 457999999999999999999999999988775433332 23556666543 233433211 13489999999
Q ss_pred CCCccc
Q 026313 230 PSGSIS 235 (240)
Q Consensus 230 v~di~~ 235 (240)
|+|+.+
T Consensus 75 v~d~~~ 80 (143)
T cd07243 75 LESWED 80 (143)
T ss_pred cCCHHH
Confidence 999754
No 106
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=98.95 E-value=2e-09 Score=82.10 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=57.7
Q ss_pred CceeEEEEec--CccccHHHHHHhcCCeeeeeecCCC--cceeEEEeccccCCceeEEEEEEecC--Cc-------cccc
Q 026313 153 PLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYG--VT-------EYTK 219 (240)
Q Consensus 153 ~~~hv~l~~~--d~~~~~~fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-------~~~~ 219 (240)
.++|+++.|+ |++++.+||+++|||++......++ .......+.... ....|++..... .. ..+.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 5899999999 9999999999999999887665433 233334444322 235566653322 11 1245
Q ss_pred CcceeEEEEcCCCccccc
Q 026313 220 GNAYAQVNTSPSGSISNY 237 (240)
Q Consensus 220 g~g~~Hiaf~v~di~~~~ 237 (240)
|.|++|+||.|+||...+
T Consensus 81 G~Gv~HIAf~vdDI~~~~ 98 (191)
T cd07250 81 GAGVQHIALATDDIFATV 98 (191)
T ss_pred CCceeEEEEECCCHHHHH
Confidence 789999999999997653
No 107
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.93 E-value=9.8e-10 Score=80.95 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=53.7
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCC-CcceeEEEeccccCC---ceeEEEEEEecCCcccccCcceeEEEE
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVNT 228 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~g~g~~Hiaf 228 (240)
+++||.|.|+|++++.+||+++|||++.+....+ ++.....|+.++... .++.+.+.. ..+.|++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999998765433 233456777764321 011122211 11458999999
Q ss_pred cCCCcccc
Q 026313 229 SPSGSISN 236 (240)
Q Consensus 229 ~v~di~~~ 236 (240)
.|+|+...
T Consensus 74 ~v~die~~ 81 (153)
T cd07257 74 EVHDFDAQ 81 (153)
T ss_pred EcCCHHHH
Confidence 99998764
No 108
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.92 E-value=6.3e-09 Score=73.48 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=52.7
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc---cccCcceeEEEEc
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVNTS 229 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~g~g~~Hiaf~ 229 (240)
++.|+.|.|+|++++.+||+++|||++..+...+..++..+|+..++ ...+++...+.... .....|++|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999876543333344455666542 24566643322111 1223489999999
Q ss_pred CCCc
Q 026313 230 PSGS 233 (240)
Q Consensus 230 v~di 233 (240)
|+|.
T Consensus 78 v~~~ 81 (125)
T cd07241 78 VGSK 81 (125)
T ss_pred CCCH
Confidence 9763
No 109
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.90 E-value=3.7e-09 Score=76.70 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=49.5
Q ss_pred eeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcc
Q 026313 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSI 234 (240)
Q Consensus 155 ~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~ 234 (240)
+||.|.|+|++++.+||+++|||+++++... ...|+++..+..++.+.+. + ....|++|+||.|+|+.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~--~-----~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVG--P-----ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeec--c-----CCCCceEEEEEECCCHH
Confidence 5899999999999999999999999877431 3567776543233444432 1 11338999999999864
No 110
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=98.86 E-value=1.2e-08 Score=75.74 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcC
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSP 230 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v 230 (240)
|.+++|+.|.|+|++++.+||+++|||++......+.+.....++..+.. ++.+.+.. ..+.|++|+||.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEec-------CCCCceeEEEEEc
Confidence 46799999999999999999999999999866543333334455554332 23344321 1245899999999
Q ss_pred CCc
Q 026313 231 SGS 233 (240)
Q Consensus 231 ~di 233 (240)
+|.
T Consensus 72 ~~~ 74 (161)
T cd07256 72 PEP 74 (161)
T ss_pred CCH
Confidence 874
No 111
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=98.84 E-value=1.1e-08 Score=76.07 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeee----cC--------------CCcceeEEEeccccCCceeEEEEEEecC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTV----DK--------------PEYKYTLAMLGYAEEDQTTVLELTYNYG 213 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (240)
.+++||.|.|+|++++.+||+++|||++..+. .. ........++..++ ...|++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 46899999999999999999999999875311 10 01124455665443 23477754432
Q ss_pred Cc-cc----ccCcceeEEEEcCCCcccc
Q 026313 214 VT-EY----TKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 214 ~~-~~----~~g~g~~Hiaf~v~di~~~ 236 (240)
.. +. ..+.|++|+||.|+||...
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~ 107 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGL 107 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHH
Confidence 21 11 1245899999999998654
No 112
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.81 E-value=1.4e-08 Score=72.04 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=55.8
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCC-CcceeEEEeccccCCceeEEEEEEecCCc-c-----cccCcceeEE
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVT-E-----YTKGNAYAQV 226 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-----~~~g~g~~Hi 226 (240)
++||.|.|+|++++.+||+++|||++....... ++....++++.++ ..+++....... . ...+.|+.|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGN----VQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCC----EEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999998765432 3345566676532 456654432211 1 1345689999
Q ss_pred EEcCCCcccc
Q 026313 227 NTSPSGSISN 236 (240)
Q Consensus 227 af~v~di~~~ 236 (240)
||.|+|+...
T Consensus 77 ~f~v~d~~~~ 86 (128)
T cd07249 77 AFEVDDIDAA 86 (128)
T ss_pred EEEeCCHHHH
Confidence 9999997654
No 113
>PRK11478 putative lyase; Provisional
Probab=98.81 E-value=1.1e-08 Score=72.82 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCC-cceeEEEeccccCCceeEEEEEEecCCc---ccccCcceeEEE
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQVN 227 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~g~g~~Hia 227 (240)
.+++|+.+.|+|++++.+||+++|||++......++ ..+... +..+. +..+++....... ......|++|+|
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 458999999999999999999999999864321111 222222 22222 3456664322111 011234899999
Q ss_pred EcCCCcccc
Q 026313 228 TSPSGSISN 236 (240)
Q Consensus 228 f~v~di~~~ 236 (240)
|.|+|+...
T Consensus 81 f~v~d~~~~ 89 (129)
T PRK11478 81 FSVDDIDAA 89 (129)
T ss_pred EEeCCHHHH
Confidence 999998654
No 114
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=98.81 E-value=1.6e-08 Score=71.82 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=55.0
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCc-c---c--ccCcceeEE
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-E---Y--TKGNAYAQV 226 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~--~~g~g~~Hi 226 (240)
+++|+.+.|+|++++.+||+++|||++......++.++..+++..++ ..+++....+.. . . ..+.|++|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 47899999999999999999999999976543333445666666543 345654321111 0 0 124589999
Q ss_pred EEcCCCcccc
Q 026313 227 NTSPSGSISN 236 (240)
Q Consensus 227 af~v~di~~~ 236 (240)
||.|+|+...
T Consensus 77 ~~~v~di~~~ 86 (128)
T TIGR03081 77 AIEVDDIEAA 86 (128)
T ss_pred EEEcCCHHHH
Confidence 9999998653
No 115
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=98.81 E-value=1.8e-08 Score=72.66 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=51.8
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc------cccCcceeEEE
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVN 227 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~g~g~~Hia 227 (240)
++|+.|.|+|++++.+||+++|||++..+...+ .....++..+ ...+.+........ ...+.|++|+|
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 579999999999999999999999998764322 1223434322 23455532211111 12355899999
Q ss_pred EcCCCccccc
Q 026313 228 TSPSGSISNY 237 (240)
Q Consensus 228 f~v~di~~~~ 237 (240)
|.|+||...|
T Consensus 75 ~~V~Dvda~~ 84 (136)
T cd08342 75 FRVDDAAAAY 84 (136)
T ss_pred EEeCCHHHHH
Confidence 9999987654
No 116
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.80 E-value=1.5e-08 Score=73.53 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCC-----------cceeEEEeccccCCceeEEEEEEecCCc-----
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVT----- 215 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 215 (240)
.+++|+.+.|+|++++.+||++ |||++......++ ......++...+ ....|++.......
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 3589999999999999999998 9998865432211 123445554322 23457775432111
Q ss_pred --ccccCcceeEEEEcCCCccccc
Q 026313 216 --EYTKGNAYAQVNTSPSGSISNY 237 (240)
Q Consensus 216 --~~~~g~g~~Hiaf~v~di~~~~ 237 (240)
....+.|++|+||.|+|+...+
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~ 102 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARV 102 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHH
Confidence 0123458999999999997654
No 117
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=98.80 E-value=1.7e-08 Score=74.40 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCCCceeEEEEecCccccHHHHHHhcCCeeeeeecCC---CcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEE
Q 026313 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (240)
Q Consensus 150 ~~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hi 226 (240)
.+.+++|+.|.|+|++++.+||+++|||++......+ +......|+++++. ++.+.+.... .+.|++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~------~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEGP------GPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcCC------CCceeEEE
Confidence 3567999999999999999999999999987653221 12345667776543 2334443221 13489999
Q ss_pred EEcCCCcc
Q 026313 227 NTSPSGSI 234 (240)
Q Consensus 227 af~v~di~ 234 (240)
||.|+|+.
T Consensus 78 af~V~d~~ 85 (154)
T cd07237 78 MLEVTSLD 85 (154)
T ss_pred EEEcCCHH
Confidence 99999864
No 118
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.76 E-value=9.9e-08 Score=77.37 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=69.7
Q ss_pred eeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEeC-
Q 026313 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE- 101 (240)
Q Consensus 23 ~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v~- 101 (240)
+..||+|.|+|+++|++||+.+||+.. .+... .+.+ + ..-+.+-+.+. . .....-.-+|+.++
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde~------a~cm--~--dtI~vMllt~~-D----~~~~~evLl~Ls~~S 310 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGDK------LFLL--G--KTSLYLQQTKA-E----KKNRGTTTLSLELEC 310 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCCc------cccc--c--CcEEEEEecCC-C----CCCcceEEEEeccCC
Confidence 457999999999999999999988884 32211 1111 2 12222222222 1 11223456788886
Q ss_pred --cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 102 --DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 102 --dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+++++.++..++|.+...++.+... . -.|.||||+.||++..
