Query 026315
Match_columns 240
No_of_seqs 125 out of 873
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00325 chitinase_glyco_hydro_ 100.0 8.5E-73 1.8E-77 493.8 16.3 223 1-225 5-230 (230)
2 PF00182 Glyco_hydro_19: Chiti 100.0 5.8E-73 1.3E-77 496.1 8.8 223 1-225 6-232 (232)
3 KOG4742 Predicted chitinase [G 100.0 3.1E-57 6.8E-62 401.3 9.6 209 1-225 70-286 (286)
4 COG3179 Predicted chitinase [G 100.0 1.5E-35 3.2E-40 248.2 5.7 173 1-215 8-204 (206)
5 cd00442 lysozyme_like lysozyme 99.3 1.8E-12 3.9E-17 100.4 3.9 87 49-158 1-89 (105)
6 KOG3625 Alpha amylase [Carbohy 48.4 13 0.00028 39.5 2.4 46 101-150 1092-1144(1521)
7 PF04651 Pox_A12: Poxvirus A12 32.9 39 0.00085 28.9 2.6 29 21-61 10-38 (189)
8 PF01337 Barstar: Barstar (bar 25.2 35 0.00076 25.0 0.9 26 199-224 6-33 (90)
9 KOG4519 Phosphomevalonate kina 21.1 56 0.0012 31.0 1.6 29 36-64 182-210 (459)
10 PF07208 DUF1414: Protein of u 20.9 54 0.0012 21.7 1.0 27 182-216 15-41 (44)
No 1
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=8.5e-73 Score=493.77 Aligned_cols=223 Identities=65% Similarity=1.281 Sum_probs=215.6
Q ss_pred ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE 80 (240)
Q Consensus 1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E 80 (240)
+||+|||+||+..||+++||||++||+|+++||.|+++|+.+++|||+||||||++|||++++...|.++|+||+|+.+|
T Consensus 5 ~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c~~~e 84 (230)
T cd00325 5 LFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYCDKSE 84 (230)
T ss_pred HHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC-CCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCCCCCc
Q 026315 81 VSPPSDYCD-PNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSC 157 (240)
Q Consensus 81 ~~~~~~y~~-~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~~~s~ 157 (240)
..+...||. .++||. ++|||||+||||||+||+++++++++ |||+|||+|++||.+|+++|+||||+.+.++|++
T Consensus 85 ~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~--dll~~Pdlva~dp~~a~~sA~WfW~t~~~~k~s~ 162 (230)
T cd00325 85 TGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGF--DLLNNPDLVATDPVVSFKTAIWFWMTPQGPKPSC 162 (230)
T ss_pred CCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCC--ccccCHHHHhcCchhhhhhhhhheeeCCCCCCCc
Confidence 987777877 678886 99999999999999999999999998 9999999999999999999999999999999999
Q ss_pred chhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCcC
Q 026315 158 HEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225 (240)
Q Consensus 158 ~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c 225 (240)
|+||+|+|+|++.|..+++.++|+.||+|||||+||+++..+++.+|+++|++++++|||+||++|+|
T Consensus 163 h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~~g~nL~C 230 (230)
T cd00325 163 HDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVSPGDNLDC 230 (230)
T ss_pred ceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999888888899999999999999999999999999999999999999999999999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=5.8e-73 Score=496.12 Aligned_cols=223 Identities=63% Similarity=1.265 Sum_probs=195.5
Q ss_pred ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE 80 (240)
Q Consensus 1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E 80 (240)
+||+|||+||++.||+++||||++||+|+++||.|+++|+.++++|||||||||++|||++++..+|.++++|++|+.+|
T Consensus 6 ~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gyc~~~e 85 (232)
T PF00182_consen 6 FFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGYCYKRE 85 (232)
T ss_dssp HHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTTS-SB-
T ss_pred HHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhcccccccccccccccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC--CCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCCCCC
Q 026315 81 VSPPSDYCD--PNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPS 156 (240)
