BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026314
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12)
GN=lhgO PE=1 SV=3
Length = 422
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 39/207 (18%)
Query: 60 VVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--L 117
+++ +GL A L K +GL+ FI + RG YF LA HLIYPIP+ L
Sbjct: 196 LISCSGLMADRLVK-MLGLEPGFIICPF--RGEYFRLAPEHNQIVNHLIYPIPDPAMPFL 252
Query: 118 GVHVTLDLDGQIKFGPDVEWI---DG-------IDDTLSFL----------NRFDYSV-- 155
GVH+T +DG + GP+ +G DTL L N +
Sbjct: 253 GVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGE 312
Query: 156 --NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID---FVIQGDDTHGV 210
N+ + ++KY P L LQP AG+R + P ID FV
Sbjct: 313 MKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVT-------T 365
Query: 211 PGLVNLFGIESPGLTSSMAIAEYVAAK 237
P ++ SP TS++ I ++ +K
Sbjct: 366 PRTIHTCNAPSPAATSAIPIGAHIVSK 392
>sp|P47285|Y039_MYCGE Uncharacterized protein MG039 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG039 PE=4 SV=1
Length = 384
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLN 149
+G Y L N +I+ +P G GV V LDG I GP+ ++GI+ +
Sbjct: 231 KGQYLVLKNQNNLKINTIIFMVPTIHGKGVVVAEMLDGNILVGPNA--VEGIEKNKT--- 285
Query: 150 RFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG 209
S++ + + +K P L+ + S+AG R DFVI+ ++
Sbjct: 286 ---RSIDLDSINQIKTIGKKMVPSLQFENSIYSFAGSR----AIDIETNDFVIRTAKSN- 337
Query: 210 VPGLVNLFGIESPGLTSSMAIAE 232
P + L G++SPGLTSS AIA+
Sbjct: 338 -PNFIILGGMKSPGLTSSPAIAK 359
>sp|P75063|Y051_MYCPN Uncharacterized protein MG039 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_051 PE=4 SV=1
Length = 384
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLN 149
RG Y + N +++ +P G GV V+ LDG GP +DG+D +
Sbjct: 231 RGQYVVVTNQGELHLNSMVFMVPTIHGKGVIVSPMLDGNFLVGPTA--LDGVDKEATRYI 288
Query: 150 RFDYSVNANRAERFYPEIRKYY-PDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTH 208
D A +I K+ P L + S+AG RP ++ DF+I+ H
Sbjct: 289 TKD-------APCMLTKIGKHMVPSLNINNALISFAGSRP----IDKATNDFIIRV--AH 335
Query: 209 GVPGLVNLFGIESPGLTSSMAIAE 232
P V L G++SPGLT++ AI
Sbjct: 336 NDPDFVILGGMKSPGLTAAPAIVR 359
>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=L2hgdh PE=2 SV=1
Length = 464
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQIKFGP-------------- 133
RG Y L K K IYP+P+ LGVH T LDG I GP
Sbjct: 283 RGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLDGTIWLGPNAVLAFKREGYRPF 342
Query: 134 DVEWIDGIDDTLS--FLN----RFDYSVNANRAERFYPE----IRKYYPDLRDGSLQPSY 183
D + D ++ L F+N F Y VN F E ++K+ P++ +
Sbjct: 343 DFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDVLRGP 402
Query: 184 AGIRPK-LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237
AG+R + L DFV G ++++ SP TSS+AI+ +A +
Sbjct: 403 AGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPSPAATSSLAISRMIAEE 457
>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella
vectensis GN=v1g172254 PE=3 SV=1
Length = 456
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 34/213 (15%)
Query: 54 TLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPE 113
T+ + V+ GL + LA++ I P RG Y L K K IYP+P+
Sbjct: 242 TIKCRYVITCGGLYSDRLAEKSGCNREPRIVPF---RGDYLVLKPEKCHLVKGNIYPVPD 298
Query: 114 DGG--LGVHVTLDLDGQIKFGP--------------DVEWIDGIDDTLSF-------LNR 150
LGVH T +DG + GP D+ D + D L+F
Sbjct: 299 PNFPFLGVHFTPRMDGSVWLGPNAVLAFAREGYNLLDINLRD-LADALAFRGLRQLMFKY 357
Query: 151 FDYSVNA-----NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID-FVIQG 204
F + V N A + +++KY P + + +G+R + + +D FV G
Sbjct: 358 FSFGVGEYYRGLNHAAQV-KQLQKYIPSVTADDVVSGPSGVRAQALDRDGNLVDDFVFDG 416
Query: 205 DDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237
++++ SP TSS+AIA VA K
Sbjct: 417 GVGEIGSRVLHVRNAPSPAATSSLAIARMVADK 449
>sp|O06811|TKT_MYCTU Transketolase OS=Mycobacterium tuberculosis GN=tkt PE=1 SV=1
Length = 700
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 34 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCY 93
+S+ ++LR W +P PE P + + + L + + + + Y RG +
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAM------ASRYERGLF 156
