BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026315
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 150/236 (63%), Positives = 178/236 (75%), Gaps = 6/236 (2%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
MFD +L++RN+ CPA+GFYTYDAFI AA++FP FG +G+ +RKREIAAF QT HETT
Sbjct: 10 MFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFLGQTSHETT 69
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCX 116
GGWP AP G YAWGYCF+ E +P S+YC P YPC GK YYGRGPIQLSWNYNY C
Sbjct: 70 GGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPIQLSWNYNYGPCG 129
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPDL+ATD V+SFK+A+WFWMT Q PKPSCH+VI W+PSA D AGR
Sbjct: 130 EALRVNLL--GNPDLVATDRVISFKTALWFWMTPQAPKPSCHDVITGRWQPSAADTAAGR 187
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 232
LPGYG+ TNIINGG+ECG+G N V +RIGFF +CG G+ G++LDCYNQRP+G
Sbjct: 188 LPGYGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGTGNNLDCYNQRPFG 243
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 164/235 (69%), Gaps = 6/235 (2%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
FD +L +RND C A+GFYTYDAF+ AA AFPGFG +G+ RKR++AAF AQT HETT
Sbjct: 11 QFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETT 70
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCX 116
GGW AP G +AWGYCF E +DYC P+ +PC +YYGRGPIQLS NYNY
Sbjct: 71 GGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GP 128
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI +W PS D AGR
Sbjct: 129 AGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGR 188
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
PG+G+ TNIINGG+ECG G ++ V +RIGF+ +C G+ GD+LDCYNQRP+
Sbjct: 189 APGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 243
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 169/235 (71%), Gaps = 7/235 (2%)
Query: 2 FDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 61
F +L++ ND C A GF+TYDAFI AA++FP FGN+G+ MRK+EIAAFF QT HETTG
Sbjct: 11 FYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETTG 70
Query: 62 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCX 116
GW AP G WGYC+ E+ +CD N +PC GK YYGRGP+ LSWNYNY C
Sbjct: 71 GWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCG 130
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPD+ ++DPV++FK+AIWFWMT Q PKPSCH+VI D+W+PSA D++AGR
Sbjct: 131 RDLGLELL--KNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGR 188
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
LPGYG+ TNIINGG+EC A V++RI F+T +CG FG+ PG ++DC NQRP+
Sbjct: 189 LPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPF 243
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 169/235 (71%), Gaps = 7/235 (2%)
Query: 2 FDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 61
F +L++ ND C A GF+TYDAFI AA++FP FGN+G+ MRK+EIAAFF QT HETTG
Sbjct: 14 FYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETTG 73
Query: 62 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCX 116
GW AP G WGYC+ E+ +CD N +PC GK YYGRGP+ LSWNYNY C
Sbjct: 74 GWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCG 133
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPD+ ++DPV++FK+AIWFWMT Q PKPSCH+VI D+W+PSA D++AGR
Sbjct: 134 RDLGLELL--KNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGR 191
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
LPGYG+ TNIINGG+EC A V++RI F+T +CG FG+ PG ++DC NQRP+
Sbjct: 192 LPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPF 246
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 168/235 (71%), Gaps = 7/235 (2%)
Query: 2 FDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 61
F +L++ ND C A GF+TYDAFI AA++FP FGN+G+ MRK+EIAAFF QT HETTG
Sbjct: 13 FYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETTG 72
Query: 62 GWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCX 116
GW AP G WGYC+ + +CD N +PC GK YYGRGP+ LSWNYNY C
Sbjct: 73 GWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPCG 132
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPD+ ++DPV++FK+AIWFWMT Q PKPSCH+VI D+W+PSA D++AGR
Sbjct: 133 RDLGLELL--KNPDVASSDPVIAFKTAIWFWMTPQAPKPSCHDVITDQWEPSAADISAGR 190
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
LPGYG+ TNIINGG+EC A V++RI F+T +CG FG+ PG ++DC NQRP+
Sbjct: 191 LPGYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGVDPGSNIDCDNQRPF 245
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 266 bits (680), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 130/234 (55%), Positives = 165/234 (70%), Gaps = 4/234 (1%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
+FD LL++RND C +GFY+Y+AF+ AA++F GFG +G+ RKRE+AAF AQT HETT