Q Consensus 81 ~~~~~~y~~--~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~~~s 156 (240)
..+...||+ .++||. ++|||||+|||||++||+++++++++ |||+|||||++||.+|+++|+||||+.+.++|+
T Consensus 86 ~~~~~~y~~~~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~--dl~~nP~lv~~d~~~a~~sA~wfW~~~~~~~ps 163 (232)
T PF00182_consen 86 KGANSDYCNRNGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGL--DLLNNPDLVATDPWLAFKSAIWFWMTPQPPKPS 163 (232)
T ss_dssp SS-SSGG--TTSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS---TTT-TTHHHH-HHHHHHHHHHHHHHSBTTBSS
T ss_pred cCCccccccCccCccCCCCCeEecccccccchhhhHHHHHHHhCC--ccccChHHHHhhHHHHHHhhhhheeecCCCccC
Confidence 888789998 567876 99999999999999999999999999 999999999999999999999999999999999
Q ss_pred cchhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHhCCCCCCCCcC
Q 026315 157 CHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 225 (240)
Q Consensus 157 ~~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lgv~~g~~l~c 225 (240)
+|++|+++|+|+..|..+++.++|+.||+|||||+||+++++.++.+|+++|+++|++|||+||++|+|
T Consensus 164 ~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~~g~nl~C 232 (232)
T PF00182_consen 164 CHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVDPGDNLDC 232 (232)
T ss_dssp HHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT----S----
T ss_pred cchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=3.1e-57 Score=401.25 Aligned_cols=209 Identities=54% Similarity=1.115 Sum_probs=192.6
Q ss_pred ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCcccccccccc
Q 026315 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISE 80 (240)
Q Consensus 1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E 80 (240)
|||+||++++.+.|++++||||+.||.|+++|++|+.+|+.++.+||+|+||||+.|||++++...+.++|.|+|++.+|
T Consensus 70 ~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e 149 (286)
T KOG4742|consen 70 LFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEE 149 (286)
T ss_pred HHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CCCCCC--CC--CCCC--CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCchhhhhhhHHHhHhCCCC
Q 026315 81 VSP-PSDYCD--PN--YPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDPVLSFKSAIWFWMTAQPP 153 (240)
Q Consensus 81 ~~~-~~~y~~--~~--~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~~~A~~sA~wfW~~~~~~ 153 (240)
+.+ ...||+ .+ |||. +.|+|||+|||+|++||+++++.|++ ||+++||+|+.||.+|+++|+||||++..
T Consensus 150 ~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~--dLL~~Pe~V~~np~lAf~~alWfwmt~~~- 226 (286)
T KOG4742|consen 150 ISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGL--DLLRNPELVAMNPVLAFKAALWFWMTPVR- 226 (286)
T ss_pred cChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCc--hhhcCcchhccCchhhhheeeeeeccCCc-
Confidence 987 679998 22 8998 99999999999999999999999999 99999999999999999999999999832
Q ss_pred CCCcchhhcccCCCCccccccCCCCcccccceeeeCccccCCCCch-HHHHHHHHHHHHHHHhCCCCCCCCcC
Q 026315 154 KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNA-AVRNRIGFFTTFCGKFGIQPGDSLDC 225 (240)
Q Consensus 154 ~~s~~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~-g~~~R~~~y~~~~~~lgv~~g~~l~c 225 (240)
| +.++.++.+.++|+.+|++|||++||+.++.. ..++|+++|+.++++|||+||.+|+|
T Consensus 227 -p------------~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~~~~~~~Ri~~y~~~c~~fGv~pG~nLsC 286 (286)
T KOG4742|consen 227 -P------------VLNDFAAYDTPGFGATTRAINGDLECGGGNLDGVKARRIKYYLAYCGLFGVNPGPNLSC 286 (286)
T ss_pred -h------------hhhhhhcccCCCcchhhhhhccceeccCCCCCcchhHHHHHHHHHHHhhCCCCCCCCCC
Confidence 2 23333455668999999999999999988744 55569999999999999999999999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=248.22 Aligned_cols=173 Identities=28% Similarity=0.372 Sum_probs=133.2
Q ss_pred ChhhhhcccCCCCCCCCCCCCHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCCCCCCCCCCCccc-cc----
Q 026315 1 MFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAW-GY---- 75 (240)
