Query 026314
Match_columns 240
No_of_seqs 132 out of 1226
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11728 hydroxyglutarate oxid 100.0 9.6E-28 2.1E-32 214.9 20.7 212 2-238 154-393 (393)
2 TIGR02352 thiamin_ThiO glycine 100.0 7.2E-28 1.6E-32 210.3 18.3 192 2-239 142-334 (337)
3 TIGR03197 MnmC_Cterm tRNA U-34 99.9 6.2E-27 1.3E-31 208.8 16.1 190 2-239 140-360 (381)
4 TIGR03377 glycerol3P_GlpA glyc 99.9 8.7E-26 1.9E-30 208.9 22.3 206 2-239 133-345 (516)
5 PRK00711 D-amino acid dehydrog 99.9 7.1E-26 1.5E-30 203.8 20.2 194 2-239 206-400 (416)
6 TIGR01373 soxB sarcosine oxida 99.9 2.1E-25 4.5E-30 200.5 21.7 194 2-239 188-383 (407)
7 PRK12409 D-amino acid dehydrog 99.9 4.4E-25 9.5E-30 198.6 19.9 202 2-239 202-404 (410)
8 PRK11259 solA N-methyltryptoph 99.9 8.6E-25 1.9E-29 194.1 20.0 198 2-239 154-358 (376)
9 PRK11101 glpA sn-glycerol-3-ph 99.9 3E-24 6.5E-29 199.7 22.7 208 2-239 154-368 (546)
10 PRK13369 glycerol-3-phosphate 99.9 1.9E-24 4.1E-29 199.3 20.9 209 2-239 160-375 (502)
11 PF01266 DAO: FAD dependent ox 99.9 1.2E-25 2.7E-30 196.6 11.5 203 2-237 152-358 (358)
12 COG0579 Predicted dehydrogenas 99.9 1.6E-24 3.5E-29 193.1 17.7 210 2-238 158-372 (429)
13 PRK12266 glpD glycerol-3-phosp 99.9 7.3E-24 1.6E-28 195.6 22.1 210 2-239 160-376 (508)
14 TIGR03329 Phn_aa_oxid putative 99.9 1.5E-24 3.2E-29 198.1 15.9 200 2-239 188-392 (460)
15 TIGR01377 soxA_mon sarcosine o 99.9 2.4E-23 5.1E-28 185.2 20.2 203 2-239 150-358 (380)
16 PLN02464 glycerol-3-phosphate 99.9 3.5E-23 7.7E-28 194.9 21.1 206 2-239 237-452 (627)
17 COG0665 DadA Glycine/D-amino a 99.9 2.8E-23 6E-28 184.9 19.0 202 2-239 161-365 (387)
18 PRK01747 mnmC bifunctional tRN 99.9 1.1E-23 2.4E-28 200.1 16.9 190 2-239 413-631 (662)
19 KOG2665 Predicted FAD-dependen 99.9 8E-24 1.7E-28 178.3 13.9 219 3-240 202-453 (453)
20 COG0578 GlpA Glycerol-3-phosph 99.9 5.5E-23 1.2E-27 186.8 20.3 208 2-239 169-384 (532)
21 KOG2844 Dimethylglycine dehydr 99.9 9.2E-23 2E-27 185.5 14.3 206 1-239 191-399 (856)
22 TIGR03364 HpnW_proposed FAD de 99.9 2.8E-22 6.2E-27 177.6 14.7 186 2-232 150-364 (365)
23 PRK13339 malate:quinone oxidor 99.9 1.3E-20 2.8E-25 172.4 16.8 218 2-238 189-449 (497)
24 TIGR01320 mal_quin_oxido malat 99.9 5.3E-20 1.1E-24 168.7 19.0 217 2-237 183-441 (483)
25 PTZ00383 malate:quinone oxidor 99.8 1.7E-20 3.8E-25 171.9 15.6 209 2-237 216-470 (497)
26 KOG2853 Possible oxidoreductas 99.8 1.4E-19 3E-24 154.2 17.0 217 1-239 247-480 (509)
27 PRK05257 malate:quinone oxidor 99.8 5.8E-19 1.3E-23 162.1 16.1 222 2-238 188-447 (494)
28 KOG2820 FAD-dependent oxidored 99.8 5.1E-18 1.1E-22 144.5 15.9 203 2-240 158-377 (399)
29 KOG0042 Glycerol-3-phosphate d 99.8 4.1E-18 8.9E-23 152.4 14.2 206 2-239 229-446 (680)
30 KOG3923 D-aspartate oxidase [A 99.6 1.8E-15 4E-20 126.9 11.1 149 56-239 183-334 (342)
31 PF06039 Mqo: Malate:quinone o 99.5 3.4E-13 7.4E-18 120.2 15.0 220 2-236 186-443 (488)
32 KOG2852 Possible oxidoreductas 99.3 4.8E-11 1E-15 100.3 13.4 202 2-239 152-361 (380)
33 TIGR02032 GG-red-SF geranylger 98.7 3.1E-06 6.8E-11 72.1 18.7 195 2-238 96-295 (295)
34 PLN02697 lycopene epsilon cycl 98.5 1.2E-05 2.5E-10 75.0 16.7 193 2-238 197-410 (529)
35 PRK06185 hypothetical protein; 98.4 2.8E-05 6.1E-10 69.9 17.8 140 2-175 113-256 (407)
36 PRK10157 putative oxidoreducta 98.4 1.7E-05 3.8E-10 72.1 15.8 57 2-75 113-170 (428)
37 TIGR01790 carotene-cycl lycope 98.3 3.1E-05 6.7E-10 69.2 16.4 76 2-98 90-166 (388)
38 PRK08773 2-octaprenyl-3-methyl 98.2 5.7E-05 1.2E-09 67.6 15.5 58 2-75 118-175 (392)
39 TIGR01988 Ubi-OHases Ubiquinon 98.1 0.00014 3.1E-09 64.5 16.0 58 2-75 111-169 (385)
40 TIGR03378 glycerol3P_GlpB glyc 98.1 8.9E-06 1.9E-10 73.3 8.0 61 2-75 268-330 (419)
41 PRK07608 ubiquinone biosynthes 98.1 0.00013 2.8E-09 65.1 15.2 62 2-81 116-178 (388)
42 PF05834 Lycopene_cycl: Lycope 98.1 0.00037 8.1E-09 62.3 17.7 188 3-238 93-288 (374)
43 PRK10015 oxidoreductase; Provi 98.1 0.00024 5.3E-09 64.7 16.1 57 2-75 113-170 (429)
44 TIGR01984 UbiH 2-polyprenyl-6- 98.0 0.00027 6E-09 62.8 16.0 58 2-75 110-168 (382)
45 PRK05732 2-octaprenyl-6-methox 98.0 0.00037 7.9E-09 62.2 15.6 57 3-75 118-175 (395)
46 COG0644 FixC Dehydrogenases (f 98.0 0.00093 2E-08 60.1 18.0 59 2-75 100-158 (396)
47 TIGR02023 BchP-ChlP geranylger 98.0 0.0012 2.5E-08 59.2 18.6 65 2-75 97-161 (388)
48 PLN02463 lycopene beta cyclase 98.0 0.00046 1E-08 63.2 15.8 52 2-69 119-170 (447)
49 PRK08020 ubiF 2-octaprenyl-3-m 97.9 0.00055 1.2E-08 61.2 15.8 58 2-75 117-175 (391)
50 PRK07333 2-octaprenyl-6-methox 97.9 0.00037 8.1E-09 62.4 13.4 58 2-75 116-173 (403)
51 PRK07233 hypothetical protein; 97.7 0.0064 1.4E-07 54.8 19.3 57 2-75 203-259 (434)
52 PF13738 Pyr_redox_3: Pyridine 97.7 8.9E-05 1.9E-09 59.9 6.2 51 3-68 88-138 (203)
53 PRK05714 2-octaprenyl-3-methyl 97.7 0.00079 1.7E-08 60.5 12.2 58 2-75 117-174 (405)
54 PLN02612 phytoene desaturase 97.6 0.0069 1.5E-07 57.2 18.5 50 2-66 313-364 (567)
55 PRK08244 hypothetical protein; 97.6 0.0045 9.8E-08 57.3 17.0 61 2-75 105-165 (493)
56 PRK06834 hypothetical protein; 97.6 0.00042 9.1E-09 64.2 9.5 63 2-81 105-167 (488)
57 PRK07364 2-octaprenyl-6-methox 97.5 0.0059 1.3E-07 54.9 16.2 60 3-75 127-187 (415)
58 PRK06134 putative FAD-binding 97.5 0.00026 5.7E-09 66.9 7.7 60 2-73 222-283 (581)
59 TIGR02733 desat_CrtD C-3',4' d 97.5 0.013 2.9E-07 54.1 18.6 56 2-67 237-293 (492)
60 TIGR02730 carot_isom carotene 97.5 0.00028 6E-09 65.4 7.2 53 2-69 234-287 (493)
61 TIGR00275 flavoprotein, HI0933 97.5 0.00081 1.8E-08 60.7 10.1 59 2-76 110-178 (400)
62 PRK07494 2-octaprenyl-6-methox 97.5 0.0035 7.7E-08 55.9 14.1 58 2-75 116-173 (388)
63 PF03486 HI0933_like: HI0933-l 97.4 0.0003 6.4E-09 63.7 6.2 59 2-75 114-183 (409)
64 TIGR03467 HpnE squalene-associ 97.4 0.014 3E-07 52.3 17.0 51 3-68 203-254 (419)
65 COG2081 Predicted flavoprotein 97.4 0.00051 1.1E-08 61.0 7.0 59 2-75 116-184 (408)
66 PRK09126 hypothetical protein; 97.4 0.0061 1.3E-07 54.4 14.3 56 4-75 117-173 (392)
67 PRK11445 putative oxidoreducta 97.3 0.068 1.5E-06 47.2 20.3 55 7-75 108-163 (351)
68 TIGR03862 flavo_PP4765 unchara 97.3 0.0013 2.8E-08 58.8 8.9 59 2-76 91-159 (376)
69 PRK08132 FAD-dependent oxidore 97.3 0.058 1.3E-06 50.6 20.1 60 3-75 131-191 (547)
70 PRK06847 hypothetical protein; 97.3 0.00082 1.8E-08 59.6 7.2 59 2-75 112-170 (375)
71 PRK06184 hypothetical protein; 97.2 0.0059 1.3E-07 56.6 12.8 61 2-75 114-174 (502)
72 PRK04176 ribulose-1,5-biphosph 97.2 0.0013 2.9E-08 55.8 7.3 68 2-73 109-178 (257)
73 PRK06126 hypothetical protein; 97.2 0.041 8.9E-07 51.6 17.6 62 3-75 132-194 (545)
74 PRK07190 hypothetical protein; 97.1 0.0037 8.1E-08 57.9 10.3 62 2-80 114-175 (487)
75 PF00890 FAD_binding_2: FAD bi 97.1 0.0022 4.8E-08 57.8 8.3 61 2-72 146-207 (417)
76 PRK08013 oxidoreductase; Provi 97.1 0.034 7.3E-07 50.0 15.6 58 2-75 116-174 (400)
77 COG0654 UbiH 2-polyprenyl-6-me 97.0 0.064 1.4E-06 48.0 16.8 58 2-75 109-168 (387)
78 TIGR02734 crtI_fam phytoene de 97.0 0.0022 4.7E-08 59.5 7.3 52 2-68 224-276 (502)
79 PRK08274 tricarballylate dehyd 96.9 0.0033 7.2E-08 57.7 8.0 56 2-68 136-192 (466)
80 PRK08163 salicylate hydroxylas 96.9 0.0025 5.5E-08 57.0 6.8 59 2-75 114-173 (396)
81 PLN00093 geranylgeranyl diphos 96.9 0.11 2.4E-06 47.7 17.6 66 2-75 137-205 (450)
82 TIGR02028 ChlP geranylgeranyl 96.8 0.098 2.1E-06 47.1 16.5 64 2-75 98-166 (398)
83 PRK12416 protoporphyrinogen ox 96.8 0.12 2.5E-06 47.4 17.1 47 12-75 239-285 (463)
84 TIGR02485 CobZ_N-term precorri 96.7 0.0058 1.2E-07 55.6 7.7 54 2-69 128-184 (432)
85 PRK06183 mhpA 3-(3-hydroxyphen 96.7 0.033 7.1E-07 52.2 12.9 61 3-75 119-180 (538)
86 PRK12843 putative FAD-binding 96.7 0.0052 1.1E-07 58.2 7.5 56 2-69 226-283 (578)
87 TIGR00562 proto_IX_ox protopor 96.7 0.22 4.9E-06 45.4 18.1 45 8-67 233-278 (462)
88 PLN02487 zeta-carotene desatur 96.7 0.17 3.6E-06 47.9 17.4 54 3-68 301-360 (569)
89 PRK12842 putative succinate de 96.7 0.0077 1.7E-07 56.9 8.5 57 3-71 220-278 (574)
90 PRK07121 hypothetical protein; 96.7 0.0057 1.2E-07 56.7 7.4 56 2-69 182-240 (492)
91 TIGR01789 lycopene_cycl lycope 96.7 0.072 1.6E-06 47.6 14.2 175 11-238 100-285 (370)
92 PRK06481 fumarate reductase fl 96.6 0.0066 1.4E-07 56.5 7.4 55 2-69 195-252 (506)
93 TIGR01810 betA choline dehydro 96.6 0.006 1.3E-07 57.1 7.2 62 3-75 199-263 (532)
94 PRK07588 hypothetical protein; 96.6 0.006 1.3E-07 54.5 6.9 48 8-70 113-160 (391)
95 PF01593 Amino_oxidase: Flavin 96.5 0.0064 1.4E-07 53.9 6.5 50 4-68 216-265 (450)
96 TIGR01813 flavo_cyto_c flavocy 96.5 0.0075 1.6E-07 54.9 7.1 55 2-69 135-193 (439)
97 PLN02172 flavin-containing mon 96.5 0.0094 2E-07 54.9 7.4 55 3-68 117-173 (461)
98 PRK07045 putative monooxygenas 96.4 0.45 9.8E-06 42.4 17.9 55 3-73 112-169 (388)
99 PRK04965 NADH:flavorubredoxin 96.4 0.016 3.6E-07 51.6 8.5 58 3-75 189-247 (377)
100 PRK12844 3-ketosteroid-delta-1 96.4 0.011 2.3E-07 55.8 7.5 56 2-69 213-270 (557)
101 COG2509 Uncharacterized FAD-de 96.4 0.014 2.9E-07 52.9 7.7 58 3-75 179-237 (486)
102 TIGR01292 TRX_reduct thioredox 96.4 0.013 2.7E-07 50.0 7.3 50 3-68 63-112 (300)
103 PRK12839 hypothetical protein; 96.4 0.011 2.3E-07 56.0 7.2 57 2-70 219-278 (572)
104 PF01494 FAD_binding_3: FAD bi 96.4 0.011 2.5E-07 51.2 6.9 63 2-75 116-178 (356)
105 COG1233 Phytoene dehydrogenase 96.3 0.008 1.7E-07 55.7 6.0 50 2-66 229-279 (487)
106 PRK09897 hypothetical protein; 96.3 0.015 3.2E-07 54.5 7.6 52 3-68 113-166 (534)
107 PF13454 NAD_binding_9: FAD-NA 96.2 0.016 3.5E-07 45.2 6.6 43 9-66 112-155 (156)
108 TIGR01812 sdhA_frdA_Gneg succi 96.2 0.017 3.7E-07 54.4 8.0 54 2-68 134-191 (566)
109 PRK12845 3-ketosteroid-delta-1 96.2 0.015 3.2E-07 55.0 7.4 57 2-70 222-280 (564)
110 PRK07573 sdhA succinate dehydr 96.2 0.02 4.3E-07 54.9 8.0 57 3-69 176-233 (640)
111 PRK08626 fumarate reductase fl 96.2 0.018 3.9E-07 55.4 7.7 55 2-69 163-221 (657)
112 PRK06996 hypothetical protein; 96.2 0.039 8.6E-07 49.5 9.5 62 2-75 120-181 (398)
113 PRK06452 sdhA succinate dehydr 96.1 0.022 4.8E-07 53.8 7.8 57 2-68 141-198 (566)
114 PRK12835 3-ketosteroid-delta-1 96.1 0.018 3.8E-07 54.7 7.1 55 3-69 219-276 (584)
115 TIGR01816 sdhA_forward succina 96.1 0.024 5.3E-07 53.5 7.9 58 2-69 124-182 (565)
116 PRK06854 adenylylsulfate reduc 96.0 0.024 5.2E-07 54.0 7.9 55 2-69 137-196 (608)
117 PRK05329 anaerobic glycerol-3- 96.0 0.027 5.9E-07 51.2 7.9 54 2-68 264-318 (422)
118 PRK08401 L-aspartate oxidase; 96.0 0.02 4.4E-07 52.7 7.0 52 2-70 125-177 (466)
119 PRK08849 2-octaprenyl-3-methyl 96.0 0.023 5E-07 50.8 7.2 57 3-75 116-173 (384)
120 TIGR00551 nadB L-aspartate oxi 96.0 0.021 4.5E-07 52.9 7.0 57 2-70 133-191 (488)
121 PRK07843 3-ketosteroid-delta-1 96.0 0.024 5.1E-07 53.5 7.3 55 3-69 214-270 (557)
122 PRK05945 sdhA succinate dehydr 95.9 0.029 6.4E-07 53.1 7.9 55 2-69 140-198 (575)
123 PF00732 GMC_oxred_N: GMC oxid 95.9 0.019 4E-07 49.3 6.0 64 3-75 198-266 (296)
124 PRK07512 L-aspartate oxidase; 95.9 0.017 3.8E-07 53.8 6.1 55 2-68 141-197 (513)
125 PRK06175 L-aspartate oxidase; 95.9 0.027 5.9E-07 51.4 7.2 55 2-69 133-190 (433)
126 PRK08010 pyridine nucleotide-d 95.9 0.029 6.2E-07 51.2 7.3 52 3-70 205-256 (441)
127 PRK12837 3-ketosteroid-delta-1 95.8 0.03 6.6E-07 52.2 7.4 54 3-68 179-235 (513)
128 PRK14727 putative mercuric red 95.8 0.034 7.4E-07 51.3 7.6 52 3-70 234-285 (479)
129 PTZ00363 rab-GDP dissociation 95.8 0.028 6.1E-07 51.5 6.7 54 1-69 236-291 (443)
130 PTZ00139 Succinate dehydrogena 95.7 0.032 6.9E-07 53.3 7.3 55 2-69 171-230 (617)
131 PRK06617 2-octaprenyl-6-methox 95.7 0.037 8.1E-07 49.3 7.3 57 2-75 109-166 (374)
132 PRK05868 hypothetical protein; 95.7 0.035 7.6E-07 49.5 7.0 53 7-75 114-166 (372)
133 PRK08071 L-aspartate oxidase; 95.6 0.027 6E-07 52.5 6.3 55 3-69 136-191 (510)
134 PRK08850 2-octaprenyl-6-methox 95.6 0.04 8.8E-07 49.5 7.2 57 3-75 117-174 (405)
135 TIGR00292 thiazole biosynthesi 95.6 0.051 1.1E-06 46.0 7.4 63 2-68 105-170 (254)
136 PRK08275 putative oxidoreducta 95.6 0.048 1.1E-06 51.3 7.8 55 2-69 142-201 (554)
137 PRK09754 phenylpropionate diox 95.6 0.052 1.1E-06 48.8 7.7 57 3-75 192-249 (396)
138 PRK05675 sdhA succinate dehydr 95.5 0.046 1E-06 51.7 7.5 58 2-69 131-190 (570)
139 PRK09078 sdhA succinate dehydr 95.5 0.046 9.9E-07 52.0 7.5 55 2-69 154-213 (598)
140 PRK08205 sdhA succinate dehydr 95.5 0.044 9.6E-07 51.9 7.3 55 2-69 145-207 (583)
141 PRK09564 coenzyme A disulfide 95.5 0.063 1.4E-06 48.8 8.1 57 3-75 197-254 (444)
142 PF04820 Trp_halogenase: Trypt 95.5 0.04 8.7E-07 50.6 6.6 51 2-68 159-211 (454)
143 PRK05249 soluble pyridine nucl 95.4 0.055 1.2E-06 49.5 7.6 53 3-70 222-274 (461)
144 PRK15317 alkyl hydroperoxide r 95.4 0.057 1.2E-06 50.4 7.7 51 3-68 272-322 (517)
145 PLN02268 probable polyamine ox 95.3 0.043 9.3E-07 49.8 6.2 46 8-68 207-252 (435)
146 PRK06263 sdhA succinate dehydr 95.2 0.056 1.2E-06 50.8 7.0 53 3-68 140-197 (543)
147 PLN00128 Succinate dehydrogena 95.2 0.068 1.5E-06 51.2 7.5 58 2-69 192-251 (635)
148 TIGR02732 zeta_caro_desat caro 95.2 0.061 1.3E-06 49.7 7.0 55 2-68 224-284 (474)
149 TIGR03140 AhpF alkyl hydropero 95.2 0.077 1.7E-06 49.5 7.7 51 3-68 273-323 (515)
150 PRK14694 putative mercuric red 95.1 0.075 1.6E-06 48.9 7.4 52 3-70 224-275 (468)
151 PRK08958 sdhA succinate dehydr 95.1 0.076 1.6E-06 50.5 7.5 58 2-69 148-207 (588)
152 KOG4254 Phytoene desaturase [C 95.1 0.024 5.1E-07 51.4 3.8 54 2-70 269-323 (561)
153 PRK06116 glutathione reductase 95.1 0.075 1.6E-06 48.6 7.2 51 3-68 214-265 (450)
154 PRK08243 4-hydroxybenzoate 3-m 95.1 0.073 1.6E-06 47.7 7.0 60 2-75 108-169 (392)
155 PRK07804 L-aspartate oxidase; 95.1 0.07 1.5E-06 50.2 7.0 58 2-69 149-211 (541)
156 TIGR02731 phytoene_desat phyto 95.0 0.051 1.1E-06 49.6 6.0 62 2-75 218-281 (453)
157 COG0492 TrxB Thioredoxin reduc 94.9 0.061 1.3E-06 46.8 5.8 52 3-71 67-118 (305)
158 TIGR01989 COQ6 Ubiquinone bios 94.9 0.54 1.2E-05 42.8 12.2 58 2-75 122-189 (437)
159 TIGR03219 salicylate_mono sali 94.8 0.096 2.1E-06 47.2 7.1 49 11-75 117-165 (414)
160 PLN02676 polyamine oxidase 94.8 0.059 1.3E-06 50.0 5.7 42 12-68 245-286 (487)
161 TIGR02061 aprA adenosine phosp 94.7 0.12 2.6E-06 49.4 7.6 55 5-69 134-192 (614)
162 PRK06416 dihydrolipoamide dehy 94.7 0.11 2.4E-06 47.7 7.1 55 3-69 219-273 (462)
163 PRK06753 hypothetical protein; 94.6 0.086 1.9E-06 46.7 6.3 49 11-75 110-158 (373)
164 TIGR01424 gluta_reduc_2 glutat 94.6 0.12 2.5E-06 47.4 7.2 52 3-69 213-264 (446)
165 PF00070 Pyr_redox: Pyridine n 94.6 0.096 2.1E-06 35.8 5.2 35 3-37 46-80 (80)
166 PRK07538 hypothetical protein; 94.6 0.1 2.2E-06 47.1 6.8 62 3-75 108-171 (413)
167 PLN02927 antheraxanthin epoxid 94.6 0.13 2.9E-06 49.4 7.7 53 8-75 202-255 (668)
168 TIGR01350 lipoamide_DH dihydro 94.6 0.12 2.7E-06 47.2 7.4 54 3-69 217-270 (461)
169 PRK07057 sdhA succinate dehydr 94.6 0.13 2.7E-06 49.0 7.6 58 2-69 153-212 (591)
170 PRK07803 sdhA succinate dehydr 94.6 0.13 2.8E-06 49.3 7.6 44 12-68 166-213 (626)
171 PRK05192 tRNA uridine 5-carbox 94.6 0.1 2.2E-06 49.5 6.7 51 3-69 106-158 (618)
172 PF00743 FMO-like: Flavin-bind 94.5 0.12 2.6E-06 48.5 7.0 54 3-68 90-150 (531)
173 KOG0404 Thioredoxin reductase 94.5 0.041 8.8E-07 45.6 3.3 52 3-71 76-127 (322)
174 TIGR00136 gidA glucose-inhibit 94.4 0.14 3.1E-06 48.6 7.4 50 2-67 101-153 (617)
175 PRK13748 putative mercuric red 94.4 0.14 3E-06 48.2 7.4 52 3-70 316-367 (561)
176 TIGR01811 sdhA_Bsu succinate d 94.4 0.16 3.5E-06 48.4 7.7 49 10-68 146-196 (603)
177 PRK11883 protoporphyrinogen ox 94.4 0.15 3.2E-06 46.2 7.3 43 9-66 230-273 (451)
178 TIGR03143 AhpF_homolog putativ 94.3 0.13 2.9E-06 48.5 7.0 50 3-69 66-115 (555)
179 PRK07208 hypothetical protein; 94.3 0.13 2.7E-06 47.4 6.8 56 2-68 223-280 (479)
180 PRK07251 pyridine nucleotide-d 94.2 0.16 3.4E-06 46.3 7.2 50 4-69 205-254 (438)
181 PLN02507 glutathione reductase 94.2 0.17 3.7E-06 47.1 7.5 52 3-69 250-301 (499)
182 PRK06475 salicylate hydroxylas 94.2 0.16 3.5E-06 45.6 7.1 61 2-75 112-173 (400)
183 PRK12834 putative FAD-binding 94.0 0.2 4.2E-06 47.2 7.4 58 10-69 165-228 (549)
184 PRK06069 sdhA succinate dehydr 93.9 0.2 4.3E-06 47.5 7.3 53 3-68 143-200 (577)
185 PRK13977 myosin-cross-reactive 93.9 0.14 3E-06 48.2 6.2 59 2-70 231-295 (576)
186 PRK07395 L-aspartate oxidase; 93.8 0.12 2.7E-06 48.7 5.6 55 2-68 139-197 (553)
187 PRK07236 hypothetical protein; 93.7 0.2 4.2E-06 44.8 6.7 49 11-75 112-160 (386)
188 PRK07845 flavoprotein disulfid 93.7 0.26 5.7E-06 45.4 7.5 53 3-70 224-276 (466)
189 PRK09231 fumarate reductase fl 93.6 0.23 5.1E-06 47.1 7.3 54 3-69 139-197 (582)
190 PRK09077 L-aspartate oxidase; 93.6 0.23 4.9E-06 46.6 7.1 57 3-69 144-208 (536)
191 PRK02106 choline dehydrogenase 93.6 0.16 3.5E-06 47.9 6.0 60 5-75 208-270 (560)
192 PRK06327 dihydrolipoamide dehy 93.3 0.33 7.2E-06 44.8 7.6 56 3-69 230-285 (475)
193 PF01134 GIDA: Glucose inhibit 93.3 0.28 6.1E-06 44.1 6.8 48 3-66 101-150 (392)
194 PRK07818 dihydrolipoamide dehy 93.3 0.36 7.8E-06 44.4 7.7 54 3-69 219-274 (466)
195 TIGR02053 MerA mercuric reduct 93.1 0.33 7E-06 44.6 7.2 54 3-68 213-266 (463)
196 PRK13512 coenzyme A disulfide 93.1 0.29 6.3E-06 44.7 6.8 49 8-68 69-117 (438)
197 PRK10262 thioredoxin reductase 93.0 0.4 8.7E-06 41.6 7.3 48 4-68 70-117 (321)
198 TIGR01176 fum_red_Fp fumarate 93.0 0.42 9.2E-06 45.3 7.9 55 2-69 137-196 (580)
199 PLN02815 L-aspartate oxidase 92.9 0.25 5.4E-06 47.0 6.3 58 2-69 160-223 (594)
200 PRK06370 mercuric reductase; V 92.8 0.4 8.7E-06 44.0 7.3 53 3-69 218-272 (463)
201 PRK06912 acoL dihydrolipoamide 92.8 0.44 9.6E-06 43.7 7.5 53 3-69 217-269 (458)
202 COG1252 Ndh NADH dehydrogenase 92.5 0.29 6.4E-06 44.2 5.8 53 5-75 217-269 (405)
203 PRK06115 dihydrolipoamide dehy 92.3 0.55 1.2E-05 43.2 7.6 56 3-68 221-276 (466)
204 COG1231 Monoamine oxidase [Ami 92.3 0.3 6.4E-06 44.4 5.5 48 3-66 211-260 (450)
205 PRK07846 mycothione reductase; 92.2 0.48 1.1E-05 43.4 7.0 48 8-70 217-264 (451)
206 PRK04965 NADH:flavorubredoxin 92.2 0.47 1E-05 42.3 6.8 45 6-68 67-111 (377)
207 TIGR03169 Nterm_to_SelD pyridi 92.2 0.58 1.3E-05 41.3 7.3 54 3-75 197-250 (364)
208 PLN02529 lysine-specific histo 92.1 0.33 7.1E-06 47.3 6.0 42 10-67 365-406 (738)
209 TIGR01421 gluta_reduc_1 glutat 92.1 0.53 1.2E-05 43.1 7.1 54 3-70 213-267 (450)
210 PTZ00306 NADH-dependent fumara 92.0 0.48 1E-05 48.7 7.2 52 10-69 560-621 (1167)
211 PLN02568 polyamine oxidase 91.9 0.43 9.3E-06 44.9 6.4 43 11-68 254-296 (539)
212 TIGR01423 trypano_reduc trypan 91.9 0.57 1.2E-05 43.5 7.1 52 3-69 237-289 (486)
213 TIGR03385 CoA_CoA_reduc CoA-di 91.8 0.52 1.1E-05 42.7 6.7 47 7-67 54-102 (427)
214 KOG1335 Dihydrolipoamide dehyd 91.7 0.56 1.2E-05 42.0 6.4 55 2-66 257-312 (506)
215 PRK08641 sdhA succinate dehydr 91.7 0.64 1.4E-05 44.2 7.4 57 3-69 139-201 (589)
216 TIGR01438 TGR thioredoxin and 91.7 0.6 1.3E-05 43.3 7.0 55 3-69 226-280 (484)
217 PTZ00052 thioredoxin reductase 91.6 0.66 1.4E-05 43.2 7.3 52 3-69 228-279 (499)
218 PF12831 FAD_oxidored: FAD dep 91.6 0.053 1.2E-06 49.4 0.0 59 3-75 96-155 (428)
219 PRK09564 coenzyme A disulfide 91.5 0.63 1.4E-05 42.3 6.9 51 5-67 64-114 (444)
220 PLN02576 protoporphyrinogen ox 91.5 0.53 1.2E-05 43.4 6.5 44 8-65 247-294 (496)
221 TIGR03452 mycothione_red mycot 91.3 0.77 1.7E-05 42.1 7.3 48 7-69 219-266 (452)
222 PLN02985 squalene monooxygenas 91.3 0.81 1.8E-05 42.8 7.5 59 2-75 152-214 (514)
223 TIGR02360 pbenz_hydroxyl 4-hyd 91.2 0.67 1.4E-05 41.6 6.7 60 2-75 108-169 (390)
224 TIGR01292 TRX_reduct thioredox 91.1 0.84 1.8E-05 38.7 7.0 57 3-69 182-239 (300)
225 TIGR02374 nitri_red_nirB nitri 91.1 0.68 1.5E-05 45.6 7.1 58 3-75 188-246 (785)
226 COG1232 HemY Protoporphyrinoge 91.0 0.44 9.6E-06 43.6 5.3 51 8-75 223-273 (444)
227 PTZ00318 NADH dehydrogenase-li 91.0 0.75 1.6E-05 41.8 6.9 53 4-75 235-287 (424)
228 PRK05976 dihydrolipoamide dehy 91.0 0.87 1.9E-05 41.9 7.4 54 3-69 227-282 (472)
229 COG1249 Lpd Pyruvate/2-oxoglut 90.6 0.77 1.7E-05 42.2 6.6 51 3-66 220-270 (454)
230 COG3486 IucD Lysine/ornithine 90.6 0.45 9.8E-06 42.8 4.8 49 9-67 290-339 (436)
231 TIGR03169 Nterm_to_SelD pyridi 90.5 0.6 1.3E-05 41.2 5.7 47 4-68 61-107 (364)
232 PLN02661 Putative thiazole syn 90.5 0.99 2.1E-05 40.1 6.9 59 3-69 178-245 (357)
233 TIGR02374 nitri_red_nirB nitri 90.2 0.81 1.7E-05 45.1 6.7 47 5-68 62-108 (785)
234 KOG1346 Programmed cell death 89.9 0.27 5.8E-06 44.5 2.8 58 2-74 398-456 (659)
235 PRK08294 phenol 2-monooxygenas 89.8 20 0.00043 34.6 18.8 65 3-75 147-216 (634)
236 PRK09754 phenylpropionate diox 89.4 1.2 2.5E-05 40.1 6.7 45 7-68 68-112 (396)
237 COG1635 THI4 Ribulose 1,5-bisp 89.4 2.1 4.6E-05 35.6 7.4 65 2-73 114-183 (262)
238 KOG1399 Flavin-containing mono 89.2 1.1 2.4E-05 41.2 6.3 54 4-68 97-153 (448)
239 PRK14989 nitrite reductase sub 89.1 1.4 3E-05 43.8 7.5 58 3-75 193-253 (847)
240 KOG2404 Fumarate reductase, fl 88.9 0.56 1.2E-05 41.1 4.0 54 11-75 159-216 (477)
241 PLN03000 amine oxidase 88.9 0.77 1.7E-05 45.5 5.4 40 13-68 392-431 (881)
242 PRK06467 dihydrolipoamide dehy 88.8 1.6 3.4E-05 40.3 7.2 54 4-69 222-275 (471)
243 TIGR03385 CoA_CoA_reduc CoA-di 88.8 1.3 2.9E-05 40.0 6.7 56 3-75 185-241 (427)
244 PF13434 K_oxygenase: L-lysine 88.8 0.43 9.3E-06 42.2 3.3 49 6-65 104-156 (341)
245 COG3380 Predicted NAD/FAD-depe 88.7 0.39 8.5E-06 41.0 2.8 45 7-65 113-157 (331)
246 COG2072 TrkA Predicted flavopr 88.6 0.59 1.3E-05 42.9 4.2 54 4-70 89-146 (443)
247 PTZ00058 glutathione reductase 88.3 1.9 4.2E-05 40.8 7.5 53 3-69 284-337 (561)
248 TIGR03140 AhpF alkyl hydropero 88.2 1.6 3.4E-05 40.8 6.8 56 4-69 394-451 (515)
249 PRK14989 nitrite reductase sub 88.1 1.4 3E-05 43.8 6.7 46 6-68 68-113 (847)
250 TIGR02462 pyranose_ox pyranose 87.8 1.3 2.8E-05 41.8 6.0 56 10-75 226-287 (544)
251 PF07992 Pyr_redox_2: Pyridine 87.7 0.76 1.6E-05 36.5 3.9 52 4-67 65-121 (201)
252 PRK13800 putative oxidoreducta 87.5 2.2 4.7E-05 42.8 7.7 57 3-69 145-206 (897)
253 COG2303 BetA Choline dehydroge 87.3 2.1 4.5E-05 40.4 7.1 64 2-75 207-274 (542)
254 PRK10262 thioredoxin reductase 87.2 1.5 3.2E-05 38.1 5.7 57 5-70 193-250 (321)
255 KOG1336 Monodehydroascorbate/f 87.2 1.1 2.4E-05 41.0 4.9 49 3-66 261-311 (478)
256 PRK12810 gltD glutamate syntha 87.2 2.5 5.4E-05 39.0 7.5 67 3-75 335-409 (471)
257 PLN02546 glutathione reductase 87.0 2.2 4.8E-05 40.4 7.1 52 3-70 299-352 (558)
258 PF01946 Thi4: Thi4 family; PD 86.7 3.1 6.6E-05 34.5 6.8 64 2-69 101-166 (230)
259 PLN02328 lysine-specific histo 86.6 1.6 3.6E-05 43.0 6.1 40 13-68 448-487 (808)
260 COG3075 GlpB Anaerobic glycero 86.5 1.4 3.1E-05 38.8 5.0 54 2-68 263-317 (421)
261 PRK13512 coenzyme A disulfide 86.2 2.1 4.5E-05 39.1 6.4 54 3-75 195-249 (438)
262 PRK08255 salicylyl-CoA 5-hydro 84.4 39 0.00085 33.3 14.5 41 2-69 102-142 (765)
263 PRK15317 alkyl hydroperoxide r 82.9 3.8 8.2E-05 38.3 6.6 49 10-68 400-449 (517)
264 PLN02976 amine oxidase 82.5 2.7 5.9E-05 44.0 5.8 42 11-67 945-996 (1713)
265 PRK06292 dihydrolipoamide dehy 81.8 5.9 0.00013 36.2 7.4 51 4-68 217-268 (460)
266 TIGR01316 gltA glutamate synth 81.8 5.5 0.00012 36.5 7.1 66 4-70 316-389 (449)
267 PTZ00318 NADH dehydrogenase-li 81.3 3.8 8.2E-05 37.2 5.9 56 5-68 70-125 (424)
268 PRK11749 dihydropyrimidine deh 81.2 4.1 8.9E-05 37.3 6.1 61 4-69 318-388 (457)
269 PRK07845 flavoprotein disulfid 79.9 5.4 0.00012 36.7 6.5 51 4-68 99-151 (466)
270 PRK12831 putative oxidoreducta 78.4 7.5 0.00016 35.8 6.9 62 5-70 326-398 (464)
271 PRK12770 putative glutamate sy 77.7 6.1 0.00013 34.8 5.9 67 4-70 217-288 (352)
272 COG1251 NirB NAD(P)H-nitrite r 76.9 4.9 0.00011 39.0 5.2 45 7-68 69-113 (793)
273 COG0029 NadB Aspartate oxidase 76.8 4 8.6E-05 37.8 4.4 56 2-68 138-196 (518)
274 PF00996 GDI: GDP dissociation 76.0 6.9 0.00015 35.9 5.8 47 1-63 236-284 (438)
275 PLN02785 Protein HOTHEAD 74.5 11 0.00023 36.0 6.9 59 6-75 229-298 (587)
276 PRK12814 putative NADPH-depend 74.4 9.9 0.00021 36.7 6.8 65 4-69 368-438 (652)
277 PRK05976 dihydrolipoamide dehy 73.4 8.6 0.00019 35.4 5.9 49 6-68 101-154 (472)
278 COG2907 Predicted NAD/FAD-bind 73.4 5.8 0.00013 35.3 4.4 54 5-75 225-278 (447)
279 PRK12769 putative oxidoreducta 73.0 12 0.00026 36.1 6.9 65 4-69 513-585 (654)
280 TIGR01318 gltD_gamma_fam gluta 72.7 14 0.0003 34.1 7.1 65 4-69 327-399 (467)
281 TIGR01424 gluta_reduc_2 glutat 72.3 8.6 0.00019 35.1 5.6 45 4-67 97-141 (446)
282 PTZ00153 lipoamide dehydrogena 71.6 11 0.00024 36.5 6.3 62 8-69 365-428 (659)
283 PRK13984 putative oxidoreducta 71.0 12 0.00027 35.5 6.6 63 5-68 470-538 (604)
284 PRK12771 putative glutamate sy 70.9 14 0.0003 34.9 6.8 63 4-69 312-381 (564)
285 PRK06467 dihydrolipoamide dehy 70.0 11 0.00024 34.7 5.8 46 6-67 102-147 (471)
286 TIGR01372 soxA sarcosine oxida 69.4 14 0.00031 37.5 6.8 60 3-75 357-419 (985)
287 PLN02507 glutathione reductase 68.4 17 0.00038 33.8 6.8 46 6-67 133-178 (499)
288 COG3573 Predicted oxidoreducta 67.4 21 0.00045 31.8 6.5 60 4-66 159-226 (552)
289 COG0446 HcaD Uncharacterized N 67.3 20 0.00044 31.5 6.8 57 3-74 184-244 (415)
290 PRK14694 putative mercuric red 66.1 19 0.00041 33.1 6.5 41 11-67 111-151 (468)
291 PRK12809 putative oxidoreducta 65.9 20 0.00043 34.5 6.8 63 5-68 497-567 (639)
292 PF07156 Prenylcys_lyase: Pren 65.7 14 0.0003 33.1 5.4 47 7-66 135-185 (368)
293 PRK05249 soluble pyridine nucl 65.3 21 0.00045 32.6 6.6 47 5-67 102-148 (461)
294 TIGR03452 mycothione_red mycot 64.6 8.6 0.00019 35.2 3.9 38 10-67 105-142 (452)
295 COG1251 NirB NAD(P)H-nitrite r 63.3 7.4 0.00016 37.8 3.3 59 2-75 192-251 (793)
296 PRK06416 dihydrolipoamide dehy 63.2 19 0.0004 33.0 5.9 47 5-68 100-146 (462)
297 PRK12778 putative bifunctional 62.0 27 0.00057 34.4 7.0 65 5-70 616-688 (752)
298 PRK12779 putative bifunctional 61.9 32 0.0007 34.8 7.6 66 4-71 491-565 (944)
299 PRK06327 dihydrolipoamide dehy 60.2 20 0.00044 33.0 5.6 49 6-68 109-157 (475)
300 PRK09897 hypothetical protein; 59.1 28 0.0006 32.9 6.3 47 4-66 398-445 (534)
301 COG1252 Ndh NADH dehydrogenase 58.2 18 0.00039 32.8 4.7 48 4-69 64-112 (405)
302 PTZ00367 squalene epoxidase; P 58.1 20 0.00044 34.0 5.3 22 53-75 204-225 (567)
303 PF06100 Strep_67kDa_ant: Stre 58.0 55 0.0012 30.6 7.8 24 3-26 213-236 (500)
304 COG0445 GidA Flavin-dependent 57.5 6.4 0.00014 37.0 1.7 43 11-69 115-159 (621)
305 KOG2415 Electron transfer flav 57.0 1.6E+02 0.0036 27.2 10.3 91 2-99 188-290 (621)
306 PRK09853 putative selenate red 56.9 25 0.00054 35.8 5.8 63 4-69 714-780 (1019)
307 PRK12770 putative glutamate sy 56.8 7.3 0.00016 34.3 2.0 53 4-69 75-131 (352)
308 COG4529 Uncharacterized protei 55.3 18 0.00038 33.5 4.1 41 13-68 122-164 (474)
309 PRK12775 putative trifunctiona 55.2 44 0.00095 34.2 7.3 64 5-70 617-688 (1006)
310 COG1053 SdhA Succinate dehydro 55.0 12 0.00026 35.5 3.1 57 2-68 143-202 (562)
311 TIGR03315 Se_ygfK putative sel 54.3 46 0.001 34.0 7.2 68 4-75 712-784 (1012)
312 COG0446 HcaD Uncharacterized N 54.1 24 0.00053 31.0 4.9 45 8-70 64-108 (415)
313 PRK06115 dihydrolipoamide dehy 53.8 40 0.00086 31.0 6.3 44 9-68 105-148 (466)
314 KOG1336 Monodehydroascorbate/f 52.9 28 0.0006 32.2 5.0 42 8-66 138-179 (478)
315 PRK08010 pyridine nucleotide-d 52.8 37 0.00081 30.8 6.0 42 10-68 90-131 (441)
316 KOG0685 Flavin-containing amin 52.0 17 0.00036 33.7 3.4 42 12-68 244-286 (498)
317 PRK06116 glutathione reductase 51.9 30 0.00064 31.5 5.2 41 6-67 102-142 (450)
318 TIGR01350 lipoamide_DH dihydro 51.7 43 0.00093 30.5 6.2 44 7-67 99-142 (461)
319 PRK07846 mycothione reductase; 51.1 26 0.00057 32.1 4.7 40 7-66 99-138 (451)
320 TIGR01421 gluta_reduc_1 glutat 50.3 34 0.00075 31.3 5.3 42 5-67 99-140 (450)
321 TIGR02730 carot_isom carotene 49.2 47 0.001 30.7 6.1 32 209-240 457-490 (493)
322 PRK06912 acoL dihydrolipoamide 47.5 55 0.0012 29.9 6.2 44 8-68 101-144 (458)
323 PRK14727 putative mercuric red 46.9 57 0.0012 30.1 6.3 40 11-66 121-160 (479)
324 PRK06370 mercuric reductase; V 46.6 33 0.00072 31.4 4.6 40 7-67 104-144 (463)
325 PRK06567 putative bifunctional 45.2 56 0.0012 33.4 6.1 64 4-67 647-727 (1028)
326 PRK11749 dihydropyrimidine deh 44.6 15 0.00033 33.6 2.1 41 4-68 197-237 (457)
327 KOG1346 Programmed cell death 44.6 32 0.00069 31.6 3.9 47 7-70 267-313 (659)
328 COG3634 AhpF Alkyl hydroperoxi 44.3 28 0.00061 31.2 3.5 52 3-69 272-326 (520)
329 PRK07251 pyridine nucleotide-d 43.8 68 0.0015 29.0 6.2 45 7-68 86-130 (438)
330 TIGR01316 gltA glutamate synth 42.1 12 0.00027 34.2 1.1 41 5-69 191-231 (449)
331 COG3486 IucD Lysine/ornithine 41.9 42 0.0009 30.6 4.3 45 6-66 107-155 (436)
332 PRK12779 putative bifunctional 41.8 25 0.00054 35.6 3.2 43 4-69 363-405 (944)
333 PRK13748 putative mercuric red 41.8 81 0.0018 29.6 6.5 41 11-67 203-243 (561)
334 PRK12831 putative oxidoreducta 39.8 19 0.0004 33.3 1.9 42 5-68 199-240 (464)
335 KOG0405 Pyridine nucleotide-di 38.2 59 0.0013 29.2 4.6 48 4-67 237-286 (478)
336 TIGR03143 AhpF_homolog putativ 36.4 1.1E+02 0.0025 28.8 6.6 52 5-70 186-248 (555)
337 KOG1298 Squalene monooxygenase 35.7 3.5E+02 0.0077 24.8 9.8 59 2-72 152-212 (509)
338 PLN02546 glutathione reductase 34.9 74 0.0016 30.2 5.1 44 3-67 184-227 (558)
339 PTZ00058 glutathione reductase 34.7 73 0.0016 30.3 5.0 13 54-66 200-212 (561)
340 TIGR01372 soxA sarcosine oxida 34.7 1.1E+02 0.0024 31.3 6.5 62 4-67 222-285 (985)
341 KOG0029 Amine oxidase [Seconda 34.6 76 0.0016 29.7 5.0 42 11-67 228-270 (501)
342 TIGR02734 crtI_fam phytoene de 34.4 77 0.0017 29.2 5.1 32 209-240 457-490 (502)
343 COG1148 HdrA Heterodisulfide r 34.2 58 0.0013 30.6 4.0 58 7-75 425-487 (622)
344 TIGR01438 TGR thioredoxin and 34.2 1.1E+02 0.0024 28.3 6.1 45 6-66 109-153 (484)
345 TIGR02053 MerA mercuric reduct 34.0 82 0.0018 28.7 5.2 44 5-67 96-139 (463)
346 TIGR01318 gltD_gamma_fam gluta 33.8 25 0.00055 32.4 1.7 42 4-69 198-239 (467)
347 PRK12778 putative bifunctional 30.8 28 0.00061 34.2 1.6 42 4-68 488-529 (752)
348 PRK07818 dihydrolipoamide dehy 30.8 84 0.0018 28.8 4.7 15 54-68 133-147 (466)
349 TIGR01423 trypano_reduc trypan 30.6 1.5E+02 0.0033 27.5 6.3 16 53-68 148-163 (486)
350 COG1445 FrwB Phosphotransferas 30.6 30 0.00065 25.8 1.3 44 2-68 23-68 (122)
351 PRK09853 putative selenate red 29.7 77 0.0017 32.5 4.4 40 5-69 597-636 (1019)
352 COG1249 Lpd Pyruvate/2-oxoglut 27.8 1.4E+02 0.0029 27.7 5.4 46 4-67 101-146 (454)
353 KOG1439 RAB proteins geranylge 27.4 1.3E+02 0.0029 27.4 5.1 58 1-75 236-295 (440)
354 KOG3851 Sulfide:quinone oxidor 27.2 28 0.00061 30.8 0.8 35 19-70 113-147 (446)
355 TIGR01317 GOGAT_sm_gam glutama 26.7 38 0.00082 31.4 1.6 40 5-68 201-240 (485)
356 PRK12775 putative trifunctiona 26.2 38 0.00082 34.6 1.6 46 3-70 486-531 (1006)
357 COG0492 TrxB Thioredoxin reduc 25.3 2.7E+02 0.0058 24.2 6.6 55 2-69 183-239 (305)
358 PF07338 DUF1471: Protein of u 25.3 1.4E+02 0.003 18.8 3.6 29 2-33 23-51 (56)
359 PRK13984 putative oxidoreducta 24.7 39 0.00085 32.2 1.4 41 4-68 340-380 (604)
360 KOG2614 Kynurenine 3-monooxyge 24.1 70 0.0015 29.1 2.7 42 18-75 128-169 (420)
361 PRK12814 putative NADPH-depend 24.0 41 0.00089 32.5 1.4 41 4-68 250-290 (652)
362 PTZ00052 thioredoxin reductase 23.2 2.2E+02 0.0048 26.4 6.0 14 54-67 142-155 (499)
363 PF13434 K_oxygenase: L-lysine 22.4 64 0.0014 28.5 2.2 19 48-66 321-339 (341)
364 KOG1335 Dihydrolipoamide dehyd 22.1 2.3E+02 0.0049 26.0 5.4 47 6-68 139-185 (506)
365 PF07865 DUF1652: Protein of u 22.0 1.9E+02 0.004 19.3 3.8 41 196-237 23-64 (69)
366 smart00546 CUE Domain that may 20.7 41 0.00088 19.7 0.4 20 161-180 3-22 (43)
367 PLN02172 flavin-containing mon 20.6 90 0.0019 28.8 2.8 15 54-68 274-288 (461)
368 TIGR01317 GOGAT_sm_gam glutama 20.2 3.6E+02 0.0078 25.0 6.7 18 50-67 396-413 (485)
No 1
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.96 E-value=9.6e-28 Score=214.85 Aligned_cols=212 Identities=27% Similarity=0.346 Sum_probs=161.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC-CCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~-~~~ 80 (240)
+|.+.++++|++++++++|++++..++++.|+++++ ++.||.||+|+|.|+..++++++. .++
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g----------------~i~ad~vV~A~G~~s~~l~~~~g~~~~~ 217 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG----------------EYEARTLINCAGLMSDRLAKMAGLEPDF 217 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC----------------EEEeCEEEECCCcchHHHHHHhCCCCCC
Confidence 577888999999999999999988888888888776 799999999999999999998832 235
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCccccCCcc--cc-----cccc---
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGID--DT-----LSFL--- 148 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~~~~~--~~-----~~~~--- 148 (240)
++.| +||+++.+++.....+++.+||+|+.. +.++|++|+.+|++++|+++......+ +. .++.