Sbjct: 10 LFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFLAQTSHETT 69
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPC-RGK-YYGRGPIQLSWNYNYLRCXXX 118
GG +P G YAWGYCF++E + YCDP PC GK YYGRGPIQL+ NYNY +
Sbjct: 70 GGAAGSPDGPYAWGYCFVTERDKSNKYCDPGTPCPAGKSYYGRGPIQLTHNYNYAQAGRA 129
Query: 119 XXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLP 178
NNPDL+A D V+SFK+AIWFWMT Q KPSCH+VI + W PSA DV A R P
Sbjct: 130 LGVDLI--NNPDLVARDAVISFKTAIWFWMTPQGNKPSCHDVITNRWTPSAADVAANRTP 187
Query: 179 GYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 232
G+G+ TNIINGGIECG+G + A +RIGF+ +C + G +L+C +QRP+G
Sbjct: 188 GFGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHLSYGPNLNCRDQRPFG 241
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 265 bits (677), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/234 (53%), Positives = 163/234 (69%), Gaps = 4/234 (1%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
+FD LL++RND+ C +GFY+Y+AFI AA++F FG +G+ RKRE+AAF AQT HETT
Sbjct: 11 LFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFLAQTSHETT 70
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRG--KYYGRGPIQLSWNYNYLRCXXX 118
GG +P G YAWGYCF++E + YCD + PC YYGRGPIQL+ NYNY
Sbjct: 71 GGAATSPDGPYAWGYCFVTERDKSNRYCDGSGPCSAGKSYYGRGPIQLTHNYNY--NAAG 128
Query: 119 XXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLP 178
NNPDL+A D V+SFK+A+WFWMT Q KPSCH+VI + W PSA D A R+P
Sbjct: 129 RALGVDLINNPDLVARDAVVSFKTALWFWMTPQGNKPSCHDVITNRWTPSAADKAANRVP 188
Query: 179 GYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYG 232
G+G+ TNIINGG+ECG+G A +RIGF+ +C FG+ G +L+C +QRP+G
Sbjct: 189 GFGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLNCRDQRPFG 242
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 166/235 (70%), Gaps = 6/235 (2%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
FD +L +RND C A+GFYTYDAF+ AA AF GFG +G+ ++KRE+AAF AQT HETT
Sbjct: 10 QFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAFLAQTSHETT 69
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCX 116
GGW AP G +AWGYCF E SDYC P+ +PC +YYGRGPIQLS NYNY
Sbjct: 70 GGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GP 127
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPDL+ATD +SFK+A+WFWMTAQPPKPS H VI+ +W PS D AGR
Sbjct: 128 AGRAIGVDLLANPDLVATDATVSFKTAMWFWMTAQPPKPSSHAVIVGQWSPSGADRAAGR 187
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
+PG+G+ TNIINGGIECG G ++ V +RIGF+ +C G+ G++LDCY+QRP+
Sbjct: 188 VPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 242
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 262 bits (670), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 164/235 (69%), Gaps = 6/235 (2%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
FD +L +RND C A+GFYTYDAF+ AA AFPGFG +G+ +KRE+AAF AQT HETT
Sbjct: 10 QFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETT 69
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCX 116
GGW AP G +AWGYCF E SDYC P+ +PC +YYGRGPIQLS NYNY
Sbjct: 70 GGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GP 127
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
NPDL+ATD + FK+AIWFWMTAQPPKPS H VI +W PS D AGR
Sbjct: 128 AGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGR 187
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
+PG+G+ TNIINGGIECG G ++ V +RIGF+ +C G+ G++LDCY+QRP+
Sbjct: 188 VPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 242
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 261 bits (667), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 167/235 (71%), Gaps = 6/235 (2%)
Query: 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETT 60
+F+ LL +RND CPARGFYTY+AF+ AA AFP FG +GN RKRE+AAF QT HETT
Sbjct: 66 LFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETT 125
Query: 61 GGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR--GKYYGRGPIQLSWNYNYLRCX 116
GGWP AP G ++WGYCF E +PPSDYC P+ +PC KYYGRGPIQLS+N+NY
Sbjct: 126 GGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYG--P 183
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGR 176
+NPDL+ATD +SFK+A+WFWMT Q KPS H+VI W PS D AGR
Sbjct: 184 AGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGR 243
Query: 177 LPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 231
PGYG+ TNI+NGG+ECG G + V NRIGF+ +CG FGI G +LDCYNQRP+
Sbjct: 244 APGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 298
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 115/218 (52%), Gaps = 37/218 (16%)
Query: 12 ERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEY 71
C +GFYTY+AFI AA A+ GFG +G+ ++KRE+AAFFA HET