Q Consensus 1 ~f~~~f~~~~~~~~~~~~~~ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~~~~~~~~~~~~~-g~---- 75 (240)
+|..|||+.- +. .-.++.|+... ..+..|++++| +||||||++||||+|+.++||.+||+ ++
T Consensus 8 ~~~ki~p~a~------k~---~~~v~~al~~~---l~~~gi~~p~r-~AmFlAQ~~HESggf~rl~EnlnYSaq~L~~tf 74 (206)
T COG3179 8 DLRKIFPKAR------KE---FVDVIVALQPA---LDEAGITTPLR-QAMFLAQVMHESGGFTRLDENLNYSAQGLLQTF 74 (206)
T ss_pred HHHHhcchhh------hh---hHHHHHHHHHH---HHHhcCCCHHH-HHHHHHHHhhhcCCceeehhhcchHHHHHHHhc
Confidence 4677887631 11 22344454322 33346899999 99999999999999999999999997 21
Q ss_pred -------ccccccCCC------CCCCC--CCCC---CC-CCcccCCCccccchHHHHHHHhhcCCCCcccCCccccccCc
Q 026315 76 -------CFISEVSPP------SDYCD--PNYP---CR-GKYYGRGPIQLSWNYNYLRCGEGLGLGEELLNNPDLLATDP 136 (240)
Q Consensus 76 -------~~~~E~~~~------~~y~~--~~~p---~~-~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~~nPdlva~d~ 136 (240)
.+-+|+... .+|.. +|.| +| |.|||||+|||||+.||+.+++++|+ ||+.+|+++.. +
T Consensus 75 ~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~--dlv~~P~~~~~-~ 151 (206)
T COG3179 75 PKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGL--DLVANPGQLEL-D 151 (206)
T ss_pred cccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCC--CccCChhhhcc-C
Confidence 222333221 34543 4444 45 99999999999999999999999999 99999999987 5
Q ss_pred hhhhhhhHHHhHhCCCCCCCcchhhcccCCCCccccccCCCCcccccceeeeCccccCCCCchHHHHHHHHHHHHHHHh
Q 026315 137 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKF 215 (240)
Q Consensus 137 ~~A~~sA~wfW~~~~~~~~s~~~~~~~~w~~~~~d~~a~~~~~f~~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~l 215 (240)
.++.++|+|||.+..+++. +| .+++..||++||||. ||+++|...|+++.-++
T Consensus 152 ~~~a~~a~wyw~~~g~n~~------------------aD-~gd~~~VT~~INGG~-------NG~~dR~~r~~~a~~v~ 204 (206)
T COG3179 152 PHAARVAAWYWKTRGLNAL------------------AD-EGDLVRVTRKINGGL-------NGLDDRLARYRRASGVL 204 (206)
T ss_pred hHhhhhHHHHHHhccHHHh------------------hc-cCChhhhhhhhcCcc-------ccHHHHHHHHHHHhccc
Confidence 7788999999999887531 22 268999999999999 99999999999987654
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.30 E-value=1.8e-12 Score=100.44 Aligned_cols=87 Identities=22% Similarity=0.112 Sum_probs=70.5
Q ss_pred HHhhhhcccccCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCC--CCcccCCCccccchHHHHHHHhhcCCCCccc
Q 026315 49 AAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCR--GKYYGRGPIQLSWNYNYLRCGEGLGLGEELL 126 (240)
Q Consensus 49 A~FLAq~~hETg~~~~~~~~~~~~~g~~~~~E~~~~~~y~~~~~p~~--~~Y~GRG~IQLTg~~NY~~~~~~lg~~~dl~ 126 (240)
|.|.++..||+.+++.. ++. .|| ||. ..|+|||+||+||++||...++.+++ +++
T Consensus 1 a~~~~i~~~E~~~~~~~-------------~~~----Gy~----~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~--~~~ 57 (105)
T cd00442 1 AIIDMLASSEGTDLKAY-------------KDR----GHG----TLNPGERGYGIGLYQLTSRWSDAYRARGIGL--KLL 57 (105)
T ss_pred ChhhhhhhcccCCCccc-------------ccC----CCC----CCCCCCcccccCceeeeeccCccccccccCc--chh
Confidence 57899999999984322 221 254 454 67999999999999999988888888 999
Q ss_pred CCccccccCchhhhhhhHHHhHhCCCCCCCcc
Q 026315 127 NNPDLLATDPVLSFKSAIWFWMTAQPPKPSCH 158 (240)
Q Consensus 127 ~nPdlva~d~~~A~~sA~wfW~~~~~~~~s~~ 158 (240)
.+|++++.+|.+++..+.||||......++++
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~n~~~~~~ 89 (105)
T cd00442 58 AQLILKLFNPKVQDKQALQQIKNAGALIMSSF 89 (105)
T ss_pred cCcchhccCchHHHHHHHHHHHhccCCCCccc
Confidence 99999999999999999999998765544433
No 6
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=48.45 E-value=13 Score=39.55 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=31.9
Q ss_pred CCCccccchHHHHHH-----HhhcCCCCcccCCcccccc--CchhhhhhhHHHhHhC
Q 026315 101 RGPIQLSWNYNYLRC-----GEGLGLGEELLNNPDLLAT--DPVLSFKSAIWFWMTA 150 (240)
Q Consensus 101 RG~IQLTg~~NY~~~-----~~~lg~~~dl~~nPdlva~--d~~~A~~sA~wfW~~~ 150 (240)
||.+-+|||++=.++ ...|-- .|+ |.|+.. .|.+-++-|+|||+..