T Consensus 218 ~v~p----~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~ 293 (393)
T PRK11728 218 RIVP----FRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEIL 293 (393)
T ss_pred ceEE----eeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHH
Confidence 5566 999999998653445677889888754 467899999999999998654322100 00 0000
Q ss_pred --ccccc---ccchhhHHHH---------HHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCE
Q 026314 149 --NRFDY---SVNANRAERF---------YPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGL 213 (240)
Q Consensus 149 --~~~~~---~~~~~~~~~~---------~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~ 213 (240)
+.... ..+.+.++.+ ++.+++++|.|...++.+.|+|+||....+ +.|-.||+|... +++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~-----~~~ 368 (393)
T PRK11728 294 TYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVET-----PRS 368 (393)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecC-----CCE
Confidence 00000 0023334444 699999999999999999999999954333 456689988653 589
Q ss_pred EEEeCCCCchHhhhHHHHHHHHHHH
Q 026314 214 VNLFGIESPGLTSSMAIAEYVAAKF 238 (240)
Q Consensus 214 ~~~~G~~~~G~t~ap~~g~~va~~i 238 (240)
+++.|..|||+|.||+||+.|++++
T Consensus 369 ~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 369 LHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred EEEcCCCCchHHccHHHHHHHHhhC
Confidence 9999999999999999999999874
No 2
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.96 E-value=7.2e-28 Score=210.33 Aligned_cols=192 Identities=21% Similarity=0.224 Sum_probs=154.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|++.|+++|++|+++++|++++..+++|. |.|++| +++||.||||+|+|+..|.+ +
T Consensus 142 ~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~a~~vV~a~G~~~~~l~~------~ 199 (337)
T TIGR02352 142 ALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG----------------DVQADQVVLAAGAWAGELLP------L 199 (337)
T ss_pred HHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC----------------EEECCEEEEcCChhhhhccc------C
Confidence 578899999999999999999998888775 888877 89999999999999998754 3
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
++.| .+|+++.++++.....+..+.... .....+++|..+|++++|++.... .++...+.+.+
T Consensus 200 ~~~~----~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~p~~~g~~~iG~~~~~~-----------~~~~~~~~~~~ 262 (337)
T TIGR02352 200 PLRP----VRGQPLRLEAPAVPLLNRPLRAVV--YGRRVYIVPRRDGRLVVGATMEES-----------GFDTTPTLGGI 262 (337)
T ss_pred Cccc----cCceEEEeeccccccCCcccceEE--EcCCEEEEEcCCCeEEEEEecccc-----------CccCCCCHHHH
Confidence 4567 999999987542111111110000 123367888888889999765432 23445567789
Q ss_pred HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+.+.+.+.++||.|+..++.+.|+|+||+ ++|+.|+||..+ ..+|+|+++|++|+|++++|++|+.+|++|+
T Consensus 263 ~~l~~~~~~~~P~l~~~~~~~~~~g~r~~-----t~D~~piig~~~--~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 263 KELLRDAYTILPALKEARLLETWAGLRPG-----TPDNLPYIGEHP--EDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred HHHHHHHHHhCCCcccCcHHHheecCCCC-----CCCCCCEeCccC--CCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 99999999999999999999999999998 578899999987 6789999999999999999999999999986
No 3
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.95 E-value=6.2e-27 Score=208.77 Aligned_cols=190 Identities=22% Similarity=0.207 Sum_probs=153.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
+|++++++ |++|+++++|++|+.++++|.|+|++|. .++||+||+|+|+|+..|.+++ +++
T Consensus 140 ~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~---------------~~~a~~vV~a~G~~~~~l~~~~---~~p 200 (381)
T TIGR03197 140 ALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGE---------------VIAASVVVLANGAQAGQLAQTA---HLP 200 (381)
T ss_pred HHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCC---------------EEEcCEEEEcCCcccccccccc---cCC
Confidence 57778888 9999999999999988888999998872 4899999999999999988764 566
Q ss_pred cCCCceeeceeEEEEcCCCC-CCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 82 FIPPAYYARGCYFSLANTKV-APFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
+.| .||+++.+++... ...+..+ ....|++|..+|++++|.+.+.. ..+...+.+.+
T Consensus 201 i~p----~rg~~~~~~~~~~~~~~~~~~-------~~~~y~~p~~~g~~~iG~t~~~~-----------~~~~~~~~~~~ 258 (381)
T TIGR03197 201 LRP----VRGQVSHLPATEALSALKTVL-------CYDGYLTPANNGEHCIGASYDRN-----------DDDLALREADH 258 (381)
T ss_pred ccc----cccceeeccCCCcccccCceE-------eCCceecccCCCceEeecccCCC-----------CCCCCcCHHHH
Confidence 677 9999999875321 1111111 11247888888899999765432 22344566778
Q ss_pred HHHHHHHhhhCCCCC-----CCCccccccccCCeecCCCCCCCCeEEecCCCCC-------------------------C
Q 026314 161 ERFYPEIRKYYPDLR-----DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG-------------------------V 210 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~-----~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~-------------------------~ 210 (240)
+.+++.+.++||.+. +.++.+.|+|+||. ++|+.|+||..+ + .
T Consensus 259 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~-----t~D~~Piig~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (381)
T TIGR03197 259 AENLERLAECLPALAWASEVDISALQGRVGVRCA-----SPDHLPLVGAVP--DFEAIKEAYAELAKDKNRPIAEPAPYY 331 (381)
T ss_pred HHHHHHHHHhCcccchhhccCccccCceEEEecc-----CCCcCccCCCCC--CHHHHHHHHHHhcccccccccccCCCC
Confidence 899999999999997 78899999999998 678889999987 5 7
Q ss_pred CCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 211 PGLVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 211 ~~~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+|+|+++|++|+||+++|++|+++|++|.
T Consensus 332 ~g~~~a~G~~g~G~~~ap~~g~~la~~i~ 360 (381)
T TIGR03197 332 PGLYVLGGLGSRGLTSAPLAAEILAAQIC 360 (381)
T ss_pred CCeEEEecccchHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999985
No 4
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.94 E-value=8.7e-26 Score=208.89 Aligned_cols=206 Identities=23% Similarity=0.306 Sum_probs=155.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
++++.|+++||+|+++++|++|++.++++. |++.+.. ++++.+|+|++||||||+|++.|++++ +.++
T Consensus 133 al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~----------~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~ 201 (516)
T TIGR03377 133 ANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHK----------TGEEERIEAQVVINAAGIWAGRIAEYA-GLDI 201 (516)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcC----------CCcEEEEEcCEEEECCCcchHHHHHhc-CCCC
Confidence 678999999999999999999999888753 5543210 122447999999999999999999998 5577
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
++.| .||++++++.... +..+..++.. ..+.+++|. ++.+++|++.+..++ ..+..++.+++
T Consensus 202 ~i~p----~kG~~lv~~~~~~---~~~~~~~~~~-~~g~~~~P~-~~~~liGtT~~~~~~---------~~~~~~~~~~v 263 (516)
T TIGR03377 202 RMFP----AKGALLIMNHRIN---NTVINRCRKP-SDADILVPG-DTISIIGTTSERIDD---------PDDLPVTQEEV 263 (516)
T ss_pred ceec----ceEEEEEECCccc---ccccccccCC-CCCcEEEEC-CCeEEEecCCCCCCC---------CCCCCCCHHHH
Confidence 7777 9999999975321 1222222222 233467784 778999998765432 44566788999
Q ss_pred HHHHHHHhhhCCCCCCCCccccccccCCeecCCC-----CCCCCeE-EecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-----QSPIDFV-IQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~-----~~~~~~i-i~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
+++++.+.++||.|...++.++|+|+||.+.++. ...++|. ++....++.+|+++++|.. +|++++||+.+
T Consensus 264 ~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk---ltt~r~~Ae~~ 340 (516)
T TIGR03377 264 DVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK---LTTYRLMAEWA 340 (516)
T ss_pred HHHHHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch---HHHHHHHHHHH
Confidence 9999999999999999999999999999875421 1234664 5643222689999999854 99999999999
Q ss_pred HHHHh
Q 026314 235 AAKFL 239 (240)
Q Consensus 235 a~~i~ 239 (240)
++++.
T Consensus 341 ~d~~~ 345 (516)
T TIGR03377 341 TDVVC 345 (516)
T ss_pred HHHHH
Confidence 99875
No 5
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.94 E-value=7.1e-26 Score=203.79 Aligned_cols=194 Identities=21% Similarity=0.265 Sum_probs=150.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|++.++++|++|+++++|++++..++++. |+|+++ +++||+||+|+|.|+..+++++ +.++
T Consensus 206 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~----------------~~~a~~VV~a~G~~~~~l~~~~-g~~~ 268 (416)
T PRK00711 206 RLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG----------------VITADAYVVALGSYSTALLKPL-GVDI 268 (416)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc----------------EEeCCEEEECCCcchHHHHHHh-CCCc
Confidence 577889999999999999999998888764 888766 7999999999999999999887 5677
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
++.| ++|+.+.++..... ...+..+.+. ... +..+..+|++++|+..+.. .++...+.+..
T Consensus 269 pi~p----~rg~~~~~~~~~~~--~~p~~~~~~~-~~~-~~~~~~~~~~~iG~~~~~~-----------~~~~~~~~~~~ 329 (416)
T PRK00711 269 PVYP----LKGYSLTVPITDED--RAPVSTVLDE-TYK-IAITRFDDRIRVGGMAEIV-----------GFDLRLDPARR 329 (416)
T ss_pred ccCC----ccceEEEEecCCCC--CCCceeEEec-ccC-EEEeecCCceEEEEEEEec-----------CCCCCCCHHHH
Confidence 7777 99988766432111 1111111111 111 2334457889998754322 23344566678
Q ss_pred HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+.+.+.+.++||.+.+..+.+.|+|+|+. ++|+.|+||..+ .+|+|+++|++|+||++||++|+++|++|+
T Consensus 330 ~~l~~~~~~~~P~l~~~~~~~~w~G~r~~-----t~D~~PiIG~~~---~~gl~~a~G~~g~G~~~ap~~g~~la~li~ 400 (416)
T PRK00711 330 ETLEMVVRDLFPGGGDLSQATFWTGLRPM-----TPDGTPIVGATR---YKNLWLNTGHGTLGWTMACGSGQLLADLIS 400 (416)
T ss_pred HHHHHHHHHHCCCcccccccceeeccCCC-----CCCCCCEeCCcC---CCCEEEecCCchhhhhhhhhHHHHHHHHHc
Confidence 88899999999999998999999999998 678889999875 489999999999999999999999999985
No 6
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.94 E-value=2.1e-25 Score=200.48 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=153.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~ 79 (240)
+|++.|+++|++++++++|++++.. ++++ .|+|++| ++.|++||+|||+|+..+.+++ +.+
T Consensus 188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g----------------~i~a~~vVvaagg~~~~l~~~~-g~~ 250 (407)
T TIGR01373 188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG----------------FIGAKKVGVAVAGHSSVVAAMA-GFR 250 (407)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc----------------eEECCEEEECCChhhHHHHHHc-CCC
Confidence 5788999999999999999999765 4555 4888888 8999999999999999999988 556
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR 159 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
+++.| .+++++++++.. ...+..+.. ....+|++|..+|++++|...+... .++...+.+.
T Consensus 251 ~~~~~----~~~~~~~~~~~~-~~~~~~~~~----~~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~ 311 (407)
T TIGR01373 251 LPIES----HPLQALVSEPLK-PIIDTVVMS----NAVHFYVSQSDKGELVIGGGIDGYN----------SYAQRGNLPT 311 (407)
T ss_pred CCcCc----ccceEEEecCCC-CCcCCeEEe----CCCceEEEEcCCceEEEecCCCCCC----------ccCcCCCHHH
Confidence 66666 788887766431 112222211 1234688888888999997542111 2223345667
Q ss_pred HHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 160 AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 160 ~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
.+.+++.+.++||.|+...+.+.|+|+||+ ++|+.|+||..+ .+|+|+++|++|+|+++||++|+++|++|+
T Consensus 312 ~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~-----t~D~~PiIg~~~---~~gl~~a~G~~g~G~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 312 LEHVLAAILEMFPILSRVRMLRSWGGIVDV-----TPDGSPIIGKTP---LPNLYLNCGWGTGGFKATPASGTVFAHTLA 383 (407)
T ss_pred HHHHHHHHHHhCCCcCCCCeEEEecccccc-----CCCCCceeCCCC---CCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence 889999999999999998999999999998 688899999986 489999999999999999999999999985
No 7
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.94 E-value=4.4e-25 Score=198.55 Aligned_cols=202 Identities=20% Similarity=0.244 Sum_probs=147.9
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
+|++.|+++|++|+++++|++|+..++.|.+.+.++.. .+..+++||+||||+|+|+..|++++ +.+++
T Consensus 202 ~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~----------~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~ 270 (410)
T PRK12409 202 GLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAE----------HPSRTLEFDGVVVCAGVGSRALAAML-GDRVN 270 (410)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCC----------CccceEecCEEEECCCcChHHHHHHh-CCCCc
Confidence 57889999999999999999999888877765433210 00126999999999999999999988 55667
Q ss_pred cCCCceeeceeEEEEcCCCCCC-ccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 82 FIPPAYYARGCYFSLANTKVAP-FKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~~~-~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
+.| .+|++++++...... .....+.+.+.... +...+...+++++|++.+.. .++..++.+.+
T Consensus 271 i~p----~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~igg~~~~~-----------~~~~~~~~~~~ 334 (410)
T PRK12409 271 VYP----VKGYSITVNLDDEASRAAAPWVSLLDDSAK-IVTSRLGADRFRVAGTAEFN-----------GYNRDIRADRI 334 (410)
T ss_pred ccc----CCceEEEeecCCccccccCCceeeeecCCc-EEEEecCCCcEEEEEEEEec-----------CCCCCCCHHHH
Confidence 777 999998775321110 00011111111111 22223335678888764432 23444566788
Q ss_pred HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+.+++.+.++||.|++..+. .|+|+|++ ++|+.|+||..+ .+|+|+++|++|+||++||++|+++|++|.
T Consensus 335 ~~l~~~~~~~~P~l~~~~~~-~w~G~r~~-----t~D~~PiiG~~~---~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~ 404 (410)
T PRK12409 335 RPLVDWVRRNFPDVSTRRVV-PWAGLRPM-----MPNMMPRVGRGR---RPGVFYNTGHGHLGWTLSAATADLVAQVVA 404 (410)
T ss_pred HHHHHHHHHhCCCCCccccc-eecccCCC-----CCCCCCeeCCCC---CCCEEEecCCcccchhhcccHHHHHHHHHc
Confidence 99999999999999887766 69999998 678889999864 589999999999999999999999999985
No 8
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.93 E-value=8.6e-25 Score=194.11 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=150.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
++.+.+.++|++|+++++|++++..++++.|+|++| ++.||+||+|+|.|+..|+.++ .++
T Consensus 154 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~a~~vV~A~G~~~~~l~~~~---~~~ 214 (376)
T PRK11259 154 AHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG----------------TYEAKKLVVSAGAWVKDLLPPL---ELP 214 (376)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC----------------EEEeeEEEEecCcchhhhcccc---cCC
Confidence 456778889999999999999999888888999887 7999999999999999988764 455
Q ss_pred cCCCceeeceeEEEEcCCCCC--Cccce--eecCCCCCCCeeEEEeecCCc-EEEcCCccccC--Ccccccccccccccc
Q 026314 82 FIPPAYYARGCYFSLANTKVA--PFKHL--IYPIPEDGGLGVHVTLDLDGQ-IKFGPDVEWID--GIDDTLSFLNRFDYS 154 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~~--~~~~~--i~~~p~~~~~~~~~~~~~~g~-~~~G~~~~~~~--~~~~~~~~~~~~~~~ 154 (240)
+.| .+++++.+++.... ..+.. +...++ ...+|++|..+++ +++|.+..... .+.+ .....
T Consensus 215 i~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~------~~~~~ 282 (376)
T PRK11259 215 LTP----VRQVLAWFQADGRYSEPNRFPAFIWEVPD--GDQYYGFPAENGPGLKIGKHNGGQEITSPDE------RDRFV 282 (376)
T ss_pred ceE----EEEEEEEEecCCccCCccCCCEEEEecCC--CceeEeccCCCCCceEEEECCCCCCCCChhh------ccCCC
Confidence 566 99999988753210 11111 111121 2235677877787 99987653110 1100 11112
Q ss_pred cchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 155 VNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 155 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
...+..+.+.+.+.++||.+.. +.+.|+|+|+. +||+.|+||..+ +.+|+|+++|++|+|+|++|++|+++
T Consensus 283 ~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~-----t~D~~P~ig~~~--~~~gl~~~~G~~g~G~~~ap~~g~~l 353 (376)
T PRK11259 283 TVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTN-----TPDEHFIIDTLP--GHPNVLVASGCSGHGFKFASVLGEIL 353 (376)
T ss_pred CcHHHHHHHHHHHHHHCCCCCc--cccceEEeccc-----CCCCCceeecCC--CCCCEEEEecccchhhhccHHHHHHH
Confidence 2245688999999999998876 78889999997 688899999988 68999999999999999999999999
Q ss_pred HHHHh
Q 026314 235 AAKFL 239 (240)
Q Consensus 235 a~~i~ 239 (240)
|++|+
T Consensus 354 a~li~ 358 (376)
T PRK11259 354 ADLAQ 358 (376)
T ss_pred HHHHh
Confidence 99986
No 9
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.93 E-value=3e-24 Score=199.65 Aligned_cols=208 Identities=20% Similarity=0.256 Sum_probs=153.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
++++.|+++|++|+++++|++|.++++++. |++.+.. .+++.+|+|++||||||+|++.|++++ +.++
T Consensus 154 al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~----------~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~ 222 (546)
T PRK11101 154 ANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHL----------TGETQEIHAPVVVNAAGIWGQHIAEYA-DLRI 222 (546)
T ss_pred HHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcC----------CCcEEEEECCEEEECCChhHHHHHHhc-CCCC
Confidence 577899999999999999999998887654 5543211 112347999999999999999999988 5677
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA 160 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (240)
++.| .||++++++.... ...+++++.+... .++.| .++.+++|++.+.... +| ..+..++.+.+
T Consensus 223 ~i~p----~kG~~lv~~~~~~---~~vi~~~~~~~~~-~~~vp-~~~~~liGtT~~~~~~-~~------~~~~~~t~~~i 286 (546)
T PRK11101 223 RMFP----AKGSLLIMDHRIN---NHVINRCRKPADA-DILVP-GDTISLIGTTSTRIDY-DQ------IDDNRVTAEEV 286 (546)
T ss_pred ceee----cceEEEEECCccC---ceeEeccCCCCCC-CEEEe-cCCEEEEeeCCCCccC-CC------cCCCCCCHHHH
Confidence 7777 9999999975321 2234433322222 24556 4667899988754321 00 34567788999
Q ss_pred HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCC-----CC-CeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQS-----PI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~-----~~-~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
+++++.+.+++|.|...++.+.|+|+||.+.....+ .+ +++++..+.++.+|+++++|.. +|+++++|+.+
T Consensus 287 ~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGk---ltt~r~~Ae~v 363 (546)
T PRK11101 287 DILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGK---LMTYRLMAEWA 363 (546)
T ss_pred HHHHHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECCh---HHHHHHHHHHH
Confidence 999999999999999999999999999986432111 22 3567754322678999999854 99999999999
Q ss_pred HHHHh
Q 026314 235 AAKFL 239 (240)
Q Consensus 235 a~~i~ 239 (240)
++++.
T Consensus 364 ~d~v~ 368 (546)
T PRK11101 364 TDAVC 368 (546)
T ss_pred HHHHH
Confidence 99874
No 10
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.93 E-value=1.9e-24 Score=199.30 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=157.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC--
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-- 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~-- 79 (240)
+++..|+++|++|+++++|+++++.++.|.|++.++. |++++|+|+.||||||+|++.|++++.+.+
T Consensus 160 ~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-----------g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~ 228 (502)
T PRK13369 160 LNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-----------GETRTVRARALVNAAGPWVTDVIHRVAGSNSS 228 (502)
T ss_pred HHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-----------CCEEEEEecEEEECCCccHHHHHhhccCCCCC
Confidence 5678899999999999999999988887888776551 345679999999999999999988652222
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR 159 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
..+.| .||++++++...... ...+++.+ .+.-+++.|..++.+++|++....++. .++..+++++
T Consensus 229 ~~v~p----~kG~~lv~~~~~~~~-~~~~~~~~--dgr~~~i~P~~~~~~liGtTd~~~~~~--------~~~~~~~~~~ 293 (502)
T PRK13369 229 RNVRL----VKGSHIVVPKFWDGA-QAYLFQNP--DKRVIFANPYEGDFTLIGTTDIAYEGD--------PEDVAADEEE 293 (502)
T ss_pred cceEE----eeEEEEEeCCccCCC-ceEEEeCC--CCeEEEEEEecCCEEEEEecCccccCC--------CCCCCCCHHH
Confidence 34555 999999996432111 11223322 233357888867788999886543210 3567788999
Q ss_pred HHHHHHHHhhhCC-CCCCCCccccccccCCeecCC-C---CCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 160 AERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP-R---QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 160 ~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~-~---~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
++++++.++++|| .|...++.+.|+|+||.+.+. . ...++|.|..+..++.+|+++++|. ++|++++||+.+
T Consensus 294 i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~Gg---k~Tt~r~~Ae~v 370 (502)
T PRK13369 294 IDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFGG---KITTFRKLAEHA 370 (502)
T ss_pred HHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeCC---hHhhHHHHHHHH
Confidence 9999999999997 899999999999999998643 1 2247888765432256899999984 699999999999
Q ss_pred HHHHh
Q 026314 235 AAKFL 239 (240)
Q Consensus 235 a~~i~ 239 (240)
++++.
T Consensus 371 ~d~~~ 375 (502)
T PRK13369 371 LERLK 375 (502)
T ss_pred HHHHH
Confidence 99875
No 11
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.93 E-value=1.2e-25 Score=196.57 Aligned_cols=203 Identities=24% Similarity=0.245 Sum_probs=153.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|.+.++++|++|+++++|++|..++++|+ |.|++| .++||+||||+|+|+..|++++ +.+.
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g----------------~i~ad~vV~a~G~~s~~l~~~~-~~~~ 214 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG----------------EIRADRVVLAAGAWSPQLLPLL-GLDL 214 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTE----------------EEEECEEEE--GGGHHHHHHTT-TTSS
T ss_pred hhHHHHHHhhhhccccccccchhhccccccccccccc----------------ccccceeEecccccceeeeecc-cccc
Confidence 678899999999999999999999999998 999998 7999999999999999999988 4555
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecC--CCCCCCeeEEEeecCCcEEEcCCcccc-CCcccccccccccccccch
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPI--PEDGGLGVHVTLDLDGQIKFGPDVEWI-DGIDDTLSFLNRFDYSVNA 157 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~--p~~~~~~~~~~~~~~g~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (240)
++.| .+++++.+++..... ...+... ........+++|.. |.+++|+..... .... .......+...+.
T Consensus 215 ~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~--~~~~~~~~~~~~~ 286 (358)
T PF01266_consen 215 PLRP----VRGQVLVLEPPESPL-APAILFPPVIFGPSDGVYIRPRP-GGVLIGTADGNYDPGPS--PEDSSGEDPDVDE 286 (358)
T ss_dssp TEEE----EEEEEEEEEGCCSGS-SSEEEEEEECESSCTEEEEEEET-TEEEEEESECEEEESSS--HHHHSHHHHHHHH
T ss_pred cccc----cceEEEEEccCCccc-ccccccccccccccccceecccc-ccccccccccccccccc--ccccccccccccH
Confidence 5556 999999998653222 2222211 11223557888887 889998432111 1000 0000011223344
Q ss_pred hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314 158 NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237 (240)
Q Consensus 158 ~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~ 237 (240)
+ ++.+++.+.+++|.|...++.+.|+|+||. ++|+.++|+..+ +.+|+|+++|++|+||++||++|+++||+
T Consensus 287 ~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~-----t~d~~p~ig~~~--~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 287 E-IDELLERLARLLPGLGDAEVVRSWAGIRPF-----TPDGRPIIGELP--GSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp H-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEE-----ETTSECEEEEES--SEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred H-HHHhHHHHHHHHHHhhhccccccccceeee-----ccCCCeeeeecC--CCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 5 789999999999999999999999999999 477889999987 68999999999999999999999999986
No 12
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=193.10 Aligned_cols=210 Identities=34% Similarity=0.472 Sum_probs=176.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC-
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD- 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~- 79 (240)
+|++.|+++|++++++++|++|++.++++ .+.|.+|+ + +++|+.||||||.+|+.|++|++...
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~-------------~-~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE-------------E-TLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCc-------------E-EEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 68999999999999999999999998854 57787772 1 19999999999999999999995433
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA 157 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (240)
..+.| ++|+|+++++....++++.|||+|.+. +.+++++++.+|++++||++.+....+ ..+...+.
T Consensus 224 ~~~~P----~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~-------k~~~~~~~ 292 (429)
T COG0579 224 FKIFP----VRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFL-------KGDRGVDF 292 (429)
T ss_pred cccCc----cceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhh-------cccccccc
Confidence 77788 999999999865567889999999987 789999999999999999998763211 23456677
Q ss_pred hhHHHHHHHHhhhCCCCC-CCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314 158 NRAERFYPEIRKYYPDLR-DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 236 (240)
Q Consensus 158 ~~~~~~~~~~~~~~P~l~-~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~ 236 (240)
+..+.+.....+++|++. .......++|.||+...+..+..+|+|-... ..++.++.+|..++|+|.+|++++.+.+
T Consensus 293 d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~--~~~~~~~~aGiRsq~lt~~~a~~~~~~~ 370 (429)
T COG0579 293 DLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAK--DEDWFINVAGIRSQGLTADPAIAGGVLE 370 (429)
T ss_pred chhhhHHHhhhhhcccccccccchhhhheeccccccccccccceeccccc--CCCCceeeeeEEccccccChhHhhhHhh
Confidence 888999999999999998 6667788999999873225567889987555 6789999999999999999999999988
Q ss_pred HH
Q 026314 237 KF 238 (240)
Q Consensus 237 ~i 238 (240)
++
T Consensus 371 ~~ 372 (429)
T COG0579 371 LL 372 (429)
T ss_pred hc
Confidence 75
No 13
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.92 E-value=7.3e-24 Score=195.58 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=157.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-cC-CC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-IG-LD 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~~-~~ 79 (240)
++++.|+++|++++++++|+++.++++.|.|++.+.. +|++.+|+|+.||||||+|++++++++ +. .+
T Consensus 160 ~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~----------~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~ 229 (508)
T PRK12266 160 LNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTA----------TGKRYTVRARALVNAAGPWVKQFLDDGLGLPSP 229 (508)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcC----------CCCEEEEEcCEEEECCCccHHHHHhhccCCCCC
Confidence 4678899999999999999999988887877765421 123457999999999999999998754 31 23
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR 159 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
.++.| .||++++++..... ....+++.+ .+..+++.|..+|.+++|++.+...+. ..+..++.++
T Consensus 230 ~~i~p----~kG~~lvl~~~~~~-~~~~~~~~~--dgr~v~~~P~~~g~~liGttd~~~~~~--------~~~~~~~~~~ 294 (508)
T PRK12266 230 YGIRL----VKGSHIVVPRLFDH-DQAYILQNP--DGRIVFAIPYEDDFTLIGTTDVEYKGD--------PAKVAISEEE 294 (508)
T ss_pred cceee----eeeEEEEECCcCCC-CcEEEEeCC--CCCEEEEEEeCCCeEEEecCCCCCCCC--------CCCCCCCHHH
Confidence 44555 99999998653211 112233333 234456788878899999876432210 3456678899
Q ss_pred HHHHHHHHhhhCC-CCCCCCccccccccCCeecCC----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 160 AERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 160 ~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
++++++.++++|| .|...++.+.|+|+||++.+. ....++|+|..+..++.+|++.++|.. +|+++.|||.+
T Consensus 295 i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk---~Tt~r~mAe~~ 371 (508)
T PRK12266 295 IDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGGK---ITTYRKLAEHA 371 (508)
T ss_pred HHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcCh---HHHHHHHHHHH
Confidence 9999999999996 899999999999999998653 233588988665323678999999865 99999999999
Q ss_pred HHHHh
Q 026314 235 AAKFL 239 (240)
Q Consensus 235 a~~i~ 239 (240)
++++.