T Consensus 311 re~VD~lv~~A~aaGG~~~~~~~D~Gf--~--rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 311 EHDFVRFLRRWEMLGGELGEQADGHFP--L--RLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccccC--c--ceeECCCCCEEEEEEE
Confidence 4899999999999976555554444 2 4589999999999864
No 119
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.75 E-value=3.5e-08 Score=72.97 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=49.7
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc-cccCcceeEEEEcCCC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVNTSPSG 232 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~g~~Hiaf~v~d 232 (240)
++||.+.|+|++++.+||+++|||++..... . .+.+...+. ..++.|.+........ .....+++|+||.|+|
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d 75 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPD 75 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECCC
Confidence 6899999999999999999999999987643 1 233333321 1245677754422211 1222479999999998
No 120
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.74 E-value=1.1e-07 Score=67.83 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=78.7
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccc--cCCCCceeE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHF 96 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~--~~~~g~~~i 96 (240)
+.+.++++|.+.++|.+++..+++ .|||+.+.+-.. . ....++.| ..++++.-.+......+ .+|+++..|
T Consensus 5 ~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs--k--~v~l~rQG--~I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 5 LGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRS--K--DVTLYRQG--DINFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp T-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECC--C--SEEEEEET--TEEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCC--c--ceEEEEeC--CEEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 478999999999999888888886 599999876321 1 13333323 45555543222211122 388999999
Q ss_pred EEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 97 ~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
+|+|+|.++++++..++|.+...++. ..+...+.-++.++|.++.|++...
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~--~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPT--GPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEE--ETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCC--CCCcEeeeeEEccCCCEEEEEecCC
Confidence 99999999999999999998766542 2223344667999999999998754
No 121
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=98.74 E-value=4.6e-08 Score=68.92 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=48.8
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.+++|+.|.|+|++++.+||+++|||++..+.. ...++++.+...++.+.+... ...|++|+||.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEEcC
Confidence 468999999999999999999999999887532 134455433222344555322 1348999999998
Q ss_pred Cc
Q 026313 232 GS 233 (240)
Q Consensus 232 di 233 (240)
|.
T Consensus 72 ~~ 73 (121)
T cd09013 72 SP 73 (121)
T ss_pred CH
Confidence 53
No 122
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=4.1e-09 Score=74.91 Aligned_cols=83 Identities=35% Similarity=0.469 Sum_probs=49.6
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccC---------------CceeEEEEEEecCCcc--
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYGVTE-- 216 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~-- 216 (240)
+.+..+.+.|+.+++.||++++|+.+.......+..+..+|+++... -.+..+|++++++..+
T Consensus 23 ~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~ 102 (170)
T KOG2944|consen 23 LQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP 102 (170)
T ss_pred hhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc
Confidence 45555666666666666666666666554433333334444443210 0145789999887542
Q ss_pred ---ccc----CcceeEEEEcCCCcccc
Q 026313 217 ---YTK----GNAYAQVNTSPSGSISN 236 (240)
Q Consensus 217 ---~~~----g~g~~Hiaf~v~di~~~ 236 (240)
++. ++|.|||||+|+||.++
T Consensus 103 ~~~~~ngN~~prGfgHIci~V~di~sa 129 (170)
T KOG2944|consen 103 DQAYLNGNKEPRGFGHICIEVDDINSA 129 (170)
T ss_pred chhhcCCCCCCCccceEEEEeCCHHHH
Confidence 222 34999999999999765
No 123
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=98.69 E-value=6.4e-08 Score=72.23 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.+++|+.|.|+|++++.+||+++|||++......+.+.....|+..+.. +..+.+... .. ....+++|+||.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~--~~--~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRD--PA--GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecC--CC--CCCCCceEEEEECC
Confidence 4689999999999999999999999998776544333333456655432 223333211 11 11237899999999
Q ss_pred Ccc
Q 026313 232 GSI 234 (240)
Q Consensus 232 di~ 234 (240)
|+.
T Consensus 79 ~~~ 81 (166)
T cd09014 79 TRE 81 (166)
T ss_pred CHH
Confidence 764
No 124
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.68 E-value=8.4e-08 Score=67.54 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=51.6
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCC-cceeEEEeccccCCceeEEEEEEecCC--cc-cccCcceeEEEE
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGV--TE-YTKGNAYAQVNT 228 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-~~~g~g~~Hiaf 228 (240)
+++|+.|.|+|++++.+||+++|||++......++ ..+.+. +..+. ...+++...... .. ...+.|++|++|
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~-~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLD-LLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEE-EecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 58999999999999999999999999876532222 233322 22211 234555433221 11 113458999999
Q ss_pred cCCCcccc
Q 026313 229 SPSGSISN 236 (240)
Q Consensus 229 ~v~di~~~ 236 (240)
.|+|+...
T Consensus 79 ~v~d~~~~ 86 (125)
T cd08352 79 SVEDIEAA 86 (125)
T ss_pred EeCCHHHH
Confidence 99998653
No 125
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=76.13 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=74.4
Q ss_pred cCCcceeeEEEEEEC--CHHHHHHHhhhhcCCEEEEEEecCCC--ceeeEEeecCCCcceeEEEEEeccCCcc-------
Q 026313 18 KKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGVTS------- 86 (240)
Q Consensus 18 ~~~i~~i~hi~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~~~------- 86 (240)
...+..|+|++..|. .++.+..||+++|||+.......++. +.+.-.+. +....+.|.+.......+
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~--Sp~G~vrlplN~s~~~~sqi~efl~ 239 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMV--SPCGKVRLPLNESADDKSQIGEFLR 239 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEe--cCCCcEEeecccCCCchhHHHHHHH
Confidence 345679999999988 99999999999999998877655442 22222222 112234455544322211
Q ss_pred ccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCcc
Q 026313 87 YDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGP 123 (240)
Q Consensus 87 ~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~~ 123 (240)
...|.|+.||+|.++|+-++.++|+++|+++...|..
T Consensus 240 ~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 240 EYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred HhCCCcceEEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 2378899999999999999999999999998776553
No 126
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=98.62 E-value=3.2e-07 Score=64.68 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCc-ceeEEEeccccCCceeEEEEEEecCCcc--cccCcceeEEEEcC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-KYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVNTSP 230 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~g~~Hiaf~v 230 (240)
++|+.|.|.|++++.+||+++|||++......++. ....+++..........+++...+.... .....+++|+||.|
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~v 81 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFSV 81 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEEc
Confidence 68999999999999999999999998776543222 1122333322111234566643322211 11223789999999
Q ss_pred CCc
Q 026313 231 SGS 233 (240)
Q Consensus 231 ~di 233 (240)
+|.
T Consensus 82 ~~~ 84 (126)
T cd08346 82 PSE 84 (126)
T ss_pred CCH
Confidence 853
No 127
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.61 E-value=3.3e-07 Score=71.43 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=56.8
Q ss_pred CCcceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccc-cCCCCceeEE
Q 026313 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY-DIGTGFGHFA 97 (240)
Q Consensus 19 ~~i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~-~~~~g~~~i~ 97 (240)
+.-+.|.||.|.|.|++++.+||+++|||+++.+ .. ...|+..|....++....+........ ....|+..+.
T Consensus 164 p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~-~~-----~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~ 237 (265)
T COG2514 164 PAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR-GP-----SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLE 237 (265)
T ss_pred CCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec-CC-----cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEE
Confidence 3457899999999999999999999999999987 22 257888887666665554443322222 2445777777
Q ss_pred EEeCcH
Q 026313 98 IATEDV 103 (240)
Q Consensus 98 ~~v~dl 103 (240)
+.+++-
T Consensus 238 i~~~~~ 243 (265)
T COG2514 238 IHTPDP 243 (265)
T ss_pred EEcCCc
Confidence 877763
No 128
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=98.59 E-value=1.8e-07 Score=68.15 Aligned_cols=71 Identities=17% Similarity=0.330 Sum_probs=51.0
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcC
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSP 230 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v 230 (240)
+.++.|+.|.|.|++++.+||+++|||++..+.. . ...|++++.. ++.+.+... ...+++|+||.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----D-QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----C-eEEEEECCCC--cceEEEccC-------CCCceEEEEEEC
Confidence 3478999999999999999999999999875532 1 2456676543 233444211 134899999999
Q ss_pred CCccc
Q 026313 231 SGSIS 235 (240)
Q Consensus 231 ~di~~ 235 (240)
+|+..
T Consensus 68 ~d~~~ 72 (144)
T cd07239 68 PSIDE 72 (144)
T ss_pred CCHHH
Confidence 98754
No 129
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=98.59 E-value=1.5e-07 Score=66.32 Aligned_cols=69 Identities=22% Similarity=0.156 Sum_probs=46.2
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.++.|+.|.|+|++++.+||+++|||++..... ++ ..++++.+...++.+.+. . ....+++|+||.|.
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~--~-----~~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLR--E-----ADTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEec--c-----CCCCCeeEEEEEeC
Confidence 468999999999999999999999999876531 11 123333221122344442 1 11348999999998
Q ss_pred C
Q 026313 232 G 232 (240)
Q Consensus 232 d 232 (240)
+
T Consensus 71 ~ 71 (122)
T cd07265 71 D 71 (122)
T ss_pred C
Confidence 4
No 130
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=98.56 E-value=6.9e-08 Score=68.15 Aligned_cols=47 Identities=32% Similarity=0.539 Sum_probs=37.4
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeec--CCCcceeEEEecccc
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVD--KPEYKYTLAMLGYAE 199 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~--~~~~~~~~~~~~~~~ 199 (240)
+++||.+.|.|++++.+||+++|||++..... .+.......++..+.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE 49 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc
Confidence 37899999999999999999999999998765 233444556666555
No 131
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=98.54 E-value=3.6e-07 Score=65.44 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=50.1
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
++.|+.+.++|++++.+||+++|||++...... ....++..+.. .+..+.+.............+++|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999998765321 12334443311 1334555433222101233489999999998
Q ss_pred cc
Q 026313 233 SI 234 (240)
Q Consensus 233 i~ 234 (240)
+.
T Consensus 76 ~~ 77 (134)
T cd08348 76 LD 77 (134)
T ss_pred HH
Confidence 64
No 132
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=98.50 E-value=1.8e-07 Score=64.49 Aligned_cols=76 Identities=21% Similarity=0.101 Sum_probs=50.3
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc-cccCcceeEEEEcCCC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVNTSPSG 232 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~g~~Hiaf~v~d 232 (240)
++|+.+.|+|++++.+||+++|||++..+...+ ....++..++. ..+++...++... ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 579999999999999999999999987653322 12234444332 2455544433221 1234478999999999
Q ss_pred ccc
Q 026313 233 SIS 235 (240)
Q Consensus 233 i~~ 235 (240)
+.+
T Consensus 75 ~~~ 77 (114)
T cd07245 75 LDA 77 (114)
T ss_pred HHH
Confidence 754
No 133
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=98.49 E-value=6e-07 Score=64.15 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=50.6
Q ss_pred eeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcc
Q 026313 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSI 234 (240)
Q Consensus 155 ~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~ 234 (240)
+||.|.|+|++++.+||+++|||++......+ +....+|++.++. ++.+.+.... ...|++|++|.|+|+.