T Consensus 1092 rG~ll~TGRy~EAr~iIlaFa~tlrH--GLI--PNLLd~G~~~RyNcRDA~W~wl~~ 1144 (1521)
T KOG3625|consen 1092 RGILLITGRYVEARNIILAFAGTLRH--GLI--PNLLDEGIYARYNCRDAVWWWLQC 1144 (1521)
T ss_pred ccceEeecchHHHHHHHHHHHHHhhc--ccc--chhhhccccccccchHHHHHHHHH
Confidence 799999999885543 333311 334 666544 5789999999999853
No 7
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=32.93 E-value=39 Score=28.92 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhCccCCCCCCcchhhHHHHHhhhhcccccCC
Q 026315 21 TYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 61 (240)
Q Consensus 21 ty~~fi~A~~~~~~F~~~g~~~t~~re~A~FLAq~~hETg~ 61 (240)
|||.+|+++++. +-+ |-..|||+.-|...
T Consensus 10 SYDDYIeTinKi---------tPQ---LrtlLahI~geq~~ 38 (189)
T PF04651_consen 10 SYDDYIETINKI---------TPQ---LRTLLAHISGEQAN 38 (189)
T ss_pred cHHHHHHHHHHh---------CHH---HHHHHHHhcccccc
Confidence 899999999873 434 45789999999886
No 8
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=25.19 E-value=35 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHhCCC--CCCCCc
Q 026315 199 AAVRNRIGFFTTFCGKFGIQ--PGDSLD 224 (240)
Q Consensus 199 ~g~~~R~~~y~~~~~~lgv~--~g~~l~ 224 (240)
.++.++.++|+.+.+.|+.+ .|.|||
T Consensus 6 ~~i~~~~~~~~~l~~~l~fP~yfG~NlD 33 (90)
T PF01337_consen 6 RKIRDKEDFYDALAEALDFPDYFGRNLD 33 (90)
T ss_dssp CC-SSHHHHHHHHHHHTT--TTSSSSHH
T ss_pred CCCCCHHHHHHHHHHHcCCCchhcCCHH
Confidence 46889999999999999987 577765
No 9
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=21.10 E-value=56 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=23.7
Q ss_pred CCCCCcchhhHHHHHhhhhcccccCCCCC
Q 026315 36 GNSGNETMRKREIAAFFAQTGHETTGGWP 64 (240)
Q Consensus 36 ~~~g~~~t~~re~A~FLAq~~hETg~~~~ 64 (240)
|++|.++..-+++.|.|||++|=...+.+
T Consensus 182 ~k~~k~d~s~~~viHnlAQ~aHC~AQGKv 210 (459)
T KOG4519|consen 182 CKEGKFDCSDLDVIHNLAQTAHCLAQGKV 210 (459)
T ss_pred ccccccCchHHHHHHHHHHHHHHHhcCCc
Confidence 56777887778899999999998887543
No 10
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=20.90 E-value=54 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.6
Q ss_pred ccceeeeCccccCCCCchHHHHHHHHHHHHHHHhC
Q 026315 182 LTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFG 216 (240)
Q Consensus 182 ~vt~iINGg~ec~~~~~~g~~~R~~~y~~~~~~lg 216 (240)
.+|+|||... ..+.|...-+++.++|.
T Consensus 15 ~vTniln~~V--------~~~qR~~iAe~Fa~AL~ 41 (44)
T PF07208_consen 15 MVTNILNTSV--------PPAQRQAIAEKFAQALK 41 (44)
T ss_dssp HHHHHHHHCS---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--------CHHHHHHHHHHHHHHHH
Confidence 5789999876 57899999999888773
Done!