T Consensus 372 ~~~~~ 376 (508)
T PRK12266 372 LEKLA 376 (508)
T ss_pred HHHHH
Confidence 99875
No 14
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.92 E-value=1.5e-24 Score=198.12 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=146.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
+|++.|+++|++|+++++|++|+. ++.+.|+|++| +++||+||+|+|+|+..+.+.+ ...
T Consensus 188 ~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g----------------~v~A~~VV~Atga~s~~l~~~~---~~~ 247 (460)
T TIGR03329 188 GLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG----------------QVTADKVVLALNAWMASHFPQF---ERS 247 (460)
T ss_pred HHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc----------------EEECCEEEEcccccccccChhh---cCe
Confidence 578899999999999999999975 55677889888 7999999999999999988766 233
Q ss_pred cCCCceeeceeEEEEcCCCCCCccceeec----CCCCCCCeeEEEeecCCcEEEcCCccccC-Ccccccccccccccccc
Q 026314 82 FIPPAYYARGCYFSLANTKVAPFKHLIYP----IPEDGGLGVHVTLDLDGQIKFGPDVEWID-GIDDTLSFLNRFDYSVN 156 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~~~~~~~i~~----~p~~~~~~~~~~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~ 156 (240)
+.| ++++++++++.. ........+ +.+......|+++..+|++++|....... ...+ .......
T Consensus 248 ~~p----~~~~~~~t~pl~-~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~------~~~~~~~ 316 (460)
T TIGR03329 248 IAI----VSSDMVITEPAP-DLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRM------LPVFNQP 316 (460)
T ss_pred EEE----eccceEecCCCc-HHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCccc------ccccCCc
Confidence 445 777877766532 111111111 11111122477888788999986432110 0000 0001111
Q ss_pred hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314 157 ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 236 (240)
Q Consensus 157 ~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~ 236 (240)
....+.+.+.+.++||.|.+..+.+.|+|++++ ++|..|+||..+ ..+|+|+++|++|+|+++|+++|+++|+
T Consensus 317 ~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~-----t~D~~P~iG~~~--~~~gl~~a~G~~G~Gv~~a~~~G~~lA~ 389 (460)
T TIGR03329 317 SPYEALLTRSLRKFFPALAEVPIAASWNGPSDR-----SVTGLPFFGRLN--GQPNVFYGFGYSGNGVAPSRMGGQILSS 389 (460)
T ss_pred hHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC-----CCCCCceeeeec--CCCCEEEEeCcCCCChhHHHHHHHHHHH
Confidence 233567889999999999999999999999998 678889999887 5789999999999999999999999999
Q ss_pred HHh
Q 026314 237 KFL 239 (240)
Q Consensus 237 ~i~ 239 (240)
+|+
T Consensus 390 li~ 392 (460)
T TIGR03329 390 LVL 392 (460)
T ss_pred Hhc
Confidence 985
No 15
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=2.4e-23 Score=185.15 Aligned_cols=203 Identities=13% Similarity=0.087 Sum_probs=147.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
+|.+.++++|++++++++|++|+.+++++.|+++++ ++.||.||+|+|.|+..|++++ +..++
T Consensus 150 ~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~----------------~i~a~~vV~aaG~~~~~l~~~~-g~~~~ 212 (380)
T TIGR01377 150 ALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG----------------SYQANKLVVTAGAWTSKLLSPL-GIEIP 212 (380)
T ss_pred HHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC----------------EEEeCEEEEecCcchHHHhhhc-ccCCC
Confidence 567888899999999999999998888888888776 7999999999999999999988 55666
Q ss_pred cCCCceeeceeEEEEcCCCCCC--c--cceeecCCCCCCCeeEEEeecCC-cEEEcCCcc-ccCCccccccccccccccc
Q 026314 82 FIPPAYYARGCYFSLANTKVAP--F--KHLIYPIPEDGGLGVHVTLDLDG-QIKFGPDVE-WIDGIDDTLSFLNRFDYSV 155 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~~~--~--~~~i~~~p~~~~~~~~~~~~~~g-~~~~G~~~~-~~~~~~~~~~~~~~~~~~~ 155 (240)
+.| .+++...+....... + ....+..... ...+|+.|..++ +++++.... ...++.. ..++...
T Consensus 213 ~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 282 (380)
T TIGR01377 213 LQP----LRINVCYWREKEPGSYGVSQAFPCFLVLGL-NPHIYGLPSFEYPGLMKVYYHHGQQIDPDE-----RDCPFGA 282 (380)
T ss_pred ceE----EEEEEEEEecCCccccCccCCCCEEEEeCC-CCceEecCCCCCCceEEEEeCCCCccCccc-----ccCCCCC
Confidence 666 888876664321110 0 0111111111 123667776542 456553221 1001000 0223345
Q ss_pred chhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHH
Q 026314 156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA 235 (240)
Q Consensus 156 ~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va 235 (240)
+.+.++.+.+.+.+++|.|.... .+.|.|+|+. +||..|+||..+ +.+|+|+++|++|+||++||++|+++|
T Consensus 283 ~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~-----t~D~~piIg~~p--~~~~l~va~G~~g~G~~~~p~~g~~la 354 (380)
T TIGR01377 283 DIEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTN-----TPDEHFVIDLHP--KYDNVVIGAGFSGHGFKLAPVVGKILA 354 (380)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEecc-----CCCCCeeeecCC--CCCCEEEEecCCccceeccHHHHHHHH
Confidence 66788999999999999998544 5679999987 688999999998 789999999999999999999999999
Q ss_pred HHHh
Q 026314 236 AKFL 239 (240)
Q Consensus 236 ~~i~ 239 (240)
|+|.
T Consensus 355 ~li~ 358 (380)
T TIGR01377 355 ELAM 358 (380)
T ss_pred HHHh
Confidence 9985
No 16
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.91 E-value=3.5e-23 Score=194.94 Aligned_cols=206 Identities=19% Similarity=0.195 Sum_probs=154.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL 78 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~ 78 (240)
+|++.|+++|++|+++++|+++... ++++. |++.+.. .+++++|.||.||||||+|++.|++++++.
T Consensus 237 al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~----------tg~~~~i~a~~VVnAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 237 ALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL----------TGKEFDVYAKVVVNAAGPFCDEVRKMADGK 306 (627)
T ss_pred HHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC----------CCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence 6889999999999999999999876 35443 5442211 122446899999999999999999998422
Q ss_pred C-CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314 79 D-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA 157 (240)
Q Consensus 79 ~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (240)
. ..+.| .||+|++++....+.....+++... .+..+++.|. +|.+++|++.+..+. ..+..+++
T Consensus 307 ~~~~I~p----~kG~hlvl~~~~~~~~~~~i~~~~~-dgr~~~~~P~-~g~~liGtTd~~~~~---------~~~~~~t~ 371 (627)
T PLN02464 307 AKPMICP----SSGVHIVLPDYYSPEGMGLIVPKTK-DGRVVFMLPW-LGRTVAGTTDSKTPI---------TMLPEPHE 371 (627)
T ss_pred CCCceEe----eeeEEEecccccCCCCceEEecCCC-CCCEEEEEec-CCcEEEecCCCCCCC---------CCCCCCCH
Confidence 2 22445 9999999864321211234555322 3455788887 889999988765432 44666788
Q ss_pred hhHHHHHHHHhhhCC-CCCCCCccccccccCCeecCC-----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHH
Q 026314 158 NRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP-----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIA 231 (240)
Q Consensus 158 ~~~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g 231 (240)
++++++++.++++|| .|...+|.+.|+|+||++.++ ..+.++++|-.+. +|++.++|.. +|+++.+|
T Consensus 372 ~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~----~gli~i~GGk---~Tt~R~mA 444 (627)
T PLN02464 372 DEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEP----DGLVTITGGK---WTTYRSMA 444 (627)
T ss_pred HHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecC----CCeEEEECCh---HHHHHHHH
Confidence 999999999999999 799999999999999998653 1235777775432 5899999876 99999999
Q ss_pred HHHHHHHh
Q 026314 232 EYVAAKFL 239 (240)
Q Consensus 232 ~~va~~i~ 239 (240)
|.+.|.+.
T Consensus 445 e~~~d~~~ 452 (627)
T PLN02464 445 EDAVDAAI 452 (627)
T ss_pred HHHHHHHH
Confidence 99999875
No 17
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.91 E-value=2.8e-23 Score=184.90 Aligned_cols=202 Identities=21% Similarity=0.180 Sum_probs=154.2
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|++.++++| +.++.+++|+.++..++.+.|.|.+| +++|++||+|+|+|+..+..+++..++
T Consensus 161 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g----------------~i~a~~vv~a~G~~~~~l~~~~~~~~~ 224 (387)
T COG0665 161 ALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG----------------TIEADKVVLAAGAWAGELAATLGELPL 224 (387)
T ss_pred HHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc----------------cEEeCEEEEcCchHHHHHHHhcCCCcC
Confidence 6788999999 57777999999987435577999998 799999999999999999998832556
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh--
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN-- 158 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (240)
++.| .+++++.+++.....................|++|..++++++|.+.+.... .+.....+
T Consensus 225 ~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~----------~~~~~~~~~~ 290 (387)
T COG0665 225 PLRP----VRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGD----------DPSDPEREDL 290 (387)
T ss_pred cccc----ccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCC----------CCccccCcch
Confidence 6777 9999999986532111110000111123446888888899999987654311 11111112
Q ss_pred hHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314 159 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238 (240)
Q Consensus 159 ~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i 238 (240)
....+++.+.+++|.|....+.+.|+|.|+.+ +||+.++||... ..+|+|+++|++++|+++||++|+++|++|
T Consensus 291 ~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t----~pd~~P~iG~~~--~~~~l~~a~G~~~~G~~~~p~~g~~lA~li 364 (387)
T COG0665 291 VIAELLRVARALLPGLADAGIEAAWAGLRPPT----TPDGLPVIGRAA--PLPNLYVATGHGGHGFTLAPALGRLLADLI 364 (387)
T ss_pred hHHHHHHHHHHhCccccccccceeeeccccCC----CCCCCceeCCCC--CCCCEEEEecCCCcChhhccHHHHHHHHHH
Confidence 46799999999999999999999999999973 378899999633 268999999999999999999999999998
Q ss_pred h
Q 026314 239 L 239 (240)
Q Consensus 239 ~ 239 (240)
+
T Consensus 365 ~ 365 (387)
T COG0665 365 L 365 (387)
T ss_pred c
Confidence 6
No 18
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.91 E-value=1.1e-23 Score=200.11 Aligned_cols=190 Identities=17% Similarity=0.115 Sum_probs=150.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
+|.+.+++ |++++++++|++++..+++|.|+|+++. .++|+.||+|+|.|+..+.++. .++
T Consensus 413 aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~---------------~~~ad~VV~A~G~~s~~l~~~~---~lp 473 (662)
T PRK01747 413 ALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGT---------------LASAPVVVLANGHDAARFAQTA---HLP 473 (662)
T ss_pred HHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCc---------------EEECCEEEECCCCCcccccccc---CCC
Confidence 57778888 9999999999999988888999887772 4789999999999999887643 456
Q ss_pred cCCCceeeceeEEEEcCCCCC-CccceeecCCCCCCCeeEEEe-ecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314 82 FIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTL-DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR 159 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~~~~~~~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
+.| +||+++.++..... ..+..+ ..+.|++| ..+|.+++|.+.+.. ..+..++.+.
T Consensus 474 l~p----~RGqv~~~~~~~~~~~~~~~~-------~~~~Y~~p~~~~g~~~iGat~~~~-----------~~~~~~~~~~ 531 (662)
T PRK01747 474 LYS----VRGQVSHLPTTPALSALKQVL-------CYDGYLTPQPANGTHCIGASYDRD-----------DTDTAFREAD 531 (662)
T ss_pred ccc----ccceEEeecCCccccccCcee-------ECCceeCCCCCCCceEeCcccCCC-----------CCCCCCCHHH
Confidence 677 99999988653211 111111 11247888 678889999875432 3344566777
Q ss_pred HHHHHHHHhhhCCCC-----CCCCccccccccCCeecCCCCCCCCeEEec----------------------CCCCCCCC
Q 026314 160 AERFYPEIRKYYPDL-----RDGSLQPSYAGIRPKLSGPRQSPIDFVIQG----------------------DDTHGVPG 212 (240)
Q Consensus 160 ~~~~~~~~~~~~P~l-----~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~----------------------~~~~~~~~ 212 (240)
.+.+++.+.+++|.+ .+..+.+.|+|+|+. ++|+.|+||. .+ ..+|
T Consensus 532 ~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~-----tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~--~~~g 604 (662)
T PRK01747 532 HQENLERLAECLPQALWAKEVDVSALQGRVGFRCA-----SRDRLPMVGNVPDEAATLAEYAALANQQPARDAP--RLPG 604 (662)
T ss_pred HHHHHHHHHHhCCCchhhhccCccccCceEEEecc-----CCCcccccCCCCCHHHHHHHHHhhhhccccccCC--CCCC
Confidence 888999999999987 466778899999998 6788899998 44 5789
Q ss_pred EEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 213 LVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 213 ~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+|+++|++|+||++||++|+++|++|.
T Consensus 605 l~v~~G~gs~Gl~~ap~~a~~lA~li~ 631 (662)
T PRK01747 605 LYVAGALGSRGLCSAPLGAELLASQIE 631 (662)
T ss_pred eEEEecccccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999985
No 19
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.91 E-value=8e-24 Score=178.26 Aligned_cols=219 Identities=34% Similarity=0.481 Sum_probs=177.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCe---E--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-c
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNC---M--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-I 76 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~---~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~ 76 (240)
+.+.-+..|.++.++.+|.++...... + +|.-..+ + +++++.||.|||..++++++.. +
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~---e------------e~r~~~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKG---E------------EKRTKNVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEecCcc---c------------eeEEeEEEEeccccHhHHHHHhCC
Confidence 556678889999999999999876642 2 3333333 2 7999999999999999999988 3
Q ss_pred CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCcccc---------C-Ccccc
Q 026314 77 GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWI---------D-GIDDT 144 (240)
Q Consensus 77 ~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~---------~-~~~~~ 144 (240)
..+..++| ++|.|+.+.++....+++.|||+|+++ +.++|++|..+|.+++|+++... + ...|+
T Consensus 267 ~~dPriVp----frG~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~ 342 (453)
T KOG2665|consen 267 ELDPRIVP----FRGEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDL 342 (453)
T ss_pred CCCCeeee----ccchhhhcChHHhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccch
Confidence 45667888 999999998876677888999999988 57899999999999999987311 1 01122
Q ss_pred cc----------cccccccccchhhHHHHH----HHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCC
Q 026314 145 LS----------FLNRFDYSVNANRAERFY----PEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHG 209 (240)
Q Consensus 145 ~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~ 209 (240)
++ +.+.|++.+++...+.++ .++++|+|+|++.++.+..+|+|.+.-+. ++..+||+++....+.
T Consensus 343 ~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~ 422 (453)
T KOG2665|consen 343 VEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHL 422 (453)
T ss_pred hhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCcccc
Confidence 21 236788888876666555 99999999999999999999999776655 6777899998887778
Q ss_pred CCCEEEEeCCCCchHhhhHHHHHHHHHHHhC
Q 026314 210 VPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 240 (240)
Q Consensus 210 ~~~~~~~~G~~~~G~t~ap~~g~~va~~i~~ 240 (240)
.++++++.+..++|.|+|.+||+++|+.+++
T Consensus 423 ~p~llh~rnapSPgaTSSlAIa~mIa~k~~~ 453 (453)
T KOG2665|consen 423 VPRLLHVRNAPSPGATSSLAIAKMIADKFLN 453 (453)
T ss_pred ccceEEecCCCCccchhhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999875
No 20
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.91 E-value=5.5e-23 Score=186.82 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=162.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC-C-
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL-D- 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~-~- 79 (240)
.+++.|.++|++++++++|+++.++++-|.|...+.. +|++++|+|+.||||||+|++++.++++.. .
T Consensus 169 ~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~----------tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~ 238 (532)
T COG0578 169 ANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE----------TGETYEIRARAVVNAAGPWVDEILEMAGLEQSP 238 (532)
T ss_pred HHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC----------CCcEEEEEcCEEEECCCccHHHHHHhhcccCCC
Confidence 4678899999999999999999999985557776652 366889999999999999999999998321 1
Q ss_pred -CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314 80 -NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN 158 (240)
Q Consensus 80 -~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
..+.| .||.|+++++. .+.....+++++.+ ...+++.|. ++..++|++....++. +.+..++++
T Consensus 239 ~~~vr~----skGsHlVv~~~-~~~~~a~~~~~~~d-~r~~f~iP~-~~~~liGTTD~~~~~~--------~~~~~~~~e 303 (532)
T COG0578 239 HIGVRP----SKGSHLVVDKK-FPINQAVINRCRKD-GRIVFAIPY-EGKTLIGTTDTDYDGD--------PEDPRITEE 303 (532)
T ss_pred Ccccee----ccceEEEeccc-CCCCceEEeecCCC-CceEEEecC-CCCEEeeccccccCCC--------cccCCCCHH
Confidence 24556 99999999872 22233456666642 344566764 6777999998765441 457778999
Q ss_pred hHHHHHHHHhhh-CCCCCCCCccccccccCCeecCC----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHH
Q 026314 159 RAERFYPEIRKY-YPDLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEY 233 (240)
Q Consensus 159 ~~~~~~~~~~~~-~P~l~~~~i~~~~aG~r~~~~~~----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~ 233 (240)
+++++++.++++ -|.|...+|.++|+|+||++.+. ..-.+++.|-.+. +.+|++.++|.. +|+...+||.
T Consensus 304 Eidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~--~~~glltv~GGK---lTTyR~maE~ 378 (532)
T COG0578 304 EIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHA--ELAGLLTVAGGK---LTTYRKMAED 378 (532)
T ss_pred HHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecC--CCCCeEEEecch---hHHhHHHHHH
Confidence 999999999944 48899999999999999998742 2235788876665 367999999877 9999999999
Q ss_pred HHHHHh
Q 026314 234 VAAKFL 239 (240)
Q Consensus 234 va~~i~ 239 (240)
+++++.
T Consensus 379 a~d~v~ 384 (532)
T COG0578 379 ALDAVC 384 (532)
T ss_pred HHHHHH
Confidence 999874
No 21
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.89 E-value=9.2e-23 Score=185.50 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=156.5
Q ss_pred ChhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314 1 MWVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD 79 (240)
Q Consensus 1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~ 79 (240)
|+|+++|+++||+|.++|+|++|....++ +.|+|..| .|+|.+||||||.|++.+.+|. +.+
T Consensus 191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G----------------~iet~~~VNaaGvWAr~Vg~m~-gvk 253 (856)
T KOG2844|consen 191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG----------------SIETECVVNAAGVWAREVGAMA-GVK 253 (856)
T ss_pred HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc----------------ceecceEEechhHHHHHhhhhc-CCc
Confidence 68999999999999999999999887765 56999999 8999999999999999999998 578
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeecCCCCC-CCeeEEEeecCCcEEEcCCccccCCcccccc-cccccccccch
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG-GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLS-FLNRFDYSVNA 157 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (240)
.+.+| +..+|+++++-.. +... +.|..+ ..+..+.+...+.+++|+.+...-..+.... +.... ..+|.
T Consensus 254 vPL~p----~~H~YvvT~~IeG--i~s~--t~p~irD~DgSvylR~~~~gil~GGyE~n~i~~egv~~~~~~~l-qE~DW 324 (856)
T KOG2844|consen 254 VPLVP----MHHAYVVTSRIEG--VSSL--TRPNIRDLDGSVYLRQQGDGILFGGYESNPIFTEGVPPGFATGL-QEPDW 324 (856)
T ss_pred cccee----eeeeEEEecccCC--ccCC--CccceecccceEEEEecCCceeccccccCceeccccCCcccccc-ccccH
Confidence 77777 9999999876421 1110 111111 3333444555678888887532100000000 00011 12677
Q ss_pred hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314 158 NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237 (240)
Q Consensus 158 ~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~ 237 (240)
+..+..++.+.+++|.|+..++.+.-+|...+ |||.-+++|+++ +..|+|+++|+++.|++++-++|+.++++
T Consensus 325 d~F~~hlesai~r~P~l~k~~i~~~v~gpe~f-----tPD~~p~mGe~p--~~~gy~v~~G~ns~G~~~~GG~Gk~la~w 397 (856)
T KOG2844|consen 325 DHFEPHLEAAIERVPVLEKAGIKSLVNGPETF-----TPDHLPIMGESP--EVRGYWVACGFNSAGLSFGGGCGKYLAEW 397 (856)
T ss_pred hhhHHHHHHHHHhCchhhhcCccceecCcccc-----CCccccccCCCc--cccceEEeecCCccceeccCchhHHHHHH
Confidence 78889999999999999998887766665554 789999999999 89999999999999999999999999999
Q ss_pred Hh
Q 026314 238 FL 239 (240)
Q Consensus 238 i~ 239 (240)
|.
T Consensus 398 i~ 399 (856)
T KOG2844|consen 398 II 399 (856)
T ss_pred hh
Confidence 85
No 22
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.89 E-value=2.8e-22 Score=177.56 Aligned_cols=186 Identities=18% Similarity=0.207 Sum_probs=133.0
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|++.++++ |++|+++++|++|+.. .|+|++| +++||+||+|+|+|+..|++.+ ..++
T Consensus 150 ~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-~~~~ 208 (365)
T TIGR03364 150 ALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG----------------DVHADQVFVCPGADFETLFPEL-FAAS 208 (365)
T ss_pred HHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC----------------cEEeCEEEECCCCChhhhCcch-hhcc
Confidence 466777775 9999999999999642 6788877 6899999999999999988766 3456
Q ss_pred ccCCCceeeceeEEEEcCCCCCCccceee--------------------------cCCC--CCCCeeEEEeecCCcEEEc
Q 026314 81 VFIPPAYYARGCYFSLANTKVAPFKHLIY--------------------------PIPE--DGGLGVHVTLDLDGQIKFG 132 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~--------------------------~~p~--~~~~~~~~~~~~~g~~~~G 132 (240)
++.| +|++++.+++.....+...+. +.|. .....++++|..+|++++|
T Consensus 209 ~~~p----~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG 284 (365)
T TIGR03364 209 GVRR----CKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIG 284 (365)
T ss_pred Ccce----EEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEec
Confidence 6777 999999987642111111000 0011 1133468899889999999
Q ss_pred CCccccCCcccccccccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCC
Q 026314 133 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPG 212 (240)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~ 212 (240)
++.++..... .. .+.+..+.+.+.+.+++ .|.+.++.+.|+|+||. +++..++++. ..+|
T Consensus 285 ~~~~~~~~~~-------~~---~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~-----t~d~~~v~~~----~~~g 344 (365)
T TIGR03364 285 DSHEYGLAPD-------PF---DDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYAS-----SPPAPIFLER----PDDG 344 (365)
T ss_pred CcccccCCCC-------Cc---chHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecC-----CCCCCceecC----CCCC
Confidence 8765432100 11 12334456777777766 68888999999999998 5655566653 2589
Q ss_pred EEEEeCCCCchHhhhHHHHH
Q 026314 213 LVNLFGIESPGLTSSMAIAE 232 (240)
Q Consensus 213 ~~~~~G~~~~G~t~ap~~g~ 232 (240)
+|+++|++|+|+++||++|+
T Consensus 345 ~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 345 VTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred eEEEEecCCCcccccccccC
Confidence 99999999999999999986
No 23
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.86 E-value=1.3e-20 Score=172.43 Aligned_cols=218 Identities=20% Similarity=0.206 Sum_probs=155.0
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEe-CCeEEEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLE-GNCMNVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI 76 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~-~~~~~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~ 76 (240)
+|++.+.+ .|++++++++|++|++. ++.|+|+ +..+ +..+++||+||||||+|++.|++++|
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g-------------~~~~i~Ad~VV~AAGawS~~La~~~G 255 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTG-------------EKREQVADYVFIGAGGGAIPLLQKSG 255 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCC-------------ceEEEEcCEEEECCCcchHHHHHHcC
Confidence 57777865 49999999999999887 6678775 3333 11258999999999999999999994
Q ss_pred CC---CCccCCCceeeceeEEEEcCCCCCCcc---ceeecCCCCCC--Cee-EE-EeecCCc--EEEcCCccccCC----
Q 026314 77 GL---DNVFIPPAYYARGCYFSLANTKVAPFK---HLIYPIPEDGG--LGV-HV-TLDLDGQ--IKFGPDVEWIDG---- 140 (240)
Q Consensus 77 ~~---~~~~~p~~~~~~g~~~~~~~~~~~~~~---~~i~~~p~~~~--~~~-~~-~~~~~g~--~~~G~~~~~~~~---- 140 (240)
.. .+.++| ++|+|+.++++ ..+. ..||+++++.. ..+ |+ ++..+|+ ++|||++.+...
T Consensus 256 i~~~~~~~i~P----vkGq~l~l~~~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~ 329 (497)
T PRK13339 256 IPESKHLGGFP----ISGQFLRCTNP--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKH 329 (497)
T ss_pred CCccCCCceEe----eeEEEEEecCH--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhcc
Confidence 32 267788 99999999863 3333 35899987642 222 44 5566785 899999875311
Q ss_pred --cccccccc-------------ccc---ccccch--hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCC
Q 026314 141 --IDDTLSFL-------------NRF---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPID 199 (240)
Q Consensus 141 --~~~~~~~~-------------~~~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~ 199 (240)
..|++... +.+ .+...+ .....+++.+++|+|.+...++....+|+|+++.+. +...+|
T Consensus 330 ~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~d 409 (497)
T PRK13339 330 GSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKG 409 (497)
T ss_pred CCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCC
Confidence 12222111 011 111111 124567889999999999999999999999999876 555557
Q ss_pred eEE-ecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314 200 FVI-QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238 (240)
Q Consensus 200 ~ii-~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i 238 (240)
|++ |.......++.+++....|||+|+|..+|+.+++.+
T Consensus 410 fl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~ 449 (497)
T PRK13339 410 FIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERN 449 (497)
T ss_pred EEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHH
Confidence 864 443222356888888889999999999999999864
No 24
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.85 E-value=5.3e-20 Score=168.74 Aligned_cols=217 Identities=20% Similarity=0.239 Sum_probs=151.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC--
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL-- 78 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~-- 78 (240)
+|++.++++|++|+++++|++|++.+ +.|.|++.+.. .++..+++|++||||||+|++.|++++|..
T Consensus 183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~----------~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~ 252 (483)
T TIGR01320 183 QLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTR----------TGGKRTLNTRFVFVGAGGGALPLLQKSGIPEV 252 (483)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeecc----------CCceEEEECCEEEECCCcchHHHHHHcCCCcC
Confidence 67889999999999999999999865 46776543210 111236999999999999999999998422
Q ss_pred -CCccCCCceeeceeEEEEcCC-CCCCccceeecCCCCCC--Cee-EE-EeecCCcEE--EcCCcccc-----CCc-ccc
Q 026314 79 -DNVFIPPAYYARGCYFSLANT-KVAPFKHLIYPIPEDGG--LGV-HV-TLDLDGQIK--FGPDVEWI-----DGI-DDT 144 (240)
Q Consensus 79 -~~~~~p~~~~~~g~~~~~~~~-~~~~~~~~i~~~p~~~~--~~~-~~-~~~~~g~~~--~G~~~~~~-----~~~-~~~ 144 (240)
.+.++| ++|+|+.++.+ .....+..||++|++.. .++ |+ .+..+|+.. |||++.+. ++. .|+
T Consensus 253 ~~~~i~P----~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~ 328 (483)
T TIGR01320 253 KGFAGFP----VSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDL 328 (483)
T ss_pred CCCceee----eeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHH
Confidence 356677 99999999754 22344567999998753 333 44 444567655 99998721 111 132
Q ss_pred cc---cc----------cc---cccccc--hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCC-----C-CC
Q 026314 145 LS---FL----------NR---FDYSVN--ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQS-----P-ID 199 (240)
Q Consensus 145 ~~---~~----------~~---~~~~~~--~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~-----~-~~ 199 (240)
+. +. +. ..+... .......++.+++++|.+..+++....+|+|+++.+. ++. + ++
T Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~ 408 (483)
T TIGR01320 329 PLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGT 408 (483)
T ss_pred hhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCC
Confidence 11 00 00 011111 0122345788999999999999999999999999864 222 1 35
Q ss_pred eEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314 200 FVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237 (240)
Q Consensus 200 ~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~ 237 (240)
++|.. .++.+++....|||+|+|..+|+.+++.
T Consensus 409 ~~i~~-----~~~~~~~l~~~SPgaTss~~i~~~v~~~ 441 (483)
T TIGR01320 409 TLIAD-----ADGSIAGLLGASPGASTAVSIMLDLLER 441 (483)
T ss_pred eEEEC-----CCCeEEEecCCCchHHhhHHHHHHHHHH
Confidence 56653 3588888888999999999999999985
No 25
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.85 E-value=1.7e-20 Score=171.92 Aligned_cols=209 Identities=22% Similarity=0.328 Sum_probs=155.7
Q ss_pred hhhHHHHH----CC--cEEEcCceEEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHH
Q 026314 2 WVQGEAEN----HG--TTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 74 (240)
Q Consensus 2 al~~~A~~----~G--a~i~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~ 74 (240)
+|++.|++ +| ++|+++++|++|++. ++.|.|+|++| +++||+||||||+|+..|+++
T Consensus 216 al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G----------------~i~A~~VVvaAG~~S~~La~~ 279 (497)
T PTZ00383 216 SFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG----------------EIRARFVVVSACGYSLLFAQK 279 (497)
T ss_pred HHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC----------------EEEeCEEEECcChhHHHHHHH
Confidence 57888888 88 789999999999988 45678999888 899999999999999999999
Q ss_pred hc-CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeec--CCcEEEcCCccccC---Cc--c--
Q 026314 75 FI-GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL--DGQIKFGPDVEWID---GI--D-- 142 (240)
Q Consensus 75 ~~-~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~--~g~~~~G~~~~~~~---~~--~-- 142 (240)
+| +.++.++| ++|+|+.++. .++..||++|++. +.++|+.++. +|+++|||++.+.. .+ .
T Consensus 280 ~Gi~~~~~i~P----v~G~~~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~ 351 (497)
T PTZ00383 280 MGYGLEYSCLP----VAGSFYFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSL 351 (497)
T ss_pred hCCCCCCCEEe----cCceEEEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCch
Confidence 84 35788888 9999998752 4678899998864 5678888884 78899999985321 11 1
Q ss_pred -cccccccc--------cc----------------cccchhhHHHHHHHHhhhCCCCCCCCccc--cccccCCeecCCCC
Q 026314 143 -DTLSFLNR--------FD----------------YSVNANRAERFYPEIRKYYPDLRDGSLQP--SYAGIRPKLSGPRQ 195 (240)
Q Consensus 143 -~~~~~~~~--------~~----------------~~~~~~~~~~~~~~~~~~~P~l~~~~i~~--~~aG~r~~~~~~~~ 195 (240)
|.+...+. ++ ..+.......+++.+++++|.+..+++.. .++|+|+++.+.
T Consensus 352 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~-- 429 (497)
T PTZ00383 352 PDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDK-- 429 (497)
T ss_pred HHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEEC--
Confidence 11110000 00 00001234567788999999999999986 466999999873
Q ss_pred CCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314 196 SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237 (240)
Q Consensus 196 ~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~ 237 (240)
.++.+++|.......+|++...| .|||.|+|...|+.=+..
T Consensus 430 ~~~~L~~g~~~i~~~~~~i~~~~-~spgast~l~~~~~d~~~ 470 (497)
T PTZ00383 430 VSKKLLLGEGKIDPGKGIIFNIT-PSPGATTCLGNAESDMRE 470 (497)
T ss_pred CCCeEecCceEEecCCCcEEecc-CCCcHHHHHHHHHHHHHH
Confidence 33457778776656778887776 789999999988754433
No 26
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=154.21 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=150.7
Q ss_pred ChhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccC------CCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314 1 MWVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNW------DGVSPLQPELTLIPKLVVNSAGLSAPALAK 73 (240)
Q Consensus 1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~------~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~ 73 (240)
+++.+.|..+||.+. +-+|++++-+..+ +.+.|+++.+.... -++.+......+++..+|||||+|+.++++
T Consensus 247 s~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvAr 325 (509)
T KOG2853|consen 247 SGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVAR 325 (509)
T ss_pred HHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHH
Confidence 356788999999998 5789998877543 34555555210000 002222334679999999999999999999
Q ss_pred Hhc--------CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeec-CCcEEEcCCccccCCcccc
Q 026314 74 RFI--------GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDL-DGQIKFGPDVEWIDGIDDT 144 (240)
Q Consensus 74 ~~~--------~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-~g~~~~G~~~~~~~~~~~~ 144 (240)
+++ ..++++.| .|.+.++.-.+..+-++. |+-.+ ..+++++++. +|+.++|......+.++
T Consensus 326 lAgIG~g~g~L~vplPiep----RKRyvyvi~~~~~PGl~~---Pl~iD-psG~f~Rrdglg~nfl~grsp~ed~~~d-- 395 (509)
T KOG2853|consen 326 LAGIGKGPGLLAVPLPIEP----RKRYVYVIFAPDVPGLDT---PLTID-PSGVFFRRDGLGGNFLCGRSPSEDEEPD-- 395 (509)
T ss_pred HhccCCCCceeeecccCCc----cceeEEEEeCCCCCCCCC---ceeEC-CCccEEEecCCCCceecccCCccccCCC--
Confidence 983 12556666 888877765432221221 21111 1267888875 45677764421111110
Q ss_pred cccccccccccch-hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCch
Q 026314 145 LSFLNRFDYSVNA-NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPG 223 (240)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G 223 (240)
..+..+|. ...+.++.++...+|.+...+|..+|+|.... +|-|...+||.+| -+.|++.++|++|||
T Consensus 396 -----~~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~----NtfD~ngViG~HP--~y~Nly~atGFsghG 464 (509)
T KOG2853|consen 396 -----HSNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDH----NTFDDNGVIGEHP--LYTNLYMATGFSGHG 464 (509)
T ss_pred -----ccccccChHHHHhhhhHHHHhcccccceeeeeehhcccccc----cccccCCcccCCc--ceeeeeeeecccccc
Confidence 23334443 35667889999999999999999999999765 5778889999999 789999999999999
Q ss_pred HhhhHHHHHHHHHHHh
Q 026314 224 LTSSMAIAEYVAAKFL 239 (240)
Q Consensus 224 ~t~ap~~g~~va~~i~ 239 (240)
++.+|++|+.+||+|+
T Consensus 465 vqqs~avgRAiaElIl 480 (509)
T KOG2853|consen 465 VQQSPAVGRAIAELIL 480 (509)
T ss_pred hhcchHHHHHHHHHHh
Confidence 9999999999999986
No 27
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.81 E-value=5.8e-19 Score=162.13 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=150.1
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC-
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL- 78 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~- 78 (240)
+|++.++++| ++|+++++|++|++.++ .|.|++.+.. .|+..+++|++||||||+|++.|+++++..
T Consensus 188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~----------~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~ 257 (494)
T PRK05257 188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLK----------TGEKRTVRAKFVFIGAGGGALPLLQKSGIPE 257 (494)
T ss_pred HHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcC----------CCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence 5788888887 89999999999998655 4876653210 011225999999999999999999998422
Q ss_pred --CCccCCCceeeceeEEEEcCCCCCCccce--eecCCCCCC--Cee-EE-EeecCCc--EEEcCCccccCC------cc
Q 026314 79 --DNVFIPPAYYARGCYFSLANTKVAPFKHL--IYPIPEDGG--LGV-HV-TLDLDGQ--IKFGPDVEWIDG------ID 142 (240)
Q Consensus 79 --~~~~~p~~~~~~g~~~~~~~~~~~~~~~~--i~~~p~~~~--~~~-~~-~~~~~g~--~~~G~~~~~~~~------~~ 142 (240)
.++++| ++|+|++++++. ...++. ||+++++.. ..+ |+ ++..+|+ ++|||++.+... ..
T Consensus 258 ~~~~~i~P----vrGq~l~~~~~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~ 332 (494)
T PRK05257 258 AKGYGGFP----VSGQFLVCENPE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLL 332 (494)
T ss_pred cCCCCeee----eeEEEEEcCCHH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHH
Confidence 356778 999999997641 112344 899877332 222 33 5556775 999999865322 12
Q ss_pred cccccc-------------ccc---ccccch--hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEe
Q 026314 143 DTLSFL-------------NRF---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQ 203 (240)
Q Consensus 143 ~~~~~~-------------~~~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~ 203 (240)
|++... +.+ .+...+ .....+++.+++|+|.+..+++....+|+|+++.+. ....+.++.|
T Consensus 333 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~ 412 (494)
T PRK05257 333 DLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFG 412 (494)
T ss_pred HHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECC
Confidence 222100 111 111111 125567888999999999999999999999999863 1111344444
Q ss_pred cCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314 204 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238 (240)
Q Consensus 204 ~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i 238 (240)
..-....++.+++....|||+|+|..+|+.+++.+
T Consensus 413 ~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~ 447 (494)
T PRK05257 413 TEVVSSADGSIAALLGASPGASTAVPIMLEVLEKC 447 (494)
T ss_pred cEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHh
Confidence 21111346888887789999999999999999864
No 28
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.79 E-value=5.1e-18 Score=144.47 Aligned_cols=203 Identities=16% Similarity=0.150 Sum_probs=129.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL 78 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~ 78 (240)
+|...|+++|+.|+.+.+|+.+...+ ..+.|.|.+|. .++|+.+|.++|+|.+.|++...++
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---------------~Y~akkiI~t~GaWi~klL~~~~~~ 222 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---------------IYHAKKIIFTVGAWINKLLPTSLAI 222 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---------------eeecceEEEEecHHHHhhcCccccc
Confidence 56788999999999999999987543 35678888882 5999999999999999999863355
Q ss_pred CCccCCCceeec--eeEEEEcCCCCCCccceeecCCCCCCCeeEEEee-cCCc-EEEcCCccccCC--------cccccc
Q 026314 79 DNVFIPPAYYAR--GCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD-LDGQ-IKFGPDVEWIDG--------IDDTLS 146 (240)
Q Consensus 79 ~~~~~p~~~~~~--g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~g~-~~~G~~~~~~~~--------~~~~~~ 146 (240)
.+++.| .+ -+||....+ ..+| ... ....+..|. .++. ++.|........ -.+..+
T Consensus 223 ~~Pv~~----i~ltvcywk~~~~------~~~~-l~~--d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~ 289 (399)
T KOG2820|consen 223 GFPVAP----IQLTVCYWKTKKN------MPVY-LFD--DDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVP 289 (399)
T ss_pred CCccce----eEeehhhheeecC------Ccee-ecC--CCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCC
Confidence 666555 32 122322211 1111 000 011122221 1221 233321100000 000000
Q ss_pred c-ccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCEEEEeCCCCchH
Q 026314 147 F-LNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGL 224 (240)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~ 224 (240)
. +...........++-..+..++|.|++.+.... +-..|.+ +|||.+|+||.++ .+.|+++..|++||||
T Consensus 290 ~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~p~------~t~~C~YT~TpD~~FviD~~P--~~~Nv~Vg~G~SGHGF 361 (399)
T KOG2820|consen 290 IDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRSPI------NTKMCMYTDTPDANFVIDKHP--QYDNVFVGGGGSGHGF 361 (399)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHhCccccCCCcc------eeeEEEeeCCCCcCeeeecCC--CcccEEEecCCCCcce
Confidence 0 001112223345666677778888999866553 4567778 8999999999999 7889999999999999
Q ss_pred hhhHHHHHHHHHHHhC
Q 026314 225 TSSMAIAEYVAAKFLR 240 (240)
Q Consensus 225 t~ap~~g~~va~~i~~ 240 (240)
+++|++|+.+|+++++
T Consensus 362 K~aP~iGk~lae~~~~ 377 (399)
T KOG2820|consen 362 KFAPNIGKYLAEMAMG 377 (399)
T ss_pred eecchHHHHHHHHhhh
Confidence 9999999999999864
No 29
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.78 E-value=4.1e-18 Score=152.43 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=152.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc-CC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GL 78 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~-~~ 78 (240)
+++-.|.++||.+.++.+|.++.+++++ + .+...|.. +|++++|+|+.||||+|+.++.|.+|-. ..