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999997665433 3335556665432 3345543211 1348999999999874
No 134
>PRK10148 hypothetical protein; Provisional
Probab=98.49 E-value=2.8e-05 Score=56.69 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=74.5
Q ss_pred EEEEEC-CHHHHHHHhhhhcCCEEEEEEec--------------------CCCceeeEEeecCCCcceeEEEEEeccCCc
Q 026313 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDV--------------------PEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85 (240)
Q Consensus 27 i~l~v~-d~~~a~~FY~~~lG~~~~~~~~~--------------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~ 85 (240)
.-|..+ |.++|.+||+++||.++...... +.+..-.+.+..+.. . +.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~--~--lm~sD~~~~~ 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS--D--IMMSDAIPSG 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE--E--EEEECCCCCc
Confidence 345554 89999999999999887654310 112333555555432 1 2222211111
Q ss_pred cccCCCCceeEEEEeCcHHH---HHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCCCC
Q 026313 86 SYDIGTGFGHFAIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (240)
Q Consensus 86 ~~~~~~g~~~i~~~v~dl~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 151 (240)
...+ .-.++++.++|.++ +.++| +.|.++..++....++... ..+.||-|+.|.|......|
T Consensus 81 -~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~-g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 -KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGF-GKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred -CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhcc-EEEECCCCCEEEEEecCCCC
Confidence 1111 24467777778665 66666 4888888888888887665 88999999999998765444
No 135
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.46 E-value=1e-06 Score=62.16 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=49.6
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCc-ccccCcceeEEEEcCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVNTSPS 231 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~g~~Hiaf~v~ 231 (240)
+++|+.|.|+|++++.+||+++|||++..... ..+++++++ ....|.+...+... ......|++|++|.|.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 58999999999999999999999999986521 134455443 23445554433221 1123348999999998
Q ss_pred C
Q 026313 232 G 232 (240)
Q Consensus 232 d 232 (240)
|
T Consensus 74 ~ 74 (125)
T cd07255 74 S 74 (125)
T ss_pred C
Confidence 6
No 136
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=98.46 E-value=4.4e-07 Score=65.61 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=46.9
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC-
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS- 231 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~- 231 (240)
++.|+.|.|+|++++.+||+++|||++..+.. ...++..+. ..+.+...+.......+.|++|+||.|+
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~ 73 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFSIEE 73 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEEecH
Confidence 58999999999999999999999999875421 123334322 2344422221111122347899999987
Q ss_pred -Cccc
Q 026313 232 -GSIS 235 (240)
Q Consensus 232 -di~~ 235 (240)
|+..
T Consensus 74 ~dv~~ 78 (139)
T PRK04101 74 EDFDH 78 (139)
T ss_pred HHHHH
Confidence 5543
No 137
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=98.46 E-value=2.8e-07 Score=65.99 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=43.9
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
+.||.|.|+|++++.+||+++|||++.... +. ..++.+++ ..+.+...++........|++|+||.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~--~~----~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~ 69 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG--EK----TAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIED 69 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC--Cc----cceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecH
Confidence 579999999999999999999999986431 11 12233332 23444322221111122378999999974
No 138
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=98.45 E-value=5.9e-07 Score=63.17 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=46.3
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
+++|+.|.|+|++++.+||+++|||++..+.. . ...++..+.. ++.+.+.... .+++.|++|.|++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEECC
Confidence 58999999999999999999999999865421 1 1344444332 3445553211 2478999999976
No 139
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.45 E-value=3.4e-07 Score=63.71 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=49.5
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc--cccCcceeEEEEcCCCc
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVNTSPSGS 233 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~g~g~~Hiaf~v~di 233 (240)
|+.+.|.|++++.+||+++|||++.......+ ....+.+...+. ....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999987654222 222333332221 123454432222210 12234788999999998
Q ss_pred ccc
Q 026313 234 ISN 236 (240)
Q Consensus 234 ~~~ 236 (240)
.+.
T Consensus 79 ~~~ 81 (119)
T cd07263 79 DAT 81 (119)
T ss_pred HHH
Confidence 653
No 140
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=98.41 E-value=6.2e-07 Score=62.36 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=45.2
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
++.|+.|.|+|++++.+||++ |||++..+.. + ..++.++... +..+... . ...+++.|+||.|+|
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~~-~~~~~~~-~------~~~~~~~~~af~v~~ 67 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGTD-PFVYVAR-K------GEKARFVGAAFEAAS 67 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCCc-cEEEEcc-c------CCcCcccEEEEEECC
Confidence 589999999999999999999 9999876531 1 2344543222 2222211 1 112489999999999
Q ss_pred cc
Q 026313 233 SI 234 (240)
Q Consensus 233 i~ 234 (240)
+.
T Consensus 68 ~~ 69 (113)
T cd07267 68 RA 69 (113)
T ss_pred HH
Confidence 74
No 141
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=98.38 E-value=1e-06 Score=62.41 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=46.6
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.+++|+.|.|+|++++.+||+++|||++..+.. ...|++++.. ++.+.+... .++..|+||.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeC--------CCceEEEEEEEC
Confidence 358999999999999999999999999875421 1345666432 233444311 136789999998
Q ss_pred C
Q 026313 232 G 232 (240)
Q Consensus 232 d 232 (240)
|
T Consensus 69 ~ 69 (124)
T cd08361 69 D 69 (124)
T ss_pred C
Confidence 6
No 142
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=98.36 E-value=1.3e-06 Score=59.48 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=51.0
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCccc
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSIS 235 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~ 235 (240)
|+.+.++|++++.+||+++|||++...... ......+++++ ...+++...++......+.+++|++|.|+|+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 788999999999999999999998876532 12244455543 245666544332211235588999999999843
No 143
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=98.35 E-value=2e-06 Score=59.80 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=47.0
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
+++|+.+.++|++++.+||+++|||++..... ...++..+.. .++.+.+...+ ..+++|++|.|+|
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~-------~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED-DHHSLVLTEGD-------EPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC-CcEEEEEEeCC-------CCCceeEEEEcCC
Confidence 58999999999999999999999999986531 1344444421 23344443221 2378999999985
Q ss_pred c
Q 026313 233 S 233 (240)
Q Consensus 233 i 233 (240)
.
T Consensus 68 ~ 68 (117)
T cd07240 68 E 68 (117)
T ss_pred H
Confidence 3
No 144
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=98.32 E-value=1.8e-06 Score=60.61 Aligned_cols=68 Identities=28% Similarity=0.217 Sum_probs=45.1
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.++.|+.|.|+|++++.+||+++|||++..... . .++++......++.+.+... ...+++|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D--RIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C--eEEEEecCCCceEEEEEeeC-------CCCceeEEEEECC
Confidence 368999999999999999999999999876421 1 22333222112333443211 1248999999995
Q ss_pred C
Q 026313 232 G 232 (240)
Q Consensus 232 d 232 (240)
+
T Consensus 70 ~ 70 (121)
T cd07266 70 S 70 (121)
T ss_pred C
Confidence 3
No 145
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.31 E-value=3.8e-06 Score=59.52 Aligned_cols=72 Identities=21% Similarity=0.225 Sum_probs=47.1
Q ss_pred CceeEEEEecCccccHHHHHHhc---CCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc---cccCcceeEE
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 226 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~g~g~~Hi 226 (240)
.++||.+.+.|++++.+||+++| ||++..... ++ .. +... . .+..+.+........ ...+.|++|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~--~~-~~~~-~--~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG--RS-WRAG-D--GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC--ce-EEec-C--CceEEEEEecccCCCcccccCCcCeeEE
Confidence 37899999999999999999999 999987542 11 11 2221 1 134455543322111 1234589999
Q ss_pred EEcCCC
Q 026313 227 NTSPSG 232 (240)
Q Consensus 227 af~v~d 232 (240)
||.|.|
T Consensus 73 a~~v~~ 78 (128)
T cd07242 73 AFRAPS 78 (128)
T ss_pred EEEcCC
Confidence 999986
No 146
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.24 E-value=3.1e-06 Score=60.49 Aligned_cols=72 Identities=11% Similarity=0.190 Sum_probs=44.2
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcce-eEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.+.|+.+.|+|++++.+||+++|||++..+........ ...++..++ ..+++... .. ...++++|+||.|+
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~-~~---~~~~~~~Hiaf~v~ 75 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEG-DS---LQERTYNHIAFKIS 75 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecC-CC---CCCCCceEEEEEcC
Confidence 58999999999999999999999998765432111000 011122222 23455321 11 11337999999997
Q ss_pred C
Q 026313 232 G 232 (240)
Q Consensus 232 d 232 (240)
+
T Consensus 76 ~ 76 (131)
T cd08364 76 D 76 (131)
T ss_pred H
Confidence 3
No 147
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=98.23 E-value=2.9e-06 Score=59.37 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=44.8
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSG 232 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~d 232 (240)
.++|+.|.++|++++.+||+++|||++..... . .+++..+.. .++.+.+... ..++++|++|.|++
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v~~ 68 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSVAS 68 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCCC-ccEEEEeccC-------CCCCCceEEEEeCC
Confidence 58999999999999999999999999875421 1 234443332 2233443211 12378999999964
No 148
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.19 E-value=5.1e-06 Score=58.31 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=47.0
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCC---cccccCcceeEEEEc
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVNTS 229 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~g~g~~Hiaf~ 229 (240)
+++|+.+.|+|++++.+||+++|||+........ .+. .+..+. ..+++...... .....+.|++|++|.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~--~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~~ 74 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRK--ALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCLI 74 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cce--EEEeCC----EEEEEecCCCccCcCccCCCCCCceEEEE
Confidence 5899999999999999999999999998653211 122 223222 23444332211 111234589999999
Q ss_pred CCC
Q 026313 230 PSG 232 (240)
Q Consensus 230 v~d 232 (240)
|++
T Consensus 75 ~~~ 77 (125)
T cd07253 75 TEP 77 (125)
T ss_pred ecc
Confidence 975
No 149
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=98.18 E-value=5e-06 Score=57.64 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=47.5
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCc
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGS 233 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di 233 (240)
+.|+.|.|+|++++.+||+++||+++..... ++..+ .++..++ ...+.+....+.. ..+.+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999876542 12233 3344433 1222332222111 1233677999999998
Q ss_pred ccc
Q 026313 234 ISN 236 (240)
Q Consensus 234 ~~~ 236 (240)
...