Query: 94 FSLANTKVAPFKHLIYPIPEDGGLGVHVT 122
A +PF H IY I DG + VT
Sbjct: 157 DPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|P59956|TKT_MYCBO Transketolase OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=tkt PE=3 SV=1
Length = 700
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 34 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCY 93
+S+ ++LR W +P PE P + + + L + + + + Y RG +
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAM------ASRYERGLF 156
Query: 94 FSLANTKVAPFKHLIYPIPEDGGLGVHVT 122
A +PF H IY I DG + VT
Sbjct: 157 DPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=L2HGDH PE=2 SV=1
Length = 463
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQIKFGP-------------- 133
RG Y L K K IYP+P+ LGVH T +DG I GP
Sbjct: 282 RGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGNIWLGPNAILAFKREGYRPF 341
Query: 134 DVEWIDGIDDTLS------FLNRFDYSVNANRAERFY----PEIRKYYPDLRDGSLQPSY 183
D D +D + F Y VN F ++K+ P++ +
Sbjct: 342 DFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDVLRGP 401
Query: 184 AGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA 235
AG+R + + I DFV G ++++ SP TSS+AI+ +A
Sbjct: 402 AGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAATSSLAISGMIA 454
>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii
GN=L2HGDH PE=2 SV=1
Length = 419
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQIKFGPD 134
RG Y L K K IYP+P+ LGVH TL +DG I GP+
Sbjct: 282 RGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRMDGSIWLGPN 328
>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=l2hgdh PE=3 SV=1
Length = 446
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 41/209 (19%)
Query: 54 TLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI----Y 109
+++ K + G+++ +AK G D I P RG + F+HLI Y
Sbjct: 231 SILTKYSIVCGGMNSDRIAKVAYGNDEPSIVPF---RGSFLQFK----PEFRHLIKGNVY 283
Query: 110 PIPEDGG--LGVHVTLDLDGQIKFGPDV---------EWID-GIDDTLSFL--------- 148
P+P LGVH T ++G++ GP+ ++ D + DT+ +
Sbjct: 284 PLPNASFPFLGVHFTKRINGEVWLGPNAVLSFDREGYKFTDFNLHDTIDLIKNPGLFKLA 343
Query: 149 -NRFDYSVNA----NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVI 202
+ Y + + F ++ Y P++ L+ +G+R + I DF+
Sbjct: 344 KKHWKYGLGELYRDFNKDHFIQLLKPYMPNITVDMLEYGGSGVRSQAISKSGDLIEDFIF 403
Query: 203 QGDDTHGVPGLVNLFGIESPGLTSSMAIA 231
D VP ++++ SP TSS+AIA
Sbjct: 404 --DTPSDVP-IIHVRNSPSPAATSSLAIA 429
>sp|P46708|TKT_MYCLE Transketolase OS=Mycobacterium leprae (strain TN) GN=tkt PE=3 SV=1
Length = 699
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 34 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCY 93
+S+ ++LR W +P PE + + + L + + + + Y RG +
Sbjct: 103 LSDIESLRTWGSTTPGHPEFRHTKGVEITTGPLGQGLASAVGMAM------ASRYERGLF 156
Query: 94 FSLANTKVAPFKHLIYPIPEDGGLGVHVT 122
A +PF H IY I DG + VT
Sbjct: 157 DPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|A2Q8K8|LCL3_ASPNC Probable endonuclease lcl3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=lcl3 PE=3 SV=1
Length = 275
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 35 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL--DNVFIPPAYYAR 90
++ KNL +W + L+ TLIP LV+ + LSA L + ++ V I PAYY R
Sbjct: 24 NDPKNLLDWSAFTELR---TLIPTLVLTTGILSAFTLHRNYLRRFPTAVNITPAYYRR 78
>sp|Q1BZN5|MNMC_BURCA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain AU
1054) GN=mnmC PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 45/238 (18%)
Query: 27 GNCMNVYISESKNLR---------------NWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71
G C+ Y + + +R W + L P +V+ +AG +A
Sbjct: 391 GLCVAQYAAAGERVRLLASTCVARLERRDDTWHALDDTGATLADAPVVVLANAGDAA--- 447
Query: 72 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKF 131
R GL +V + P RG L AP P P G G V LD DG +
Sbjct: 448 --RLAGLRHVTLQPV---RGQLTLLPPGTTAPL-----PCPAIGD-GYAVPLD-DGTLLI 495
Query: 132 GPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPD---LRDGSLQPSYAGIRP 188
G E DDT + ++ N +R P + PD LR G R
Sbjct: 496 GATFE----PDDTDPAMRAAGHAENLDRVRHLLPGLIGALPDPATLRGRVAFRWVVGDRL 551