T Consensus 229 ~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~i----------TG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~ 298 (680)
T KOG0042|consen 229 AVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHI----------TGKEYEIRAKVVVNATGPFSDSIRKMDDEDA 298 (680)
T ss_pred HHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEee----------cCcEEEEEEEEEEeCCCCccHHHHhhccccc
Confidence 4566789999999999999998887653 3 23333332 3678999999999999999999999972 22
Q ss_pred CCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314 79 DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN 158 (240)
Q Consensus 79 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
+..++| .-|.+++++.-+.+.-..++- |...+..+.|+..+.|..++|.+....+. ..+..++++
T Consensus 299 ~~i~~p----SsGvHIVlP~yY~P~~mGlld--P~TsDgRViFflPWqg~TIaGTTD~pt~v---------~~~P~PtE~ 363 (680)
T KOG0042|consen 299 KPICVP----SSGVHIVLPGYYCPENMGLLD--PKTSDGRVIFFLPWQGKTIAGTTDIPTSV---------THSPTPTED 363 (680)
T ss_pred Cceecc----CCceeEEcccccCCccccccc--CCCCCCcEEEEeccCCceeeccCCCCCCC---------CCCCCCCHH
Confidence 344456 899999987543222122222 22222335555557899999998765332 456778899
Q ss_pred hHHHHHHHHhhhC---CCCCCCCccccccccCCeecCC-CC-----CCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHH
Q 026314 159 RAERFYPEIRKYY---PDLRDGSLQPSYAGIRPKLSGP-RQ-----SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMA 229 (240)
Q Consensus 159 ~~~~~~~~~~~~~---P~l~~~~i~~~~aG~r~~~~~~-~~-----~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~ 229 (240)
+++.+++.++.|+ +++...+|...|+|+||++.+| .. ..++++|..++ .|++.++|.. +|+...
T Consensus 364 dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaGGK---WTTyR~ 436 (680)
T KOG0042|consen 364 DIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAGGK---WTTYRH 436 (680)
T ss_pred HHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEecCc---chhHHH
Confidence 9999999999998 3578899999999999999887 21 13556666644 6999999877 999999
Q ss_pred HHHHHHHHHh
Q 026314 230 IAEYVAAKFL 239 (240)
Q Consensus 230 ~g~~va~~i~ 239 (240)
+||...+.+.
T Consensus 437 MAEeTVd~aI 446 (680)
T KOG0042|consen 437 MAEETVDAAI 446 (680)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 30
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.64 E-value=1.8e-15 Score=126.91 Aligned_cols=149 Identities=19% Similarity=0.257 Sum_probs=113.0
Q ss_pred ecCEEEEcCCCChHHHHHHhcCCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCc
Q 026314 56 IPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDV 135 (240)
Q Consensus 56 ~a~~VV~aaG~wa~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~ 135 (240)
++|.||||||.|+..|+. ..+ +.| .||+.+.++. +++.+.+|. +. ...++.|. .+++.+|++.
T Consensus 183 ~~DVivNCtGL~a~~L~g---Dd~--~yP----iRGqVl~V~A---pWvkhf~~~--D~--~~ty~iP~-~~~V~lGg~~ 245 (342)
T KOG3923|consen 183 EYDVIVNCTGLGAGKLAG---DDD--LYP----IRGQVLKVDA---PWVKHFIYR--DF--SRTYIIPG-TESVTLGGTK 245 (342)
T ss_pred CCcEEEECCccccccccC---Ccc--eee----ccceEEEeeC---CceeEEEEe--cC--CccEEecC-CceEEEcccc
Confidence 389999999999988765 212 567 9999999987 456676665 21 11356664 6789999987
Q ss_pred cccCCcccccccccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCC--C-CCCCC
Q 026314 136 EWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDD--T-HGVPG 212 (240)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~--~-~~~~~ 212 (240)
+.. .++..++.++...+++...++.|.|...++++.|+|+||.-.. -.+.... . ....-
T Consensus 246 Q~g-----------~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~-------vRlE~e~~~~~~k~~~ 307 (342)
T KOG3923|consen 246 QEG-----------NWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQ-------VRLEAELRTRGGKRLT 307 (342)
T ss_pred ccC-----------cccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCc-------eeeeeeeecCCCccce
Confidence 654 6788889999999999999999999999999999999997321 1121111 0 01233
Q ss_pred EEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314 213 LVNLFGIESPGLTSSMAIAEYVAAKFL 239 (240)
Q Consensus 213 ~~~~~G~~~~G~t~ap~~g~~va~~i~ 239 (240)
+++..|++|.|||++.++|-.++.+++
T Consensus 308 VVHnYGHgG~G~Tl~wGtAlea~~Lv~ 334 (342)
T KOG3923|consen 308 VVHNYGHGGNGFTLGWGTALEAAKLVL 334 (342)
T ss_pred eEeeccCCCCceecccchHHHHHHHHH
Confidence 589999999999999999998888764
No 31
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.52 E-value=3.4e-13 Score=120.23 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=145.5
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc---
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI--- 76 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~--- 76 (240)
.|.+.++++ |++++++++|++|++.+++ |.|++.+-. ++...+++|++|+++||++|-.|++..|
T Consensus 186 ~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~----------~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e 255 (488)
T PF06039_consen 186 QLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLK----------TGEKREVRAKFVFVGAGGGALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecC----------CCCeEEEECCEEEECCchHhHHHHHHcCChh
Confidence 356677777 9999999999999998765 998774321 2345589999999999999999999884
Q ss_pred CCCCccCCCceeeceeEEEEcCCCC-CCccceeecCCCCC---CCeeEEE-eecCC--cEEEcCCccccCC------ccc
Q 026314 77 GLDNVFIPPAYYARGCYFSLANTKV-APFKHLIYPIPEDG---GLGVHVT-LDLDG--QIKFGPDVEWIDG------IDD 143 (240)
Q Consensus 77 ~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~---~~~~~~~-~~~~g--~~~~G~~~~~~~~------~~~ 143 (240)
+..+...| +.|++++.+++.- ...+.-+|...... ..-.|+- +-.+| .++|||++.+... ..|
T Consensus 256 ~~gyggfP----VsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~D 331 (488)
T PF06039_consen 256 GKGYGGFP----VSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLD 331 (488)
T ss_pred hcccCCCc----ccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHH
Confidence 35677889 9999999876420 01133455543211 0001221 12344 4889999875422 123
Q ss_pred ccccc-------------cccc---cccc--hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEec
Q 026314 144 TLSFL-------------NRFD---YSVN--ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQG 204 (240)
Q Consensus 144 ~~~~~-------------~~~~---~~~~--~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~ 204 (240)
++... ++.+ |-+. ....+..++.+++|+|.+..++|....+|.|+++.++ ....+...+|.
T Consensus 332 l~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGT 411 (488)
T PF06039_consen 332 LFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQSKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGT 411 (488)
T ss_pred HHhhcCcccHHHHHHHHhhhhhHHHHHHHhhccCHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCc
Confidence 22110 0111 0000 1345667888999999999999999999999999875 22234455666
Q ss_pred CCCCCCCCEEEE-eCCCCchHhhhHHHHHHHHH
Q 026314 205 DDTHGVPGLVNL-FGIESPGLTSSMAIAEYVAA 236 (240)
Q Consensus 205 ~~~~~~~~~~~~-~G~~~~G~t~ap~~g~~va~ 236 (240)
......+|.+.+ .| .|||.++|..++-.+.+
T Consensus 412 evI~s~dGsiaaLLG-ASPGASTav~iMl~vl~ 443 (488)
T PF06039_consen 412 EVITSADGSIAALLG-ASPGASTAVSIMLDVLE 443 (488)
T ss_pred eEEecCCCceEeecc-CCCChhhhHHHHHHHHH
Confidence 554456786654 66 67999999877766554
No 32
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.31 E-value=4.8e-11 Score=100.27 Aligned_cols=202 Identities=17% Similarity=0.025 Sum_probs=128.2
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD 79 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~ 79 (240)
.+..+|++.| +++.. -.|.++..+..++. |-..+. .+......++++|+++|+|+.+|.... +
T Consensus 152 ~i~sea~k~~~V~lv~-Gkv~ev~dEk~r~n~v~~ae~-----------~~ti~~~d~~~ivvsaGPWTskllp~~---r 216 (380)
T KOG2852|consen 152 FILSEAEKRGGVKLVF-GKVKEVSDEKHRINSVPKAEA-----------EDTIIKADVHKIVVSAGPWTSKLLPFT---R 216 (380)
T ss_pred HHHHHHHhhcCeEEEE-eeeEEeecccccccccchhhh-----------cCceEEeeeeEEEEecCCCchhhcccc---c
Confidence 5678888886 78886 56777764445543 322211 022336788999999999999988755 2
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccc-eeecCCCCC----CCeeEEEeecCC-cEEEcCCccccCCccccccccccccc
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKH-LIYPIPEDG----GLGVHVTLDLDG-QIKFGPDVEWIDGIDDTLSFLNRFDY 153 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~----~~~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~~~~ 153 (240)
+. - .|-..+++++..+. ++. .++-....+ ....-+.++.++ ..++|.+..+..-|+| ..+.
T Consensus 217 Is--g----lrihsI~l~~~e~~-v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPed------sd~v 283 (380)
T KOG2852|consen 217 IS--G----LRIHSITLSPGEKP-VGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPED------SDDV 283 (380)
T ss_pred cc--e----eeeeeEEecCCCCC-CCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcc------cccc
Confidence 11 1 55566667664322 222 222211111 111112222343 4556665433211221 4456
Q ss_pred ccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHH
Q 026314 154 SVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEY 233 (240)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~ 233 (240)
.++++.+..+.+.+..+.+.|....+...-+=+.|.. +-.+.++||..+ .++|+++||+=.|++.+|++|+.
T Consensus 284 ~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~s----n~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~ 355 (380)
T KOG2852|consen 284 FVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTS----NITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKC 355 (380)
T ss_pred eeCHHHHHHHHHHHHHhhhhhccchhhhhhhcccccc----CCCCCceEeecC----CceEEeecccccceecCcchhHH
Confidence 6788899999999999889998888765555555553 224678999876 39999999999999999999999
Q ss_pred HHHHHh
Q 026314 234 VAAKFL 239 (240)
Q Consensus 234 va~~i~ 239 (240)
|||+|+
T Consensus 356 mAElll 361 (380)
T KOG2852|consen 356 MAELLL 361 (380)
T ss_pred HHHHHh
Confidence 999986
No 33
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.69 E-value=3.1e-06 Score=72.09 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=107.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
.|.+.+++.|++++.+++|+++...++++++....+ ..+++||.||.|.|.++. +.+++ +...
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~a~~vv~a~G~~s~-~~~~~-~~~~- 158 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGG--------------EGTVTAKIVIGADGSRSI-VAKKL-GLRK- 158 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCc--------------cEEEEeCEEEECCCcchH-HHHhc-CCCC-
Confidence 467888899999999999999988888776554332 127999999999999874 77766 3332
Q ss_pred cCCCceeeceeEEEEcCCCC-CCccc--eeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314 82 FIPPAYYARGCYFSLANTKV-APFKH--LIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN 158 (240)
Q Consensus 82 ~~p~~~~~~g~~~~~~~~~~-~~~~~--~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
.+ .....+....+..+.. ...+. ..+..........++.|..++++.+|..... .. ...
T Consensus 159 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~------------~~----~~~ 220 (295)
T TIGR02032 159 -EP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRS------------AE----EGE 220 (295)
T ss_pred -CC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeecc------------CC----CCC
Confidence 11 0112222222322110 01111 1111100011224667776676777643211 10 123
Q ss_pred hHHHHHHHHhhhCCCCCCCCccccccccCCeecCC--CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314 159 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 236 (240)
Q Consensus 159 ~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~ 236 (240)
+.+..++...+.+|.+....+.+.+.+..|..... ...++-++||..- +.+.. +.|.|+.+|---|.++|+
T Consensus 221 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA-----~~~~P--~~g~G~~~a~~~a~~aa~ 293 (295)
T TIGR02032 221 DLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAA-----GHVKP--LTGEGIYYAMRSGDVAAE 293 (295)
T ss_pred CHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEeccc-----CCCCC--ccCCcHHHHHHHHHHHHh
Confidence 34555555556678887777766666666653111 1112223445432 22222 456789999888888887
Q ss_pred HH
Q 026314 237 KF 238 (240)
Q Consensus 237 ~i 238 (240)
.|
T Consensus 294 ~~ 295 (295)
T TIGR02032 294 VI 295 (295)
T ss_pred hC
Confidence 53
No 34
>PLN02697 lycopene epsilon cyclase
Probab=98.45 E-value=1.2e-05 Score=74.98 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=103.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-cCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-IGLD 79 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~~~~ 79 (240)
.|.+.+.+.|+++ .+++|+++...++++. +.+.+|. +++|+.||.|.|.|+..+.... +...
T Consensus 197 ~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~---------------~i~A~lVI~AdG~~S~rl~~~~~~~~~ 260 (529)
T PLN02697 197 ELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGR---------------VIPCRLATVASGAASGRLLQYEVGGPR 260 (529)
T ss_pred HHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCc---------------EEECCEEEECCCcChhhhhccccCCCC
Confidence 4677788899998 5789999988777765 4455552 7999999999999996554421 1112
Q ss_pred CccCCCceeeceeEEEEcCCCCCCccceeec------C-----CCC-CCCeeEEEeecCCcEEE-cCCccccCCcccccc
Q 026314 80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYP------I-----PED-GGLGVHVTLDLDGQIKF-GPDVEWIDGIDDTLS 146 (240)
Q Consensus 80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~------~-----p~~-~~~~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~ 146 (240)
.. .....|..+.++..... .+..++. . ... ....+|+.|..++++++ +.. ....
T Consensus 261 ~~----~Q~a~Gi~ve~~~~~~d-~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~--l~~~------ 327 (529)
T PLN02697 261 VC----VQTAYGVEVEVENNPYD-PSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC--LASK------ 327 (529)
T ss_pred cc----cEEEEEEEEEecCCCCC-cchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee--eccC------
Confidence 22 33378888887642111 1111110 0 000 01124667776667777 331 1000
Q ss_pred cccccccccchh-hHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCEEEEeCCCCchH
Q 026314 147 FLNRFDYSVNAN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGL 224 (240)
Q Consensus 147 ~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~ 224 (240)
...+.+ -.+++.+++.+. .+....+.+.=.|+.|+..+. ..+.+-..+|. ..++++-+ .|.|+
T Consensus 328 ------~~l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~-----AAG~vhPs--TGy~v 392 (529)
T PLN02697 328 ------DAMPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGA-----AASMVHPA--TGYSV 392 (529)
T ss_pred ------CCCCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCCCcccCCCeeEeeh-----hhcCCCCc--hhhhH
Confidence 001112 233444444442 455566666666777873221 22222333443 23555432 44556
Q ss_pred ----hhhHHHHHHHHHHH
Q 026314 225 ----TSSMAIAEYVAAKF 238 (240)
Q Consensus 225 ----t~ap~~g~~va~~i 238 (240)
..||..|+.+++.+
T Consensus 393 ~~~l~~A~~~A~~ia~~l 410 (529)
T PLN02697 393 VRSLSEAPKYASVIARIL 410 (529)
T ss_pred HHHHHhHHHHHHHHHHHh
Confidence 55566666666554
No 35
>PRK06185 hypothetical protein; Provisional
Probab=98.41 E-value=2.8e-05 Score=69.86 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=78.1
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG 77 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~ 77 (240)
.|.+.+++. |++++++++|++++..++++. |++ ++| +.+++||.||.|.|.|+. +.+++ +
T Consensus 113 ~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g--------------~~~i~a~~vI~AdG~~S~-vr~~~-g 176 (407)
T PRK06185 113 FLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDG--------------PGEIRADLVVGADGRHSR-VRALA-G 176 (407)
T ss_pred HHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCC--------------cEEEEeCEEEECCCCchH-HHHHc-C
Confidence 345566654 899999999999998887653 443 333 136999999999999985 77777 4
Q ss_pred CCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314 78 LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA 157 (240)
Q Consensus 78 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (240)
.+....+ .++..+.+..+.........+....+ ...+.+.|.. +.+.++..... ........
T Consensus 177 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~llP~~-~~~~i~~~~~~------------~~~~~~~~ 238 (407)
T PRK06185 177 LEVREFG----APMDVLWFRLPREPDDPESLMGRFGP-GQGLIMIDRG-DYWQCGYVIPK------------GGYAALRA 238 (407)
T ss_pred CCccccC----CCceeEEEecCCCCCCCcccceEecC-CcEEEEEcCC-CeEEEEEEecC------------CCchhhhh
Confidence 4544344 45555544322111100001111111 1223455543 55555432211 11112234
Q ss_pred hhHHHHHHHHhhhCCCCC
Q 026314 158 NRAERFYPEIRKYYPDLR 175 (240)
Q Consensus 158 ~~~~~~~~~~~~~~P~l~ 175 (240)
...+.+.+.+.+.+|.+.
T Consensus 239 ~~~~~~~~~~~~~~p~~~ 256 (407)
T PRK06185 239 AGLEAFRERVAELAPELA 256 (407)
T ss_pred hhHHHHHHHHHHhCccHH
Confidence 456778888888888753
No 36
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.38 E-value=1.7e-05 Score=72.09 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=47.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|.+.|++.|++|+++++|++++.+++++. |.++++ +++|+.||.|.|.++ .|++.+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~----------------~i~A~~VI~A~G~~s-~l~~~l 170 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD----------------VIEAKTVILADGVNS-ILAEKL 170 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc----------------EEECCEEEEEeCCCH-HHHHHc
Confidence 578899999999999999999988777765 554333 799999999999975 677776
No 37
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.34 E-value=3.1e-05 Score=69.16 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=52.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
.|.+.+++.|++++ .++|+.+... ++.+.|++++|. +++|+.||.|.|.++ .+.....+...
T Consensus 90 ~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~---------------~~~a~~VI~A~G~~s-~~~~~~~~~~~ 152 (388)
T TIGR01790 90 ELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQ---------------RIQARLVIDARGFGP-LVQYVRFPLNV 152 (388)
T ss_pred HHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCC---------------EEEeCEEEECCCCch-hcccccCCCCc
Confidence 46677888899997 5689998877 556778887763 799999999999997 33221111122
Q ss_pred ccCCCceeeceeEEEEcC
Q 026314 81 VFIPPAYYARGCYFSLAN 98 (240)
Q Consensus 81 ~~~p~~~~~~g~~~~~~~ 98 (240)
. +....|..+.++.
T Consensus 153 ~----~q~~~G~~~~~~~ 166 (388)
T TIGR01790 153 G----FQVAYGVEARLSR 166 (388)
T ss_pred e----EEEEEEEEEEEcC
Confidence 2 2226777777753
No 38
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.23 E-value=5.7e-05 Score=67.62 Aligned_cols=58 Identities=10% Similarity=0.202 Sum_probs=50.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|.+++++.|++++++++|++++..++++.|++++|. +++||.||.|.|.|+ .+.+.+
T Consensus 118 ~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S-~vr~~~ 175 (392)
T PRK08773 118 RLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR---------------RLEAALAIAADGAAS-TLRELA 175 (392)
T ss_pred HHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hHHHhh
Confidence 4677788899999999999999988888888887663 799999999999999 688877
No 39
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.14 E-value=0.00014 Score=64.49 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=49.6
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+.+.| ++++.+++|++++..++++.|++++|. +++||.||.|.|.++. +.+.+
T Consensus 111 ~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vi~adG~~S~-vr~~l 169 (385)
T TIGR01988 111 ALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQ---------------QLRARLLVGADGANSK-VRQLA 169 (385)
T ss_pred HHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCC---------------EEEeeEEEEeCCCCCH-HHHHc
Confidence 4677888888 999999999999988888888887773 6999999999999884 66766
No 40
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.13 E-value=8.9e-06 Score=73.30 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=51.9
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~~ 75 (240)
+|.+.++++|++|+.+++|++++.++++++ |.|+++. ...++||+||+|+|.| +..|.+.+
T Consensus 268 aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 268 ALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc-------------cceEECCEEEEccCCCcCHHHHhhc
Confidence 688899999999999999999999888876 6765541 1279999999999999 99998876
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.11 E-value=0.00013 Score=65.09 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=50.7
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
+|.+.++++| ++++ +++|++++..++.+.|++++|. +++||.||.|.|.|+. +.+.+ +.+.
T Consensus 116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~adG~~S~-vr~~~-~~~~ 177 (388)
T PRK07608 116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ---------------VLRADLVVGADGAHSW-VRSQA-GIKA 177 (388)
T ss_pred HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC---------------EEEeeEEEEeCCCCch-HHHhc-CCCc
Confidence 4677888888 9999 8999999888888888887762 6999999999999986 77776 3343
Q ss_pred c
Q 026314 81 V 81 (240)
Q Consensus 81 ~ 81 (240)
.
T Consensus 178 ~ 178 (388)
T PRK07608 178 E 178 (388)
T ss_pred c
Confidence 3
No 42
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.09 E-value=0.00037 Score=62.27 Aligned_cols=188 Identities=15% Similarity=0.142 Sum_probs=107.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCcc
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVF 82 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~~ 82 (240)
+.+.+. .+..++.+++|++|+..++.+.|++++|. +++|+.||.|.|..+. . +.....
T Consensus 93 l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~a~~VvDa~g~~~~-~-----~~~~~~ 150 (374)
T PF05834_consen 93 LLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGR---------------TIRARVVVDARGPSSP-K-----ARPLGL 150 (374)
T ss_pred HHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCC---------------EEEeeEEEECCCcccc-c-----cccccc
Confidence 456666 44456678999999998887888888873 7999999999996544 1 112222
Q ss_pred CCCceeeceeEEEEcCCCCCCccce--eecCCCC-CC-CeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314 83 IPPAYYARGCYFSLANTKVAPFKHL--IYPIPED-GG-LGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN 158 (240)
Q Consensus 83 ~p~~~~~~g~~~~~~~~~~~~~~~~--i~~~p~~-~~-~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (240)
+. ..|..+.++.+...+-... -|.++.. .. ..+|+.|...++.++..|. +.. ....+.+
T Consensus 151 Q~----f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~-fs~------------~~~~~~~ 213 (374)
T PF05834_consen 151 QH----FYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETS-FSP------------RPALPEE 213 (374)
T ss_pred ce----eEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEE-EcC------------CCCCCHH
Confidence 23 6777777654311111111 1223332 22 2356778777888887553 211 1112222
Q ss_pred hH-HHHHHHHhhhCCCCCCCCccccccccCCeecCC---CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314 159 RA-ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP---RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234 (240)
Q Consensus 159 ~~-~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v 234 (240)
.. +++.+++.+ -.+...+|.+.-.|+.|++..+ ....+-..||.. .|.+..+ .|.+|..+...++.+
T Consensus 214 ~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~a-----gG~v~Ps--TGYs~~~~~~~a~~i 284 (374)
T PF05834_consen 214 ELKARLRRYLER--LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTA-----GGMVKPS--TGYSFARIQRQADAI 284 (374)
T ss_pred HHHHHHHHHHHH--cCCCceeEEEeecceeecccCCCccccCCCeeeEEcc-----ccCCCCc--ccHHHHHHHHHHHHH
Confidence 33 344455544 4677778888889999994322 112222234532 3555432 345577766667777
Q ss_pred HHHH
Q 026314 235 AAKF 238 (240)
Q Consensus 235 a~~i 238 (240)
|+.+
T Consensus 285 a~~l 288 (374)
T PF05834_consen 285 ADAL 288 (374)
T ss_pred HHHH
Confidence 6654
No 43
>PRK10015 oxidoreductase; Provisional
Probab=98.06 E-value=0.00024 Score=64.65 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=46.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|.+.|++.|++++.+++|+++..+++++. |.+.+. +++|+.||.|.|.++ .+++.+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~----------------~i~A~~VI~AdG~~s-~v~~~l 170 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD----------------ILEANVVILADGVNS-MLGRSL 170 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe----------------EEECCEEEEccCcch-hhhccc
Confidence 578889999999999999999988777775 555433 799999999999865 466666
No 44
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.05 E-value=0.00027 Score=62.81 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=48.9
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+.+ .|++++.+++|++++..+++++|++++|. +++||.||.|.|.|+. +.+++
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~AdG~~S~-vr~~l 168 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQ---------------QLRAKLLIAADGANSK-VRELL 168 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCChH-HHHHc
Confidence 46677777 49999999999999988888888887662 6999999999999975 77777
No 45
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.98 E-value=0.00037 Score=62.25 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=47.1
Q ss_pred hhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+.+ .|++++++++|+++...+++|.|+++++. +++||.||.|.|.|+. +.+.+
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr~~~ 175 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGE---------------TLTGRLLVAADGSHSA-LREAL 175 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCChh-hHHhh
Confidence 4555555 48999999999999888888888887762 6999999999999985 77777
No 46
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.97 E-value=0.00093 Score=60.15 Aligned_cols=59 Identities=25% Similarity=0.416 Sum_probs=48.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|++.|++.|++++..+.|+.+...++++.+.+..+. .+++|+.||.|.|. ...+++.+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--------------~e~~a~~vI~AdG~-~s~l~~~l 158 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--------------DEVRAKVVIDADGV-NSALARKL 158 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--------------EEEEcCEEEECCCc-chHHHHHh
Confidence 6899999999999999999999999887764443331 28999999999998 55677777
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.97 E-value=0.0012 Score=59.24 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=47.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.|.+.|++++. +.|+++...++++.|++.++.. .+.+++.+++||.||.|.|.++ .+.+.+
T Consensus 97 ~L~~~a~~~G~~v~~-~~v~~v~~~~~~~~v~~~~~~~-------~~~~~~~~i~a~~VI~AdG~~S-~v~r~l 161 (388)
T TIGR02023 97 YLRERAQKAGAELIH-GLFLKLERDRDGVTLTYRTPKK-------GAGGEKGSVEADVVIGADGANS-PVAKEL 161 (388)
T ss_pred HHHHHHHhCCCEEEe-eEEEEEEEcCCeEEEEEEeccc-------cCCCcceEEEeCEEEECCCCCc-HHHHHc
Confidence 477888899999986 4699998888888776543200 0012334799999999999987 466766
No 48
>PLN02463 lycopene beta cyclase
Probab=97.95 E-value=0.00046 Score=63.15 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=43.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|.+.+.+.|++++ .++|++|+..++++.|++++|. +++||.||.|.|..+.
T Consensus 119 ~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~---------------~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 119 KMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGV---------------KIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECcCCCcC
Confidence 35667778899997 5899999988888889888773 7999999999998764
No 49
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.93 E-value=0.00055 Score=61.16 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=48.6
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++. |++++++++|++++..++++.|+++++. +++||.||.|.|.|+. +.+.+
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vR~~~ 175 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE---------------EIQAKLVIGADGANSQ-VRQMA 175 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC---------------EEEeCEEEEeCCCCch-hHHHc
Confidence 355666666 9999999999999888888888887663 7999999999999995 77776
No 50
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.86 E-value=0.00037 Score=62.41 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=50.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++++.+++|++++..++.+.|++++|. +++||.||.|.|.++. +.+.+
T Consensus 116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~AdG~~S~-vr~~~ 173 (403)
T PRK07333 116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS---------------VLEARLLVAADGARSK-LRELA 173 (403)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEEcCCCChH-HHHHc
Confidence 4677888899999999999999988888888887763 7999999999999986 77777
No 51
>PRK07233 hypothetical protein; Provisional
Probab=97.72 E-value=0.0064 Score=54.79 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=43.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|++.++++|++|+++++|++|+..++++.+.+.++. +++||.||+|+.+ ..+.+++
T Consensus 203 ~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~---------------~~~ad~vI~a~p~--~~~~~ll 259 (434)
T PRK07233 203 ALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGE---------------EEDFDAVISTAPP--PILARLV 259 (434)
T ss_pred HHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCc---------------eEECCEEEECCCH--HHHHhhc
Confidence 4677788889999999999999988887764443442 7999999999986 3344443
No 52
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.70 E-value=8.9e-05 Score=59.89 Aligned_cols=51 Identities=25% Similarity=0.255 Sum_probs=40.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|...++++|.+++++++|+++++.+++|.|++.++. +++|++||+|+|.++
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~---------------~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGR---------------TIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------------EEEEEEEEE---SSC
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecc---------------eeeeeeEEEeeeccC
Confidence 556788899999999999999999999999998872 799999999999865
No 53
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.65 E-value=0.00079 Score=60.53 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=50.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|.+.+++.|++++++++|++++..+++|.|++++|. +++||.||.|.|.|+ .+.+.+
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vVgAdG~~S-~vR~~l 174 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR---------------QLRAPLVVAADGANS-AVRRLA 174 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hhHHhc
Confidence 4566777889999999999999988888888887763 799999999999999 677777
No 54
>PLN02612 phytoene desaturase
Probab=97.62 E-value=0.0069 Score=57.20 Aligned_cols=50 Identities=8% Similarity=0.118 Sum_probs=39.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+|++..+++|++|+++++|++|+..+++ + .|++.+|+ .++||+||.|+.+
T Consensus 313 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~---------------~~~ad~VI~a~p~ 364 (567)
T PLN02612 313 PIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGS---------------VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCc---------------EEECCEEEECCCH
Confidence 4566667789999999999999986554 3 36776663 6999999999865
No 55
>PRK08244 hypothetical protein; Provisional
Probab=97.62 E-value=0.0045 Score=57.25 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=47.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++++.+++|++++..+++++|+..+.. + +.+++||.||.|.|.+|. +.+.+
T Consensus 105 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-----------g-~~~i~a~~vVgADG~~S~-vR~~l 165 (493)
T PRK08244 105 VLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPD-----------G-LRTLTSSYVVGADGAGSI-VRKQA 165 (493)
T ss_pred HHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCC-----------c-cEEEEeCEEEECCCCChH-HHHhc
Confidence 3566778889999999999999988888776553210 0 237999999999999984 67766
No 56
>PRK06834 hypothetical protein; Provisional
Probab=97.58 E-value=0.00042 Score=64.16 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=51.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV 81 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~ 81 (240)
.|.+.+++.|++|+++++|++++..++++.|++.+|. +++||.||.|.|.+| .+.+++ +++.+
T Consensus 105 ~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~---------------~i~a~~vVgADG~~S-~vR~~l-gi~~~ 167 (488)
T PRK06834 105 ILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR---------------TLRAQYLVGCDGGRS-LVRKAA-GIDFP 167 (488)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCC-CcHhhc-CCCCC
Confidence 3567778889999999999999998888888876652 799999999999999 477777 44433
No 57
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.54 E-value=0.0059 Score=54.92 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=45.7
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+.+. |++++++++|++++..++++.|+..+++ .+.+++||.||-|-|.++ .+.+.+
T Consensus 127 L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~------------~~~~i~adlvIgADG~~S-~vR~~~ 187 (415)
T PRK07364 127 LQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEG------------KQQTLQSKLVVAADGARS-PIRQAA 187 (415)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCC------------cceEEeeeEEEEeCCCCc-hhHHHh
Confidence 45556565 7999999999999888888877765331 123699999999999988 566666
No 58
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.53 E-value=0.00026 Score=66.89 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=45.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChHHHHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPALAK 73 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~~l~~ 73 (240)
+|.+.|+++|++|+++++|+.+..+++++. |..... +.+..+.| +.||+|+|.|+..+..
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~------------~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETP------------GGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEEC------------CcEEEEEeCCEEEEcCCCcccCHHH
Confidence 577889999999999999999987777654 443221 11346889 9999999999975543
No 59
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.52 E-value=0.013 Score=54.09 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=40.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+|++.++++|++|+++++|++|..++++.+ |.+.++.. +...+++||.||.++.++
T Consensus 237 aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~----------~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 237 RLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRK----------QEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCC----------CceEEEECCEEEECCCHH
Confidence 577888889999999999999998877532 43333210 111268999999999874
No 60
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.50 E-value=0.00028 Score=65.35 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=45.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|++.++++|++|+++++|++|..+++++ .|++++|. +++||.||+|+|+|..
T Consensus 234 ~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~---------------~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 234 SLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE---------------KIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC---------------EEEcCEEEECCChHHH
Confidence 57899999999999999999998877655 48887773 6999999999999864
No 61
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.50 E-value=0.00081 Score=60.66 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=49.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL 71 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l 71 (240)
.|.+.+++.|++++++++|++++..++.+.|+++++ ++.||.||+|+|.++ ..+
T Consensus 110 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~----------------~i~ad~VIlAtG~~s~p~~gs~G~g~~l 173 (400)
T TIGR00275 110 ALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGG----------------EYEADKVILATGGLSYPQLGSTGDGYEI 173 (400)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc----------------EEEcCEEEECCCCcccCCCCCCcHHHHH
Confidence 467788889999999999999988777788887543 799999999999866 577
Q ss_pred HHHhc
Q 026314 72 AKRFI 76 (240)
Q Consensus 72 ~~~~~ 76 (240)
++++|
T Consensus 174 a~~lG 178 (400)
T TIGR00275 174 AESLG 178 (400)
T ss_pred HHHCC
Confidence 88773
No 62
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.49 E-value=0.0035 Score=55.89 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=46.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+.++|...+.+++|++++..++++.|+++++. +++||.||.|.|.++. +.+.+
T Consensus 116 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr~~~ 173 (388)
T PRK07494 116 ALEARVAELPNITRFGDEAESVRPREDEVTVTLADGT---------------TLSARLVVGADGRNSP-VREAA 173 (388)
T ss_pred HHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCC---------------EEEEeEEEEecCCCch-hHHhc
Confidence 4566777776444889999999988888988887663 7999999999999984 66766
No 63
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.42 E-value=0.0003 Score=63.66 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=41.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~ 70 (240)
+|.+.++++|++|+++++|++|+..+++ +.|+++++. ++.||.||+|+|.-| -.
T Consensus 114 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~---------------~~~a~~vILAtGG~S~p~~GS~G~gy~ 178 (409)
T PF03486_consen 114 ALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG---------------EYEADAVILATGGKSYPKTGSDGSGYR 178 (409)
T ss_dssp HHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE---------------EEEESEEEE----SSSGGGT-SSHHHH
T ss_pred HHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc---------------cccCCEEEEecCCCCccccCCCcHHHH
Confidence 4677889999999999999999998887 789994332 899999999999754 56
Q ss_pred HHHHh
Q 026314 71 LAKRF 75 (240)
Q Consensus 71 l~~~~ 75 (240)
+++.+
T Consensus 179 ~a~~l 183 (409)
T PF03486_consen 179 IAKKL 183 (409)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 77777
No 64
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.42 E-value=0.014 Score=52.29 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|++..+++|++|+++++|++|+..++++++.. .+|+ ++.||.||+|+-++.
T Consensus 203 l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~---------------~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 203 ARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGE---------------TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCc---------------cccCCEEEEcCCHHH
Confidence 45556678999999999999999888765432 2342 689999999987554
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.39 E-value=0.00051 Score=61.00 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=50.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL 71 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l 71 (240)
+|..++++.|++++++++|.+|++.+.+..|+|++|. +|+||.+|+|+|.-| -.+
T Consensus 116 ~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~---------------~i~~d~lilAtGG~S~P~lGstg~gy~i 180 (408)
T COG2081 116 ALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE---------------TVKCDSLILATGGKSWPKLGSTGFGYPI 180 (408)
T ss_pred HHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCC---------------EEEccEEEEecCCcCCCCCCCCchhhHH
Confidence 5778899999999999999999999888899999883 699999999999433 356
Q ss_pred HHHh
Q 026314 72 AKRF 75 (240)
Q Consensus 72 ~~~~ 75 (240)
++.+
T Consensus 181 A~~~ 184 (408)
T COG2081 181 ARQF 184 (408)
T ss_pred HHHc
Confidence 6766
No 66
>PRK09126 hypothetical protein; Provisional
Probab=97.39 E-value=0.0061 Score=54.39 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=44.8
Q ss_pred hHHH-HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 4 QGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 4 ~~~A-~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.+++ +..|++|+++++|++++..++.+.|++++|. +++||.||.|.|.++ .+.+.+
T Consensus 117 ~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S-~vr~~~ 173 (392)
T PRK09126 117 YEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGR---------------RLTARLLVAADSRFS-ATRRQL 173 (392)
T ss_pred HHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCC---------------EEEeCEEEEeCCCCc-hhhHhc
Confidence 3444 3469999999999999888888888877663 799999999999877 466666
No 67
>PRK11445 putative oxidoreductase; Provisional
Probab=97.35 E-value=0.068 Score=47.22 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=43.4
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+.+.|++++.++.|++++..+++|.|++ ++| +..+++||.||.|.|..| .+.+++
T Consensus 108 ~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g-------------~~~~i~a~~vV~AdG~~S-~vr~~l 163 (351)
T PRK11445 108 LIPASVEVYHNSLCRKIWREDDGYHVIFRADG-------------WEQHITARYLVGADGANS-MVRRHL 163 (351)
T ss_pred HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCC-------------cEEEEEeCEEEECCCCCc-HHhHHh
Confidence 4567999999999999998888888775 344 123699999999999977 466665
No 68
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.32 E-value=0.0013 Score=58.80 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=46.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL 71 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l 71 (240)
+|..+++++|++|+++++|++| +++++.|++..+. .+++||.||+|+|.-+ -.+
T Consensus 91 ~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~--------------~~~~a~~vIlAtGG~s~p~~Gs~g~gy~l 154 (376)
T TIGR03862 91 AWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQ--------------STIEADAVVLALGGASWSQLGSDGAWQQV 154 (376)
T ss_pred HHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCc--------------eEEecCEEEEcCCCccccccCCCcHHHHH
Confidence 5788999999999999999999 3445777775431 1699999999999854 467
Q ss_pred HHHhc
Q 026314 72 AKRFI 76 (240)
Q Consensus 72 ~~~~~ 76 (240)
++.+|
T Consensus 155 a~~lG 159 (376)
T TIGR03862 155 LDQRG 159 (376)
T ss_pred HHHCC
Confidence 88874
No 69
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.29 E-value=0.058 Score=50.62 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=45.5
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.++++ |++++++++|++++..++++.++....+ .+.+++||.||.|.|.++. +.+.+
T Consensus 131 L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~------------g~~~i~ad~vVgADG~~S~-vR~~l 191 (547)
T PRK08132 131 LVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPD------------GPYTLEADWVIACDGARSP-LREML 191 (547)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCC------------CcEEEEeCEEEECCCCCcH-HHHHc
Confidence 55666665 7999999999999988888775543221 1236999999999999986 77777
No 70
>PRK06847 hypothetical protein; Provisional
Probab=97.27 E-value=0.00082 Score=59.59 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=49.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++|+++++|++++..++++.|++.+|. +++||.||.|.|.|+..-..++
T Consensus 112 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vI~AdG~~s~~r~~l~ 170 (375)
T PRK06847 112 ILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGT---------------TGRYDLVVGADGLYSKVRSLVF 170 (375)
T ss_pred HHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCC---------------EEEcCEEEECcCCCcchhhHhc
Confidence 4667788889999999999999988888888887763 7999999999999986654443
No 71
>PRK06184 hypothetical protein; Provisional
Probab=97.24 E-value=0.0059 Score=56.63 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=47.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++|+.+++|++++..+++++++...... ..+++||.||.|.|.+|. +.+.+
T Consensus 114 ~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~------------~~~i~a~~vVgADG~~S~-vR~~l 174 (502)
T PRK06184 114 ILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG------------EETVRARYLVGADGGRSF-VRKAL 174 (502)
T ss_pred HHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC------------eEEEEeCEEEECCCCchH-HHHhC
Confidence 36677888899999999999999888887765521100 127999999999999984 67777
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.20 E-value=0.0013 Score=55.77 Aligned_cols=68 Identities=22% Similarity=0.137 Sum_probs=45.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 73 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~ 73 (240)
.|.+.|+++|++|+++++|+++..+++ ++. |.+....... ..+ ..+..+++|+.||+|+|.|+.-...