T Consensus 73 ~~~ 75 (114)
T cd07247 73 DAA 75 (114)
T ss_pred HHH
Confidence 654
No 150
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.18 E-value=3.4e-06 Score=59.33 Aligned_cols=66 Identities=32% Similarity=0.374 Sum_probs=43.0
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
.+.|+.|.|+|++++.+||+++|||++....+ + ..++..+. ..+.+...+.. ...++++|++|.|+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~----~~~~l~~~~~~---~~~~~~~hi~f~v~ 66 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD----LWLCLSVDANV---GPAKDYTHYAFSVS 66 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC----EEEEEecCCCC---CCCCCeeeEEEEeC
Confidence 37899999999999999999999999875432 1 12333332 12233222211 12347899999884
No 151
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.18 E-value=9.2e-06 Score=57.07 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=47.4
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCccc----ccCcceeEEEEcCCC
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY----TKGNAYAQVNTSPSG 232 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~g~g~~Hiaf~v~d 232 (240)
-.|.+.|++++.+||+++|||++......+++......+..++ ..+.+......... ..+.+..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD----GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC----EEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 4678999999999999999999987654333333333333332 22333222211111 123467899999999
Q ss_pred ccccc
Q 026313 233 SISNY 237 (240)
Q Consensus 233 i~~~~ 237 (240)
++..|
T Consensus 79 ~d~~~ 83 (122)
T cd08355 79 VDAHY 83 (122)
T ss_pred HHHHH
Confidence 86543
No 152
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.05 E-value=2.1e-05 Score=55.08 Aligned_cols=67 Identities=25% Similarity=0.355 Sum_probs=43.0
Q ss_pred eeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCc
Q 026313 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGS 233 (240)
Q Consensus 155 ~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di 233 (240)
.|+.|.++|++++.+||+++|||+.....+ .+ ..|...+. ...+.+...... ..++++|+||.|+|+
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~~~~~---~~~~~~~~~~~~----~~~~~~h~~f~v~~~ 69 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFLLEDP---RLNFVLNERPGA----PGGGLNHLGVQVDSA 69 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEEecCC---ceEEEEecCCCC----CCCCeeEEEEEeCCH
Confidence 689999999999999999999999865431 12 22222221 223333211111 114899999999884
No 153
>PRK06724 hypothetical protein; Provisional
Probab=98.02 E-value=1.5e-05 Score=56.68 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.1
Q ss_pred CCceeEEEEecCccccHHHHHHhc---CCeee
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLL 180 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~l---G~~~~ 180 (240)
..++||.|.|+|+++|.+||+++| ||+..
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 468999999999999999999966 66654
No 154
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=98.02 E-value=6.9e-06 Score=56.78 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=40.5
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCC
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPS 231 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~ 231 (240)
|+.|.|+|++++.+||+++|||++..+.+ + ..++..+. ..+.+....... ..+.+++|+||.|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~ 64 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQ 64 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcC
Confidence 78999999999999999999999875432 1 11222221 233332222111 12347899999995
No 155
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.95 E-value=4.3e-05 Score=53.38 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=47.4
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCc--ccccCcceeEEEEcCCCcc
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVNTSPSGSI 234 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~g~~Hiaf~v~di~ 234 (240)
..|.|.|++++.+||+++|||++......+++......+..+. ..+.+....+.. ....+.+..|++|.|+|+.
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 3578899999999999999999987654344433333333322 234443211110 0012336789999999987
Q ss_pred ccc
Q 026313 235 SNY 237 (240)
Q Consensus 235 ~~~ 237 (240)
..|
T Consensus 81 ~~~ 83 (122)
T cd07246 81 ATF 83 (122)
T ss_pred HHH
Confidence 643
No 156
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.94 E-value=2.2e-05 Score=54.97 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=43.6
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCc------ccccCcceeEEE
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVN 227 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~g~g~~Hia 227 (240)
+.++.|.++|++++.+||+++|||++..+ +++. ..++.++.. ..+.+....... ......|++|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 36889999999999999999999998864 1222 234444432 223322211110 011234889999
Q ss_pred EcCC
Q 026313 228 TSPS 231 (240)
Q Consensus 228 f~v~ 231 (240)
|.|+
T Consensus 73 ~~v~ 76 (122)
T cd08354 73 FAIP 76 (122)
T ss_pred EEcC
Confidence 9985
No 157
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.91 E-value=4.3e-05 Score=53.65 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=43.7
Q ss_pred ceeEEEEecCccccHHHHHHh---cCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSP 230 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v 230 (240)
+.|+.|.|+|++++.+||+++ |||++.... +.. ... +..+.. ...+.+....+... ....+..|+||.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~-~~~-~~~~~~--~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPG-AVG-YGKGGG--GPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCc-eeE-eccCCC--CceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999999 689876442 112 222 333222 23344433222111 1122457999999
Q ss_pred CCc
Q 026313 231 SGS 233 (240)
Q Consensus 231 ~di 233 (240)
+|.
T Consensus 73 ~~~ 75 (123)
T cd07262 73 PSR 75 (123)
T ss_pred CCH
Confidence 984
No 158
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.91 E-value=1.9e-05 Score=55.60 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=27.5
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCeeee
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLR 181 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~ 181 (240)
.++.|+.+.|+|++++.+||+++|||++..
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 357899999999999999999999999865
No 159
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.89 E-value=2.6e-05 Score=54.83 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=25.7
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeee
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLR 181 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~ 181 (240)
+.|+.+.|+|++++.+||+++|||++..
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRF 28 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEe
Confidence 4689999999999999999999999864
No 160
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.82 E-value=3.3e-05 Score=54.09 Aligned_cols=29 Identities=41% Similarity=0.661 Sum_probs=26.4
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeee
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLR 181 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~ 181 (240)
++.++.|.|.|++++.+||+++|||++..
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEee
Confidence 46789999999999999999999999864
No 161
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=97.78 E-value=7.2e-05 Score=51.37 Aligned_cols=69 Identities=25% Similarity=0.261 Sum_probs=43.8
Q ss_pred EEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCccc
Q 026313 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSIS 235 (240)
Q Consensus 158 ~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~ 235 (240)
.|.|+|++++.+||+++|||++..... +..+ .+++.+ ...+.+........ ....+..|++|.|+|+.+
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDA 71 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHH
Confidence 588999999999999999999877542 1222 333322 23444433322211 123466799999999754
No 162
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=97.77 E-value=5.1e-05 Score=51.85 Aligned_cols=71 Identities=21% Similarity=0.164 Sum_probs=42.9
Q ss_pred EEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCccccc
Q 026313 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISNY 237 (240)
Q Consensus 159 l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~~ 237 (240)
|.|+|++++.+||+++|||++..... .+.....+ ..-......+...+.. .....+..|++|.|+|+...|
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~dv~~~~ 71 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPDP--PGPPGGGFHLCFEVEDVDALY 71 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEESS--SSSSSSEEEEEEEESHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCcc--ccCCCceeEEEEEEcCHHHHH
Confidence 57899999999999999999988322 12222222 1100112233222221 123448899999999887654
No 163
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.71 E-value=7.6e-05 Score=52.03 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=43.2
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCc-----ccccCcceeEEEEcC
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-----EYTKGNAYAQVNTSP 230 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~g~g~~Hiaf~v 230 (240)
+..|.++|++++.+||+++|||++..... . ... +..++. ...|.+....... ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~-~~~-~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----W-YVS-LRSPDG--GVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----c-EEE-EecCCC--ceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 46789999999999999999999875421 1 222 222221 2334332211110 01223344 899999
Q ss_pred CCccccc
Q 026313 231 SGSISNY 237 (240)
Q Consensus 231 ~di~~~~ 237 (240)
+|+...+
T Consensus 75 ~did~~~ 81 (119)
T cd08359 75 DDVDAEY 81 (119)
T ss_pred CCHHHHH
Confidence 9987543
No 164
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.67 E-value=3.9e-05 Score=61.06 Aligned_cols=105 Identities=23% Similarity=0.457 Sum_probs=72.5
Q ss_pred CCcCCcceeeEEEEEEC--CHHHHHHHhhhhcCCEEEEEEecCCCc-----eeeEEeecCCCcceeEEEEEecc-CCc--
Q 026313 16 WPKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEK-----YSNAFLGFGPEQSHFVVELTYNY-GVT-- 85 (240)
Q Consensus 16 ~~~~~i~~i~hi~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~-----~~~~~l~~g~~~~~~~l~l~~~~-~~~-- 85 (240)
.+.+.+.+|+|+...++ ..+.+.+||.+.|||..-+..+.+.-+ .+.+.+. +....+.+.+.++- +..
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~k 248 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKK 248 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccH
Confidence 45678999999999999 788999999999999876654432211 1111122 22223334443321 111
Q ss_pred -------cccCCCCceeEEEEeCcHHHHHHHHHHcCCeeecCCc
Q 026313 86 -------SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (240)
Q Consensus 86 -------~~~~~~g~~~i~~~v~dl~~~~~~l~~~G~~~~~~~~ 122 (240)
.+..|.|+.||++.++|+=++.+.|+++|+.+..+|.
T Consensus 249 sQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps 292 (381)
T KOG0638|consen 249 SQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPS 292 (381)
T ss_pred HHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCH
Confidence 1347889999999999999999999999999887664
No 165
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=97.65 E-value=9.9e-05 Score=50.91 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcccc
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~ 236 (240)
..|.|+|++++.+||+++|||++... .. ...++.++.. .++.+.+..... .+.+..|++|.|+|+...
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~-----~~-~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD-----HG-WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc-----CC-ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 36789999999999999999998642 11 2333443332 123344432211 123567999999998654
Q ss_pred c
Q 026313 237 Y 237 (240)
Q Consensus 237 ~ 237 (240)
+
T Consensus 72 ~ 72 (112)
T cd07238 72 L 72 (112)
T ss_pred H
Confidence 3
No 166
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=97.57 E-value=0.00016 Score=49.93 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=26.2
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeee
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRT 182 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~ 182 (240)
+++|+.|.|+|++++.+||+ +|||++..+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEee
Confidence 58999999999999999997 799998654
No 167
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=97.48 E-value=0.0003 Score=49.21 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=42.6
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcccc
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~ 236 (240)
..|.|.|++++.+||++ |||++...... .+ +++..++ ..|.+...... ..+....|++|.|+|+...
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~--~~~~~~~----~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---GY--MILRRGD----LELHFFAHPDL---DPATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---CE--EEEEcCC----EEEEEEecCcC---CCCCCcceEEEEeCCHHHH
Confidence 46889999999999999 99998764321 22 2233332 34555433211 1122345799999998754
Q ss_pred c
Q 026313 237 Y 237 (240)
Q Consensus 237 ~ 237 (240)
|
T Consensus 73 ~ 73 (120)
T cd08350 73 H 73 (120)
T ss_pred H
Confidence 4
No 168
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.48 E-value=0.00014 Score=51.06 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.9
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeee
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRT 182 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~ 182 (240)
|+.|.|+|++++.+||+++|||++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 899999999999999999999998643
No 169
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.48 E-value=0.00031 Score=48.49 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=41.3
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc-cccCcceeEEEEcCCC
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVNTSPSG 232 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~g~~Hiaf~v~d 232 (240)
+.|.|.|++++.+||+++|||++.... ..+...... + ...+.+...+.... .....+.+|++|.|.|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 69 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDD 69 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCC
Confidence 578999999999999999999987532 123332221 1 13344433322111 1123367899999987
No 170
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=97.33 E-value=0.00044 Score=48.55 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=33.9
Q ss_pred CCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEE
Q 026313 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLA 193 (240)
Q Consensus 151 ~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~ 193 (240)
+..+.|..|.+.|++++.+||.++|||+.++.....+..+...