Query: 189 KLSGPRQSPIDFVI--------QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238
L GP Q D +PGL FG S GL + AE +A++
Sbjct: 552 PLIGPLADETQATANARALGGAQARDLPRMPGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|A0K2U3|MNMC_BURCH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain HI2424)
GN=mnmC PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 45/238 (18%)
Query: 27 GNCMNVYISESKNLR---------------NWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71
G C+ Y + + +R W + L P +V+ +AG +A
Sbjct: 391 GLCVAQYAAAGERVRLLASTCVARLERRDDTWHALDDTGATLADAPVVVLANAGDAA--- 447
Query: 72 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKF 131
R GL +V + P RG L AP P P G G V LD DG +
Sbjct: 448 --RLAGLRHVTLQPV---RGQLTLLPPGTTAPL-----PCPAIGD-GYAVPLD-DGTLLI 495
Query: 132 GPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPD---LRDGSLQPSYAGIRP 188
G E DDT + ++ N +R P + PD LR G R
Sbjct: 496 GATFE----PDDTDPAMRAAGHAENLDRVRHLLPGLIGALPDPATLRGRVAFRWVVGDRL 551
Query: 189 KLSGPRQSPIDFVI--------QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238
L GP Q D +PGL FG S GL + AE +A++
Sbjct: 552 PLIGPLADETQATANARALGGAQARDLPRMPGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|A9BGT9|SYC_PETMO Cysteine--tRNA ligase OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=cysS PE=3 SV=1
Length = 469
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 141 IDDTLSFLNRFDYSVNANRAER--FYPEIRKY--YPDLRDGSLQPSYAGIRPKLSGPRQS 196
+D+ +S++ + A +AE Y E+ K+ Y +L ++ G+R ++S +++
Sbjct: 123 VDEIISYIKELEEKGYAYKAENGDVYFEVEKFSRYGELSHRKVEDLKVGVRVEVSEYKKN 182
Query: 197 PIDFVIQGDDTHGVPGLVNLFGIESPG 223
P+DF + G P + +G PG
Sbjct: 183 PLDFALWKASKEGEPFWESPWGKGRPG 209
>sp|O30078|TTRA_ARCFU Tetrathionate reductase subunit A OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=ttrA PE=1 SV=1
Length = 1134
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 130 KFGPDVEWIDGID-DTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP 188
KFG V W ID +++ + +Y + R E YP R +YP + S +AGI
Sbjct: 583 KFGEPVRWGPPIDRHKVAYEDSLEYWMKKKRGENPYPAKRPWYPLTPEESYTEMFAGIAE 642
Query: 189 KLSGPRQSPIDF 200
+ P ++ I +
Sbjct: 643 EYPYPIKALIMY 654
>sp|B1K1H7|MNMC_BURCC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain MC0-3)
GN=mnmC PE=3 SV=1
Length = 643
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 74/208 (35%), Gaps = 30/208 (14%)
Query: 42 NWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKV 101
W + L P +V+ +AG +A R GL +V + P RG L
Sbjct: 421 TWHALDDTGATLADAPVVVLANAGDAA-----RLAGLRHVALQPV---RGQLTLLPPGTT 472
Query: 102 APFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAE 161
AP P P G G V LD DG + G E DDT + ++ N +R
Sbjct: 473 APL-----PCPAIGD-GYAVPLD-DGTLLIGATFE----PDDTDPAMRAAGHAENLDRVR 521
Query: 162 RFYPEIRKYYPD---LRDGSLQPSYAGIRPKLSGPRQSPIDFVI--------QGDDTHGV 210
P + PD LR G R L GP Q D +
Sbjct: 522 HLLPGLIGALPDPATLRGRVAFRWVVGDRLPLIGPLADETQATANARALGGAQARDLPRM 581
Query: 211 PGLVNLFGIESPGLTSSMAIAEYVAAKF 238
PGL FG S GL + AE +A++
Sbjct: 582 PGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=L2HGDH PE=1 SV=3
Length = 463
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 90 RGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQIKFGPD 134
RG Y L K K IYP+P+ LGVH T +DG I GP+
Sbjct: 282 RGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPN 328
>sp|Q978Z5|SYC_THEVO Cysteine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=cysS PE=3
SV=2
Length = 454
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 164 YPEIRKY--YPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIES 221
Y E+RK+ Y +L + SL AG R ++ +++P DFV+ G P + +G
Sbjct: 141 YFEVRKFKDYGELSNQSLDQIIAGYRVAVNENKRNPEDFVLWKKKKAGEPSWPSPWGEGR 200
Query: 222 PG 223
PG
Sbjct: 201 PG 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,504,683
Number of Sequences: 539616
Number of extensions: 4384394
Number of successful extensions: 9118
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9102
Number of HSP's gapped (non-prelim): 29
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)