T Consensus 109 ~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~---~g~-~~~~~~i~Ak~VI~ATG~~a~v~~~ 178 (257)
T PRK04176 109 KLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM---AGL-HVDPLTIEAKAVVDATGHDAEVVSV 178 (257)
T ss_pred HHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccc---cCC-CCCcEEEEcCEEEEEeCCCcHHHHH
Confidence 478889999999999999999987655 443 4332110000 000 1134579999999999999975443
No 73
>PRK06126 hypothetical protein; Provisional
Probab=97.16 E-value=0.041 Score=51.58 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=47.1
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+++. |++|+++++|++++..+++++++..+.. .|++.+++||.||.|.|.++. +.+.+
T Consensus 132 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~----------~g~~~~i~ad~vVgADG~~S~-VR~~l 194 (545)
T PRK06126 132 LLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLD----------GGESLTIRADYLVGCDGARSA-VRRSL 194 (545)
T ss_pred HHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECC----------CCcEEEEEEEEEEecCCcchH-HHHhc
Confidence 45566654 8999999999999988887776553311 133457999999999999984 77777
No 74
>PRK07190 hypothetical protein; Provisional
Probab=97.14 E-value=0.0037 Score=57.88 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=49.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN 80 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~ 80 (240)
.|.+.++++|++++.+++|++++..++++.+++.+|+ +++|+.||.|.|.++ .+.+.+ +++.
T Consensus 114 ~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~---------------~v~a~~vVgADG~~S-~vR~~l-gi~f 175 (487)
T PRK07190 114 LLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGE---------------RIQSRYVIGADGSRS-FVRNHF-NVPF 175 (487)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCc---------------EEEeCEEEECCCCCH-HHHHHc-CCCc
Confidence 3566788899999999999999988888877766552 799999999999976 566666 4443
No 75
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.10 E-value=0.0022 Score=57.80 Aligned_cols=61 Identities=20% Similarity=0.096 Sum_probs=44.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 72 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~ 72 (240)
.|.+.++++|++|+++++|+++.++++++. |...+. ..++.+.|.|+.||+|+|.++..+.
T Consensus 146 ~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~----------~~g~~~~i~A~aVIlAtGG~~~~~~ 207 (417)
T PF00890_consen 146 ALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENP----------ADGEFVRIKAKAVILATGGFGGELL 207 (417)
T ss_dssp HHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEET----------TTCEEEEEEESEEEE----BGGHHH
T ss_pred HHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEEC----------CCCeEEEEeeeEEEeccCccccccc
Confidence 477889999999999999999999988775 554411 0134567999999999999997333
No 76
>PRK08013 oxidoreductase; Provisional
Probab=97.07 E-value=0.034 Score=50.01 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=47.5
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++. |++++++++|++++..++.+.|+..+|. +++||.||-|-|.+| .+.+.+
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~a~lvVgADG~~S-~vR~~~ 174 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS---------------MLTARLVVGADGANS-WLRNKA 174 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC---------------EEEeeEEEEeCCCCc-HHHHHc
Confidence 356667775 8999999999999888888888877663 799999999999987 566666
No 77
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.02 E-value=0.064 Score=48.05 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=47.6
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|.+++.+.+ ++++++++|+.++.+++.+.|+.+ +|. +++||.||-|=|.+| .+.+.+
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~---------------~~~a~llVgADG~~S-~vR~~~ 168 (387)
T COG0654 109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE---------------TLDADLLVGADGANS-AVRRAA 168 (387)
T ss_pred HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc---------------EEecCEEEECCCCch-HHHHhc
Confidence 5677788877 899999999999999988887776 662 799999999999876 445555
No 78
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.00 E-value=0.0022 Score=59.47 Aligned_cols=52 Identities=27% Similarity=0.262 Sum_probs=44.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|++.++++|++|+++++|++|..++++ +.|++++|. +++||.||+|+++..
T Consensus 224 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~---------------~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 224 AMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGE---------------RLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC---------------EEECCEEEECCcHHH
Confidence 5788899999999999999999988776 468887763 699999999999744
No 79
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.94 E-value=0.0033 Score=57.68 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=42.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.++++|++|+++++|+++..+++++. |.+.+. .+....++|+.||+|+|.+.
T Consensus 136 ~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~-----------~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 136 ALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSA-----------AGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEcc-----------CCceEEEECCEEEECCCCCC
Confidence 467788999999999999999988777664 555311 01234689999999999875
No 80
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.91 E-value=0.0025 Score=56.96 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=47.9
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+.+.| ++++++++|++++..++++.|++.+|. +++||.||.|.|.|+..-..+.
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~~r~~~~ 173 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGN---------------RWTGDALIGCDGVKSVVRQSLV 173 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCC---------------EEecCEEEECCCcChHHHhhcc
Confidence 4667777775 899999999999988788888887763 6999999999999987654444
No 81
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.90 E-value=0.11 Score=47.68 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=43.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.|++.|++++.. .|+++... ++.+.|++.+.. ..+..++..+++||.||-|-|.++ .+++.+
T Consensus 137 ~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~------~~~~~g~~~~v~a~~VIgADG~~S-~vrr~l 205 (450)
T PLN00093 137 FLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYD------SGSGAGTPKTLEVDAVIGADGANS-RVAKDI 205 (450)
T ss_pred HHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEecc------ccccCCCccEEEeCEEEEcCCcch-HHHHHh
Confidence 5778899999999865 58887643 244555543210 001112234799999999999966 677776
No 82
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.84 E-value=0.098 Score=47.14 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=42.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEE---eCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHL---EGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~---~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|++.|++.|++++..+ ++.++. .++.+.|+. .+. +...+++.+++|+.||.|.|..+ .+.+.+
T Consensus 98 ~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~--------~~~~g~~~~i~a~~VIgADG~~S-~v~~~~ 166 (398)
T TIGR02028 98 FLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDS--------GGPSGTRCTLEVDAVIGADGANS-RVAKEI 166 (398)
T ss_pred HHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccc--------cccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence 47788999999998775 777753 234455542 210 00012334799999999999977 677777
No 83
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.82 E-value=0.12 Score=47.45 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=37.4
Q ss_pred cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
++|+++++|+.|+..+++|.|++.+|. ++.||.||+|+- ...+.+++
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~a~p--~~~~~~ll 285 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHE---------------SIQADYVVLAAP--HDIAETLL 285 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEECCC--HHHHHhhc
Confidence 589999999999998888988887662 689999999984 34444444
No 84
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.72 E-value=0.0058 Score=55.62 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=41.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++|++|+++++|+++... ++.+. |.+.++ ...+.|+.||+|+|.++.
T Consensus 128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCccc
Confidence 5778899999999999999999876 34443 554322 127999999999997764
No 85
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.72 E-value=0.033 Score=52.21 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=46.2
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+.+. |++|+.+++|++++..+++++|+..+.+ |++.+++||.||.|-|.+|. +.+.+
T Consensus 119 L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~-----------G~~~~i~ad~vVgADG~~S~-vR~~l 180 (538)
T PRK06183 119 LRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDAD-----------GQRETVRARYVVGCDGANSF-VRRTL 180 (538)
T ss_pred HHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCC-----------CCEEEEEEEEEEecCCCchh-HHHHc
Confidence 44555554 9999999999999998888887765310 22347999999999999764 66666
No 86
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.71 E-value=0.0052 Score=58.16 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=43.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~ 69 (240)
+|.+.++++|++++++++|+++..+++++. |.+.++ +++..+.| +.||+|+|.+..
T Consensus 226 aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~------------g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 226 RLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQG------------GVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecC------------CeEEEEEccceEEECCCCccc
Confidence 477888999999999999999987677664 555333 22446886 689999999986
No 87
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.71 E-value=0.22 Score=45.38 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 8 ENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 8 ~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
++.+ ++|+++++|+.|...+++|+|++++|+ ++.||.||+|+-+.
T Consensus 233 ~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 233 KRLKLTKVYKGTKVTKLSHRGSNYTLELDNGV---------------TVETDSVVVTAPHK 278 (462)
T ss_pred HHhccCeEEcCCeEEEEEecCCcEEEEECCCc---------------EEEcCEEEECCCHH
Confidence 3344 789999999999998888999887763 79999999998753
No 88
>PLN02487 zeta-carotene desaturase
Probab=96.71 E-value=0.17 Score=47.94 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=39.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+++..+++|++|+++++|+.|+.++ ++ + .|++.++. ....+.||.||.|+++|.
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~------------~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT------------EKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC------------CceEEECCEEEECCCHHH
Confidence 5667789999999999999999873 22 3 35653111 112588999999999874
No 89
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.69 E-value=0.0077 Score=56.94 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=43.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChHHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAPAL 71 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~~l 71 (240)
|.+.++++|++|+++++|+.+..+++++. |.+.++. .+..+.++ .||+|+|.|+..+
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~------------~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAG------------GERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCC------------ceEEEEeCCEEEEcCCCccchH
Confidence 66778899999999999999998877664 5553321 12358885 7999999998443
No 90
>PRK07121 hypothetical protein; Validated
Probab=96.67 E-value=0.0057 Score=56.67 Aligned_cols=56 Identities=18% Similarity=0.038 Sum_probs=42.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~ 69 (240)
.|.+.++++|++|+++++|+++..++ +++. |...+. +++..+.| +.||+|+|.|+.
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~------------~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY------------GETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC------------CcEEEEEeCCEEEECCCCcCc
Confidence 46778899999999999999998764 4553 554332 22446899 999999998874
No 91
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.67 E-value=0.072 Score=47.58 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=93.3
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCccCCCceeec
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYAR 90 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~~~p~~~~~~ 90 (240)
+..++++++|+++ ..+++.+ .+|. +++|+.||.|.|..+..... ...+- ..
T Consensus 100 ~~~i~~~~~V~~v--~~~~v~l--~dg~---------------~~~A~~VI~A~G~~s~~~~~------~~~Q~----f~ 150 (370)
T TIGR01789 100 PEGVILGRKAVGL--DADGVDL--APGT---------------RINARSVIDCRGFKPSAHLK------GGFQV----FL 150 (370)
T ss_pred cccEEecCEEEEE--eCCEEEE--CCCC---------------EEEeeEEEECCCCCCCcccc------ceeeE----EE
Confidence 4447879999988 3455655 4452 79999999999987542221 11122 67
Q ss_pred eeEEEEcCCCCCCccce-e--ecCCCCCC-CeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH-HHHHH
Q 026314 91 GCYFSLANTKVAPFKHL-I--YPIPEDGG-LGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA-ERFYP 165 (240)
Q Consensus 91 g~~~~~~~~~~~~~~~~-i--~~~p~~~~-~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (240)
|..+.+..+ .. .+.. + +.++...+ ..+|+.|-.++++++..+. +.+ ...++.+.+ +++.+
T Consensus 151 G~~~r~~~p-~~-~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~-~s~------------~~~l~~~~l~~~l~~ 215 (370)
T TIGR01789 151 GREMRLQEP-HG-LENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTY-YAD------------DPLLDRNALSQRIDQ 215 (370)
T ss_pred EEEEEEcCC-CC-CCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEe-ccC------------CCCCCHHHHHHHHHH
Confidence 888887644 21 2221 1 22222122 2245577767778874321 111 011222332 34445
Q ss_pred HHhhhCCCCCCCCccccccccCCeecCC--C---CCCCCeE-EecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314 166 EIRKYYPDLRDGSLQPSYAGIRPKLSGP--R---QSPIDFV-IQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238 (240)
Q Consensus 166 ~~~~~~P~l~~~~i~~~~aG~r~~~~~~--~---~~~~~~i-i~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i 238 (240)
++.+. .+...++.+.-.|+.|++.+. . ...+..+ ||.. .+.++- ..|.||..+-..++.+++.+
T Consensus 216 ~~~~~--g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~A-----Ag~~~P--~tGyg~~~a~~~a~~la~~~ 285 (370)
T TIGR01789 216 YARAN--GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLR-----AGLTHP--TTGYSLPVAVENADALAAQP 285 (370)
T ss_pred HHHHh--CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecc-----cccccc--cccccHHHHHHHHHHHHhcc
Confidence 54443 556566666666888885420 0 1111122 3432 244443 24567888888888887654
No 92
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.62 E-value=0.0066 Score=56.50 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=42.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++|++|+++++|+.+...++++. |.. .++ +..++.|+.||+|+|.|+.
T Consensus 195 ~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g-------------~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 195 GLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGK-------------ETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCC-------------eEEEEecCeEEEeCCCccc
Confidence 467788899999999999999987767653 433 322 2347999999999998764
No 93
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.61 E-value=0.006 Score=57.09 Aligned_cols=62 Identities=24% Similarity=0.165 Sum_probs=45.2
Q ss_pred hhHHHH-HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHHh
Q 026314 3 VQGEAE-NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF 75 (240)
Q Consensus 3 l~~~A~-~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~~ 75 (240)
+...|+ +.|++|++++.|+.|..++++++ |+..++. +....+.++.||+|||+ ++.+|+.+.
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~-----------~~~~~~~ak~VIlaAGai~SP~LLl~S 263 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGG-----------RKEHTEANKEVILSAGAINSPQLLQLS 263 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCC-----------cEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence 455565 44799999999999998877654 6553331 11223689999999999 888888765
No 94
>PRK07588 hypothetical protein; Provisional
Probab=96.61 E-value=0.006 Score=54.55 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=41.4
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
...|++++++++|++++..++++.|++++|+ +++||.||.|.|.+|.-
T Consensus 113 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 113 IDGQVETIFDDSIATIDEHRDGVRVTFERGT---------------PRDFDLVIGADGLHSHV 160 (391)
T ss_pred hhcCeEEEeCCEEeEEEECCCeEEEEECCCC---------------EEEeCEEEECCCCCccc
Confidence 3458999999999999988888988888773 68999999999998844
No 95
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.53 E-value=0.0064 Score=53.90 Aligned_cols=50 Identities=22% Similarity=0.166 Sum_probs=41.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
...+...|.+|+++++|+.|+.++++++|.+.+|. +++||.||+|+....
T Consensus 216 ~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 216 ALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGE---------------TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSS---------------EEEESEEEE-S-HHH
T ss_pred HHHHhhcCceeecCCcceeccccccccccccccce---------------EEecceeeecCchhh
Confidence 44555568899999999999999999999998883 799999999998644
No 96
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.53 E-value=0.0075 Score=54.89 Aligned_cols=55 Identities=16% Similarity=0.001 Sum_probs=41.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|.+.++++|++|+++++|+++...+ +++. |. +.++ +...+.++.||+|+|.|+.
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-------------GIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-------------eEEEEecceEEEecCCCCC
Confidence 46778899999999999999998754 4442 33 3333 2235789999999999986
No 97
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.47 E-value=0.0094 Score=54.85 Aligned_cols=55 Identities=18% Similarity=-0.009 Sum_probs=43.1
Q ss_pred hhHHHHHCCcE--EEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTT--FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~--i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|...|+..|.+ |+++++|+++++.+++|.|++.++. +.+.+..+|.||+|+|.++
T Consensus 117 L~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----------~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 117 LQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----------GFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----------CceEEEEcCEEEEeccCCC
Confidence 45667788987 9999999999998889998876441 1123567999999999865
No 98
>PRK07045 putative monooxygenase; Reviewed
Probab=96.44 E-value=0.45 Score=42.39 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=41.4
Q ss_pred hhHHHH-HCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314 3 VQGEAE-NHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 73 (240)
Q Consensus 3 l~~~A~-~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~ 73 (240)
|.+.+. ..|++++++++|++++..+++ +.|++++|. +++||.||-|-|.+| .+.+
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---------------~~~~~~vIgADG~~S-~vR~ 169 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE---------------RVAPTVLVGADGARS-MIRD 169 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC---------------EEECCEEEECCCCCh-HHHH
Confidence 444544 458999999999999886654 357777663 799999999999877 3444
No 99
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.42 E-value=0.016 Score=51.60 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=47.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
+.+..+++|++++++++|+++...++.+.|++++|. +++||.||+|+|...+ .+++.+
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGR---------------SIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCc---------------EEECCEEEECcCCCcchHHHHHC
Confidence 445667889999999999999877777778877763 7999999999999875 466655
No 100
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.42 E-value=0.011 Score=55.83 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=43.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~ 69 (240)
.|.+.+++.|++|+++++|+.+..+++++. |..... +++..|.|+ .||+|+|.++.
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~------------g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRD------------GREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEEC------------CeEEEEEecceEEEecCCccC
Confidence 356788999999999999999998777664 544322 234578995 69999999886
No 101
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.41 E-value=0.014 Score=52.88 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=49.6
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+.+..+.+|.+|+++|+|.+|+..++.+ .|.+++|. +|.||+||+|-|-.+....+++
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~---------------~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGE---------------EIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCc---------------EEecCEEEEccCcchHHHHHHH
Confidence 4566788999999999999999988854 48888884 8999999999999888887766
No 102
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.39 E-value=0.013 Score=50.00 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=42.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+.+++.|+++++ ++|++++..++.+.|+++++. ++++|.||+|+|.+.
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~---------------~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGK---------------EYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence 45567888999998 999999988788888887652 799999999999864
No 103
>PRK12839 hypothetical protein; Provisional
Probab=96.36 E-value=0.011 Score=55.97 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=41.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCChHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~wa~~ 70 (240)
.|++.|+++|++|+++++|+++... ++++. |...+.+ + +..+ .++.||+|+|.|+..
T Consensus 219 ~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~-----------g-~~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 219 RLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPD-----------G-AVTVEATRGVVLATGGFPND 278 (572)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCC-----------C-cEEEEeCCEEEEcCCCcccC
Confidence 4788899999999999999999765 45553 5432211 1 2234 458999999999973
No 104
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.36 E-value=0.011 Score=51.21 Aligned_cols=63 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++|+.+++|++++...+++++...++. .|++.+++||.||-|-|.+| .+.+.+
T Consensus 116 ~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~----------~g~~~~i~adlvVgADG~~S-~vR~~l 178 (356)
T PF01494_consen 116 ALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGE----------DGEEETIEADLVVGADGAHS-KVRKQL 178 (356)
T ss_dssp HHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETC----------TCEEEEEEESEEEE-SGTT--HHHHHT
T ss_pred hhhhhhhhhhhhheeeeeccccccccccccccccccc----------CCceeEEEEeeeecccCccc-chhhhc
Confidence 4678889999999999999999988888764443331 13345799999999999987 555656
No 105
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.32 E-value=0.008 Score=55.69 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=44.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+|++.|+++|++|+++++|+.|..++++ +.+.+.+|. .+++|.||.++..
T Consensus 229 aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~---------------~~~ad~vv~~~~~ 279 (487)
T COG1233 229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGE---------------NIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccc---------------eeccceeEecCch
Confidence 7899999999999999999999998875 567777662 6999999999988
No 106
>PRK09897 hypothetical protein; Provisional
Probab=96.28 E-value=0.015 Score=54.50 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=41.9
Q ss_pred hhHHHHHCC--cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHG--TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~G--a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+++.+.+.| ++++.+++|++++..++++.|+++++. ..+.||.||+|+|...
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------------~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------------PSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------------eEEEcCEEEECCCCCC
Confidence 556677787 788899999999998888998885531 1689999999999743
No 107
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.25 E-value=0.016 Score=45.17 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred HCCcEEE-cCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 9 NHGTTFS-NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 9 ~~Ga~i~-~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
..|.++. .+.+|++|+..++++.|.+++|. .+.||.||+|+|.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDDGYRVVTADGQ---------------SIRADAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCCcEEEEECCCC---------------EEEeCEEEECCCC
Confidence 3454332 46799999999999988888873 7999999999994
No 108
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.25 E-value=0.017 Score=54.43 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=42.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.+++.|++++++++|+++...++++. |.. .++ +...+.|+.||+|+|.++
T Consensus 134 ~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 134 TLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTG-------------EIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCC-------------cEEEEECCeEEECCCccc
Confidence 466778888999999999999988777664 433 233 234699999999999986
No 109
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.23 E-value=0.015 Score=54.96 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=41.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~~ 70 (240)
+|.+.++++|++|+++++|+++..+++++. |..... +.++.|.| +.||+|+|.+..-
T Consensus 222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~------------g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 222 GLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHR------------GREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEEC------------CcEEEEEcCCEEEEecCCcccc
Confidence 466778899999999999999987666654 543221 12345777 5799999998853
No 110
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.17 E-value=0.02 Score=54.88 Aligned_cols=57 Identities=7% Similarity=-0.053 Sum_probs=41.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.+++.|++|++++.|+++..+++++. |...+.. .+....+.|+.||+|+|.++.
T Consensus 176 L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~----------~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 176 LSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLV----------TGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECC----------CCcEEEEECCEEEECCCCccc
Confidence 44467788999999999999988777664 5543210 122346999999999999774
No 111
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.17 E-value=0.018 Score=55.38 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=42.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|+++++|+++..+++++. |.. .+| +...+.|+.||+|+|.++.
T Consensus 163 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G-------------~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 163 AVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITG-------------ELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCcccC
Confidence 466788899999999999999998777643 332 233 2346889999999998874
No 112
>PRK06996 hypothetical protein; Provisional
Probab=96.16 E-value=0.039 Score=49.53 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=47.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+++.|++++.+++|++++..+++|+|+..++.. +.+++||.||.|-|.-...+.+.+
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g------------~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQG------------ARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCc------------ceEEeeeEEEECCCCCchHHHHHc
Confidence 47778888999999999999998888888887765411 127999999999996333344555
No 113
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.08 E-value=0.022 Score=53.76 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=43.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.+++.|++|++++.++++..+++++. |...+.. .++...+.|+.||+|+|.+.
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMK----------TLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECC----------CCeEEEEEeCeEEECCCccc
Confidence 466777888999999999999998777764 5443210 12345799999999999876
No 114
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.08 E-value=0.018 Score=54.66 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=41.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~ 69 (240)
|.+++++.|++|+++++|+.+..+ ++++. |..... +.++.|.|+ .||+|+|.+..
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~------------~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVERE------------GRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeC------------CcEEEEEeceeEEEecCcccC
Confidence 456778889999999999999885 45564 544322 234579998 59999999884
No 115
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.05 E-value=0.024 Score=53.48 Aligned_cols=58 Identities=16% Similarity=-0.017 Sum_probs=43.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|+++++|+++..+++++. |...+. ..++...|.|+.||+|+|.++.
T Consensus 124 ~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~----------~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 124 TLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCL----------ETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc----------CCCcEEEEEeCeEEECCCCccc
Confidence 466778889999999999999988777654 433111 0123457999999999999874
No 116
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.05 E-value=0.024 Score=54.04 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=41.0
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++| ++|+++++|+++..+++++. |. +.++ ....+.|+.||+|+|.|+.
T Consensus 137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 137 IVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVREN-------------KFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCC-------------cEEEEECCEEEECCCchhh
Confidence 3556777776 99999999999987777553 43 2222 2346999999999999875
No 117
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.04 E-value=0.027 Score=51.23 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=42.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+..+++|++++++++|++++..++++. +.+.++ ++..++||.||+|+|...
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g-------------~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH-------------GDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC-------------ceEEEECCEEEEeCCCcc
Confidence 466778889999999999999998887765 444433 133699999999999753
No 118
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.00 E-value=0.02 Score=52.72 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=41.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+|.+.++++|++++++ .|+.+..+++++. |.++.. .+.|+.||+|+|.|+..
T Consensus 125 ~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~----------------~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 125 ILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGE----------------LLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCE----------------EEEeCeEEECCCcCcCC
Confidence 4677888899999875 8989887677664 665332 69999999999999864
No 119
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.99 E-value=0.023 Score=50.77 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=45.5
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+++.+. |++++.+++|++++.++++++|++++|. +++||.||.|-|.+| .+.+.+
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~~~lvIgADG~~S-~vR~~~ 173 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGA---------------EIEAKWVIGADGANS-QVRQLA 173 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCCc-hhHHhc
Confidence 44444444 7999999999999988888888887773 799999999999987 445555
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.97 E-value=0.021 Score=52.90 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=42.7
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+|.+.+++ .|++|+++++|+++..+++++. |.+.+.. ....+.|+.||+|+|.|+..
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~------------~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRE------------TVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECC------------cEEEEEcCEEEECCCcccCC
Confidence 46677777 6999999999999987766654 5443321 12368999999999999863
No 121
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.95 E-value=0.024 Score=53.48 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=41.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~ 69 (240)
|.+.++++|++++++++|+++..+++++. |..... +++..|.|+ .||+|+|.+..
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~------------g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAES------------GEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeC------------CcEEEEEeceeEEEccCCcCc
Confidence 45667788999999999999988777664 544321 224579997 59999998875
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.93 E-value=0.029 Score=53.06 Aligned_cols=55 Identities=20% Similarity=0.107 Sum_probs=42.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|+++++|+++..+++++. |. +.++ +...+.|+.||+|+|.++.
T Consensus 140 ~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 140 ELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADG-------------RLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCEEEECCCCCcC
Confidence 467778889999999999999987777653 32 2333 2336899999999999864
No 123
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=95.91 E-value=0.019 Score=49.26 Aligned_cols=64 Identities=20% Similarity=0.140 Sum_probs=43.4
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~~ 75 (240)
+...|.++ |++|++++.|+.|... +++++ |+..+.... .....+.++.||+|||+ .+.+|+...
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~---------~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG---------VQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS---------EEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc---------ceeeeccceeEEeccCCCCChhhhccc
Confidence 45566667 9999999999999665 45543 554333110 12346889999999997 566777666
No 124
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.89 E-value=0.017 Score=53.81 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=40.6
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.++++ |++|+++++|+++..+++++. |.+.+. +.+..+.|+.||+|+|.++
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~------------~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA------------GGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC------------CeEEEEECCEEEEcCCCCc
Confidence 466677765 899999999999987777654 544322 1133689999999999975
No 125
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.88 E-value=0.027 Score=51.36 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=39.5
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++ .|++|+++++|++|..+++++. |. +.++ ....+.|+.||+|+|.++.
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g-------------~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDN-------------KQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECC-------------cEEEEEcCeEEEccCcccc
Confidence 35556665 5999999999999987666543 33 2233 1236899999999998663
No 126
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.86 E-value=0.029 Score=51.18 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=43.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|++++++++|++++..++.+.|+++++ ++.+|.||+|+|.+.+.
T Consensus 205 l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g----------------~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDIILNAHVERISHHENQVQVHSEHA----------------QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC----------------eEEeCEEEEeecCCcCC
Confidence 45667889999999999999987777777777666 69999999999998764
No 127
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.82 E-value=0.03 Score=52.20 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=38.9
Q ss_pred hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCCh
Q 026314 3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa 68 (240)
|.+.+.+ .|++|+++++|+++..+++++. |..... +.+..|.|+ .||+|||.+.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~------------g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERG------------GERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEEC------------CcEEEEEeCceEEEeCCCcc
Confidence 3444445 4999999999999988777664 543222 234579996 7999999985
No 128
>PRK14727 putative mercuric reductase; Provisional
Probab=95.80 E-value=0.034 Score=51.35 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=44.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|++++++++|+.++..++.+.|.++++ ++.||.||+|+|.+.+.
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g----------------~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG----------------ELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC----------------eEEeCEEEEccCCCCCc
Confidence 45567789999999999999987777777877666 79999999999998764
No 129
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=95.75 E-value=0.028 Score=51.48 Aligned_cols=54 Identities=19% Similarity=0.031 Sum_probs=44.3
Q ss_pred ChhhHHHHHCCcEEEcCceEEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 1 MWVQGEAENHGTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
++|++.++.+|++++++++|+.|...++ + +.|++++|+ ++.|+.||.....|..
T Consensus 236 qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge---------------~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 236 QAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE---------------VAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc---------------EEECCEEEECcccccc
Confidence 4688889999999999999999987753 3 458887773 7999999997777654
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.75 E-value=0.032 Score=53.28 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=42.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEE-eCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++|++|+++++|+++.. +++++. |.. .+| +...+.|+.||+|+|.++.
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDG-------------SIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCC-------------eEEEEECCcEEEeCCCCcc
Confidence 467778889999999999999887 556554 443 233 3457999999999999863
No 131
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.71 E-value=0.037 Score=49.26 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=46.5
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+++++.+ ++++++++|++++..++++.|+++++ +++||.||-|=|.+| .+.+.+
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~----------------~~~adlvIgADG~~S-~vR~~l 166 (374)
T PRK06617 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK----------------QIKCNLLIICDGANS-KVRSHY 166 (374)
T ss_pred HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC----------------EEeeCEEEEeCCCCc-hhHHhc
Confidence 4566677765 89999999999998888888888665 799999999999977 455555
No 132
>PRK05868 hypothetical protein; Validated
Probab=95.69 E-value=0.035 Score=49.50 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+...|++++++++|++++..+++++|+.++|. +++||.||-|-|.+| .+.+.+
T Consensus 114 ~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~---------------~~~adlvIgADG~~S-~vR~~~ 166 (372)
T PRK05868 114 ATQPSVEYLFDDSISTLQDDGDSVRVTFERAA---------------AREFDLVIGADGLHS-NVRRLV 166 (372)
T ss_pred hccCCcEEEeCCEEEEEEecCCeEEEEECCCC---------------eEEeCEEEECCCCCc-hHHHHh
Confidence 34569999999999999887788888888773 799999999999988 455544
No 133
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.64 E-value=0.027 Score=52.47 Aligned_cols=55 Identities=18% Similarity=0.043 Sum_probs=40.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.++ .|++|+++++|+++...++++. |.+.+. .++...+.|+.||+|+|.++.
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-----------~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDS-----------EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEEC-----------CCcEEEEEcCeEEEecCCCcc
Confidence 444454 6999999999999987777654 554332 123446899999999999875
No 134
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.63 E-value=0.04 Score=49.53 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=45.7
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+.+. |++++++++|++++..++.+.|++++|+ +++||.||-|-|.++ .+.+.+
T Consensus 117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~lvIgADG~~S-~vR~~~ 174 (405)
T PRK08850 117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQ---------------ALTAKLVVGADGANS-WLRRQM 174 (405)
T ss_pred HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCC---------------EEEeCEEEEeCCCCC-hhHHHc
Confidence 44555554 7999999999999888888888887763 799999999999876 455555
No 135
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.62 E-value=0.051 Score=46.00 Aligned_cols=63 Identities=24% Similarity=0.112 Sum_probs=43.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC--eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN--CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~--~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|.+.|.++|++++++++|+++...++ ++. |.+.......+ .. ..+..+++|+.||.|+|..+
T Consensus 105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~---g~-~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA---GL-HVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc---CC-CCCCEEEEcCEEEEeecCCc
Confidence 467788999999999999999988776 343 55532200000 00 01356899999999999865
No 136
>PRK08275 putative oxidoreductase; Provisional
Probab=95.59 E-value=0.048 Score=51.34 Aligned_cols=55 Identities=9% Similarity=0.011 Sum_probs=41.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|.+.+++.|++|+++++|+++..+ ++++. |.. .+| +...+.|+.||+|+|.++.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTG-------------EFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCC-------------cEEEEECCEEEECCCCccc
Confidence 4667788899999999999999876 55553 432 233 2346899999999999763
No 137
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.57 E-value=0.052 Score=48.80 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=44.4
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~ 75 (240)
+.+..+++|++++++++|++++. ++.+.|++.+|. ++.||.||+|+|...+. |++.+
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~---------------~i~aD~Vv~a~G~~pn~~l~~~~ 249 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGE---------------TLQADVVIYGIGISANDQLAREA 249 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCC---------------EEECCEEEECCCCChhhHHHHhc
Confidence 44556788999999999999976 556677777663 79999999999998754 44444
No 138
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.53 E-value=0.046 Score=51.70 Aligned_cols=58 Identities=16% Similarity=0.034 Sum_probs=42.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|+++++++++..+ ++++. |...+. ..+....|.|+.||+|+|.++.
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~----------~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICI----------ETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEc----------CCCcEEEEecCeEEECCCCccc
Confidence 4667788889999999999999875 55553 443111 0123457999999999999884
No 139
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.53 E-value=0.046 Score=52.03 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=42.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|++++.|+++..++ +++. |.. .+| ....|.|+.||+|+|.+..
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDG-------------TLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCC-------------cEEEEEcCEEEECCCCCcc
Confidence 46677888999999999999998765 5554 443 233 3457999999999999875
No 140
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.52 E-value=0.044 Score=51.95 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=41.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC----CeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG----NCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~----~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|++++.|+++..++ +++. |.. .++ +...+.|+.||+|+|.++.
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATG-------------EIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCC-------------eEEEEEeCeEEECCCCCcc
Confidence 46777888999999999999998765 5553 433 223 2346899999999999873
No 141
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.51 E-value=0.063 Score=48.84 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=43.4
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
+.+.++++|++++++++|+++...++...+.++++ ++.||.||+|+|...+ .+++.+
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~d~vi~a~G~~p~~~~l~~~ 254 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG----------------EYEADVVIVATGVKPNTEFLEDT 254 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC----------------EEEcCEEEECcCCCcCHHHHHhc
Confidence 45567889999999999999965444344666655 7999999999998764 455544
No 142
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.46 E-value=0.04 Score=50.63 Aligned_cols=51 Identities=18% Similarity=0.414 Sum_probs=37.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|.+.|+++||+++.++ |+.+...++ .+ .|++++|. +++||.||-|+|.-+
T Consensus 159 ~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~---------------~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 159 FLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGR---------------TIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSE---------------EEEESEEEE-SGGG-
T ss_pred HHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCC---------------EEEEeEEEECCCccc
Confidence 47889999999999875 777776654 44 48888873 799999999999755
No 143
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.45 E-value=0.055 Score=49.55 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|++++++++|++++..++++.+++++|. ++++|.||+|+|...+.
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK---------------KIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC---------------EEEeCEEEEeecCCccc
Confidence 556778899999999999999877777777766552 69999999999987653
No 144
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.44 E-value=0.057 Score=50.39 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=43.3
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+.++++|++++++++|+++...++.+.|+++++. .+.|+.||+|+|...
T Consensus 272 l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~---------------~i~a~~vViAtG~~~ 322 (517)
T PRK15317 272 LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA---------------VLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEcCEEEECCCCCc
Confidence 556778899999999999999887778888886662 699999999999844
No 145
>PLN02268 probable polyamine oxidase
Probab=95.27 E-value=0.043 Score=49.80 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+.|.+|+++++|++|...+++|+|++.+|. ++.||+||+|.-+..
T Consensus 207 l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VIva~P~~~ 252 (435)
T PLN02268 207 LAKGLDIRLNHRVTKIVRRYNGVKVTVEDGT---------------TFVADAAIIAVPLGV 252 (435)
T ss_pred HhccCceeCCCeeEEEEEcCCcEEEEECCCc---------------EEEcCEEEEecCHHH
Confidence 3457899999999999998888999887773 699999999986544
No 146
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.22 E-value=0.056 Score=50.78 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=40.4
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCe-EE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|.+.+++.|++|+++++|+++..++++ +. |.. .++ ..+.+.|+.||+|+|.++
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNG-------------EIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCC-------------cEEEEEcCcEEECCCCCC
Confidence 566677789999999999999876654 53 433 233 244799999999999976
No 147
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.20 E-value=0.068 Score=51.23 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=42.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+++.|++|++++.++++..+ ++++. |...+.. .|+...|.|+.||+|+|.+..
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNME----------DGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcC----------CCeEEEEEcCeEEECCCCCcc
Confidence 4667788899999999999998776 45553 4432110 123457999999999999874
No 148
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.19 E-value=0.061 Score=49.69 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+++..+++|++|+.+++|++|+.++ ++ + .|++.+|.++ .++.||.||.|+.+|.
T Consensus 224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~------------~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK------------KVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc------------eEEECCEEEECCChHH
Confidence 36677788999999999999998864 22 3 2445433111 1589999999999875
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.18 E-value=0.077 Score=49.50 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=42.7
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+.++++|++++++++|+++...++.+.|++++|. .+.+|.||+|+|...
T Consensus 273 l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 273 LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE---------------VLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCc
Confidence 456677889999999999999887777888887662 699999999999864
No 150
>PRK14694 putative mercuric reductase; Provisional
Probab=95.14 E-value=0.075 Score=48.91 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=42.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|+++++++.|+.++..++.+.+.++++ ++++|.||+|+|...+.
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYNGREFILETNAG----------------TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC----------------EEEeCEEEEccCCCCCc
Confidence 45566788999999999999987766666777655 79999999999987765
No 151
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.11 E-value=0.076 Score=50.45 Aligned_cols=58 Identities=7% Similarity=-0.089 Sum_probs=41.9
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|.+.+++.|++|++++.|+++... ++++. |...+.. .+....+.|+.||+|+|.++.
T Consensus 148 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIE----------TGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcC----------CCcEEEEEcCeEEECCCCccc
Confidence 4666778889999999999999875 55553 4431110 123456899999999999875
No 152
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.10 E-value=0.024 Score=51.39 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=48.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
++++.|+++|++|++.+.|.+|..++++.. |...+|. +++++.||--|+.|-..