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f 49 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVF 49 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEE
Confidence 4568899999999999999999999999998754433333333
No 171
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.25 E-value=0.00043 Score=47.96 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=40.9
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcccccCcceeEEEEcCCCcccc
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVNTSPSGSISN 236 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di~~~ 236 (240)
..|.|+|++++.+||++ |||++....+ . ..++.++. ..+.+....... ..+-.|++|.|+||...
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~--~~~l~~~~----~~l~l~~~~~~~----~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----N--LAYFRLGN----CAFYLQDYYVKD----WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----C--EEEEEcCC----EEEEeecCCCcc----cccCCEEEEEECCHHHH
Confidence 35788999999999987 9999976531 2 24445432 233332211111 11345789999999764
Q ss_pred c
Q 026313 237 Y 237 (240)
Q Consensus 237 ~ 237 (240)
|
T Consensus 70 ~ 70 (113)
T cd08356 70 Y 70 (113)
T ss_pred H
Confidence 4
No 172
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=97.23 E-value=0.00085 Score=47.13 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.5
Q ss_pred eeEEEEecCccccHHHHHHhcCCeeeee
Q 026313 155 CQVMLRVGDLGRSIKFYEKALGMKLLRT 182 (240)
Q Consensus 155 ~hv~l~~~d~~~~~~fy~~~lG~~~~~~ 182 (240)
.++.|.|+|++++.+||++ |||++...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~ 28 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQ 28 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccc
Confidence 5789999999999999976 99997643
No 173
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=96.92 E-value=0.0024 Score=47.99 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=40.1
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcce--eEEEeccccCCceeEEEEEEecCCcc------------ccc
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY--TLAMLGYAEEDQTTVLELTYNYGVTE------------YTK 219 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~ 219 (240)
++|+++.|+|++++.++|++.|||.+.....-+..+. .+++++ + .-||+....+... ...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~----~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D----GYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S----SEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C----ceEEEEEeCCcccccccccceechhhcC
Confidence 6899999999999999998899999998765544222 333332 2 2577755432211 123
Q ss_pred CcceeEEEEcCCCccc
Q 026313 220 GNAYAQVNTSPSGSIS 235 (240)
Q Consensus 220 g~g~~Hiaf~v~di~~ 235 (240)
+.|+.++||.++|+..
T Consensus 75 ~~g~~~~~l~t~d~~~ 90 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEA 90 (175)
T ss_dssp --EEEEEEEE-S-HHH
T ss_pred CCCeEEEEEecCCHHH
Confidence 5699999999999864
No 174
>PF15067 FAM124: FAM124 family
Probab=96.81 E-value=0.04 Score=42.56 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=63.6
Q ss_pred ceeeEEEEEEC--CHHHHHHHhhhhcCCEEEEEEecCCCceeeEEee-cCCCcceeEEEEEec-cCCccccCCCCceeEE
Q 026313 22 RRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLG-FGPEQSHFVVELTYN-YGVTSYDIGTGFGHFA 97 (240)
Q Consensus 22 ~~i~hi~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~l~l~~~-~~~~~~~~~~g~~~i~ 97 (240)
+.|--++++|+ |.+.+++||+-+|+-+...+... ..++. +.+....+.+.+..- .+..+ ....-.-+.
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~------FC~F~lys~~~~~iQlsLK~lp~~~~p--~p~esavLq 198 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKED------FCFFTLYSQPGLDIQLSLKQLPPGMSP--EPTESAVLQ 198 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC------cEEEEEecCCCeEEEEEeccCCCCCCc--ccccceEEE
Confidence 35677899999 99999999999999888655432 23332 333344444444332 11111 112345688
Q ss_pred EEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEE
Q 026313 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (240)
Q Consensus 98 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 144 (240)
|+|.|+.++...|- ..+ .+-+.++ ....|||||.|-|
T Consensus 199 F~V~~igqLvpLLP-npc--------~PIS~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLP-NPC--------SPISETR-WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCC-CCc--------ccccCCc-ceeeCCCCCEecc
Confidence 99999987644332 111 1222222 5679999999854
No 175
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0015 Score=45.61 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=29.7
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecC
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDK 185 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~ 185 (240)
++.|+.+.|+|++++.+||+++|||++......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~ 34 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVN 34 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeeccc
Confidence 578999999999999999999999999887543
No 176
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.73 E-value=0.0018 Score=44.96 Aligned_cols=26 Identities=46% Similarity=0.607 Sum_probs=23.8
Q ss_pred EEEEecCccccHHHHHHhcCCeeeee
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRT 182 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~ 182 (240)
|.|.|.|++++.+||+++|||++..+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc
Confidence 67899999999999999999998765
No 177
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.44 E-value=0.17 Score=35.17 Aligned_cols=101 Identities=19% Similarity=0.393 Sum_probs=54.1
Q ss_pred EEEEEECCHHHHHHHhhhhcCCE-EEEEEecCC------CceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEE
Q 026313 26 HAVYRVGDLDRTIKFYTECFGMK-LLRKRDVPE------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (240)
Q Consensus 26 hi~l~v~d~~~a~~FY~~~lG~~-~~~~~~~~~------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~ 98 (240)
|+.+. .+.++|.+||.++||-. +......++ +..-.+.+..+.. . +...... +.+..+++ ..+++
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~--~--lm~~D~~--~~~~~~~~-~sl~i 77 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ--K--LMASDGG--PDFPFGNN-ISLCI 77 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE--E--EEEEEES--TS----TT-EEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe--E--EEEECCC--CCCCCCCc-EEEEE
Confidence 34443 68999999999999943 333222222 2233444444322 1 2222221 22223333 56777
Q ss_pred EeCc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 99 ~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
.++| ++++.++|.+-|- .++ .+..+.|.-|..|.|+
T Consensus 78 ~~~~~ee~~~~f~~Ls~gG~---------~~~--~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDDEEEIDRIFDKLSEGGQ---------WFS--RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESSHHHHHHHHHHHHTTTE---------TCC--EEEEEE-TTS-EEEEE
T ss_pred EcCCHHHHHHHHHHHHcCCC---------ccc--eeEEEEeCCCCEEEeC
Confidence 7876 6667888887764 222 3478999999999875
No 178
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=95.99 E-value=0.0055 Score=42.68 Aligned_cols=27 Identities=33% Similarity=0.643 Sum_probs=23.8
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeee
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLR 181 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~ 181 (240)
++||.|.|.|++++.+||+. |||++..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~ 27 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPE 27 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecC
Confidence 57999999999999999964 9999753
No 179
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.39 E-value=0.11 Score=34.97 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=38.0
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCCCcceeEEEEEeccCCccc-cCCCCceeEEEEeC-
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY-DIGTGFGHFAIATE- 101 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~-~~~~g~~~i~~~v~- 101 (240)
+..|.|+|+| +++++||+++||-.. + ....+... +.+..... ...=++.-+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~------~---~~l~f~ea------------~G~DL~~~~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL------P---FFLTFQEA------------QGPDLTIENNETWDLEMLKFQVPK 63 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH------T---TTEEEEE---------------CCGSS-TTSBSSEEEEEEEES-
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC------C---ceEEEeec------------cCCccccCCCcEEeeEEEEEEecC
Confidence 5679999999 889999999886211 0 00111110 00000000 01114555778887
Q ss_pred --cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEE
Q 026313 102 --DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFE 143 (240)
Q Consensus 102 --dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~ie 143 (240)
|+.++.+++.+.++=+ .....++.+.||.|..+-
T Consensus 64 ~~Dl~~L~~~le~~~~fi--------dKk~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFFI--------DKKEKFLVTSDPSQIELW 99 (101)
T ss_dssp S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEE
T ss_pred cccHHHHHHHhcccceEe--------cCCceEEEEECCcceEEE
Confidence 6889999998844321 122344778999986553
No 180
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=94.94 E-value=0.11 Score=35.86 Aligned_cols=28 Identities=43% Similarity=0.657 Sum_probs=22.8
Q ss_pred eEEEEecCccccHHHHHHhcCCeeeeee
Q 026313 156 QVMLRVGDLGRSIKFYEKALGMKLLRTV 183 (240)
Q Consensus 156 hv~l~~~d~~~~~~fy~~~lG~~~~~~~ 183 (240)
+-++.+.|-+...+||+++|||++....
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EE 30 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEE 30 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEE
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeecc
Confidence 3478999999999999999999998764
No 181
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=94.58 E-value=0.024 Score=38.62 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.8
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeee
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRT 182 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~ 182 (240)
.+.|..+.|+|++++++||.++||.+..+.
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRs 33 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRS 33 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccc
Confidence 367999999999999999999999998654
No 182
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=93.94 E-value=0.35 Score=34.05 Aligned_cols=27 Identities=19% Similarity=0.462 Sum_probs=23.0
Q ss_pred EEEe-cCccccHHHHHHhcCCeeeeeec
Q 026313 158 MLRV-GDLGRSIKFYEKALGMKLLRTVD 184 (240)
Q Consensus 158 ~l~~-~d~~~~~~fy~~~lG~~~~~~~~ 184 (240)
.|.+ .|.+++.+||+++||+++.....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~ 31 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTR 31 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEE
Confidence 3556 89999999999999999987653
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=92.35 E-value=0.41 Score=34.40 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=47.7
Q ss_pred CceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCCceeEEEEEEecCCcc----cccCcceeEEEE
Q 026313 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVNT 228 (240)
Q Consensus 153 ~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~g~g~~Hiaf 228 (240)
.+.+|.+.+++.++...|+ ..|||+...+- .+....+ ++-|+ ..+.++..++... ..+|+|+-=+||
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~h--rsk~v~l--~rQG~----I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARH--RSKDVTL--YRQGD----INFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCE--CCCSEEE--EEETT----EEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEec--CCcceEE--EEeCC----EEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 3678999999988888888 56999998753 2222223 33232 4444444332210 235889999999
Q ss_pred cCCCccccc
Q 026313 229 SPSGSISNY 237 (240)
Q Consensus 229 ~v~di~~~~ 237 (240)
.|+|...+|
T Consensus 80 rV~Da~~A~ 88 (139)
T PF14696_consen 80 RVDDAAAAY 88 (139)
T ss_dssp EES-HHHHH
T ss_pred EeCCHHHHH
Confidence 999986654
No 184
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=0.82 Score=32.74 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.7
Q ss_pred EEec-CccccHHHHHHhcCCeeeeeecCCC
Q 026313 159 LRVG-DLGRSIKFYEKALGMKLLRTVDKPE 187 (240)
Q Consensus 159 l~~~-d~~~~~~fy~~~lG~~~~~~~~~~~ 187 (240)
|... |.+++++||+++||.++..++..++
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d 35 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGD 35 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCc
Confidence 5556 9999999999999999999876554
No 185
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=90.98 E-value=3.1 Score=31.34 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=43.9
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEE-EEEEecCCCceeeEEe----ecCCCcceeEEEEEeccCCccccCCCCcee
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKL-LRKRDVPEEKYSNAFL----GFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~-~~~~~~~~~~~~~~~l----~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~ 95 (240)
-..++||+++|++.+.+.+|-+..+..-. ..+...++......-+ .+++. .--+++|.++.. ...+..|+-|
T Consensus 32 ~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~-~I~~vELP~P~~--K~Yp~eGWEH 108 (185)
T PF06185_consen 32 QYEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGW-SIDCVELPYPKD--KRYPQEGWEH 108 (185)
T ss_dssp T-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTE-EEEEEEEE---S--S--SS-EEEE
T ss_pred ccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCe-eEEEEEeCCCCC--CCCCCCCceE
Confidence 35699999999999999999998775543 3333333322222211 22222 223467765543 2234569999
Q ss_pred EEEEeCc-HHHHHHH
Q 026313 96 FAIATED-VYKLVEN 109 (240)
Q Consensus 96 i~~~v~d-l~~~~~~ 109 (240)
|-|.++. .+...++
T Consensus 109 IE~Vip~~~~~~~~~ 123 (185)
T PF06185_consen 109 IEFVIPSDAQTLLEQ 123 (185)
T ss_dssp EEEE--S-GGGHHHH
T ss_pred EEEEecCCHHHHHHH
Confidence 9999873 3334434
No 186
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=88.51 E-value=0.22 Score=34.62 Aligned_cols=29 Identities=41% Similarity=0.500 Sum_probs=23.8
Q ss_pred ceeEEEEecCccccHHHHHHhcCCeeeeee
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTV 183 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~ 183 (240)
...|.|.|.|++++.+||+ .|||+.-...
