BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026314
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 142/235 (60%), Gaps = 24/235 (10%)
Query: 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 63
QG+AE+ G +T +I G + E ++ G P+ TL ++++N+
Sbjct: 157 QGDAESDGAQLVFHTPLIAGRVR--------PEGGFELDFGGAEPM----TLSCRVLINA 204
Query: 64 AGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTL 123
AGL AP LA+R G+ IPP Y +G YF+LA APF LIYP+P+ GLGVH+TL
Sbjct: 205 AGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR--APFSRLIYPVPQHAGLGVHLTL 262
Query: 124 DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSY 183
DL GQ KFGPD EWI DY+++ RA+ FY +R Y+P L DG+L P Y
Sbjct: 263 DLGGQAKFGPDTEWI----------ATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGY 312
Query: 184 AGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238
GIRPK+SGP + DF I G +HGV GLVNL+GIESPGLT+S+AIAE A+
Sbjct: 313 TGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARL 367
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 34 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCY 93
+S+ ++LR W +P PE P + + + L + + + + Y RG +
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAM------ASRYERGLF 156
Query: 94 FSLANTKVAPFKHLIYPIPEDGGLGVHVT 122
A +PF H IY I DG + VT
Sbjct: 157 DPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>pdb|3FZ5|A Chain A, Crystal Structure Of Possible
2-Hydroxychromene-2-Carboxylate Isomerase From
Rhodobacter Sphaeroides
pdb|3FZ5|B Chain B, Crystal Structure Of Possible
2-Hydroxychromene-2-Carboxylate Isomerase From
Rhodobacter Sphaeroides
pdb|3FZ5|C Chain C, Crystal Structure Of Possible
2-Hydroxychromene-2-Carboxylate Isomerase From
Rhodobacter Sphaeroides
pdb|3FZ5|D Chain D, Crystal Structure Of Possible
2-Hydroxychromene-2-Carboxylate Isomerase From
Rhodobacter Sphaeroides
Length = 202
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 22/94 (23%)
Query: 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVV 61
W++ ++ + T F+ ++Y S+ + + + VS L PE+ L P+ ++
Sbjct: 99 WIEAQSPDAATAFAQR-----------VFDLYFSDRLDTASPEAVSRLGPEVGLEPEALL 147
Query: 62 NSAGLSAPALAK--RFIGLDNVFIPPAYYARGCY 93
AG++ PAL + R IG D V ARG +
Sbjct: 148 --AGIADPALKETVRKIGEDAV-------ARGIF 172
>pdb|3CJ8|A Chain A, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|B Chain B, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
pdb|3CJ8|C Chain C, Crystal Structure Of
2,3,4,5-Tetrahydropyridine-2-Carboxylate N-
Succinyltransferase From Enterococcus Faecalis V583
Length = 236
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGD 205
E +PE K + + + G+L +A ++P L ++ D+V++ D
Sbjct: 32 EVTFPETIKVFNNCKTGTLFGDWADVKPFLEANKEKIEDYVVEND 76
>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
Receptor
pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
Complex
pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
Parvovirus And Feline Transferrin Receptor Complex
Length = 639
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLV 214
NA + +RF + L D ++ Y + P +S P++SP V G +H +P L+
Sbjct: 541 NAEKTDRFVMK------KLNDRVMRVEYHFLSPYVS-PKESPFRHVFWGSGSHTLPALL 592
>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
Receptor
pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 640
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLV 214
NA + +RF + L D ++ Y + P +S P++SP V G +H +P L+
Sbjct: 542 NAEKTDRFVMK------KLNDRVMRVEYHFLSPYVS-PKESPFRHVFWGSGSHTLPALL 593
>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 2
pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Cryocooled 1
pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
With Iron In The N-Lobe, Room Temperature
Length = 654
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLV 214
NA + +RF + L D ++ Y + P +S P++SP V G +H +P L+
Sbjct: 556 NAEKTDRFVMK------KLNDRVMRVEYHFLSPYVS-PKESPFRHVFWGSGSHTLPALL 607
>pdb|1OKI|A Chain A, Crystal Structure Of Truncated Human Beta-B1-Crystallin
pdb|1OKI|B Chain B, Crystal Structure Of Truncated Human Beta-B1-Crystallin
Length = 210
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 1 MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLV 60
+WV G ++ G+ ++ + +G G Y+ E + R+W+ QP++ + +L
Sbjct: 132 LWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLR 191
Query: 61 VNSAGL--SAPALA 72
L S P LA
Sbjct: 192 DKQWHLEGSFPVLA 205
>pdb|1WD3|A Chain A, Crystal Structure Of Arabinofuranosidase
pdb|1WD4|A Chain A, Crystal Structure Of Arabinofuranosidase Complexed With
Arabinose
Length = 482
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 116 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR 175
G G + +D++ + G D + G D ++S+ RF + A+++ IR +
Sbjct: 194 GDGPWIMVDMENNLFSGADEGYNSG-DPSISY--RFVTAAVKGGADKW--AIRG--ANAA 246
Query: 176 DGSLQPSYAGIRPKLSG----PRQSPIDFVIQGDDTHGVPG 212
GSL Y+G RP SG ++ I I GD+++G G
Sbjct: 247 SGSLSTYYSGARPDYSGYNPMSKEGAIILGIGGDNSNGAQG 287
>pdb|3U46|L Chain L, Ch04hCH02L P212121
pdb|3U46|B Chain B, Ch04hCH02L P212121
pdb|3U4B|L Chain L, Ch04hCH02L FAB P4
Length = 215
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 57 PKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG 116
P+L+++S A +A RF G + G +F+L T+V P +Y + GG
Sbjct: 45 PRLLIHSGSTRAAGIADRFSGGGS----------GMHFTLTITRVEPEDFAVYFCQQYGG 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,980,036
Number of Sequences: 62578
Number of extensions: 355684
Number of successful extensions: 765
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)