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~---------------ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT---------------EVRSKIVVSNATPWDTF 323 (561)
T ss_pred HHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc---------------EEEeeeeecCCchHHHH
Confidence 688999999999999999999999887764 9999984 79999999999999754
No 153
>PRK06116 glutathione reductase; Validated
Probab=95.08 E-value=0.075 Score=48.56 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=41.3
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+..+++|++++++++|++++..+++ +.|++.+|. +++||.||+|+|.-.
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE---------------TLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc---------------EEEeCEEEEeeCCCc
Confidence 456678899999999999999876554 677776662 699999999999754
No 154
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.06 E-value=0.073 Score=47.67 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=44.9
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEE-eCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.+.+.|++++++++|++++. .++.+.|+. .+| ++.+++||.||-|-|.+| .+.+.+
T Consensus 108 ~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G-------------~~~~i~ad~vVgADG~~S-~vR~~~ 169 (392)
T PRK08243 108 DLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDG-------------EEHRLDCDFIAGCDGFHG-VSRASI 169 (392)
T ss_pred HHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCC-------------eEEEEEeCEEEECCCCCC-chhhhc
Confidence 356677888999999999999986 445555655 234 234799999999999987 566665
No 155
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.05 E-value=0.07 Score=50.16 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=41.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++|++++++++|+++...+ +++. |...+ +. .+....+.|+.||+|+|.++.
T Consensus 149 ~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~----------~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 149 ALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGS----------PDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCC----------CCcEEEEEcCeEEECCCCCCC
Confidence 46677888999999999999998765 4443 43320 10 011236999999999999874
No 156
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.04 E-value=0.051 Score=49.65 Aligned_cols=62 Identities=8% Similarity=0.078 Sum_probs=42.5
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+|++.++++|++|+++++|++|+..++ .+ .|++.+++ ++..+++.||.||.|+.+.+ +.+++
T Consensus 218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~----------~~~~~~~~a~~VI~a~p~~~--~~~lL 281 (453)
T TIGR02731 218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE----------GQRRFEVTADAYVSAMPVDI--FKLLL 281 (453)
T ss_pred HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC----------CCceeEEECCEEEEcCCHHH--HHhhC
Confidence 466777788999999999999986544 34 36664441 01123589999999997643 44444
No 157
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.061 Score=46.84 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=42.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l 71 (240)
+.+.|++.|+++.. .+|..++..++.++|+|+++ +++||.||+|+|.....+
T Consensus 67 ~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~----------------~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 67 MKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG----------------TYEAKAVIIATGAGARKL 118 (305)
T ss_pred HHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC----------------eEEEeEEEECcCCcccCC
Confidence 45667778999997 88888887766778999998 799999999999866443
No 158
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.87 E-value=0.54 Score=42.82 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=44.9
Q ss_pred hhhHHHHHCC---cEEEcCceEEEEEEe-------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314 2 WVQGEAENHG---TTFSNNTSVIGGHLE-------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71 (240)
Q Consensus 2 al~~~A~~~G---a~i~~~~~V~~i~~~-------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l 71 (240)
.|.+.+++.+ ++++++++|++++.. +++++|++.+|+ +++||.||-|=|.+| .+
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~---------------~i~a~llVgADG~~S-~v 185 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQ---------------VLYTKLLIGADGSNS-NV 185 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCC---------------EEEeeEEEEecCCCC-hh
Confidence 3566677765 899999999999753 356778887763 799999999999977 45
Q ss_pred HHHh
Q 026314 72 AKRF 75 (240)
Q Consensus 72 ~~~~ 75 (240)
.+.+
T Consensus 186 R~~~ 189 (437)
T TIGR01989 186 RKAA 189 (437)
T ss_pred HHHc
Confidence 5555
No 159
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.83 E-value=0.096 Score=47.23 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=40.0
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
...++.+++|++|+..+++|+|++++|. +++||.||.|.|.||. +.+.+
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vVgADG~~S~-vR~~l 165 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGT---------------EYRCDLLIGADGIKSA-LRDYV 165 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCC---------------EEEeeEEEECCCccHH-HHHHh
Confidence 4568889999999988888998887773 6999999999999984 44433
No 160
>PLN02676 polyamine oxidase
Probab=94.76 E-value=0.059 Score=49.96 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=37.2
Q ss_pred cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+|+++++|++|...+++++|+|.+|. +++||+||+|..+..
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~---------------~~~a~~VIvtvPl~v 286 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGS---------------VYRAKYVIVSVSLGV 286 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCC---------------EEEeCEEEEccChHH
Confidence 689999999999998889999998873 799999999998644
No 161
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=94.69 E-value=0.12 Score=49.38 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=38.6
Q ss_pred HHHHHCCcEEEcCceEEEEEEeC---CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEG---NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~---~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
..+++.+++|+++++|+++...+ +++. |...+. ..++.+.+.|+.||+|+|.|+.
T Consensus 134 ~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~----------~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 134 EAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV----------RANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe----------CCCcEEEEECCEEEECCCcccc
Confidence 34556678999999999998764 4543 443111 0133557999999999999975
No 162
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.66 E-value=0.11 Score=47.66 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=42.4
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|++|+..++++.+++.++ +++.++++|.||+|+|...+
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g------------g~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG------------GKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC------------CeeEEEEeCEEEEeeCCccC
Confidence 45567788999999999999988777777766543 11237999999999998654
No 163
>PRK06753 hypothetical protein; Provisional
Probab=94.64 E-value=0.086 Score=46.66 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=40.8
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
..+|+++++|++++..++++.|++++|. ++++|.||-|-|.+| .+.+.+
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~~~vigadG~~S-~vR~~~ 158 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGE---------------SEAFDLCIGADGIHS-KVRQSV 158 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCC---------------EEecCEEEECCCcch-HHHHHh
Confidence 4689999999999988888988887773 689999999999877 455555
No 164
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.64 E-value=0.12 Score=47.37 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=41.7
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|++++..++++.|++.++. ++++|.||+|+|.-.+
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~viva~G~~pn 264 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE---------------EIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc---------------EeecCEEEEeeCCCcC
Confidence 445667889999999999999876666777776552 6999999999997543
No 165
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.63 E-value=0.096 Score=35.76 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCC
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES 37 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g 37 (240)
+.+..+++|+++++++.|++|+..+++++|++++|
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 45677889999999999999999987777888775
No 166
>PRK07538 hypothetical protein; Provisional
Probab=94.62 E-value=0.1 Score=47.10 Aligned_cols=62 Identities=8% Similarity=0.249 Sum_probs=43.8
Q ss_pred hhHHHHH-CCc-EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAEN-HGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~-~Ga-~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+.+ .|. .|+.+++|++++..++++.+...++. .+++.+++||.||-|-|.+|. +.+.+
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~----------~g~~~~~~adlvIgADG~~S~-vR~~l 171 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA----------GGDLVSVRGDVLIGADGIHSA-VRAQL 171 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC----------CCccceEEeeEEEECCCCCHH-Hhhhh
Confidence 5556655 575 69999999999887776655554431 123457999999999999774 44544
No 167
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.61 E-value=0.13 Score=49.39 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=42.9
Q ss_pred HHCCcE-EEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 8 ENHGTT-FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 8 ~~~Ga~-i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
++.|.+ ++++++|++|+..+++++|++++|. +++||.||.|.|.|+..-..++
T Consensus 202 ~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~---------------ti~aDlVVGADG~~S~vR~~l~ 255 (668)
T PLN02927 202 RAVGEDVIRNESNVVDFEDSGDKVTVVLENGQ---------------RYEGDLLVGADGIWSKVRNNLF 255 (668)
T ss_pred hhCCCCEEEcCCEEEEEEEeCCEEEEEECCCC---------------EEEcCEEEECCCCCcHHHHHhc
Confidence 344554 6788999999988889998887773 6899999999999997665555
No 168
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.61 E-value=0.12 Score=47.20 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=42.7
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|++|+..++++.+++.+|+ +.++++|.||+|+|...+
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~-------------~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGE-------------TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCc-------------EEEEEeCEEEEecCCccc
Confidence 445677889999999999999887777777765541 126999999999998654
No 169
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.60 E-value=0.13 Score=49.00 Aligned_cols=58 Identities=12% Similarity=-0.057 Sum_probs=41.3
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+.+.|+++++++.|+++... ++++. |...+.. .+....+.|+.||+|+|.++.
T Consensus 153 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 153 TLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME----------TGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcC----------CCeEEEEECCeEEECCCCccc
Confidence 3667788899999999999999875 45543 5432110 122346899999999999764
No 170
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.59 E-value=0.13 Score=49.30 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=33.7
Q ss_pred cEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 12 TTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 12 a~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
++|++++.|+++..+++++. |.. .++ ....+.|+.||+|+|.+.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESG-------------RFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCC-------------eEEEEEcCeEEECCCccc
Confidence 99999999999988777553 332 222 244699999999999865
No 171
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.56 E-value=0.1 Score=49.55 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=39.5
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+.+.+. |++++ +++|+++..+++++. |.+.+|. .+.|+.||+|+|.|++
T Consensus 106 L~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~---------------~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 106 MREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGL---------------EFRAKAVVLTTGTFLR 158 (618)
T ss_pred HHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCC---------------EEECCEEEEeeCcchh
Confidence 44455555 78886 578999988888775 8887773 7999999999998763
No 172
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.47 E-value=0.12 Score=48.50 Aligned_cols=54 Identities=22% Similarity=0.134 Sum_probs=39.8
Q ss_pred hhHHHHHCCc--EEEcCceEEEEEEeC-----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGT--TFSNNTSVIGGHLEG-----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga--~i~~~~~V~~i~~~~-----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|...|+..|- .|+++|+|+++++.+ ++|+|+++++ +++.+-..|.||+|+|.++
T Consensus 90 l~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~------------g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 90 LESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND------------GKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT------------TEEEEEEECEEEEEE-SSS
T ss_pred HHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC------------CeEEEEEeCeEEEcCCCcC
Confidence 4456666665 799999999999865 4799988654 2233566899999999876
No 173
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.041 Score=45.61 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=43.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l 71 (240)
+.+.+.+.|.+|++ ..|.++..++..++|.|+.+ .+.||.||+|+|+-+.+|
T Consensus 76 mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~~----------------~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 76 MRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDAR----------------PVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHhhcceeee-eehhhccccCCCeEEEecCC----------------ceeeeeEEEecccceeee
Confidence 45678889999997 56888988888899999877 899999999999977554
No 174
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=94.45 E-value=0.14 Score=48.61 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=37.6
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
++.+.+++. |++++. .+|+++... ++++ .|.+.+|. .+.|+.||+|+|.|
T Consensus 101 ~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~---------------~I~Ad~VILATGtf 153 (617)
T TIGR00136 101 AMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGL---------------KFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCC---------------EEECCEEEEccCcc
Confidence 355566666 778875 578888665 5555 48887773 79999999999999
No 175
>PRK13748 putative mercuric reductase; Provisional
Probab=94.44 E-value=0.14 Score=48.18 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=42.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|++|+++++|+.++..++.+.+.++++ ++++|.||+|+|...+.
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG----------------ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC----------------eEEeCEEEEccCCCcCC
Confidence 44566788999999999999987777777777666 79999999999986654
No 176
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.37 E-value=0.16 Score=48.43 Aligned_cols=49 Identities=8% Similarity=-0.130 Sum_probs=34.7
Q ss_pred CCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 10 HGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|++|+++++|+++...+ +++. |...+.. .+....+.|+.||+|+|.++
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~----------~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLV----------TGEIETHSADAVILATGGYG 196 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECC----------CCcEEEEEcCEEEECCCCCc
Confidence 389999999999998754 4553 5543210 12234689999999999974
No 177
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.37 E-value=0.15 Score=46.22 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=36.0
Q ss_pred HCCc-EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 9 NHGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 9 ~~Ga-~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
..+. +|+++++|++|+..+++|.|++++|+ ++.||.||+|+-+
T Consensus 230 ~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~vI~a~p~ 273 (451)
T PRK11883 230 KLPAGTIHKGTPVTKIDKSGDGYEIVLSNGG---------------EIEADAVIVAVPH 273 (451)
T ss_pred hCcCCeEEeCCEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECCCH
Confidence 3344 89999999999998888888887763 6999999999875
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.34 E-value=0.13 Score=48.45 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=40.5
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+.++++|++++ +++|+.+...++.+.|++.++ .+.++.||+|+|.+..
T Consensus 66 l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g----------------~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 66 MRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG----------------DYKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC----------------EEEEeEEEECCCCccC
Confidence 4456778899986 789999987766677888766 7999999999999754
No 179
>PRK07208 hypothetical protein; Provisional
Probab=94.34 E-value=0.13 Score=47.39 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=39.8
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE--EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN--VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~--V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|++.+++.|++|+++++|+.|..+++++. +...+. .|.+.++.||.||.|.-++.
T Consensus 223 ~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~-----------~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 223 TAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT-----------DGTEETVTADQVISSMPLRE 280 (479)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcC-----------CCCEEEEEcCEEEECCCHHH
Confidence 466777788999999999999998877643 332221 01223689999999888653
No 180
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.24 E-value=0.16 Score=46.29 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=39.7
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+..+++|++++++++|++|+..++.+.+++++. ++++|.||+|+|.-.+
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~----------------~i~~D~viva~G~~p~ 254 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE----------------TYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe----------------EEEcCEEEEeeCCCCC
Confidence 3456788999999999999987666666665433 7999999999998654
No 181
>PLN02507 glutathione reductase
Probab=94.24 E-value=0.17 Score=47.06 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=42.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|+++++++.|++++..++++.|.+.+|. ++++|.|++|.|.-.+
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE---------------EFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc---------------EEEcCEEEEeecCCCC
Confidence 344567889999999999999877777777776652 6999999999997554
No 182
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.20 E-value=0.16 Score=45.56 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=43.8
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+++.+ .|++++++++|++++..+++++|+..++.. +.+++||.||-|=|.+| .+.+.+
T Consensus 112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~------------~~~~~adlvIgADG~~S-~vR~~~ 173 (400)
T PRK06475 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNS------------VETVSAAYLIACDGVWS-MLRAKA 173 (400)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCC------------CcEEecCEEEECCCccH-hHHhhc
Confidence 35556655 489999999999998887888776532211 12689999999999987 344444
No 183
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.01 E-value=0.2 Score=47.22 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=37.1
Q ss_pred CCcEEEcCceEEEEEEeCCeEE-EEec---CCcccccCCC--CCCCCCceeEecCEEEEcCCCChH
Q 026314 10 HGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDG--VSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~--~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|++|+++++++++..+++++. |... ++. +.-.. ..+.+.+..|.|+.||+|+|.++.
T Consensus 165 ~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~--~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 165 GLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSD--AERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred CCceEEecCEeeEEEEeCCEEEEEEEEeccccc--ccccccccccccceEEEecCEEEEeCCCccc
Confidence 3699999999999988777664 5531 110 00000 001123457999999999999884
No 184
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.93 E-value=0.2 Score=47.51 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=39.3
Q ss_pred hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
|.+.+++ .|++++++++|+++...++++. |.. .++ +...+.|+.||+|+|.++
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRG-------------EFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCcEEEcCchhc
Confidence 5566665 5999999999999987777653 332 233 234689999999999984
No 185
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=93.92 E-value=0.14 Score=48.23 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=41.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEe--C--CeEE-EEecC-CcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLE--G--NCMN-VYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~--~--~~~~-V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
-|.+.++++|++|+++++|++|..+ + +.++ |...+ |+ .+......+|.||+|+|..+..
T Consensus 231 PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~----------~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 231 PLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGK----------EETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCc----------eeEEEecCCCEEEEeCCcCccc
Confidence 3678899999999999999999875 3 2343 54432 21 0112246789999999988744
No 186
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.76 E-value=0.12 Score=48.66 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=38.5
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeC--CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEG--NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~--~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.++++ |++|+++++|+++..++ +++. |.+.++ +....+.|+.||+|+|.++
T Consensus 139 ~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~------------g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 139 TLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQ------------GQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEEC------------CeEEEEEcCEEEEcCCCCc
Confidence 355666654 99999999999998763 5543 443222 1233589999999999863
No 187
>PRK07236 hypothetical protein; Provisional
Probab=93.74 E-value=0.2 Score=44.78 Aligned_cols=49 Identities=10% Similarity=0.285 Sum_probs=41.0
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+.+++.+++|++++..+++++|+.++|. +++||.||.|-|.+|. +.+.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vIgADG~~S~-vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGR---------------RETADLLVGADGGRST-VRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCch-HHHHh
Confidence 4679999999999988888888887773 7999999999999885 44544
No 188
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.66 E-value=0.26 Score=45.36 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=42.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|++++++++|++++..++++.|.+.+|. ++++|.||+|+|.-.+.
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR---------------TVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc---------------EEEecEEEEeecCCcCC
Confidence 345567889999999999999877777777766552 79999999999976543
No 189
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.65 E-value=0.23 Score=47.10 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=39.7
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.+.+. |++++++++|+++...++++. |. ..++ ....+.|+.||+|+|.++.
T Consensus 139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEECCEEEECCCCCcC
Confidence 45555554 899999999999988777653 32 2333 2347999999999998774
No 190
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.59 E-value=0.23 Score=46.65 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=39.3
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeC------CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEG------NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~------~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.++++ |++|+++++|+++...+ +++. |...+. ..++...|.|+.||+|+|.++.
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~----------~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR----------NKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC----------CCCcEEEEecCeEEECCCCCCC
Confidence 55556665 89999999999987653 5553 443211 0123457999999999999773
No 191
>PRK02106 choline dehydrogenase; Validated
Probab=93.56 E-value=0.16 Score=47.89 Aligned_cols=60 Identities=20% Similarity=0.076 Sum_probs=41.1
Q ss_pred HHHH-HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHHh
Q 026314 5 GEAE-NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF 75 (240)
Q Consensus 5 ~~A~-~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~~ 75 (240)
..|. +.+++|++++.|+.|..++++++ |+..+.. +....+.++.||+|||++ +.+|+...
T Consensus 208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~-----------~~~~~~~ak~VILaaGai~TP~LLl~S 270 (560)
T PRK02106 208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGG-----------GRETARARREVILSAGAINSPQLLQLS 270 (560)
T ss_pred ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCC-----------cEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence 3344 44699999999999998876554 5543321 123357899999999986 45666543
No 192
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.34 E-value=0.33 Score=44.77 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=41.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|+.|+..++++.|+..++. +++.++++|.||+|+|.-.+
T Consensus 230 ~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~-----------g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 230 AAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDAD-----------GEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCC-----------CceeEEEcCEEEEccCCccC
Confidence 345567789999999999999877666666543321 12337999999999997554
No 193
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.30 E-value=0.28 Score=44.14 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=37.4
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+.+.++++ +.+|+ +.+|++|..+++++. |.|.+|. .+.||.||+|+|.
T Consensus 101 ~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~---------------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 101 MREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGE---------------EIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSE---------------EEEECEEEE-TTT
T ss_pred HHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCC---------------EEecCEEEEeccc
Confidence 44555664 67876 689999999998876 9998883 7999999999998
No 194
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.26 E-value=0.36 Score=44.37 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=40.3
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++|+++++|++++..++.+.+++. +| ++.++++|.||+|+|.-.+
T Consensus 219 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g-------------~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 219 IAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDG-------------KAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCC-------------CeEEEEeCEEEECcCcccC
Confidence 455667889999999999999876666655443 33 1236999999999997543
No 195
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.09 E-value=0.33 Score=44.57 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=39.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+..+++|++++++++|+.++..++.+.|++.... ...++++|.||+|+|.-.
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~------------~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPG------------GQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCC------------CceEEEeCEEEEeECCCc
Confidence 345567889999999999999876665555543210 012799999999999643
No 196
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.07 E-value=0.29 Score=44.65 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+++|++++.+++|++|..++..+.+.+.++ ++++++++|++|+|+|...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~------------~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKT------------NEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCC------------CcEEeeecCEEEECCCCCC
Confidence 557999999999999988877676665332 1234578999999999854
No 197
>PRK10262 thioredoxin reductase; Provisional
Probab=93.03 E-value=0.4 Score=41.63 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=37.6
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+.+...+.+++.+ +|++++..++.|+++++.+ .+.+|.||+|+|.+.
T Consensus 70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~----------------~~~~d~vilAtG~~~ 117 (321)
T PRK10262 70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG----------------EYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC----------------EEEECEEEECCCCCC
Confidence 44566778888764 6888888778888877555 799999999999975
No 198
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.96 E-value=0.42 Score=45.35 Aligned_cols=55 Identities=11% Similarity=-0.003 Sum_probs=40.5
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.+.+. |+++++++.|+++..+++++. |.. .+| ....+.|+.||+|+|.++.
T Consensus 137 ~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 137 TLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEG-------------RLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEecCEEEEcCCCCcc
Confidence 355556554 899999999999988777654 332 233 2347999999999999874
No 199
>PLN02815 L-aspartate oxidase
Probab=92.94 E-value=0.25 Score=47.02 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=39.4
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeC-Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEG-NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~-~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+|.+.++++ |++|+++++++++..++ ++ + .|...+.. .+....+.|+.||+|+|.+..
T Consensus 160 ~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 160 ALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR----------TGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC----------CCeEEEEEeceEEEcCCccee
Confidence 355666665 89999999999998753 32 3 24432110 123456899999999998874
No 200
>PRK06370 mercuric reductase; Validated
Probab=92.80 E-value=0.4 Score=44.01 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|++++..++++.|+.. ++ ..++++|.||+|+|.-.+
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~--------------~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGG--------------APEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCC--------------ceEEEeCEEEECcCCCcC
Confidence 445667889999999999999877665544432 22 126999999999996543
No 201
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.76 E-value=0.44 Score=43.71 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=39.5
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|++++..++.+.++++ ++ +.++++|.||+|+|.-.+
T Consensus 217 l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~-g~-------------~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 217 LREKLENDGVKIFTGAALKGLNSYKKQALFEYE-GS-------------IQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC-Cc-------------eEEEEeCEEEEecCCccC
Confidence 445677889999999999999876665555542 31 226999999999997554
No 202
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.47 E-value=0.29 Score=44.20 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=42.8
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+..+++|+++.+++.|++++.+ .|++++|+ + .|.|+.||=|||.-++.+.+.+
T Consensus 217 ~~L~~~GV~v~l~~~Vt~v~~~----~v~~~~g~-------------~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 217 RALEKLGVEVLLGTPVTEVTPD----GVTLKDGE-------------E-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHCCCEEEcCCceEEECCC----cEEEccCC-------------e-eEecCEEEEcCCCcCChhhhhc
Confidence 4567889999999999998753 25565562 0 4999999999999999999874
No 203
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.31 E-value=0.55 Score=43.21 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=39.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+..+++|+++++++.|++++..++++.++..... .+++.++++|.||+|+|.-.
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~----------~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA----------GGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcC----------CCceeEEEeCEEEEccCCcc
Confidence 445667889999999999999876666654432100 01223699999999999754
No 204
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=92.26 E-value=0.3 Score=44.42 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred hhHH-HHHCCcEEEcCceEEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 3 VQGE-AENHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 3 l~~~-A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
++++ +++.|..|..+.+|..|.+.+++|+|++.+ + +..+|++|++-=.
T Consensus 211 la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~----------------~~~ad~~i~tiPl 260 (450)
T COG1231 211 LAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVG----------------QYVADYVLVTIPL 260 (450)
T ss_pred HHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcc----------------eEEecEEEEecCH
Confidence 3444 356699999999999999999999999988 5 8999999998543
No 205
>PRK07846 mycothione reductase; Reviewed
Probab=92.22 E-value=0.48 Score=43.43 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
.+.|++++++++|++++..++++.|++.++. ++++|.||+|+|.-.+.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS---------------TVEADVLLVATGRVPNG 264 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCc---------------EeecCEEEEEECCccCc
Confidence 4578999999999999877666777776652 79999999999986543
No 206
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.20 E-value=0.47 Score=42.27 Aligned_cols=45 Identities=22% Similarity=0.053 Sum_probs=35.5
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.++++|++++.+++|+++..+.. .|+++++ .+++|+||+|+|...
T Consensus 67 ~~~~~gv~~~~~~~V~~id~~~~--~v~~~~~----------------~~~yd~LVlATG~~~ 111 (377)
T PRK04965 67 FAEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN----------------QWQYDKLVLATGASA 111 (377)
T ss_pred HHHhCCCEEECCCEEEEEECCCC--EEEECCe----------------EEeCCEEEECCCCCC
Confidence 45678999999999999987654 4555443 799999999999743
No 207
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.16 E-value=0.58 Score=41.32 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=41.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+.+..+++|++++++++|+.+.. + .|++++|. ++.+|.||+|+|...+......
T Consensus 197 ~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~ 250 (364)
T TIGR03169 197 VLRLLARRGIEVHEGAPVTRGPD--G--ALILADGR---------------TLPADAILWATGARAPPWLAES 250 (364)
T ss_pred HHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCC---------------EEecCEEEEccCCChhhHHHHc
Confidence 34567789999999999998853 3 45565553 7999999999998776655544
No 208
>PLN02529 lysine-specific histone demethylase 1
Probab=92.15 E-value=0.33 Score=47.34 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=35.1
Q ss_pred CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+..|+++++|+.|...+++|+|++.++ +++||+||+|.=+.
T Consensus 365 ~~L~IrLnt~V~~I~~~~dGVtV~t~~~----------------~~~AD~VIVTVPlg 406 (738)
T PLN02529 365 EGVPIFYGKTVDTIKYGNDGVEVIAGSQ----------------VFQADMVLCTVPLG 406 (738)
T ss_pred hcCCEEcCCceeEEEEcCCeEEEEECCE----------------EEEcCEEEECCCHH
Confidence 3667999999999999988999887544 79999999997543
No 209
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.06 E-value=0.53 Score=43.13 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=40.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|+++++++.|+.++..+++ +.|+.+++. ..+++|.||+|+|.-.+.
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~--------------~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK--------------SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc--------------EEEEcCEEEEeeCCCcCc
Confidence 445567889999999999999875443 566665551 169999999999976543
No 210
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.96 E-value=0.48 Score=48.74 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCcEEEcCceEEEEEEeC-----C----eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 10 HGTTFSNNTSVIGGHLEG-----N----CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~-----~----~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|++|+++++|+++..++ + ++. |...+.. ...|+...|.|+.||+|+|.+..
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~--------~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS--------DASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc--------cCCCcEEEEEeceEEEecCCccc
Confidence 499999999999998753 2 453 4443210 00133557999999999999886
No 211
>PLN02568 polyamine oxidase
Probab=91.91 E-value=0.43 Score=44.91 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=36.5
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.+|+++++|+.|...+++|+|++.+|. +++||+||+|.=+..
T Consensus 254 ~~~I~ln~~V~~I~~~~~~v~V~~~dG~---------------~~~aD~VIvTvPl~v 296 (539)
T PLN02568 254 PGTIQLGRKVTRIEWQDEPVKLHFADGS---------------TMTADHVIVTVSLGV 296 (539)
T ss_pred CCEEEeCCeEEEEEEeCCeEEEEEcCCC---------------EEEcCEEEEcCCHHH
Confidence 3479999999999999889999988773 699999999987543
No 212
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.85 E-value=0.57 Score=43.50 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=40.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|+++++++.|+.++..+++ ..|++.++. ++++|.||+|+|.-.+
T Consensus 237 l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK---------------TLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC---------------EEEcCEEEEeeCCCcC
Confidence 455677899999999999999876443 456665552 7999999999997544
No 213
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=91.80 E-value=0.52 Score=42.66 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEe--cCEEEEcCCCC
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLI--PKLVVNSAGLS 67 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~w 67 (240)
..++|++++.+++|+++...+..+.+.+..+. .+++ +|+||+|+|..
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~--------------~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTN--------------ETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCEEEEEECCCC--------------CEEecCCCEEEECCCCC
Confidence 37789999999999999877776766653221 1566 99999999974
No 214
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.72 E-value=0.56 Score=42.02 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=43.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
++.+..+++|-.|+++++|+.+.+.++ .+.|+..+.+ +++..+++||.+.+|.|=
T Consensus 257 ~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak----------~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 257 AFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAK----------TGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecC----------CCceeEEEeeEEEEEccC
Confidence 345667789999999999999999887 5666655443 244668999999999984
No 215
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.71 E-value=0.64 Score=44.21 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=38.5
Q ss_pred hhHHHHHCC----cEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHG----TTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~G----a~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.+++++ +++++++.++.+... ++++. |...+.. .++...+.|+.||+|+|.++.
T Consensus 139 L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 139 LDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLF----------TMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECC----------CCcEEEEECCEEEECCCCCcC
Confidence 455555544 789999999998875 45553 5442210 122346899999999999884
No 216
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.68 E-value=0.6 Score=43.29 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=40.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++|++++.++.++..++.+.|+..++.. ..++++|.||+|.|.-.+
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~------------~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN------------GIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc------------ceEEEeCEEEEEecCCcC
Confidence 3456678899999999999998766666665544310 126999999999997543
No 217
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.63 E-value=0.66 Score=43.19 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=41.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|+++++++.|+.++..++.+.|.+.+|. ++.+|.|++|.|.-.+
T Consensus 228 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 228 VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT---------------TELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEcCEEEEeeCCCCC
Confidence 455677889999999999999876666666665552 6899999999998654
No 218
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=91.57 E-value=0.053 Score=49.36 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+++.|++++.++.|+++.++++++. |++.+.. | ..+|.|+.||-|+|- ..|+..+
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-----------g-~~~i~A~~~IDaTG~--g~l~~~a 155 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-----------G-RKEIRAKVFIDATGD--GDLAALA 155 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-----------c-ccccccccccccccc--ccccccc
Confidence 44555778999999999999999887764 5553310 1 337999999999993 3555555
No 219
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.50 E-value=0.63 Score=42.31 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=37.0
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+..++.|++++.+++|++|..++..+.++...+ +.+..+++|++|+|+|..
T Consensus 64 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~------------~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 64 EEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKT------------GSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHCCCeEEecCEEEEEECCCCEEEEEECCC------------CCEEEecCCEEEECCCCC
Confidence 446778999999999999988777676654221 112234499999999974
No 220
>PLN02576 protoporphyrinogen oxidase
Probab=91.48 E-value=0.53 Score=43.45 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHCC-cEEEcCceEEEEEEeCCe-EEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314 8 ENHG-TTFSNNTSVIGGHLEGNC-MNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAG 65 (240)
Q Consensus 8 ~~~G-a~i~~~~~V~~i~~~~~~-~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 65 (240)
++.+ .+|+++++|+.|++.+++ |.|+.. +| +.+++||+||+|.=
T Consensus 247 ~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g--------------~~~~~ad~VI~a~P 294 (496)
T PLN02576 247 KRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEG--------------KVNVTAKAVVMTAP 294 (496)
T ss_pred HhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCC--------------ceeEEeCEEEECCC
Confidence 4456 789999999999988876 766543 33 12699999999985
No 221
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.29 E-value=0.77 Score=42.10 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=38.4
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
..+.|.+++++++|++++..++++.|++.+|. ++++|.|++|+|.-.+
T Consensus 219 ~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 219 IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS---------------TVTADVLLVATGRVPN 266 (452)
T ss_pred HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC---------------EEEcCEEEEeeccCcC
Confidence 34568999999999999877767777766552 6999999999997554
No 222
>PLN02985 squalene monooxygenase
Probab=91.27 E-value=0.81 Score=42.81 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=39.5
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeE-EEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCM-NVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+.|++. |++++.+ .|+++..+++.+ .|+ +++| ++.+++||.||.|.|.+| .+.+.+
T Consensus 152 ~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG-------------~~~~~~AdLVVgADG~~S-~vR~~l 214 (514)
T PLN02985 152 RLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAG-------------EETTALAPLTVVCDGCYS-NLRRSL 214 (514)
T ss_pred HHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCC-------------CEEEEECCEEEECCCCch-HHHHHh
Confidence 456667666 6898864 677776666543 344 3333 234688999999999987 455555
No 223
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.19 E-value=0.67 Score=41.55 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=43.2
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEE-eCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.|.+++.+.|++++++.+++.+.. .++.+.|+.. +|+ +.+++||.||-|-|.+|. +.+.+
T Consensus 108 ~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~-------------~~~i~adlvIGADG~~S~-VR~~l 169 (390)
T TIGR02360 108 DLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE-------------RHRLDCDFIAGCDGFHGV-SRASI 169 (390)
T ss_pred HHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe-------------EEEEEeCEEEECCCCchh-hHHhc
Confidence 356677788999999999888765 3445556553 452 236999999999999884 55555
No 224
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.13 E-value=0.84 Score=38.68 Aligned_cols=57 Identities=16% Similarity=0.043 Sum_probs=38.2
Q ss_pred hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+.++++ |+++++++.|+++...+....++..+. +.+++.++++|.||.|+|.-.+
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~----------~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNT----------VTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEec----------CCCceEEEEccEEEEeeCCCCC
Confidence 34556677 999999999999986543223443221 0123457999999999996543
No 225
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.11 E-value=0.68 Score=45.60 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=43.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~ 75 (240)
+.+..+++|+++++++.|+.|...+....|++++|. ++.+|.||.|+|.-.+. |++.+
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~---------------~i~~D~Vi~a~G~~Pn~~la~~~ 246 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS---------------SLEADLIVMAAGIRPNDELAVSA 246 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCC---------------EEEcCEEEECCCCCcCcHHHHhc
Confidence 445667899999999999998765444457777773 79999999999986543 55544
No 226
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=91.03 E-value=0.44 Score=43.63 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=39.4
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
++..++|+++++|+.|.+...++.+.+.+|. +++||.||+++=+ ..+..++
T Consensus 223 ~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~---------------~~~~D~VI~t~p~--~~l~~ll 273 (444)
T COG1232 223 EKLEAKIRTGTEVTKIDKKGAGKTIVDVGGE---------------KITADGVISTAPL--PELARLL 273 (444)
T ss_pred HHhhhceeecceeeEEEEcCCccEEEEcCCc---------------eEEcceEEEcCCH--HHHHHHc
Confidence 4446779999999999998776776666663 7999999999864 5566666
No 227
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.00 E-value=0.75 Score=41.77 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=41.2
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.+..+++|++++++++|+++.. + .|.+++|+ ++++|.||.|+|.-.+.+.+.+
T Consensus 235 ~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~---------------~i~~d~vi~~~G~~~~~~~~~~ 287 (424)
T PTZ00318 235 QRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGE---------------VIPTGLVVWSTGVGPGPLTKQL 287 (424)
T ss_pred HHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCC---------------EEEccEEEEccCCCCcchhhhc
Confidence 4556789999999999998863 3 35566663 7999999999998777666655
No 228
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=90.95 E-value=0.87 Score=41.91 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=38.7
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|++++++++|+.++.. ++++. +.+.+|+ +.++++|.||+|+|.-.+
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~-------------~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGE-------------EKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCc-------------eEEEEeCEEEEeeCCccC
Confidence 345667889999999999999752 34443 4444441 236999999999998543
No 229
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.63 E-value=0.77 Score=42.24 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=40.6
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+.+..++.|.+++++++|+.++..++++.|+.+++. +.+++||.|++|+|=
T Consensus 220 ~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~-------------~~~~~ad~vLvAiGR 270 (454)
T COG1249 220 LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGE-------------GGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCC-------------CCEEEeeEEEEccCC
Confidence 445566678999999999999988777777777662 116889999999995
No 230
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.55 E-value=0.45 Score=42.76 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=39.5
Q ss_pred HCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 9 NHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 9 ~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+..+++..+|+|.+++.++++ +.+.+.+. ++++.++++.|.||.|+|-.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~----------~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHH----------ETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeec----------cCCCceEEEeeEEEEecccc
Confidence 346899999999999999865 77766554 24667789999999999975
No 231
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=90.54 E-value=0.6 Score=41.23 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=36.1
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+.++++|++++. .+|++|...+. .|++++|. ++++|++|+|+|.-.
T Consensus 61 ~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 61 RRLARQAGARFVI-AEATGIDPDRR--KVLLANRP---------------PLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHhcCCEEEE-EEEEEEecccC--EEEECCCC---------------cccccEEEEccCCCC
Confidence 3456678999986 58999987665 46666663 699999999999754
No 232
>PLN02661 Putative thiazole synthesis
Probab=90.50 E-value=0.99 Score=40.13 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEec------CCcccccCCCCCCC-CCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYIS------ESKNLRNWDGVSPL-QPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~------~g~~~~~~~~~~~~-~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.+.+ .|+++++++.|+++..+++++. |.+. ++. .+. .+...|+|+.||.|+|.-..
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~--------~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHD--------TQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccC--------CCCccceeEEECCEEEEcCCCCCc
Confidence 5555554 6899999999999988877653 4431 110 000 12347999999999996553
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.16 E-value=0.81 Score=45.09 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+..+++|++++.+++|+.|..... .|++.+|. ++++|+||+|+|...
T Consensus 62 ~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~---------------~~~yD~LVlATGs~p 108 (785)
T TIGR02374 62 DWYEKHGITLYTGETVIQIDTDQK--QVITDAGR---------------TLSYDKLILATGSYP 108 (785)
T ss_pred HHHHHCCCEEEcCCeEEEEECCCC--EEEECCCc---------------EeeCCEEEECCCCCc
Confidence 345678999999999999987643 56676663 699999999999753
No 234
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.88 E-value=0.27 Score=44.48 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=47.4
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKR 74 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~ 74 (240)
+-++.-++.|+.++.+..|.++.+..+.+.++.++|. +++.|.||+|.|.--+. |++.
T Consensus 398 wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~---------------~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 398 WTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS---------------ELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred HHHHHHHhcCceeccchhhhhhhhhccceEEEecCCC---------------eeeeeeEEEEecCCCchhhccc
Confidence 4456778889999999999999888777888999984 89999999999976543 4443
No 235
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=89.80 E-value=20 Score=34.58 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=43.6
Q ss_pred hhHHHHHCCc--EEEcCceEEEEEEeCC---eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 3 VQGEAENHGT--TFSNNTSVIGGHLEGN---CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga--~i~~~~~V~~i~~~~~---~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.+.+++.|. +++.+++|++++..++ .++|+..+... ...|++.+++||.||=|=|+.| .+.+.+
T Consensus 147 L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~-------~~~g~~~tv~A~~lVGaDGa~S-~VR~~l 216 (634)
T PRK08294 147 FLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG-------EHEGEEETVRAKYVVGCDGARS-RVRKAI 216 (634)
T ss_pred HHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC-------CCCCceEEEEeCEEEECCCCch-HHHHhc
Confidence 5566777775 7788999999987642 46666543200 0012345899999999999966 566666
No 236
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.44 E-value=1.2 Score=40.05 Aligned_cols=45 Identities=4% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+++|++++.+++|+.+..... .|.+++|. ++++|++|+|+|...
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~---------------~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGE---------------SWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCC--EEEECCCC---------------EEEcCEEEEccCCCC
Confidence 3567999999999999987654 35555552 799999999999865
No 237
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=89.35 E-value=2.1 Score=35.60 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=44.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCC---CCceeEecCEEEEcCCCChHHHHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGLSAPALAK 73 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~wa~~l~~ 73 (240)
.|+..|.+.||+|++.+.|.++...++ ++. |.++ |.-+... =+..+|+|+.||-|+|--+.-..-
T Consensus 114 kl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvN-------Wt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 114 KLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN-------WTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred HHHHHHHhcCceeeecceEEEEEEecCCceEEEEEe-------cchhhhcccccCcceeeEEEEEeCCCCchHHHHH
Confidence 367788899999999999999887776 553 3221 1111111 123469999999999987765433
No 238
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.19 E-value=1.1 Score=41.17 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=41.5
Q ss_pred hHHHHHCC--cEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHG--TTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~G--a~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
...|+..+ ..|+++++|..++..+ +.|+|.+.++. +++.+..+|.||+|+|-+.