T Consensus 4 mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~ 32 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYT-ALGFKFNPQF 32 (133)
T ss_pred EEEEecchhhHHHHHHHHH-HhCcccCCCc
Confidence 4578899999999999995 5999875443
No 187
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=87.83 E-value=0.46 Score=39.40 Aligned_cols=28 Identities=39% Similarity=0.619 Sum_probs=25.4
Q ss_pred CCceeEEEEecCccccHHHHHHhcCCee
Q 026313 152 EPLCQVMLRVGDLGRSIKFYEKALGMKL 179 (240)
Q Consensus 152 ~~~~hv~l~~~d~~~~~~fy~~~lG~~~ 179 (240)
.+..||+|.|.|+++|.+||+++|++..
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 4578999999999999999999988885
No 188
>PRK11700 hypothetical protein; Provisional
Probab=86.48 E-value=7.2 Score=29.40 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=45.6
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEE-EEEEecCCCceeeEEeecCCC-----cceeEEEEEeccCCccccCCCCce
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKL-LRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFG 94 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~-~~~~~~~~~~~~~~~l~~g~~-----~~~~~l~l~~~~~~~~~~~~~g~~ 94 (240)
-..++||+++|++.+.+.+|-+..+..-. ..+...++. -.+.+.+... ..--+++|.++.. ...+..|+-
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWE 112 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGR--PICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWE 112 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCce
Confidence 35689999999999999999887664322 222222222 2333332211 1223456665533 223556999
Q ss_pred eEEEEeC
Q 026313 95 HFAIATE 101 (240)
Q Consensus 95 ~i~~~v~ 101 (240)
||-+.++
T Consensus 113 HIElVlp 119 (187)
T PRK11700 113 HIELVLP 119 (187)
T ss_pred EEEEEec
Confidence 9999987
No 189
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=85.63 E-value=8.9 Score=27.74 Aligned_cols=74 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEE-EEEEecCCCceeeEEeecCCC-----cceeEEEEEeccCCccccCCCCceeEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKL-LRKRDVPEEKYSNAFLGFGPE-----QSHFVVELTYNYGVTSYDIGTGFGHFA 97 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~-~~~~~~~~~~~~~~~l~~g~~-----~~~~~l~l~~~~~~~~~~~~~g~~~i~ 97 (240)
++||+++|++.+.+.+|-+..+..-. ..+...++. -.+.+.+... ..--+++|.++.. ...+..|+-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGR--PI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGR--PIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCe--eEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEE
Confidence 68999999999999999987664322 222222222 2333332211 1223456655432 223556999999
Q ss_pred EEeC
Q 026313 98 IATE 101 (240)
Q Consensus 98 ~~v~ 101 (240)
+.++
T Consensus 78 ~Vlp 81 (149)
T cd07268 78 IVIP 81 (149)
T ss_pred EEec
Confidence 9987
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=79.15 E-value=1 Score=30.25 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=9.6
Q ss_pred ceeEEEEecCccccHHHHHHhcC
Q 026313 154 LCQVMLRVGDLGRSIKFYEKALG 176 (240)
Q Consensus 154 ~~hv~l~~~d~~~~~~fy~~~lG 176 (240)
+..+.|+|+| +++.+||.++||
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp E-EEEEEE-T--T---S--H---
T ss_pred EEEEEEeCCC-hhHHHHHHhccc
Confidence 4568999999 889999999886
No 191
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=77.20 E-value=12 Score=25.90 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=53.6
Q ss_pred cceeeEEEEEECCHHHHHHHhhhhcCCEEEEEEec------CCCceeeEEeecCCCcceeEEEEEeccCCccccCCCCce
Q 026313 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV------PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFG 94 (240)
Q Consensus 21 i~~i~hi~l~v~d~~~a~~FY~~~lG~~~~~~~~~------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~ 94 (240)
...++-+.+.|.+.+.+.+-..+ -||.+...... ..++.....--++....+ +...+. +.....-.
T Consensus 39 t~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diN--ldYiYA-----Fv~ek~KA 110 (142)
T COG4747 39 TGDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADIN--LDYIYA-----FVTEKQKA 110 (142)
T ss_pred ccCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcC--ceeeee-----eeecCceE
Confidence 45677889999999999999988 89998654321 001100000001111111 111110 11112234
Q ss_pred eEEEEeCcHHHHHHHHHHcCCeeec
Q 026313 95 HFAIATEDVYKLVENIRAKGGNVTR 119 (240)
Q Consensus 95 ~i~~~v~dl~~~~~~l~~~G~~~~~ 119 (240)
-+-++|+|++++.+.|+++|+++..
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecC
Confidence 4678999999999999999998765
No 192
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.56 E-value=11 Score=22.41 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.4
Q ss_pred CceeEEEEeCcHHHHHHHHHHcCCee
Q 026313 92 GFGHFAIATEDVYKLVENIRAKGGNV 117 (240)
Q Consensus 92 g~~~i~~~v~dl~~~~~~l~~~G~~~ 117 (240)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45668899999999999999999875
No 193
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=67.05 E-value=19 Score=23.07 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC
Q 026313 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (240)
Q Consensus 102 dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~ 149 (240)
..+++.++|.+.|+.+..- ....++. +-+...|.+|..+++.-.+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~v-e~~~~g~-yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV-EFDDDGC-YEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE-EEcCCCE-EEEEEEECCCCEEEEEEcCC
Confidence 5888999999999965432 2213333 33778999999999986653
No 194
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.21 E-value=19 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceeEEEEe--CcHHHHHHHHHHcCCeeecC
Q 026313 93 FGHFAIAT--EDVYKLVENIRAKGGNVTRE 120 (240)
Q Consensus 93 ~~~i~~~v--~dl~~~~~~l~~~G~~~~~~ 120 (240)
...+.|++ +|.+.+.+.|+++|+++..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 33455555 47889999999999988764
No 195
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=56.23 E-value=16 Score=30.11 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCceeEEEEe------CcHHHHHHHHHHcCCeee
Q 026313 89 IGTGFGHFAIAT------EDVYKLVENIRAKGGNVT 118 (240)
Q Consensus 89 ~~~g~~~i~~~v------~dl~~~~~~l~~~G~~~~ 118 (240)
.|..++|+.+.| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 556799999999 999999999999999876
No 196
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.19 E-value=44 Score=20.94 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCC-ceEEEEEECCCCCEE
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGG-TTHIAFVKDPDGYIF 142 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~~DPdG~~i 142 (240)
+..+.+-|.+.|+.+........++ ....||+.|++|..+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 7778889999999875432222222 122488899999876
No 197
>PRK10148 hypothetical protein; Provisional
Probab=55.84 E-value=12 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.681 Sum_probs=20.9
Q ss_pred EEEe-cCccccHHHHHHhcCCeeeeee
Q 026313 158 MLRV-GDLGRSIKFYEKALGMKLLRTV 183 (240)
Q Consensus 158 ~l~~-~d~~~~~~fy~~~lG~~~~~~~ 183 (240)
-|.. .+.+++.+||+++||.++...+
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~ 32 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKI 32 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEE
Confidence 3445 4899999999999999887654
No 198
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=46.18 E-value=5.8 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=20.5
Q ss_pred CcceeeEEEEEECCHHHHHHHhhhhcC
Q 026313 20 DKRRFLHAVYRVGDLDRTIKFYTECFG 46 (240)
Q Consensus 20 ~i~~i~hi~l~v~d~~~a~~FY~~~lG 46 (240)
.+..++-..+.+++.++..+||...|-
T Consensus 8 gigp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 8 GIGPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CcCccccCCCccccccchhHHHHHHHH
Confidence 444556667777999999999998663
No 199
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.10 E-value=44 Score=21.45 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=21.9
Q ss_pred ceeEEEEeCc----HHHHHHHHHHcCCeeec
Q 026313 93 FGHFAIATED----VYKLVENIRAKGGNVTR 119 (240)
Q Consensus 93 ~~~i~~~v~d----l~~~~~~l~~~G~~~~~ 119 (240)
...+.++|+| ++.+.+.|++.|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3456788888 99999999999998754
No 200
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=43.89 E-value=1e+02 Score=20.94 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEE--ECCCCCEE--EEEEcCCCCCCceeEEEEecCccccHHHHH
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFV--KDPDGYIF--ELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~--~DPdG~~i--el~~~~~~~~~~~hv~l~~~d~~~~~~fy~ 172 (240)
.+.+.+.++|++.++-.+... ..+++ ...+|+ .+..|..+ |+.-.. ..+-..+.+.+.+.+-+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~~-~~~~~-~~~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIASG-KVDNG-QKFFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEEE-ECTT--EEEEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEecC-CCCcc-ccEEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 578999999999998765422 22222 333444 66666443 443332 2346678899999977666653
No 201
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.46 E-value=1.4e+02 Score=21.64 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=51.8
Q ss_pred EECCHHHHHHHhhhhcCC-EEEEEEecC-------CCceeeEEeecCCCcceeEEEEEeccCCccccCCCCceeEEEEe-
Q 026313 30 RVGDLDRTIKFYTECFGM-KLLRKRDVP-------EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT- 100 (240)
Q Consensus 30 ~v~d~~~a~~FY~~~lG~-~~~~~~~~~-------~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~~i~~~v- 100 (240)
.-.+.+++.+||.++|-= ++..-...+ .+..-.+.+.++... .+.+.. .....+... ..++|.|
T Consensus 12 F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~---f~~ld~-g~~~~f~fn---eA~S~~v~ 84 (151)
T COG3865 12 FDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQS---FMALDG-GPNTSFKFN---EAFSFQVA 84 (151)
T ss_pred ECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeE---EEEEcC-CCCcCCCcC---ccEEEEEE
Confidence 338999999999998842 222111111 122333444443211 112211 111112211 1244444
Q ss_pred -Cc---HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 101 -ED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 101 -~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+| +|.+..+|...|... .....++|--|..+.|+-.