Sbjct: 20 SSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFFANVMHETG----------- 68
Query: 72 AWGYCFISEVSPPSDYCDPN--YPC-RGK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXN 127
G C+I+E +PP +YC + +PC GK Y+GRGP+QLSWNYNY N
Sbjct: 69 --GLCYINEKNPPINYCQSSSTWPCTSGKSYHGRGPLQLSWNYNY--GAAGKSIGFDGLN 124
Query: 128 NPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNII 187
NP+ + D +SFK+A+WFWM +CH I G+G T I
Sbjct: 125 NPEKVGQDSTISFKTAVWFWM----KNSNCHSAITSG-------------QGFGGTIKAI 167
Query: 188 NGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225
N +EC G + V +R+ ++ C + G+ PG ++ C
Sbjct: 168 N-SMECNGGNSGEVSSRVNYYKKICSQLGVDPGANVSC 204
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 109/226 (48%), Gaps = 33/226 (14%)
Query: 7 EYRNDERCPAR-GFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPD 65
E + D+ P+R FYTY A A+PGF N+G++T++K+E AAF A GHET G
Sbjct: 5 EAQFDQMFPSRNSFYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGG---- 60
Query: 66 APGGEYAWGYCFISEVSPPSDYCDPNYP-----CRGKYYGRGPIQLSWNYNYLRCXXXXX 120
Y + YCD + P KYYGRGP+QLSWN+NY
Sbjct: 61 -------LVYVVEQNTANYPHYCDASQPYGCPAGNDKYYGRGPVQLSWNFNYKAA--GDA 111
Query: 121 XXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSC-HEVIIDEWKPSANDVNAGRLPG 179
NNPDL+ D +++K+ +W+W T P H+ +++ G
Sbjct: 112 LGIDLLNNPDLVQNDSAVAWKTGLWYWNTQTGPGTMTPHDAMVNG-------------AG 158
Query: 180 YGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225
+G T ING +EC G V++RI + F G++PG +L C
Sbjct: 159 FGETIRSINGSLECDGGNPGQVQSRIDNYERFTQLLGVEPGGNLSC 204
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 37/230 (16%)
Query: 5 LLEYRNDERCPAR-GFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 63
+ E + ++ P R FYTY +A A+P F +G++ ++KRE AAF A HET
Sbjct: 64 VSEAQFNQMFPNRNAFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETG--- 120
Query: 64 PDAPGGEYAWGYCFISEVSPPS--DYCDP--NYPC---RGKYYGRGPIQLSWNYNYLRCX 116
G +I EV+ + YCD +Y C + YYGRGPIQLSWN+NY
Sbjct: 121 ----------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAG 170
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSC-HEVIIDEWKPSANDVNAG 175
NP L+ DP +++K+ +W+W + P H I++
Sbjct: 171 DALGINLLA--NPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNN----------- 217
Query: 176 RLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225
G+G T ING +EC G A V++RI FT F G G +L C
Sbjct: 218 --AGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 108/230 (46%), Gaps = 37/230 (16%)
Query: 5 LLEYRNDERCPAR-GFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 63
+ E + ++ P R FYTY +A A+P F +G++ ++KRE AAF A H+T
Sbjct: 64 VSEAQFNQMFPNRNAFYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTG--- 120
Query: 64 PDAPGGEYAWGYCFISEVSPPS--DYCDP--NYPC---RGKYYGRGPIQLSWNYNYLRCX 116
G +I EV+ + YCD +Y C + YYGRGPIQLSWN+NY
Sbjct: 121 ----------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAG 170
Query: 117 XXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSC-HEVIIDEWKPSANDVNAG 175
NP L+ DP +++K+ +W+W + P H I++
Sbjct: 171 DALGINLLA--NPYLVEQDPAVAWKTGLWYWNSQNGPGTMTPHNAIVNN----------- 217
Query: 176 RLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225
G+G T ING +EC G A V++RI FT F G G +L C
Sbjct: 218 --AGFGETIRSINGALECNGGNPAQVQSRINKFTQFTQILGTTTGPNLSC 265
>pdb|2WAQ|N Chain N, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|N Chain N, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|O Chain O, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|N Chain N, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|O Chain O, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|N Chain N, Rnap At 3.2ang
pdb|4B1O|N Chain N, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|O Chain O, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 66
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 156 SCHEVIIDEWKPSANDVNAGRLPG 179
+C +I D+W+P VNAG PG
Sbjct: 9 TCGSLIADKWQPFITRVNAGENPG 32
>pdb|3S6O|A Chain A, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|B Chain B, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|C Chain C, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
pdb|3S6O|D Chain D, Crystal Structure Of A Polysaccharide Deacetylase Family
Protein From Burkholderia Pseudomallei
Length = 321
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 83 PPSDYCDPNYPCRGKYYGRGPIQLSW 108
P S DPNYP YGR P+Q +W
Sbjct: 2 PGSMAFDPNYPRDLIGYGRHPVQANW 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,436,332
Number of Sequences: 62578
Number of extensions: 373332
Number of successful extensions: 756
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 28
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)