T Consensus 97 ~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~-----------~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 97 RDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNG-----------TQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHhcChhhheEecccEEEEeeccCCceeEEEecCC-----------cceeEEEeeEEEEcccCcC
Confidence 34455556 4899999999999888 79999886652 1134677999999999985
No 239
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=89.11 E-value=1.4 Score=43.81 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=44.3
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeC-C-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEG-N-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~ 75 (240)
+.+..+++|+++++++.|++|...+ + ...|++++|. ++++|.||+|+|.-.+. |++.+
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~---------------~i~~D~Vv~A~G~rPn~~L~~~~ 253 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS---------------ELEVDFIVFSTGIRPQDKLATQC 253 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCC---------------EEEcCEEEECCCcccCchHHhhc
Confidence 4566778999999999999997643 2 3457777773 79999999999987654 55544
No 240
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=88.92 E-value=0.56 Score=41.11 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=39.1
Q ss_pred CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH---HHHHHh
Q 026314 11 GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP---ALAKRF 75 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~---~l~~~~ 75 (240)
=++|..+++|++|.+.++++. |.--+. +|+...+.++.||.|+|.++- .+++..
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~-----------sgek~~~~~~~VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMDA-----------SGEKSKIIGDAVVLATGGFGYSDKELLKEY 216 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEcC-----------CCCccceecCceEEecCCcCcChHHHHHHh
Confidence 368999999999998888775 544332 133447899999999998763 355544
No 241
>PLN03000 amine oxidase
Probab=88.90 E-value=0.77 Score=45.48 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=34.0
Q ss_pred EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 13 TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 13 ~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|+++++|+.|...+++|+|++.++ +++||+||+|.=+..
T Consensus 392 ~I~Ln~~Vt~I~~~~dgV~V~~~~~----------------~~~AD~VIvTVPlgV 431 (881)
T PLN03000 392 PILYEKTVQTIRYGSNGVKVIAGNQ----------------VYEGDMVLCTVPLGV 431 (881)
T ss_pred CcccCCcEEEEEECCCeEEEEECCc----------------EEEeceEEEcCCHHH
Confidence 5999999999999888999987654 799999999985543
No 242
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.84 E-value=1.6 Score=40.32 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=39.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+..+++ +++++++.|+.++..++++.|+..++. +++.++++|.||+|+|.-.+
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~-----------~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKK-----------APAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCC-----------CcceEEEeCEEEEeeccccc
Confidence 4445566 999999999999877777766543321 11236999999999998554
No 243
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.83 E-value=1.3 Score=40.02 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=40.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
+.+..+++|++++++++|+++...+ .+ +.+.+|+ ++.+|.||.|+|...+ .+++.+
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~---------------~i~~D~vi~a~G~~p~~~~l~~~ 241 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGG---------------VYQADMVILATGIKPNSELAKDS 241 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCC---------------EEEeCEEEECCCccCCHHHHHhc
Confidence 3456678899999999999997543 33 3444452 7999999999998765 455554
No 244
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=88.78 E-value=0.43 Score=42.21 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHCCcEEEcCceEEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG 65 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 65 (240)
.|++....++.+++|++|+...+ .|+|++.+. .|...++.|+.||+++|
T Consensus 104 va~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~-----------~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 104 VAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS-----------DGDGETYRARNVVLATG 156 (341)
T ss_dssp HHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET-----------TS-EEEEEESEEEE---
T ss_pred HHHhCCCceEECCEEEEEEEecCCCccEEEEEEeec-----------CCCeeEEEeCeEEECcC
Confidence 45666766888999999988764 488888422 12234899999999999
No 245
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=88.72 E-value=0.39 Score=41.04 Aligned_cols=45 Identities=13% Similarity=-0.105 Sum_probs=37.5
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG 65 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 65 (240)
....-.+|.++++|+.|.+.++.|++++++|.+ ...+|.||+|.=
T Consensus 113 ~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~--------------~~~~d~vvla~P 157 (331)
T COG3380 113 FLATDLTVVLETRVTEVARTDNDWTLHTDDGTR--------------HTQFDDVVLAIP 157 (331)
T ss_pred HHhccchhhhhhhhhhheecCCeeEEEecCCCc--------------ccccceEEEecC
Confidence 444577899999999999999999999988743 678999999874
No 246
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.62 E-value=0.59 Score=42.87 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=36.3
Q ss_pred hHHHHHCCc--EEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 4 QGEAENHGT--TFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 4 ~~~A~~~Ga--~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
...+.+.|. +|..++.|+.+..+. +.|.|+++++.. . +++||+||+|+|.+..-
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~------------~-~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT------------G-ELTADFVVVATGHLSEP 146 (443)
T ss_pred HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe------------e-eEecCEEEEeecCCCCC
Confidence 344555664 556666666655544 589999988731 1 27799999999996643
No 247
>PTZ00058 glutathione reductase; Provisional
Probab=88.27 E-value=1.9 Score=40.79 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=38.6
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+.+..+++|+++++++.|++++..++ ++.+...++. .++++|.|++|+|.-.+
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~--------------~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR--------------KYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC--------------EEEECCEEEECcCCCCC
Confidence 44566788999999999999986543 4555443331 16999999999996543
No 248
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.20 E-value=1.6 Score=40.83 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=39.4
Q ss_pred hHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+..++ +|++|+.++.|+.++..++++. |++.++. .+++.+++||.||+|.|.-.+
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~----------~~~~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN----------SGEEKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC----------CCcEEEEEcCEEEEEeCCcCC
Confidence 344444 5999999999999987656554 6654331 122347999999999997553
No 249
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=88.08 E-value=1.4 Score=43.81 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=36.5
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+++|++++.+++|+.|..... .|++++|. ++++|++|+|+|.+.
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~~~~--~V~~~~G~---------------~i~yD~LVIATGs~p 113 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINRQEK--VIHSSAGR---------------TVFYDKLIMATGSYP 113 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeCCCc--EEEECCCc---------------EEECCEEEECCCCCc
Confidence 45678999999999999976533 46676663 699999999999753
No 250
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=87.82 E-value=1.3 Score=41.77 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=37.8
Q ss_pred CC-cEEEcCceEEEEEEeC---CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC-CChHHHHHHh
Q 026314 10 HG-TTFSNNTSVIGGHLEG---NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG-LSAPALAKRF 75 (240)
Q Consensus 10 ~G-a~i~~~~~V~~i~~~~---~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG-~wa~~l~~~~ 75 (240)
.| ++|+.++.|+.|+... ++++ |+..+- ..++.++++|+.||+||| ..+.+|+-+.
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~----------~~g~~~~v~A~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDL----------LSGDRFEIKADVYVLACGAVHNPQILVNS 287 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC----------CCCcEEEEECCEEEEccCchhhHHHHHhC
Confidence 44 9999999999998764 2343 432211 013456799999999996 5566676554
No 251
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=87.70 E-value=0.76 Score=36.52 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=36.1
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeE-----EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCM-----NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~-----~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+...+.+++++.+++|.++....+.+ .+..... ++..++.+|+||+|+|..
T Consensus 65 ~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 65 VDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVET------------GDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEET------------TTEEEEEEEEEEEESTEE
T ss_pred ccccccceEEEeeccccccccccccccccCcccceeecc------------CCceEecCCeeeecCccc
Confidence 344567899999999999998877742 2221111 112389999999999964
No 252
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.52 E-value=2.2 Score=42.81 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=37.5
Q ss_pred hhHHHHHC----CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENH----GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~----Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|.+.++++ ++++++++.++++..+++++. |..-+. ..|+.+.+.|+.||+|+|.+..
T Consensus 145 L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~----------~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 145 LYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNT----------RTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred HHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEec----------CCCcEEEEECCEEEECCCcccc
Confidence 44555544 678888888888877677653 433111 0123557999999999999763
No 253
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=87.28 E-value=2.1 Score=40.38 Aligned_cols=64 Identities=20% Similarity=0.024 Sum_probs=44.0
Q ss_pred hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCC-CceeEecCEEEEcCCCChHH-HHHHh
Q 026314 2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQ-PELTLIPKLVVNSAGLSAPA-LAKRF 75 (240)
Q Consensus 2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~-~~~~i~a~~VV~aaG~wa~~-l~~~~ 75 (240)
++...|.+++ .+|.+++.|+.|..++++++ |+...+. ++ .++.+.++.||+|||.+.+. |+...
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~----------~~~~~~~~a~~~viL~AGai~Sp~LL~~S 274 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGD----------GGTIETAVAAREVVLAAGAINSPKLLLLS 274 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCC----------CCceEEEecCceEEEeccccCCHHHHHhc
Confidence 3455566665 89999999999999998764 4443220 01 24567899999999988644 44443
No 254
>PRK10262 thioredoxin reductase; Provisional
Probab=87.19 E-value=1.5 Score=38.08 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+..++.|+++++++.|+++...++++ .|+..++.. .++..++.+|.||.|.|.-.+.
T Consensus 193 ~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~---------~~~~~~i~~D~vv~a~G~~p~~ 250 (321)
T PRK10262 193 DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPNT 250 (321)
T ss_pred hhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCC---------CCeEEEEECCEEEEEeCCccCh
Confidence 34456799999999999997655443 244433210 0123369999999999986554
No 255
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=87.17 E-value=1.1 Score=40.99 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=41.3
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+...-+++|++|+.++.+.+++... +.+. |.+.+|. ++.||.||.+.|+
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~---------------~l~adlvv~GiG~ 311 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK---------------TLEADLVVVGIGI 311 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC---------------EeccCeEEEeecc
Confidence 4556788999999999999998776 4454 8998884 7999999999997
No 256
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.16 E-value=2.5 Score=38.98 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=44.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEec-----CCcccccCCCCCCCCCceeEecCEEEEcCCCChH--HHHHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-----ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP--ALAKR 74 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~-----~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~--~l~~~ 74 (240)
..+.+++.|++|++++.++.|...+++++ |+.. +|. ..-..+++.++.||.||+|.|.-.+ .+++.
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~------~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~ 408 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGD------FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ 408 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCC------ccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence 35667889999999999999976566653 4332 110 0011244568999999999996543 35443
Q ss_pred h
Q 026314 75 F 75 (240)
Q Consensus 75 ~ 75 (240)
+
T Consensus 409 ~ 409 (471)
T PRK12810 409 F 409 (471)
T ss_pred c
Confidence 3
No 257
>PLN02546 glutathione reductase
Probab=86.99 E-value=2.2 Score=40.37 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=38.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~wa~~ 70 (240)
+.+..+++|+++++++.|+.++..+ +.+.|+++++ ++ .+|.||+|.|.-.+.
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g----------------~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG----------------TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe----------------EEEecCEEEEeeccccCC
Confidence 3456678899999999999997643 4455666555 44 489999999976554
No 258
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=86.71 E-value=3.1 Score=34.52 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=38.9
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|+..|.+.|++|++.+.|.++...+ +++. |.++-..... ..++=+ ..+|+|+.||-|+|.-+.
T Consensus 101 ~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~---~glHvD-Pl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 101 TLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEM---AGLHVD-PLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHT---T--T-B--EEEEESEEEE---SSSS
T ss_pred HHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhH---hhcCCC-cceEEEeEEEeCCCCchH
Confidence 46778888999999999999987776 6664 3321100000 011222 357999999999998763
No 259
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.60 E-value=1.6 Score=42.98 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=32.6
Q ss_pred EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 13 TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 13 ~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|+++++|+.|...+++|.|.+ +|. +++||+||+|.=+..
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V~~-~G~---------------~~~AD~VIvTvPl~v 487 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIVYA-GGQ---------------EFHGDMVLCTVPLGV 487 (808)
T ss_pred CcccCCeeEEEEEcCCeEEEEe-CCe---------------EEEcCEEEECCCHHH
Confidence 4999999999999888888754 442 799999999986544
No 260
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=86.53 E-value=1.4 Score=38.76 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=45.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|.+.-++.|..+..+-+|.+....+++++ |.|..+. ...++||..|+|+|.+-
T Consensus 263 ~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~-------------diP~~a~~~VLAsGsff 317 (421)
T COG3075 263 QLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHA-------------DIPLRADFYVLASGSFF 317 (421)
T ss_pred HHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccc-------------cCCCChhHeeeeccccc
Confidence 467788899999999999999999999997 8887552 34699999999999754
No 261
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.24 E-value=2.1 Score=39.09 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
+.+..+++|++++++++|++++. . .|++++|. ++++|.|+.|+|.-.+ .+++.+
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~---------------~~~~D~vl~a~G~~pn~~~l~~~ 249 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAING--N--EVTFKSGK---------------VEHYDMIIEGVGTHPNSKFIESS 249 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCC---------------EEEeCEEEECcCCCcChHHHHhc
Confidence 45567788999999999999863 2 35555552 6999999999997653 344444
No 262
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=84.35 E-value=39 Score=33.32 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=32.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.|.++|++.|++|+++++|+++.. - .++||.||.|.|.++.
T Consensus 102 ~L~e~a~~~GV~i~~g~~v~~i~~-----------~----------------~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 102 ILQARCEELGVKLVFETEVPDDQA-----------L----------------AADADLVIASDGLNSR 142 (765)
T ss_pred HHHHHHHHcCCEEEeCCccCchhh-----------h----------------hcCCCEEEEcCCCCHH
Confidence 477888899999999998876521 1 3579999999999874
No 263
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.85 E-value=3.8 Score=38.26 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=36.3
Q ss_pred CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 10 HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|++++.++.|++++..++++. |+..+.. .+++.++.+|.|++|.|.-.
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~----------~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRT----------TGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECC----------CCcEEEEEcCEEEEeECCcc
Confidence 5999999999999987656554 5544321 12344799999999999865
No 264
>PLN02976 amine oxidase
Probab=82.48 E-value=2.7 Score=44.03 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=34.1
Q ss_pred CcEEEcCceEEEEEEe----------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 11 GTTFSNNTSVIGGHLE----------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~----------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+..|+++++|+.|... +++|.|+|.+|. ++.||+||+|.=+.
T Consensus 945 ~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe---------------tftADaVIVTVPLG 996 (1713)
T PLN02976 945 GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS---------------EFLGDAVLITVPLG 996 (1713)
T ss_pred hCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC---------------EEEeceEEEeCCHH
Confidence 4469999999999884 357889888873 69999999998654
No 265
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=81.82 E-value=5.9 Score=36.19 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=36.1
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..+++ ++++++++|++++..++ ++.++..+++ +.++++|.||+|.|.-.
T Consensus 217 ~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~-------------~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 217 QKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK-------------TETIEADYVLVATGRRP 268 (460)
T ss_pred HHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc-------------eEEEEeCEEEEccCCcc
Confidence 3445667 99999999999987654 4555433331 22699999999999743
No 266
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=81.77 E-value=5.5 Score=36.52 Aligned_cols=66 Identities=14% Similarity=0.017 Sum_probs=40.6
Q ss_pred hHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecC---Cc---ccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISE---SK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~---g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
.+.+++.|++|++++.++.|... +++++ |+..+ +. .++..+. -..+++.++++|.||.|.|.-.+.
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFL-PCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeee-ecCCceEEEECCEEEECCCCCCCc
Confidence 45678899999999999999764 34453 44321 00 0000000 012345679999999999986543
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=81.27 E-value=3.8 Score=37.19 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=35.5
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+++.|+++. ..+|++|...++.+.+.+.+.. .+..+...++++|++|+|+|.-.
T Consensus 70 ~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~-------~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 70 PALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKS-------NNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHhccCCeEEE-EEEEEEEEcCCCEEEEeccccc-------ccccCCceEecCCEEEECCCccc
Confidence 33555788877 5799999888777766332110 00001112699999999999854
No 268
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=81.24 E-value=4.1 Score=37.35 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=39.5
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCe---EEEEe-------cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNC---MNVYI-------SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~---~~V~t-------~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+.+++.|++|++++.++.|...+++ +.+.. .+|. .. ....+++.++.||.||.|.|.-.+
T Consensus 318 ~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~---~~--~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 318 VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGR---RR--VPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCC---cc--cCCCCceEEEECCEEEECccCCCC
Confidence 45678899999999999999866544 33221 0110 00 000134557999999999997655
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=79.89 E-value=5.4 Score=36.68 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=34.5
Q ss_pred hHHHHHCCcEEEcCceEEEEE--EeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGH--LEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~--~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..++.|++++.+. ++.+. ...+.+.|++++|+ ..++.+|+||+|+|...
T Consensus 99 ~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~-------------~~~~~~d~lViATGs~p 151 (466)
T PRK07845 99 RARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGG-------------EETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCc-------------eEEEecCEEEEcCCCCC
Confidence 345667899998754 44433 34456778776651 12589999999999843
No 270
>PRK12831 putative oxidoreductase; Provisional
Probab=78.40 E-value=7.5 Score=35.81 Aligned_cols=62 Identities=18% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHCCcEEEcCceEEEEEEe-CCeEE-EEec---------CCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.|++.|++|++++.++.+... +++++ |+.. +| +..+. ...+.+.++.||.||.|.|.-.+.
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~G---r~~~~-~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASG---RRRPV-EIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCC---Cccce-ecCCceEEEECCEEEECCCCCCCh
Confidence 4577889999999999998754 34443 3321 11 00000 012445679999999999976543
No 271
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.67 E-value=6.1 Score=34.79 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=39.5
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcc---cc-cCCC-CCCCCCceeEecCEEEEcCCCChHH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKN---LR-NWDG-VSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~---~~-~~~~-~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
.+..+++|+++++++.+++++..+....|+..++.- .+ .++. ....+++.++++|.||+|+|.-.+.
T Consensus 217 ~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 217 IERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 455788999999999999987553322344321100 00 0000 0012334579999999999986544
No 272
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=76.87 E-value=4.9 Score=39.04 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
++++|.+++.+.+|+.|.+... +|+++.|. ++..|.+|+|+|...
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k--~V~t~~g~---------------~~~YDkLilATGS~p 113 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANK--VVTTDAGR---------------TVSYDKLIIATGSYP 113 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcc--eEEccCCc---------------EeecceeEEecCccc
Confidence 5789999999999999987654 57787773 799999999999754
No 273
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=76.83 E-value=4 Score=37.81 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=42.5
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|.+.+++ -+.++++++++.++..+++ .+ .|.+.+.+ ++..++.|+.||+|+|.-.
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~-----------~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRN-----------GELGTFRAKAVVLATGGLG 196 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCC-----------CeEEEEecCeEEEecCCCc
Confidence 46677776 4999999999999988887 55 46664331 1245899999999999855
No 274
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=75.96 E-value=6.9 Score=35.88 Aligned_cols=47 Identities=15% Similarity=0.031 Sum_probs=34.3
Q ss_pred ChhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314 1 MWVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNS 63 (240)
Q Consensus 1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 63 (240)
|++.|.+.-.|+.+..+.+|.+|.... +++. |.+ +|+ ++.|++||..
T Consensus 236 Q~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge---------------~v~~k~vI~d 284 (438)
T PF00996_consen 236 QAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGE---------------VVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTE---------------EEEESEEEEE
T ss_pred HHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCE---------------EEEcCEEEEC
Confidence 578899999999999999999998854 4443 665 442 8999999943
No 275
>PLN02785 Protein HOTHEAD
Probab=74.55 E-value=11 Score=36.05 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=36.4
Q ss_pred HHHHCCcEEEcCceEEEEEEeCC----eEE-EEecCCcccccCCCCCCCCCceeE-----ecCEEEEcCCC-ChHHHHHH
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGN----CMN-VYISESKNLRNWDGVSPLQPELTL-----IPKLVVNSAGL-SAPALAKR 74 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~----~~~-V~t~~g~~~~~~~~~~~~~~~~~i-----~a~~VV~aaG~-wa~~l~~~ 74 (240)
.+...+.+|++++.|++|..+++ +.. |+..+.. |.+.++ .++-||+|||+ .+.+|+..
T Consensus 229 ~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~-----------g~~~~~~~~~~~~~eVILsAGai~sP~lL~~ 297 (587)
T PLN02785 229 AGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDEN-----------GNQHQAFLSNNKGSEIILSAGAIGSPQMLLL 297 (587)
T ss_pred hcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECC-----------CceEEEEeecccCceEEecccccCCHHHHHH
Confidence 44556899999999999987642 443 5543210 112222 24789999987 45555554
Q ss_pred h
Q 026314 75 F 75 (240)
Q Consensus 75 ~ 75 (240)
.
T Consensus 298 S 298 (587)
T PLN02785 298 S 298 (587)
T ss_pred c
Confidence 3
No 276
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.41 E-value=9.9 Score=36.71 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=40.5
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEE---ecCCcc---cccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVY---ISESKN---LRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~---t~~g~~---~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
++.+.+.|++|++++.++.|...++++.++ ...+.. ++-.+. ...++++++.+|.||.|.|.-.+
T Consensus 368 i~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~-~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 368 IEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPV-PVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred HHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcce-ecCCceEEEECCEEEECCCCcCC
Confidence 355677899999999999998766654322 222210 000000 11245667999999999997544
No 277
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=73.43 E-value=8.6 Score=35.35 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=33.1
Q ss_pred HHHHCCcEEEcCceEEEEEEe-----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 6 EAENHGTTFSNNTSVIGGHLE-----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~-----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..++.|++++.+ +++.+... ++.+.|.+.+|. ..++++|+||+|+|...
T Consensus 101 ~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~-------------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 101 LLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGE-------------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCc-------------eEEEEcCEEEEeCCCCC
Confidence 345679999975 45555433 236778776551 12699999999999743
No 278
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=73.39 E-value=5.8 Score=35.32 Aligned_cols=54 Identities=9% Similarity=-0.071 Sum_probs=41.2
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
+.++..+-+|.++++|..|.+--+++.|...+|+ +-..|.||+|+- +++-+.|+
T Consensus 225 ~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~---------------s~rFD~vViAth--~dqAl~mL 278 (447)
T COG2907 225 RLAADIRGRIETRTPVCRLRRLPDGVVLVNADGE---------------SRRFDAVVIATH--PDQALALL 278 (447)
T ss_pred HHhccccceeecCCceeeeeeCCCceEEecCCCC---------------ccccceeeeecC--hHHHHHhc
Confidence 3444455679999999999998888887777774 567899999986 46655665
No 279
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.05 E-value=12 Score=36.15 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.7
Q ss_pred hHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEe---cCCc---ccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYI---SESK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t---~~g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
++.+++.|++|++++.++.|... +++++ |++ ..+. .++..+. ...|+++++++|.||+|.|.-.+
T Consensus 513 ~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~-~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 513 VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPV-PIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcce-eCCCceEEEECCEEEECccCCCC
Confidence 56688899999999999998753 34443 433 1110 0010000 11355678999999999997543
No 280
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=72.71 E-value=14 Score=34.10 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=39.6
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEe---cCCc---ccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYI---SESK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t---~~g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
++.+++.|++|++++.++.|...+ ++++ |+. ..+. +++-.+. ...+++.++.||.||+|.|.-.+
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~-~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPV-PVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccce-ecCCceEEEECCEEEECCcCCCC
Confidence 456778999999999999997543 4442 332 1110 0000000 01245668999999999996543
No 281
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=72.32 E-value=8.6 Score=35.11 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=30.2
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+..++.|++++.+ +++.+. .+.+.|.+ +|. ++++|+||+|+|..
T Consensus 97 ~~~l~~~gV~~~~g-~~~~v~--~~~v~v~~-~g~---------------~~~~d~lIiATGs~ 141 (446)
T TIGR01424 97 KRLLANAGVELLEG-RARLVG--PNTVEVLQ-DGT---------------TYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHhCCcEEEEE-EEEEec--CCEEEEec-CCe---------------EEEcCEEEEecCCc
Confidence 34466789999865 665553 23455543 331 69999999999964
No 282
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=71.58 E-value=11 Score=36.50 Aligned_cols=62 Identities=8% Similarity=-0.105 Sum_probs=36.2
Q ss_pred HHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+++|++|++++.|+.|+..++. +.|+..+....+.....-..++..++++|.|++|+|.-.+
T Consensus 365 ~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 365 KSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred hcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 4689999999999999876543 5554322100000000000011236999999999997543
No 283
>PRK13984 putative oxidoreductase; Provisional
Probab=71.00 E-value=12 Score=35.54 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCC-----cccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMN-VYISES-----KNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g-----~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+.+.|++|++++.++.+...+++++ |+..+. .+++..+ .-..+++.++++|.||+|.|.-.
T Consensus 470 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~-~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 470 EEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNP-KFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccc-eecCCceEEEECCEEEEeeCCCC
Confidence 445678999999999988876566553 433210 0000000 00123456799999999999764
No 284
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=70.94 E-value=14 Score=34.90 Aligned_cols=63 Identities=19% Similarity=0.071 Sum_probs=39.6
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeE-EE---EecCC---cccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCM-NV---YISES---KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V---~t~~g---~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+.+.+.|++|++++.++.|...+++. .| +...+ .+++..|. .++++++++|.||.|.|.-.+
T Consensus 312 ~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~---~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 312 IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPV---TGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeec---CCceEEEECCEEEECcCCCCc
Confidence 456778899999999999997654432 12 11111 00011111 356678999999999997554
No 285
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.04 E-value=11 Score=34.70 Aligned_cols=46 Identities=20% Similarity=0.082 Sum_probs=30.7
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+++.|++++.++ ++. ...+.+.|++++|+ +.++++|+||+|+|..
T Consensus 102 ~~~~~gV~~~~g~-a~~--~~~~~v~v~~~~g~-------------~~~~~~d~lViATGs~ 147 (471)
T PRK06467 102 MAKGRKVTVVNGL-GKF--TGGNTLEVTGEDGK-------------TTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHHhCCCEEEEEE-EEE--ccCCEEEEecCCCc-------------eEEEEcCEEEEeCCCC
Confidence 4566799999764 322 23455677765541 2369999999999973
No 286
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=69.44 E-value=14 Score=37.50 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=40.8
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
+.+..+++|+++++++.|+.+...+....|+.. ++ +..+++||.|+++.|.-.+ +|+..+
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g-------------~~~~i~~D~V~va~G~~Pnt~L~~~l 419 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGG-------------AGQRLEADALAVSGGWTPVVHLFSQR 419 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCC-------------ceEEEECCEEEEcCCcCchhHHHHhc
Confidence 455678899999999999998754432223332 12 1237999999999997654 366555
No 287
>PLN02507 glutathione reductase
Probab=68.40 E-value=17 Score=33.79 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
..++.|++++.+ +++.+ ....+.|++++|. +.++++|+||+|+|..
T Consensus 133 ~l~~~gV~~i~g-~a~~v--d~~~v~V~~~~g~-------------~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 133 LLANAGVKLYEG-EGKIV--GPNEVEVTQLDGT-------------KLRYTAKHILIATGSR 178 (499)
T ss_pred HHHhCCcEEEEE-EEEEe--cCCEEEEEeCCCc-------------EEEEEcCEEEEecCCC
Confidence 345578888864 44443 3346778776652 2358999999999974
No 288
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=67.39 E-value=21 Score=31.83 Aligned_cols=60 Identities=22% Similarity=0.181 Sum_probs=39.2
Q ss_pred hHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCC------CCCCCCceeEecCEEEEcCCC
Q 026314 4 QGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDG------VSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 4 ~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~------~~~~~~~~~i~a~~VV~aaG~ 66 (240)
++++++.| ++|++..+|..+...+++++ |.- ..++.-++ .-.....++++|..||+++|.
T Consensus 159 ~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~G---dVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGG 226 (552)
T COG3573 159 LREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRG---DVLEPSDVERGQPSSREVVGDFEFSASAVIVASGG 226 (552)
T ss_pred HHHHHhCCceEEEeeeeccceEeeCCeEeeecc---cccCCCccccCCCccceeecceEEeeeeEEEecCC
Confidence 46666676 79999999999999998765 431 11111111 111123567899999999975
No 289
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=67.28 E-value=20 Score=31.48 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=43.2
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEE---EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN---VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKR 74 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~---V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~ 74 (240)
+.+..+++|++++.++++.+|+...+... +.+..+. .+.+|.++++.|...+ .++..
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~~~~d~~~~~~g~~p~~~l~~~ 244 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE---------------EIKADLVIIGPGERPNVVLAND 244 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc---------------EEEeeEEEEeecccccHHHHhh
Confidence 45667889999999999999988766433 4555552 7999999999999884 44443
No 290
>PRK14694 putative mercuric reductase; Provisional
Probab=66.08 E-value=19 Score=33.11 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=29.5
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
|++++.+ +|+.+. .+.++|++.+|+ +.++++|+||+|+|..
T Consensus 111 ~v~~~~g-~v~~id--~~~~~V~~~~g~-------------~~~~~~d~lViATGs~ 151 (468)
T PRK14694 111 AITVLNG-EARFVD--ERTLTVTLNDGG-------------EQTVHFDRAFIGTGAR 151 (468)
T ss_pred CeEEEEE-EEEEec--CCEEEEEecCCC-------------eEEEECCEEEEeCCCC
Confidence 7788864 566663 456788876652 2369999999999973
No 291
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.87 E-value=20 Score=34.55 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHCCcEEEcCceEEEEEEe-CCeEE-EE---ecCCc---ccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VY---ISESK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~---t~~g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+++.|++|++++.++.|... +++++ |+ +..+. .++..|. -..+++++++||.||+|.|.-.
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~-~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPR-PVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccce-ecCCceEEEECCEEEECcCCCC
Confidence 4577889999999999999754 34443 32 22110 0010000 0124567899999999999543
No 292
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=65.68 E-value=14 Score=33.09 Aligned_cols=47 Identities=21% Similarity=0.109 Sum_probs=30.6
Q ss_pred HHHCCcEEEcCceEEEE-EEeCCe---EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 7 AENHGTTFSNNTSVIGG-HLEGNC---MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i-~~~~~~---~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
.++-||++ .+++|++| .+.++. +.|+...+. .+..-..|.||+|+=.
T Consensus 135 l~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~------------~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 135 LEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSS------------GTESDEYDIVVIATPL 185 (368)
T ss_pred HHHccCcE-ecceeEEEEeccCCCceeEEEEEecCC------------CCccccCCEEEECCCc
Confidence 45679999 79999999 444443 456544331 1113346999999976
No 293
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=65.29 E-value=21 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+..+++|++++.+. ++.+ ..+.+.|.+.+|. ..++++|+||+|+|..
T Consensus 102 ~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~-------------~~~~~~d~lviATGs~ 148 (461)
T PRK05249 102 GQYERNRVDLIQGR-ARFV--DPHTVEVECPDGE-------------VETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHCCCEEEEEE-EEEe--cCCEEEEEeCCCc-------------eEEEEcCEEEEcCCCC
Confidence 34567899998764 3333 3345777765551 2369999999999963
No 294
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=64.60 E-value=8.6 Score=35.22 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=25.9
Q ss_pred CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+|++++.++.+.. +..+|++.+|. ++++|+||+|+|..
T Consensus 105 ~gv~~~~g~~~~~-----~~~~V~~~~g~---------------~~~~d~lIiATGs~ 142 (452)
T TIGR03452 105 PNIDVYDGHARFV-----GPRTLRTGDGE---------------EITGDQIVIAAGSR 142 (452)
T ss_pred CCeEEEEEEEEEe-----cCCEEEECCCc---------------EEEeCEEEEEECCC
Confidence 6888887765433 22345555552 68999999999974
No 295
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=63.30 E-value=7.4 Score=37.84 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=45.6
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 75 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~ 75 (240)
.|.+.-.++|.+++++..++.|...+....|..++|. .+.||.||.|+|.-=+. |+...
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~---------------~i~ad~VV~a~GIrPn~ela~~a 251 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGT---------------EIPADLVVMAVGIRPNDELAKEA 251 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcCcceeeEeecCCC---------------cccceeEEEecccccccHhHHhc
Confidence 3667778899999999998888763333358999984 79999999999986543 56655
No 296
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=63.18 E-value=19 Score=32.97 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
...++.|++++.++ ++.+ +...+.|.+.++. .++++|+||+|+|...
T Consensus 100 ~~~~~~gv~~~~g~-~~~~--~~~~~~v~~~~~~--------------~~~~~d~lViAtGs~p 146 (462)
T PRK06416 100 GLLKKNKVDIIRGE-AKLV--DPNTVRVMTEDGE--------------QTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHhCCCEEEEEE-EEEc--cCCEEEEecCCCc--------------EEEEeCEEEEeCCCCC
Confidence 34567899998764 4332 3345666643331 1799999999999754
No 297
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=62.05 E-value=27 Score=34.37 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecC---C---cccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISE---S---KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~---g---~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+++.|++|++++.++.+...+ +.++ |++.. + ..++..+. ...++++++.||.||.|.|.-.+.
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~-~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPV-AIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCce-ecCCCeEEEECCEEEECcCCCCCc
Confidence 46788999999999999987543 4443 43320 0 00010111 112456689999999999975543
No 298
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=61.92 E-value=32 Score=34.85 Aligned_cols=66 Identities=14% Similarity=0.037 Sum_probs=41.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeC-C-eEE-EEec---CC---cccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEG-N-CMN-VYIS---ES---KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 71 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~-V~t~---~g---~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l 71 (240)
.+.|.+.|++|++++.++.|...+ + .++ |++. -+ ..++..+. ..|++.++.||.||+|.|--.+..
T Consensus 491 ~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~--~~G~e~~i~aD~VI~AiG~~p~~~ 565 (944)
T PRK12779 491 LHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPK--PTGEIERVPVDLVIMALGNTANPI 565 (944)
T ss_pred HHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeee--cCCceEEEECCEEEEcCCcCCChh
Confidence 345678899999999999997653 2 342 3221 00 00010011 135667899999999999876654
No 299
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=60.17 E-value=20 Score=32.97 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=29.5
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+..|++++.+ +++.+.+.++.++|++..+. ..++++|+||+|+|...
T Consensus 109 ~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~-------------~~~~~~d~lViATGs~p 157 (475)
T PRK06327 109 LFKKNKITVLKG-RGSFVGKTDAGYEIKVTGED-------------ETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHhCCCEEEEE-EEEEecCCCCCCEEEEecCC-------------CeEEEeCEEEEeCCCCC
Confidence 345568888854 44445444444555443210 01699999999999743
No 300
>PRK09897 hypothetical protein; Provisional
Probab=59.10 E-value=28 Score=32.87 Aligned_cols=47 Identities=4% Similarity=-0.009 Sum_probs=32.2
Q ss_pred hHHHHHCCc-EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 4 QGEAENHGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 4 ~~~A~~~Ga-~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+.++.+.|. +|....+=..++..+++..+.++++ ....+.||||+|-
T Consensus 398 l~~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~a~G~ 445 (534)
T PRK09897 398 LLALREAGIIHILALGEDYEMEINESRTVIKTEDN----------------SYSFDVFIDARGQ 445 (534)
T ss_pred HHHHHHcCCEEEEecCccceeEecCCeEEEEeCCC----------------ceEeCEEEECCCC
Confidence 345566675 5554433234476777778888754 7999999999996
No 301
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=58.22 E-value=18 Score=32.83 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=34.5
Q ss_pred hHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+.+++.+ ++|. ..+|++|..+..+ |+++++. ++..|.+|+|.|.-..
T Consensus 64 ~~~~~~~~~v~~~-~~~V~~ID~~~k~--V~~~~~~---------------~i~YD~LVvalGs~~~ 112 (405)
T COG1252 64 RALLRKSGNVQFV-QGEVTDIDRDAKK--VTLADLG---------------EISYDYLVVALGSETN 112 (405)
T ss_pred HHHhcccCceEEE-EEEEEEEcccCCE--EEeCCCc---------------cccccEEEEecCCcCC
Confidence 34455455 7877 4899999887764 4555531 7999999999998653
No 302
>PTZ00367 squalene epoxidase; Provisional
Probab=58.12 E-value=20 Score=34.01 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.2
Q ss_pred eeEecCEEEEcCCCChHHHHHHh
Q 026314 53 LTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 53 ~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
.+++||.||.|=|.+| .+.+.+
T Consensus 204 ~~~~AdLvVgADG~~S-~vR~~l 225 (567)
T PTZ00367 204 KVATAPLVVMCDGGMS-KFKSRY 225 (567)
T ss_pred eEEEeCEEEECCCcch-HHHHHc
Confidence 4799999999999866 455555
No 303
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=58.01 E-value=55 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEe
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLE 26 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~ 26 (240)
|++-.+++||+|+++++|++|...
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEE
Confidence 466778999999999999999875
No 304
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=57.47 E-value=6.4 Score=37.03 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=33.3
Q ss_pred CcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 11 GTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+-.++ +.+|+++..+++ ++. |.|.+|. .+.|+.||+++|-+..
T Consensus 115 NL~l~-q~~v~dli~e~~~~v~GV~t~~G~---------------~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 115 NLHLL-QGEVEDLIVEEGQRVVGVVTADGP---------------EFHAKAVVLTTGTFLR 159 (621)
T ss_pred Cceeh-HhhhHHHhhcCCCeEEEEEeCCCC---------------eeecCEEEEeeccccc
Confidence 55666 467888887666 454 9999884 7999999999998753
No 305
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=56.96 E-value=1.6e+02 Score=27.23 Aligned_cols=91 Identities=12% Similarity=0.189 Sum_probs=55.1
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCC--CC----ceeEecCEEEEcCCCC---hHH
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPL--QP----ELTLIPKLVVNSAGLS---APA 70 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~--~~----~~~i~a~~VV~aaG~w---a~~ 70 (240)
||.+.|++.|++|.-++.+..+....+ .++ |.|+|-. ...++ ++ -.+++|+.-|.|-|.. +.+
T Consensus 188 wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~G------I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 188 WLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVG------ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccc------ccCCCCccccccccceecceeEEEeccccchhHHH
Confidence 788999999999999999988877654 454 6664431 00111 12 2358999999987765 445
Q ss_pred HHHHhcCCCCccCCCceee-ceeEEEEcCC
Q 026314 71 LAKRFIGLDNVFIPPAYYA-RGCYFSLANT 99 (240)
Q Consensus 71 l~~~~~~~~~~~~p~~~~~-~g~~~~~~~~ 99 (240)
+.+.. +++-.-.|+.|-. --..|.+++.
T Consensus 262 i~kkf-~Lr~n~e~qtYglGlKEvWei~~~ 290 (621)
T KOG2415|consen 262 IIKKF-DLRENCEPQTYGLGLKEVWEIDPE 290 (621)
T ss_pred HHHHh-CcccCCCcceeccccceeEecChh
Confidence 55555 3443344533321 2245666543
No 306
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=56.95 E-value=25 Score=35.85 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=37.7
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEE---ecC-CcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVY---ISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~---t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+.|.+.|++|+.++.++.|.. ++++.+. ... ...++..+ ...+++.++.||.||.|.|.-.+
T Consensus 714 le~AleeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~--v~tg~~~~I~aD~VIvAIG~~Pn 780 (1019)
T PRK09853 714 YEEALEDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRP--VETGETVTLEADTVITAIGEQVD 780 (1019)
T ss_pred HHHHHHcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEE--eeCCCeEEEEeCEEEECCCCcCC
Confidence 3456678999999999999864 3433221 100 00001001 12245668999999999998654
No 307
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=56.81 E-value=7.3 Score=34.29 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=32.3
Q ss_pred hHHHHHCCcEEEcCceEEEEEE----eCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHL----EGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~----~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+...++|++++.++.|..+.. .++.+...+...+ +..+++|.||+|+|.|..