T Consensus 85 ~~~q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 85 CDDQEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred cCCHHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 44 777888888887521 1126789999999988743
No 202
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=37.51 E-value=73 Score=19.05 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.6
Q ss_pred eEEEEeCcHHHHHHHHHHcCCee
Q 026313 95 HFAIATEDVYKLVENIRAKGGNV 117 (240)
Q Consensus 95 ~i~~~v~dl~~~~~~l~~~G~~~ 117 (240)
.+-+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 34556688889999999999876
No 203
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.71 E-value=1.2e+02 Score=19.25 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCC-ceEEEEEECCCCCEE
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGG-TTHIAFVKDPDGYIF 142 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~~DPdG~~i 142 (240)
+..+...|.+.|+.+........+. ....+|++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 6778888999999875432222221 222488999999876
No 204
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=35.42 E-value=1.1e+02 Score=19.68 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=16.9
Q ss_pred EEEECCHHHHHHHhhhhcCCEEEEE
Q 026313 28 VYRVGDLDRTIKFYTECFGMKLLRK 52 (240)
Q Consensus 28 ~l~v~d~~~a~~FY~~~lG~~~~~~ 52 (240)
.....+=..|.++|++ |||+...+
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344577889999997 99998754
No 205
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.55 E-value=2e+02 Score=21.54 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=43.6
Q ss_pred ceeeEEEEEECCHHHHHHHhhhhc--CCEEEEEEecCCCceeeEEeecCCC--cce---eEEEEEeccCCccccCCCCce
Q 026313 22 RRFLHAVYRVGDLDRTIKFYTECF--GMKLLRKRDVPEEKYSNAFLGFGPE--QSH---FVVELTYNYGVTSYDIGTGFG 94 (240)
Q Consensus 22 ~~i~hi~l~v~d~~~a~~FY~~~l--G~~~~~~~~~~~~~~~~~~l~~g~~--~~~---~~l~l~~~~~~~~~~~~~g~~ 94 (240)
..++||+|+|.+.+-+..|-.-.+ |-.++.. -.++. ..+.+.+... -.+ -++++.++.. ...+-.|+-
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n-~iNGR--pI~li~l~~Pl~v~~w~id~iELP~P~~--K~YP~egWE 112 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSEN-LINGR--PICLIKLHQPLQVAHWQIDIIELPYPKN--KRYPHEGWE 112 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhh-hcCCc--eEEEEEcCCcceecceEEEEEEccCCcC--CCCCCcCce
Confidence 568999999999888877765443 2222211 11121 2333333211 011 1345544332 222446999
Q ss_pred eEEEEeC-cHHHHHHH
Q 026313 95 HFAIATE-DVYKLVEN 109 (240)
Q Consensus 95 ~i~~~v~-dl~~~~~~ 109 (240)
||-|..+ +.+++..+
T Consensus 113 HIEiVlP~~peel~~~ 128 (185)
T COG3102 113 HIEIVLPGDPEELNAR 128 (185)
T ss_pred eEEEEcCCChHHHHHH
Confidence 9999987 44444333
No 206
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=34.48 E-value=1.9e+02 Score=21.44 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=46.5
Q ss_pred EEEEeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCC------CEEEEEEc----------CCCCC---Ccee
Q 026313 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDG------YIFELIQR----------GPTPE---PLCQ 156 (240)
Q Consensus 96 i~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG------~~iel~~~----------~~~~~---~~~h 156 (240)
+=+.|.|.+.+.++|++.|........ ... .||..|++ -.+.+-+. +.... .-..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~-----q~D-~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF-----QHD-IYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc-----eEE-EeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 346678999999999999965432111 001 33333332 11222211 11111 1123
Q ss_pred EEEEecCccccHHHHHHhcCCeeeeee
Q 026313 157 VMLRVGDLGRSIKFYEKALGMKLLRTV 183 (240)
Q Consensus 157 v~l~~~d~~~~~~fy~~~lG~~~~~~~ 183 (240)
+...+.|.+.+.+.+. .||+.+...+
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~v 105 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYEV 105 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEEE
Confidence 5677899999999996 6999985544
No 207
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=40 Score=26.30 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=22.6
Q ss_pred CHHHHHHHhhhhcCCEEEEEEecCCCceeeEEeecCC
Q 026313 33 DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP 69 (240)
Q Consensus 33 d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~g~ 69 (240)
|..++..||.+.||+++..- .+.....+|....+
T Consensus 146 ~~~e~a~wy~dyLGleie~~---hgevikfiFTnIdp 179 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNIDP 179 (246)
T ss_pred ccHHHHHHHHHhcCceeeec---cCceEEEEEeccCC
Confidence 67888999999999998642 12223445554443
No 208
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=31.02 E-value=1.5e+02 Score=20.84 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 026313 103 VYKLVENIRAKGGNVTREP 121 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~ 121 (240)
-.++.+.|+.+|+.+....
T Consensus 38 g~aL~~~LR~~GYaV~e~~ 56 (121)
T PF07283_consen 38 GQALENALRAKGYAVIEDD 56 (121)
T ss_pred HHHHHHHHHhcCcEEEecC
Confidence 4567899999999987643
No 209
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=1.3e+02 Score=23.65 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=18.5
Q ss_pred ecCccccHHHHHHhcCCeeee
Q 026313 161 VGDLGRSIKFYEKALGMKLLR 181 (240)
Q Consensus 161 ~~d~~~~~~fy~~~lG~~~~~ 181 (240)
..|+.++..||.+.||+++..
T Consensus 144 sa~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hhccHHHHHHHHHhcCceeee
Confidence 468889999999999999865
No 210
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=30.69 E-value=64 Score=21.05 Aligned_cols=29 Identities=10% Similarity=0.376 Sum_probs=20.8
Q ss_pred ccHHHHHHhcCCeeeeeecCCCcceeEEE
Q 026313 166 RSIKFYEKALGMKLLRTVDKPEYKYTLAM 194 (240)
Q Consensus 166 ~~~~fy~~~lG~~~~~~~~~~~~~~~~~~ 194 (240)
.+.+|+++-||+.+...-...+.+..+.|
T Consensus 48 PtQ~Ff~~~~Glpl~M~PNfed~SC~~~F 76 (86)
T PF13225_consen 48 PTQTFFKEEFGLPLTMEPNFEDFSCQMIF 76 (86)
T ss_pred chHHHHHhccCCceEecCCCcCcEEEEEc
Confidence 35799999999999876555555555443
No 211
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.56 E-value=1e+02 Score=18.55 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=19.4
Q ss_pred CceeEEEEeCc---HHHHHHHHHHcCCee
Q 026313 92 GFGHFAIATED---VYKLVENIRAKGGNV 117 (240)
Q Consensus 92 g~~~i~~~v~d---l~~~~~~l~~~G~~~ 117 (240)
....+.+++.+ ++++.+.|++.|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 34456677754 888999999999864
No 212
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.49 E-value=1e+02 Score=18.13 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=16.6
Q ss_pred EEEEeCc---HHHHHHHHHHcCCeee
Q 026313 96 FAIATED---VYKLVENIRAKGGNVT 118 (240)
Q Consensus 96 i~~~v~d---l~~~~~~l~~~G~~~~ 118 (240)
+.+.+.+ ++.+.++|++.|+++.
T Consensus 47 i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 47 LTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 3444444 5689999999998764
No 213
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.21 E-value=94 Score=23.23 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC-----CCCCceeEEEEecCccccHHHHHHhc
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~-----~~~~~~hv~l~~~d~~~~~~fy~~~l 175 (240)
+.++++.+...+.-.--..+..-.-.|.+. +.+.++||..+.+..... +|+.-+|+.+..++-=++.++|++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~Gi-F~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEGI-FDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecceE-EEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 346666666554432111111111135554 788999999888876653 34556778888888778888888777
Q ss_pred CCeeeee
Q 026313 176 GMKLLRT 182 (240)
Q Consensus 176 G~~~~~~ 182 (240)
||....+
T Consensus 157 gWVa~yt 163 (181)
T COG1791 157 GWVAIYT 163 (181)
T ss_pred Cceeeec
Confidence 7776544
No 214
>PTZ00330 acetyltransferase; Provisional
Probab=29.46 E-value=82 Score=21.98 Aligned_cols=26 Identities=12% Similarity=0.456 Sum_probs=18.7
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEEEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~~~ 52 (240)
+..+.+.++ +.+.+||++ +||+....
T Consensus 116 ~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 116 CYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 445555553 579999987 99997754
No 215
>PRK00969 hypothetical protein; Provisional
Probab=28.78 E-value=1.3e+02 Score=26.66 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC------CCCCceeEEEEecCccccHHHHHHhc
Q 026313 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (240)
Q Consensus 102 dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~------~~~~~~hv~l~~~d~~~~~~fy~~~l 175 (240)
.++++.+.|++.|+....+....++ ..+.-++|. +.+++..... .+..+..|.|--.+..++..||+++.
T Consensus 325 t~~eA~~~~~~~gIel~~eg~~~dd---aVVV~Q~P~-~TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 325 TLKEAEELLEKLGIELEKEGYDGDD---AVVVEQTPE-TTLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred CHHHHHHHHHhCCcEEEecCCCCCC---cEEEecCCc-hHHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc
Confidence 4788999999999988764322222 112235553 3333333221 23468888998999999999999999
Q ss_pred CCeeeee
Q 026313 176 GMKLLRT 182 (240)
Q Consensus 176 G~~~~~~ 182 (240)
|+.....
T Consensus 401 GL~~~~V 407 (508)
T PRK00969 401 GLKTKPV 407 (508)
T ss_pred CCccccc
Confidence 9987654
No 216
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=24.45 E-value=54 Score=16.91 Aligned_cols=18 Identities=22% Similarity=0.792 Sum_probs=13.4
Q ss_pred EECCHHHHHHHhhhhcCC
Q 026313 30 RVGDLDRTIKFYTECFGM 47 (240)
Q Consensus 30 ~v~d~~~a~~FY~~~lG~ 47 (240)
...|.++++.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 346899999999997744
No 217
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=24.43 E-value=1.1e+02 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=20.8
Q ss_pred eEEEEEEC-CHHHHHHHhhhhcCCEEEEEE
Q 026313 25 LHAVYRVG-DLDRTIKFYTECFGMKLLRKR 53 (240)
Q Consensus 25 ~hi~l~v~-d~~~a~~FY~~~lG~~~~~~~ 53 (240)
..+.+.|+ +=+.++.||++ +||+.....