T Consensus 75 ~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~d~lviAtGs~~~ 131 (352)
T PRK12770 75 VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-------------ELVKKYDAVLIATGTWKS 131 (352)
T ss_pred HHHHHhCCeEEecCcEEeeccccccccccccccccCCHH-------------HHHhhCCEEEEEeCCCCC
Confidence 4456677999999998876532 1222221111110 114789999999998643
No 308
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.26 E-value=18 Score=33.47 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=31.0
Q ss_pred EEEcCceEEEEEEe--CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 13 TFSNNTSVIGGHLE--GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 13 ~i~~~~~V~~i~~~--~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
-.+.+++++++.+. ++++.+++.+|. +..||.+|+|+|.-.
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~---------------~~~ad~~Vlatgh~~ 164 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGP---------------SEIADIIVLATGHSA 164 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCC---------------eeeeeEEEEeccCCC
Confidence 45557888888877 456778888883 678999999997543
No 309
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=55.25 E-value=44 Score=34.18 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=40.6
Q ss_pred HHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecC---C---cccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISE---S---KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~---g---~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+++.|++|++++.++.|... +++++ |+..+ + ..++-.|. ..+++.+++||.||+|.|--.+.
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~--~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPM--PTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCcccc--CCCceEEEEcCEEEECCCcCCCh
Confidence 5678899999999999998754 34443 43321 0 00011111 12455679999999999986553
No 310
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=54.99 E-value=12 Score=35.53 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=39.1
Q ss_pred hhhHHHHH-CCcEEEcCceEEEEEEeCCe-EE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNC-MN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~-~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|.+++.+ .+.+|+.+..|+++..++++ +. |..-+- ..++.+.+.|+.||+|+|...
T Consensus 143 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~----------~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 143 TLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDL----------RTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEe----------cCCcEEEEecCcEEEccCCce
Confidence 46667777 67799999999999877543 32 322111 012345688999999999877
No 311
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=54.26 E-value=46 Score=34.01 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=40.6
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEe---c-CCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYI---S-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 75 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t---~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~ 75 (240)
.+.+.+.|++|++++.++.|. ++++.+.. . ....++.. ....|++.++.||.||.|.|.-.+ .+++.+
T Consensus 712 l~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~--~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~ 784 (1012)
T TIGR03315 712 LEEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRR--PVGTGETVDLPADTVIAAVGEQVDTDLLQKN 784 (1012)
T ss_pred HHHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCcee--eecCCCeEEEEeCEEEEecCCcCChHHHHhc
Confidence 345667899999999888886 44443221 0 00000100 112356678999999999997643 344444
No 312
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=54.05 E-value=24 Score=30.98 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
.+.+..++.+++|+.+..... .|.+.++ ++..|.+|+|+|.+...
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~--~v~~~~g----------------~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENK--VVLLDDG----------------EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCC--EEEECCC----------------cccccEEEEcCCCcccC
Confidence 467899999999999987655 4566666 69999999999987655
No 313
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=53.83 E-value=40 Score=31.01 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=26.9
Q ss_pred HCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 9 NHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 9 ~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.|++++.+. ..|. ...++.|.+++|. +.++++|+||+|+|...
T Consensus 105 ~~~v~~~~g~--a~~~-~~~~v~v~~~~g~-------------~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 105 KNKVDWIKGW--GRLD-GVGKVVVKAEDGS-------------ETQLEAKDIVIATGSEP 148 (466)
T ss_pred hCCCEEEEEE--EEEc-cCCEEEEEcCCCc-------------eEEEEeCEEEEeCCCCC
Confidence 3466666543 1222 2345666665541 23699999999999854
No 314
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=52.87 E-value=28 Score=32.18 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
++.|-+++++++|+++..... +|.+.+|+ ++..+++++|+|.
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge---------------~~kys~LilATGs 179 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASK--TLVLGNGE---------------TLKYSKLIIATGS 179 (478)
T ss_pred hhcCceEEEcceeEEeecccc--EEEeCCCc---------------eeecceEEEeecC
Confidence 567999999999999987665 45566663 7999999999998
No 315
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.82 E-value=37 Score=30.79 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=28.6
Q ss_pred CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.|++++.+ +++.+ ..+.+.|.+.++. .++.+|+||+|+|...
T Consensus 90 ~gv~~~~g-~~~~i--~~~~~~v~~~~g~--------------~~~~~d~lviATGs~p 131 (441)
T PRK08010 90 PNIDVIDG-QAEFI--NNHSLRVHRPEGN--------------LEIHGEKIFINTGAQT 131 (441)
T ss_pred CCcEEEEE-EEEEe--cCCEEEEEeCCCe--------------EEEEeCEEEEcCCCcC
Confidence 48888754 45444 2356777776651 2589999999999743
No 316
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=52.05 E-value=17 Score=33.66 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.4
Q ss_pred cEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 12 TTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 12 a~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
-+++.+++|..|.-.+ +.++|+.++|+ .++||+||++.=...
T Consensus 244 ~~~~~~~rv~~I~~~~~~~v~l~c~dg~---------------v~~adhVIvTvsLGv 286 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNTGEVKLRCSDGE---------------VFHADHVIVTVSLGV 286 (498)
T ss_pred hhhcccccceeeccCCCCcEEEEEeCCc---------------EEeccEEEEEeechh
Confidence 4667789999998775 56889998884 799999999985443
No 317
>PRK06116 glutathione reductase; Validated
Probab=51.94 E-value=30 Score=31.55 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
..++.|++++.++ ++.+. .. +|++ ++. ++++|+||+|+|..
T Consensus 102 ~l~~~gv~~~~g~-~~~v~--~~--~v~~-~g~---------------~~~~d~lViATGs~ 142 (450)
T PRK06116 102 GLENNGVDLIEGF-ARFVD--AH--TVEV-NGE---------------RYTADHILIATGGR 142 (450)
T ss_pred HHHhCCCEEEEEE-EEEcc--CC--EEEE-CCE---------------EEEeCEEEEecCCC
Confidence 3456799998764 54442 23 3444 342 79999999999964
No 318
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=51.71 E-value=43 Score=30.52 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.++.|++++.+..+ .+ ....+.|.+.++. .++++|+||+|+|..
T Consensus 99 ~~~~~v~~~~g~~~-~~--~~~~~~v~~~~g~--------------~~~~~d~lVlAtG~~ 142 (461)
T TIGR01350 99 LKKNKVTVIKGEAK-FL--DPGTVLVTGENGE--------------ETLTAKNIIIATGSR 142 (461)
T ss_pred HHhCCCEEEEEEEE-Ec--cCCEEEEecCCCc--------------EEEEeCEEEEcCCCC
Confidence 34567787765432 22 3445667665541 269999999999974
No 319
>PRK07846 mycothione reductase; Reviewed
Probab=51.13 E-value=26 Score=32.07 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
.+++|++++.+.... + ... +|++.+|. ++++|+||+|+|.
T Consensus 99 ~~~~~v~~~~g~a~~-~--~~~--~V~v~~g~---------------~~~~d~lViATGs 138 (451)
T PRK07846 99 RDTPNIDVYRGHARF-I--GPK--TLRTGDGE---------------EITADQVVIAAGS 138 (451)
T ss_pred hhhCCcEEEEEEEEE-e--cCC--EEEECCCC---------------EEEeCEEEEcCCC
Confidence 445677777654332 2 222 35555552 6999999999996
No 320
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=50.30 E-value=34 Score=31.26 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
...+++|++++.++.+. . .++. |+.+ +. .+++|+||+|+|..
T Consensus 99 ~~l~~~gv~~~~g~~~~--~-~~~~--v~v~-~~---------------~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 99 KNLEKNKVDVIFGHARF--T-KDGT--VEVN-GR---------------DYTAPHILIATGGK 140 (450)
T ss_pred HHHHhCCCEEEEEEEEE--c-cCCE--EEEC-CE---------------EEEeCEEEEecCCC
Confidence 44566799999887652 1 2333 3333 31 69999999999963
No 321
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=49.20 E-value=47 Score=30.68 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=24.8
Q ss_pred CCCCEEEEeCC--CCchHhhhHHHHHHHHHHHhC
Q 026314 209 GVPGLVNLFGI--ESPGLTSSMAIAEYVAAKFLR 240 (240)
Q Consensus 209 ~~~~~~~~~G~--~~~G~t~ap~~g~~va~~i~~ 240 (240)
..+|||++.+. .|.|+..+..-|+.+|+.|++
T Consensus 457 ~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 457 AIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 47899877443 456898888999999998763
No 322
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=47.54 E-value=55 Score=29.94 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=27.2
Q ss_pred HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
++.|++++.+. +..+ ....+.|+++++ +.++++|+||+|+|...
T Consensus 101 ~~~~v~~~~g~-a~~~--~~~~v~v~~~~~--------------~~~~~~d~lviATGs~p 144 (458)
T PRK06912 101 KKNKIKVIQGK-ASFE--TDHRVRVEYGDK--------------EEVVDAEQFIIAAGSEP 144 (458)
T ss_pred hhCCcEEEEEE-EEEc--cCCEEEEeeCCC--------------cEEEECCEEEEeCCCCC
Confidence 44577776533 3222 344566765444 12699999999999853
No 323
>PRK14727 putative mercuric reductase; Provisional
Probab=46.92 E-value=57 Score=30.05 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=25.2
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
|++++.+. . .+ ...+.+.|.+.+|+ +.++++|+||+|+|.
T Consensus 121 ~v~~i~G~-a-~f-~~~~~v~v~~~~g~-------------~~~~~~d~lViATGs 160 (479)
T PRK14727 121 ALTLLKGY-A-RF-KDGNTLVVRLHDGG-------------ERVLAADRCLIATGS 160 (479)
T ss_pred CeEEEEEE-E-EE-ecCCEEEEEeCCCc-------------eEEEEeCEEEEecCC
Confidence 56665533 1 12 23456777765551 236999999999997
No 324
>PRK06370 mercuric reductase; Validated
Probab=46.63 E-value=33 Score=31.39 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=25.9
Q ss_pred HHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 7 AENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 7 A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+++ |++++.++.+. .....+ +.+ +. ++++|+||+|+|..
T Consensus 104 ~~~~~gv~v~~g~~~~---~~~~~v--~v~-~~---------------~~~~d~lViATGs~ 144 (463)
T PRK06370 104 LRGLEGVDVFRGHARF---ESPNTV--RVG-GE---------------TLRAKRIFINTGAR 144 (463)
T ss_pred HhcCCCcEEEEEEEEE---ccCCEE--EEC-cE---------------EEEeCEEEEcCCCC
Confidence 4455 88888877652 223333 333 31 68999999999974
No 325
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=45.18 E-value=56 Score=33.36 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCc-----ccccCCC----------CCCCCCceeEecCEEEEcCCC
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESK-----NLRNWDG----------VSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~-----~~~~~~~----------~~~~~~~~~i~a~~VV~aaG~ 66 (240)
++.|.+.|++|.+++.-..|..+. ++++ |+...-. ..-.|.. ..-.+++++|.||.||+|+|-
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 467899999999999998887643 4443 4332100 0001111 011146788999999999995
Q ss_pred C
Q 026314 67 S 67 (240)
Q Consensus 67 w 67 (240)
-
T Consensus 727 ~ 727 (1028)
T PRK06567 727 E 727 (1028)
T ss_pred C
Confidence 3
No 326
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=44.61 E-value=15 Score=33.60 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=28.4
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..++.|+++++++.|.. .+++++. .+.+|.||+|+|.+.
T Consensus 197 ~~~l~~~gv~~~~~~~v~~--------~v~~~~~----------------~~~~d~vvlAtGa~~ 237 (457)
T PRK11749 197 VERLLKLGVEIRTNTEVGR--------DITLDEL----------------RAGYDAVFIGTGAGL 237 (457)
T ss_pred HHHHHHcCCEEEeCCEECC--------ccCHHHH----------------HhhCCEEEEccCCCC
Confidence 3456778999998887621 1333333 477999999999974
No 327
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=44.60 E-value=32 Score=31.62 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=37.2
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
+.+-|+.+..+..|+.|..++. .|+.++|. +|..|...+|+|.--..
T Consensus 267 ~~nGGvAvl~G~kvvkid~~d~--~V~LnDG~---------------~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 267 AVNGGVAVLRGRKVVKIDEEDK--KVILNDGT---------------TIGYDKCLIATGVRPKK 313 (659)
T ss_pred cccCceEEEeccceEEeecccC--eEEecCCc---------------EeehhheeeecCcCccc
Confidence 4456889999999999987766 35667784 79999999999985433
No 328
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=28 Score=31.21 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=39.7
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
|-+..++.-+++..-.++++++.. ++-..|++++|. .+.++.||+++|+.-+
T Consensus 272 le~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGa---------------vLkaktvIlstGArWR 326 (520)
T COG3634 272 LEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGA---------------VLKARTVILATGARWR 326 (520)
T ss_pred HHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCc---------------eeccceEEEecCcchh
Confidence 344456667888888888888875 445779998884 7999999999998543
No 329
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=43.81 E-value=68 Score=29.05 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+.|++++.++. .. ..+..+.|+..++ ..++++|+||+|+|...
T Consensus 86 ~~~~gV~~~~g~~-~~--~~~~~v~v~~~~~--------------~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 86 LAGSGVDLYDAEA-HF--VSNKVIEVQAGDE--------------KIELTAETIVINTGAVS 130 (438)
T ss_pred HHhCCCEEEEEEE-EE--ccCCEEEEeeCCC--------------cEEEEcCEEEEeCCCCC
Confidence 3556888776542 22 1334455554222 12699999999999853
No 330
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.13 E-value=12 Score=34.17 Aligned_cols=41 Identities=22% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+..+++|++|+.++.|. ..|++++. ...+|.||+|+|.+..
T Consensus 191 ~~l~~~gv~~~~~~~v~--------~~v~~~~~----------------~~~yd~viiAtGa~~p 231 (449)
T TIGR01316 191 KTLKKLGVTFRMNFLVG--------KTATLEEL----------------FSQYDAVFIGTGAGLP 231 (449)
T ss_pred HHHHhCCcEEEeCCccC--------CcCCHHHH----------------HhhCCEEEEeCCCCCC
Confidence 45667899999887551 23444433 3568999999998643
No 331
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.87 E-value=42 Score=30.58 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=32.2
Q ss_pred HHHHCCcEEEcCceEEEEEEeCC--eEE--EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGN--CMN--VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~--~~~--V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
+|.++ -.++++++|+.|...++ ... +.|.++. .++|+.||+..|.
T Consensus 107 aa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~---------------~y~ar~lVlg~G~ 155 (436)
T COG3486 107 AASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGT---------------VYRARNLVLGVGT 155 (436)
T ss_pred HHhhC-CccccCCeeccccccCCcceeEEEEEcCCCc---------------EEEeeeEEEccCC
Confidence 34555 88999999998844432 333 5665552 7999999999985
No 332
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.78 E-value=25 Score=35.64 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=30.1
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
++..++.|++|++++.|- ..+++++.. ...+|.||+|+|+|..
T Consensus 363 i~~l~~~Gv~f~~n~~vG--------~dit~~~l~---------------~~~yDAV~LAtGA~~p 405 (944)
T PRK12779 363 VEKIKLLGGRFVKNFVVG--------KTATLEDLK---------------AAGFWKIFVGTGAGLP 405 (944)
T ss_pred HHHHHhhcCeEEEeEEec--------cEEeHHHhc---------------cccCCEEEEeCCCCCC
Confidence 456678899999887652 135555441 3568999999999853
No 333
>PRK13748 putative mercuric reductase; Provisional
Probab=41.76 E-value=81 Score=29.59 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=27.0
Q ss_pred CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
|++++.+ +++.+ ....+.|++.+|+ +.++++|+||+|+|..
T Consensus 203 ~v~~~~g-~~~~~--~~~~~~v~~~~g~-------------~~~~~~d~lviAtGs~ 243 (561)
T PRK13748 203 AITVLHG-EARFK--DDQTLIVRLNDGG-------------ERVVAFDRCLIATGAS 243 (561)
T ss_pred CeEEEEE-EEEEe--cCCEEEEEeCCCc-------------eEEEEcCEEEEcCCCC
Confidence 6777764 44432 3345667765541 2369999999999974
No 334
>PRK12831 putative oxidoreductase; Provisional
Probab=39.79 E-value=19 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.++++|++|++++.|.. .|+.++.. ..+.+|.||+|+|.|.
T Consensus 199 ~~~~~~gv~i~~~~~v~~--------~v~~~~~~--------------~~~~~d~viiAtGa~~ 240 (464)
T PRK12831 199 ENIKKLGVKIETNVVVGK--------TVTIDELL--------------EEEGFDAVFIGSGAGL 240 (464)
T ss_pred HHHHHcCCEEEcCCEECC--------cCCHHHHH--------------hccCCCEEEEeCCCCC
Confidence 456778999999986621 12222220 0467999999999863
No 335
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.25 E-value=59 Score=29.22 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=38.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEe-cCEEEEcCCCC
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLI-PKLVVNSAGLS 67 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~-a~~VV~aaG~w 67 (240)
.+.....|.+++.++.++.+.+.+++ ..+.+..+ ++. .|.|+-|.|--
T Consensus 237 ~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~----------------~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 237 TEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG----------------TIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHhhhcceeecccccceeeeecCCCceEEEEecc----------------ccccccEEEEEecCC
Confidence 45566789999999999999988765 45667666 555 89999999853
No 336
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.38 E-value=1.1e+02 Score=28.76 Aligned_cols=52 Identities=10% Similarity=-0.012 Sum_probs=32.2
Q ss_pred HHHHH-CCcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCcee--EecCE----EEEcCCCChHH
Q 026314 5 GEAEN-HGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELT--LIPKL----VVNSAGLSAPA 70 (240)
Q Consensus 5 ~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~--i~a~~----VV~aaG~wa~~ 70 (240)
+.+.+ +|+++++++.|+.+...+ ++. +. +.+| ++.+ +.||. ||+|+|.-.+.
T Consensus 186 ~~~~~~~gV~i~~~~~V~~i~~~~-~v~~v~~~~~~~G-------------~~~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 186 EKVKNHPKIEVKFNTELKEATGDD-GLRYAKFVNNVTG-------------EITEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred HHHHhCCCcEEEeCCEEEEEEcCC-cEEEEEEEECCCC-------------CEEEEeccccccceEEEEEeCCCCCh
Confidence 33433 599999999999997433 332 22 2223 2223 34676 99999986544
No 337
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=35.66 E-value=3.5e+02 Score=24.84 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=39.0
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHH
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 72 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~ 72 (240)
.|-+.|.+. ++++.+ -.|+++..+++-++ |+.+.. .|++.+..|-.-|+|=|.+++.=-
T Consensus 152 ~lR~ka~slpNV~~ee-GtV~sLlee~gvvkGV~yk~k-----------~gee~~~~ApLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 152 RLRKKAASLPNVRLEE-GTVKSLLEEEGVVKGVTYKNK-----------EGEEVEAFAPLTVVCDGCFSNLRR 212 (509)
T ss_pred HHHHHHhcCCCeEEee-eeHHHHHhccCeEEeEEEecC-----------CCceEEEecceEEEecchhHHHHH
Confidence 345555555 788775 45777776766554 555433 134567889999999999886533
No 338
>PLN02546 glutathione reductase
Probab=34.91 E-value=74 Score=30.18 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=26.9
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
+.+..++.|++++.+ +++.+. ... |++ +|. .+++|+||+|+|.-
T Consensus 184 ~~~~l~~~gV~~i~G-~a~~vd--~~~--V~v-~G~---------------~~~~D~LVIATGs~ 227 (558)
T PLN02546 184 YKNILKNAGVTLIEG-RGKIVD--PHT--VDV-DGK---------------LYTARNILIAVGGR 227 (558)
T ss_pred HHHHHHhCCcEEEEe-EEEEcc--CCE--EEE-CCE---------------EEECCEEEEeCCCC
Confidence 334456778888864 333332 222 333 342 68999999999964
No 339
>PTZ00058 glutathione reductase; Provisional
Probab=34.67 E-value=73 Score=30.26 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=12.1
Q ss_pred eEecCEEEEcCCC
Q 026314 54 TLIPKLVVNSAGL 66 (240)
Q Consensus 54 ~i~a~~VV~aaG~ 66 (240)
++++|+||+|+|.
T Consensus 200 ~i~ad~lVIATGS 212 (561)
T PTZ00058 200 VIEGKNILIAVGN 212 (561)
T ss_pred EEECCEEEEecCC
Confidence 6999999999996
No 340
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=34.65 E-value=1.1e+02 Score=31.27 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=31.9
Q ss_pred hHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 4 QGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 4 ~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
.+++++. +++++.+++|.++.. ++.+. +...... ..........+...++.+|.||+|+|..
T Consensus 222 ~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~-~~~~~~~~~~~~~~~i~a~~VILATGa~ 285 (985)
T TIGR01372 222 VAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDH-LDAPPKGVPRERLWRIRAKRVVLATGAH 285 (985)
T ss_pred HHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeec-cccccCCccccceEEEEcCEEEEcCCCC
Confidence 3444445 599999999998754 22221 2111000 0000000000112268999999999984
No 341
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.57 E-value=76 Score=29.74 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=32.8
Q ss_pred CcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 11 GTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 11 Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
|-.|+.+..|..|...++. +.++++.+. .+++|.||+++=..
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~---------------~~~~d~vvvt~pl~ 270 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGD---------------GYEADAVVVTVPLG 270 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCC---------------eeEeeEEEEEccHH
Confidence 8899999999999988765 445555552 49999999998653
No 342
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=34.37 E-value=77 Score=29.23 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCCCEEEEeCC--CCchHhhhHHHHHHHHHHHhC
Q 026314 209 GVPGLVNLFGI--ESPGLTSSMAIAEYVAAKFLR 240 (240)
Q Consensus 209 ~~~~~~~~~G~--~~~G~t~ap~~g~~va~~i~~ 240 (240)
..+|||++... .|.|+..+..-|+.+|+.|++
T Consensus 457 ~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 457 KIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred CCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 47899876443 356898888899999998763
No 343
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=34.20 E-value=58 Score=30.56 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC----hHHHHHHh
Q 026314 7 AENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS----APALAKRF 75 (240)
Q Consensus 7 A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w----a~~l~~~~ 75 (240)
-.+.|++|.. -++..|.... ++..|..++.. .|.-.++++|.||+++|.- +..+++++
T Consensus 425 Q~~~gV~fIR-Grvaei~e~p~~~l~V~~EdTl----------~g~~~e~~~DLVVLa~Gmep~~g~~kia~iL 487 (622)
T COG1148 425 QEDYGVRFIR-GRVAEIAEFPKKKLIVRVEDTL----------TGEVKEIEADLVVLATGMEPSEGAKKIAKIL 487 (622)
T ss_pred hhhhchhhhc-CChHHheeCCCCeeEEEEEecc----------CccceecccceEEEeeccccCcchHHHHHhc
Confidence 3477888885 4555555544 45456554431 1344579999999999964 45777777
No 344
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=34.15 E-value=1.1e+02 Score=28.32 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 66 (240)
..++.|++++.+.-. +. ....+.|+..++ .+.++++|+||+|+|.
T Consensus 109 ~~~~~~v~~i~G~a~--f~-~~~~v~v~~~~g-------------~~~~~~~d~lVIATGs 153 (484)
T TIGR01438 109 ALREKKVNYENAYAE--FV-DKHRIKATNKKG-------------KEKIYSAERFLIATGE 153 (484)
T ss_pred HHhhCCcEEEEEEEE--Ec-CCCEEEEeccCC-------------CceEEEeCEEEEecCC
Confidence 445668877764331 21 233455654333 1236999999999997
No 345
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=33.97 E-value=82 Score=28.74 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=26.7
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
...++.|++++.++.+ .+ +.. +|+++++. ..+++|+||+|+|..
T Consensus 96 ~~l~~~gv~~~~g~~~-~~--~~~--~v~v~~g~--------------~~~~~~~lIiATGs~ 139 (463)
T TIGR02053 96 DVLSSYGVDYLRGRAR-FK--DPK--TVKVDLGR--------------EVRGAKRFLIATGAR 139 (463)
T ss_pred HHHHhCCcEEEEEEEE-Ec--cCC--EEEEcCCe--------------EEEEeCEEEEcCCCC
Confidence 3456678888865432 21 222 34444431 158899999999974
No 346
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.82 E-value=25 Score=32.38 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=29.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+.++++|++++.+++|.. .+..++. ...+|.||+|+|.+..
T Consensus 198 ~~~~~~~Gv~~~~~~~v~~--------~~~~~~~----------------~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 198 REIFTAMGIEFHLNCEVGR--------DISLDDL----------------LEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHCCCEEECCCEeCC--------ccCHHHH----------------HhcCCEEEEEeCCCCC
Confidence 4567888999999987732 1222221 3568999999999864
No 347
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=30.78 E-value=28 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=28.4
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..+++|++|++++.|. . .|+.++.. ...+|.||+|+|+|.
T Consensus 488 ~~~l~~~gv~~~~~~~v~------~--~v~~~~l~---------------~~~ydavvlAtGa~~ 529 (752)
T PRK12778 488 IENLKKLGVKFETDVIVG------K--TITIEELE---------------EEGFKGIFIASGAGL 529 (752)
T ss_pred HHHHHHCCCEEECCCEEC------C--cCCHHHHh---------------hcCCCEEEEeCCCCC
Confidence 345678899999987651 1 23333321 466899999999974
No 348
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.75 E-value=84 Score=28.77 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=13.2
Q ss_pred eEecCEEEEcCCCCh
Q 026314 54 TLIPKLVVNSAGLSA 68 (240)
Q Consensus 54 ~i~a~~VV~aaG~wa 68 (240)
++++|+||+|+|...
T Consensus 133 ~~~~d~lViATGs~p 147 (466)
T PRK07818 133 TVTFDNAIIATGSST 147 (466)
T ss_pred EEEcCEEEEeCCCCC
Confidence 699999999999754
No 349
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=30.63 E-value=1.5e+02 Score=27.50 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=13.6
Q ss_pred eeEecCEEEEcCCCCh
Q 026314 53 LTLIPKLVVNSAGLSA 68 (240)
Q Consensus 53 ~~i~a~~VV~aaG~wa 68 (240)
.++++|+||+|+|...
T Consensus 148 ~~~~~d~lIIATGs~p 163 (486)
T TIGR01423 148 ERLQAEHILLATGSWP 163 (486)
T ss_pred eEEECCEEEEecCCCC
Confidence 3799999999999853
No 350
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=30.62 E-value=30 Score=25.82 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=27.7
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+|-.+|+++|..|+ ++.+|. ++. .-|++. .-.||.||+|+..-.
T Consensus 23 aLe~~A~~~g~~IK-------VETqGs~G~eN~LT~ed----------------I~~Ad~VI~AaD~~i 68 (122)
T COG1445 23 ALEKAAKKLGVEIK-------VETQGAVGIENRLTAED----------------IAAADVVILAADIEV 68 (122)
T ss_pred HHHHHHHHcCCeEE-------EEcCCcccccCcCCHHH----------------HHhCCEEEEEecccc
Confidence 46677888888776 455553 332 223322 467999999998633
No 351
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=29.70 E-value=77 Score=32.46 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=27.2
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
+..++.|++|+.++.| .+ +.++.. ...+|.||+|+|++..
T Consensus 597 e~l~~~GVe~~~gt~V-di---------~le~L~---------------~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 597 EFVKAHGVKFEFGCSP-DL---------TVEQLK---------------NEGYDYVVVAIGADKN 636 (1019)
T ss_pred HHHHHcCCEEEeCcee-EE---------Ehhhhe---------------eccCCEEEECcCCCCC
Confidence 4566789999999877 22 112221 3558999999999853
No 352
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=27.76 E-value=1.4e+02 Score=27.70 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=29.3
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w 67 (240)
....+++|++++.+.-- |. ..+.+.|... + +.+++|+++|+|+|..
T Consensus 101 ~~l~~~~~V~vi~G~a~--f~-~~~~v~V~~~-~--------------~~~~~a~~iiIATGS~ 146 (454)
T COG1249 101 EGLLKKNGVDVIRGEAR--FV-DPHTVEVTGE-D--------------KETITADNIIIATGSR 146 (454)
T ss_pred HHHHhhCCCEEEEEEEE--EC-CCCEEEEcCC-C--------------ceEEEeCEEEEcCCCC
Confidence 34556678888765322 22 2455666554 2 1289999999999974
No 353
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=27.42 E-value=1.3e+02 Score=27.36 Aligned_cols=58 Identities=14% Similarity=-0.047 Sum_probs=41.0
Q ss_pred ChhhHHHHHCCcEEEcCceEEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 1 MWVQGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 1 ~al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
|.++|.+.=.|+++..|.++..|... ++.+ .|+..++ ...++ -|+|-..+..+-.+..
T Consensus 236 QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~----------------v~~~k-~vi~dpSY~~~~~k~v 295 (440)
T KOG1439|consen 236 QGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE----------------VAKCK-KVICDPSYFPQKVKKV 295 (440)
T ss_pred HHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc----------------eeecc-eEEecCccchHHHHhh
Confidence 56788888889999999999999874 4333 4665444 55666 5667777776655555
No 354
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=27.19 E-value=28 Score=30.82 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.6
Q ss_pred eEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 19 SVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 19 ~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
.|+.+..+.+ +|.|.+|+ +|+.|++|+|+|...+.
T Consensus 113 kv~~f~P~~N--~v~t~gg~---------------eIsYdylviA~Giql~y 147 (446)
T KOG3851|consen 113 KVKEFNPDKN--TVVTRGGE---------------EISYDYLVIAMGIQLDY 147 (446)
T ss_pred HHHhcCCCcC--eEEccCCc---------------EEeeeeEeeeeeceecc
Confidence 3444444333 46677774 89999999999998754
No 355
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=26.72 E-value=38 Score=31.42 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
+.++++|+++++++.|.. .++. +. ....+|.||+|+|.+.
T Consensus 201 ~~~~~~Gv~~~~~~~v~~--------~~~~-~~---------------~~~~~d~VilAtGa~~ 240 (485)
T TIGR01317 201 DLLSAEGIDFVTNTEIGV--------DISA-DE---------------LKEQFDAVVLAGGATK 240 (485)
T ss_pred HHHHhCCCEEECCCEeCC--------ccCH-HH---------------HHhhCCEEEEccCCCC
Confidence 456778999999888741 1111 11 1356899999999984
No 356
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=26.19 E-value=38 Score=34.64 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=28.5
Q ss_pred hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314 3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 70 (240)
Q Consensus 3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~ 70 (240)
..+..+++|++|++++.| +..+++.+-.. ...+|.||+|+|.|...
T Consensus 486 ~~~~l~~~Gv~~~~~~~v------g~~~~~~~l~~----------------~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 486 EVQRLVDIGVKIETNKVI------GKTFTVPQLMN----------------DKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred HHHHHHHCCCEEEeCCcc------CCccCHHHHhh----------------ccCCCEEEEecCCCCCC
Confidence 345677889999998754 11122211111 24579999999997533
No 357
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.34 E-value=2.7e+02 Score=24.18 Aligned_cols=55 Identities=16% Similarity=0.005 Sum_probs=39.0
Q ss_pred hhhHHHHHC-CcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314 2 WVQGEAENH-GTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 69 (240)
Q Consensus 2 al~~~A~~~-Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~ 69 (240)
.+++.++++ .++++.+++++.+.-++ .. |+..+.. +++..+.++.|+++.|.-.+
T Consensus 183 ~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~--v~l~~~~-----------~~~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 183 ILVERLKKNVKIEVLTNTVVKEILGDDVEG--VVLKNVK-----------GEEKELPVDGVFIAIGHLPN 239 (305)
T ss_pred HHHHHHHhcCCeEEEeCCceeEEecCccce--EEEEecC-----------CceEEEEeceEEEecCCCCc
Confidence 356777777 89999999999987655 23 3333320 23457999999999997655
No 358
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=25.29 E-value=1.4e+02 Score=18.82 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=19.0
Q ss_pred hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEE
Q 026314 2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVY 33 (240)
Q Consensus 2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~ 33 (240)
+|++.|.+.||..+. ++++...++.|.++
T Consensus 23 ~la~kAd~~GA~~y~---I~~~~~~~~~~~~t 51 (56)
T PF07338_consen 23 ALAKKADEKGAKYYR---ITSASEDGNNWHAT 51 (56)
T ss_dssp HHHHHHHHTT-SEEE---EEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCCEEE---EEEEEcCCCeEEEE
Confidence 578899999998775 55544345666544
No 359
>PRK13984 putative oxidoreductase; Provisional
Probab=24.68 E-value=39 Score=32.18 Aligned_cols=41 Identities=22% Similarity=0.130 Sum_probs=28.0
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..+++|++++.++.|.. .++.++. ...+|.||+|+|.+.
T Consensus 340 ~~~~~~~gv~~~~~~~v~~--------~~~~~~~----------------~~~yD~vilAtGa~~ 380 (604)
T PRK13984 340 IAFIEALGVKIHLNTRVGK--------DIPLEEL----------------REKHDAVFLSTGFTL 380 (604)
T ss_pred HHHHHHCCcEEECCCEeCC--------cCCHHHH----------------HhcCCEEEEEcCcCC
Confidence 3456778999999988732 1222222 457999999999874
No 360
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=24.08 E-value=70 Score=29.14 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314 18 TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 75 (240)
Q Consensus 18 ~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~ 75 (240)
..+..++..+....|++++|. ++++|.+|=|=|+|| .+.+.+
T Consensus 128 ~~~~~~~~~~~~~~v~l~~g~---------------~~~~dlligCDGa~S-~Vr~~l 169 (420)
T KOG2614|consen 128 SKDVEIETLGKKLVVHLSDGT---------------TVKGDLLIGCDGAYS-KVRKWL 169 (420)
T ss_pred cccceeeecccccceecCCCc---------------EEEeeEEEEcCchHH-HHHHHh
Confidence 355556666655668888773 799999999999987 455555
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=24.03 E-value=41 Score=32.49 Aligned_cols=41 Identities=17% Similarity=0.107 Sum_probs=26.8
Q ss_pred hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
.+..+++|++++.++.|. +.++.++. ...+|.||+|+|.+.
T Consensus 250 ~~~l~~~Gv~i~~~~~v~--------~dv~~~~~----------------~~~~DaVilAtGa~~ 290 (652)
T PRK12814 250 IAPLRAMGAEFRFNTVFG--------RDITLEEL----------------QKEFDAVLLAVGAQK 290 (652)
T ss_pred HHHHHHcCCEEEeCCccc--------CccCHHHH----------------HhhcCEEEEEcCCCC
Confidence 455677899998887651 11223222 245899999999875
No 362
>PTZ00052 thioredoxin reductase; Provisional
Probab=23.20 E-value=2.2e+02 Score=26.42 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=12.5
Q ss_pred eEecCEEEEcCCCC
Q 026314 54 TLIPKLVVNSAGLS 67 (240)
Q Consensus 54 ~i~a~~VV~aaG~w 67 (240)
.+++|+||+|+|..
T Consensus 142 ~i~~d~lIIATGs~ 155 (499)
T PTZ00052 142 TITAKYILIATGGR 155 (499)
T ss_pred EEECCEEEEecCCC
Confidence 69999999999974
No 363
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=22.43 E-value=64 Score=28.48 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=11.9
Q ss_pred CCCCceeEecCEEEEcCCC
Q 026314 48 PLQPELTLIPKLVVNSAGL 66 (240)
Q Consensus 48 ~~~~~~~i~a~~VV~aaG~ 66 (240)
+.+++.++++|.||.|+|-
T Consensus 321 ~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 321 QTGEEETLEVDAVILATGY 339 (341)
T ss_dssp TT--EEEEEESEEEE---E
T ss_pred CCCCeEEEecCEEEEcCCc
Confidence 4577888999999999994
No 364
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=22.10 E-value=2.3e+02 Score=26.03 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=28.5
Q ss_pred HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314 6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 68 (240)
Q Consensus 6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa 68 (240)
..+++++++..++- +| .....+++...+|+ .+.|+|+.+|+|+|.-.
T Consensus 139 lfkknkV~~~kG~g--sf-~~p~~V~v~k~dg~-------------~~ii~aKnIiiATGSeV 185 (506)
T KOG1335|consen 139 LFKKNKVTYVKGFG--SF-LDPNKVSVKKIDGE-------------DQIIKAKNIIIATGSEV 185 (506)
T ss_pred HhhhcCeEEEeeeE--ee-cCCceEEEeccCCC-------------ceEEeeeeEEEEeCCcc
Confidence 34555665554422 12 12245667766663 45899999999999733
No 365
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=21.96 E-value=1.9e+02 Score=19.31 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCCeEEecCCCCCCCCE-EEEeCCCCchHhhhHHHHHHHHHH
Q 026314 196 SPIDFVIQGDDTHGVPGL-VNLFGIESPGLTSSMAIAEYVAAK 237 (240)
Q Consensus 196 ~~~~~ii~~~~~~~~~~~-~~~~G~~~~G~t~ap~~g~~va~~ 237 (240)
+++.+.|.-..+ .-... +.++|.+-..+.++..+.++++++
T Consensus 23 ~~~smtvrl~d~-~sg~~~l~vtGI~~~~l~s~rdI~~LI~eL 64 (69)
T PF07865_consen 23 PDGSMTVRLFDP-ASGRVELTVTGISTSALNSSRDIVRLIAEL 64 (69)
T ss_pred CCCcEEEEEecC-CCCcEEEEEcCcCHHHcCCHHHHHHHHHHH
Confidence 455665433221 12334 789999999999999999999886
No 366
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.74 E-value=41 Score=19.73 Aligned_cols=20 Identities=10% Similarity=0.534 Sum_probs=15.4
Q ss_pred HHHHHHHhhhCCCCCCCCcc
Q 026314 161 ERFYPEIRKYYPDLRDGSLQ 180 (240)
Q Consensus 161 ~~~~~~~~~~~P~l~~~~i~ 180 (240)
+..++.++++||.+....|.
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~ 22 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIK 22 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHH
Confidence 45677888999999876653
No 367
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=20.62 E-value=90 Score=28.82 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=12.8
Q ss_pred eEecCEEEEcCCCCh
Q 026314 54 TLIPKLVVNSAGLSA 68 (240)
Q Consensus 54 ~i~a~~VV~aaG~wa 68 (240)
++.+|.||.|+|.-.
T Consensus 274 ~~~~D~Ii~~TGy~~ 288 (461)
T PLN02172 274 VVYADTIVHCTGYKY 288 (461)
T ss_pred CccCCEEEECCcCCc
Confidence 588999999999743
No 368
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=20.19 E-value=3.6e+02 Score=24.95 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCceeEecCEEEEcCCCC
Q 026314 50 QPELTLIPKLVVNSAGLS 67 (240)
Q Consensus 50 ~~~~~i~a~~VV~aaG~w 67 (240)
+++++++||.||.|.|.-
T Consensus 396 g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 396 GSEEVFEADLVLLAMGFV 413 (485)
T ss_pred CceEEEECCEEEEccCcC
Confidence 456689999999999963
Done!