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~ 155 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIR 155 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeee
Confidence 45666665 44499999998 999987654
No 218
>PRK10562 putative acetyltransferase; Provisional
Probab=24.26 E-value=1.3e+02 Score=21.01 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=17.3
Q ss_pred CCHHHHHHHhhhhcCCEEEEEEec
Q 026313 32 GDLDRTIKFYTECFGMKLLRKRDV 55 (240)
Q Consensus 32 ~d~~~a~~FY~~~lG~~~~~~~~~ 55 (240)
.+=..+.+||++ +||+.......
T Consensus 106 ~~N~~s~~~y~k-~Gf~~~~~~~~ 128 (145)
T PRK10562 106 QKNQRAVNFYHA-QGFRIVDSAWQ 128 (145)
T ss_pred cCChHHHHHHHH-CCCEEcccccc
Confidence 344679999997 99998765443
No 219
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=97 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=17.8
Q ss_pred eEEEEeCcHHHHHHHHHHcCCee
Q 026313 95 HFAIATEDVYKLVENIRAKGGNV 117 (240)
Q Consensus 95 ~i~~~v~dl~~~~~~l~~~G~~~ 117 (240)
||-.+-+|++.+.+.|+++|..+
T Consensus 104 hiLVr~~dLekAv~~L~eaGhev 126 (128)
T COG3603 104 HILVREEDLEKAVKALEEAGHEV 126 (128)
T ss_pred eEEEehhhHHHHHHHHHHcCCcc
Confidence 34444468999999999999865
No 220
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=23.50 E-value=1.7e+02 Score=19.61 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEE
Q 026313 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~ 146 (240)
.|+.++..+|.+.|+. ..+.|++|+..||-.
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgt 51 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGT 51 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCC
Confidence 4688889999988853 457889999888853
No 221
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=23.12 E-value=1.2e+02 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=28.3
Q ss_pred ECCCCCEEEEEEcCCCCCCceeEEEEecCccccHHHHHH
Q 026313 135 KDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEK 173 (240)
Q Consensus 135 ~DPdG~~iel~~~~~~~~~~~hv~l~~~d~~~~~~fy~~ 173 (240)
.||++..+|+.+++. -..+.|.+.|-+.+..||..
T Consensus 232 ~DpEnR~lEihSpdg----~~tliLR~kdsa~A~~Wf~A 266 (506)
T KOG3551|consen 232 ADPENRQLEIHSPDG----RHTLILRAKDSAEADSWFEA 266 (506)
T ss_pred CCcccceeeeeCCCC----cceEEEEccCcHHHHHHHHH
Confidence 799999999987754 44577888999999998864
No 222
>PHA02754 hypothetical protein; Provisional
Probab=22.85 E-value=1.8e+02 Score=17.33 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEc
Q 026313 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (240)
Q Consensus 103 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~ 147 (240)
+.++.++|.++|+-+.+-......|.. ..+...||..+++.+.
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdk--IVVi~aD~I~i~ls~T 62 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDK--IVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCE--EEEEEcceEEEEEEee
Confidence 456677788888765443222223332 3445566777776553
No 223
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=22.85 E-value=3.4e+02 Score=20.50 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=51.5
Q ss_pred EEEEeCcHHHHHHHHHHcCCeeecCCccC------CCC----ceEEEEEECCCCCEEEEEEc-CC---CCCCceeEEEEe
Q 026313 96 FAIATEDVYKLVENIRAKGGNVTREPGPL------KGG----TTHIAFVKDPDGYIFELIQR-GP---TPEPLCQVMLRV 161 (240)
Q Consensus 96 i~~~v~dl~~~~~~l~~~G~~~~~~~~~~------~~g----~~~~~~~~DPdG~~iel~~~-~~---~~~~~~hv~l~~ 161 (240)
+=+.+.|.+...++|++.|.......... +.+ ....+.++.-+|+...+.-- +. .......+.+.+
T Consensus 6 vK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v 85 (178)
T COG1437 6 VKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEV 85 (178)
T ss_pred EEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEe
Confidence 34667789999999999987654321111 110 11224444222222222222 11 123467788899
Q ss_pred cCccccHHHHHHhcCCeeeeee
Q 026313 162 GDLGRSIKFYEKALGMKLLRTV 183 (240)
Q Consensus 162 ~d~~~~~~fy~~~lG~~~~~~~ 183 (240)
.|++++..-+ +.|||.....+
T Consensus 86 ~D~~~~~~il-~~LGF~~~~~V 106 (178)
T COG1437 86 SDVEKALEIL-KRLGFKEVAVV 106 (178)
T ss_pred CCHHHHHHHH-HHcCCceeeEE
Confidence 9999999999 56999987654
No 224
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.45 E-value=1.1e+02 Score=18.21 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.0
Q ss_pred CcHHHHHHHHHHcCCee
Q 026313 101 EDVYKLVENIRAKGGNV 117 (240)
Q Consensus 101 ~dl~~~~~~l~~~G~~~ 117 (240)
+|.+.+.+.|+++|+++
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 46889999999999853
No 225
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.35 E-value=82 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=16.9
Q ss_pred eeeEEEEEEC-CHHHHHHHhhhhcCCE
Q 026313 23 RFLHAVYRVG-DLDRTIKFYTECFGMK 48 (240)
Q Consensus 23 ~i~hi~l~v~-d~~~a~~FY~~~lG~~ 48 (240)
++..+.+.|. +-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 4555666655 44558999987 8875
No 226
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=21.67 E-value=5.2e+02 Score=22.15 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=63.9
Q ss_pred EEEECCCCCEEEEEEcCCCCCCceeEEEEecCccccHHHHHHhcCCeeeeeecCCCcceeEEEeccccCC---------c
Q 026313 132 AFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------Q 202 (240)
Q Consensus 132 ~~~~DPdG~~iel~~~~~~~~~~~hv~l~~~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 202 (240)
=+|..+|| .+-+-|..+++.--+|..+..-+..+...-.+.++|+.+.+..- -.....+-.++..... .
T Consensus 249 E~Fv~~dg-~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~~-~~p~vMvNlLG~~~~~~~~~~~l~~p 326 (375)
T COG0026 249 EFFVTPDG-ELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTTL-LSPSVMVNLLGDDVPPDDVKAVLALP 326 (375)
T ss_pred EEEEECCC-cEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCccc-cCceEEEEecCCCCchhhhHHHHhCC
Confidence 34677777 55566777888888999999889999999999999999876321 1223344555532110 0
Q ss_pred eeEEEEEEecCCcccccCcceeEEEEcCCCc
Q 026313 203 TTVLELTYNYGVTEYTKGNAYAQVNTSPSGS 233 (240)
Q Consensus 203 ~~~l~~~~~~~~~~~~~g~g~~Hiaf~v~di 233 (240)
...+ +-+++.....|+-++|+.+.-.|.
T Consensus 327 ~~~l---H~YGK~e~R~gRKmGHvn~~~~~~ 354 (375)
T COG0026 327 GAHL---HWYGKAEARPGRKMGHVNVLGSDS 354 (375)
T ss_pred CCEE---EEecCccCCCCCeeeeEEeecCCH
Confidence 1122 233544345677899999998884
No 227
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=21.50 E-value=2.3e+02 Score=25.21 Aligned_cols=77 Identities=17% Similarity=0.317 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEEEcCC------CCCCceeEEEEecCccccHHHHHHhc
Q 026313 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (240)
Q Consensus 102 dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~~~~~------~~~~~~hv~l~~~d~~~~~~fy~~~l 175 (240)
.++++.+.+++.|+....+... + ...++.-++|. ..+++..... .+..+..|.|--.+..++..||+++.
T Consensus 322 t~~eA~~~~~~~gIe~~~dG~~--~-dDaVVV~Q~P~-~TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 322 TQEEAEELLEELGIELEKEGVD--G-DDAVVVKQEPP-YTLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred CHHHHHHHHHhcCcEEeecCCC--C-CCeEEEecCCc-hHHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc
Confidence 4788999999999987543211 1 11112235552 3333333321 23568889999999999999999999
Q ss_pred CCeeeee
Q 026313 176 GMKLLRT 182 (240)
Q Consensus 176 G~~~~~~ 182 (240)
|+.....
T Consensus 398 GL~~~~V 404 (503)
T TIGR03268 398 GLKTKPV 404 (503)
T ss_pred CCccccc
Confidence 9987654
No 228
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=21.10 E-value=1.2e+02 Score=21.57 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=21.1
Q ss_pred eeEEEEEECCHHHHHHHhhhhcCCEEE
Q 026313 24 FLHAVYRVGDLDRTIKFYTECFGMKLL 50 (240)
Q Consensus 24 i~hi~l~v~d~~~a~~FY~~~lG~~~~ 50 (240)
-+|+.+..-|..+..+-..+.||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 689999999999999999999999875
No 229
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=20.74 E-value=1.6e+02 Score=19.24 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.6
Q ss_pred CceeEEEEeCc---HHHHHHHHHHcCCeeec
Q 026313 92 GFGHFAIATED---VYKLVENIRAKGGNVTR 119 (240)
Q Consensus 92 g~~~i~~~v~d---l~~~~~~l~~~G~~~~~ 119 (240)
+...++|.|++ ++++.++|++.|+.+..
T Consensus 50 a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~d 80 (91)
T PF00585_consen 50 ARVLVGIEVPDAEDLEELIERLKALGYPYED 80 (91)
T ss_dssp SEEEEEEE-SSTHHHHHHHHHHTSSS-EEEC
T ss_pred eeEEEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 56668888874 67899999999998754
No 230
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=20.52 E-value=1.9e+02 Score=20.17 Aligned_cols=47 Identities=6% Similarity=0.059 Sum_probs=28.7
Q ss_pred EeCcHHHHHHHHHHcCCeeecCCccCCCCceEEEEEECCCCCEEEEE
Q 026313 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (240)
Q Consensus 99 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~DPdG~~iel~ 145 (240)
++.+....+++|++.|...+......-..+...+...|++|...+-.
T Consensus 23 Qik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~ 69 (118)
T PRK10234 23 QISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTL 69 (118)
T ss_pred HHHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeE
Confidence 44567788899999986433322111112223356799999888754
No 231
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=20.21 E-value=1.9e+02 Score=20.44 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.0
Q ss_pred eeeEEEEEEC-CHHHHHHHhhhhcCCEEEEE
Q 026313 23 RFLHAVYRVG-DLDRTIKFYTECFGMKLLRK 52 (240)
Q Consensus 23 ~i~hi~l~v~-d~~~a~~FY~~~lG~~~~~~ 52 (240)
++..+.+.|. +=.++++||++ +||+....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~ 141 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGT 141 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEee
Confidence 4566666653 45678999986 99997654
No 232
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=20.19 E-value=1e+02 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=18.8
Q ss_pred eeeEEEEEEC-CHHHHHHHhhhhcCCEEE
Q 026313 23 RFLHAVYRVG-DLDRTIKFYTECFGMKLL 50 (240)
Q Consensus 23 ~i~hi~l~v~-d~~~a~~FY~~~lG~~~~ 50 (240)
++..+.+.+. +-..+.+||++ +||...
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 4555666653 33479999997 999754
Done!