BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026316
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118488288|gb|ABK95963.1| unknown [Populus trichocarpa]
Length = 232
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/240 (89%), Positives = 221/240 (92%), Gaps = 8/240 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPVA 240
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIHP KEE YV P T+IE+PVA
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEYVPPVMTTNIEIPVA 232
>gi|359476269|ref|XP_002281141.2| PREDICTED: 40S ribosomal protein S3-3-like [Vitis vinifera]
gi|296081703|emb|CBI20708.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/239 (89%), Positives = 222/239 (92%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGKRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML+WD KGKQGPTTPLPDLVTIH P +EE YV P T+IE+P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHTPKEEEEYVPPVLTTNIEVP 231
>gi|224135747|ref|XP_002322150.1| predicted protein [Populus trichocarpa]
gi|222869146|gb|EEF06277.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/241 (89%), Positives = 221/241 (91%), Gaps = 9/241 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK-EEVYVAPATATSIELPV 239
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIHP K EE YV P T+IE+PV
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEEYVPPLLTTNIEIPV 232
Query: 240 A 240
A
Sbjct: 233 A 233
>gi|225444782|ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
gi|297738588|emb|CBI27833.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/242 (88%), Positives = 222/242 (91%), Gaps = 10/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT-ATSIELP 238
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y+ P AT IE+P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVP 232
Query: 239 VA 240
A
Sbjct: 233 TA 234
>gi|255546003|ref|XP_002514061.1| 40S ribosomal protein S3, putative [Ricinus communis]
gi|223546517|gb|EEF48015.1| 40S ribosomal protein S3, putative [Ricinus communis]
Length = 233
Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/241 (89%), Positives = 221/241 (91%), Gaps = 9/241 (3%)
Query: 1 MAT-QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MAT QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVL
Sbjct: 1 MATAQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GEKGRRIRELTSVVQKRFKFPENSVELYAEKVN+RGLCAIAQAESLRYKLLGGLAVRRAC
Sbjct: 61 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNSRGLCAIAQAESLRYKLLGGLAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSA
Sbjct: 121 YGVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPV 239
VRHVLLRQGVLGIKVKIML+WD KGKQGPTTPLPDLVTIH KEE P AT +E+PV
Sbjct: 173 VRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHSPKEEELRPPVLATEVEVPV 232
Query: 240 A 240
A
Sbjct: 233 A 233
>gi|356559951|ref|XP_003548259.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max]
Length = 236
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/243 (88%), Positives = 223/243 (91%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y PA AT+IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATNIEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|224088766|ref|XP_002308530.1| predicted protein [Populus trichocarpa]
gi|118483836|gb|ABK93809.1| unknown [Populus trichocarpa]
gi|118485378|gb|ABK94546.1| unknown [Populus trichocarpa]
gi|222854506|gb|EEE92053.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/242 (88%), Positives = 222/242 (91%), Gaps = 10/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK-EEVYVAPAT-ATSIELP 238
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIHP K EE YVAP T+IE+P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEEYVAPPVMTTNIEIP 232
Query: 239 VA 240
VA
Sbjct: 233 VA 234
>gi|356534894|ref|XP_003535986.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max]
Length = 236
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/244 (87%), Positives = 222/244 (90%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA---TATSIE 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y+ PA A IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIE 232
Query: 237 LPVA 240
+PVA
Sbjct: 233 VPVA 236
>gi|356559953|ref|XP_003548260.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max]
Length = 235
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/243 (88%), Positives = 222/243 (91%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA+Q+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MASQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y PA AT IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATDIEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|224141685|ref|XP_002324195.1| predicted protein [Populus trichocarpa]
gi|118483222|gb|ABK93514.1| unknown [Populus trichocarpa]
gi|118487214|gb|ABK95435.1| unknown [Populus trichocarpa]
gi|222865629|gb|EEF02760.1| predicted protein [Populus trichocarpa]
Length = 234
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/241 (89%), Positives = 221/241 (91%), Gaps = 10/241 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-EVYVAPATATS-IELP 238
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIHP KE E YVAP T+ IE+P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEDEEYVAPPVMTANIEIP 232
Query: 239 V 239
V
Sbjct: 233 V 233
>gi|351726176|ref|NP_001235326.1| uncharacterized protein LOC100499737 [Glycine max]
gi|255626187|gb|ACU13438.1| unknown [Glycine max]
Length = 236
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/244 (87%), Positives = 222/244 (90%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC+
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACH 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA---TATSIE 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y+ PA A IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIQPAPVLAANDIE 232
Query: 237 LPVA 240
+PVA
Sbjct: 233 VPVA 236
>gi|388495648|gb|AFK35890.1| unknown [Lotus japonicus]
Length = 235
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/243 (86%), Positives = 223/243 (91%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPV+TEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVV KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA--TATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +E+ Y+ PA +A+ IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSASDIEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|388494596|gb|AFK35364.1| unknown [Lotus japonicus]
gi|388504726|gb|AFK40429.1| unknown [Lotus japonicus]
Length = 237
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/243 (86%), Positives = 223/243 (91%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP++TEIIIRATRTQ VLG
Sbjct: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA--TATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +E+ Y+ PA +A +E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSAEEVEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|358348478|ref|XP_003638273.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|355504208|gb|AES85411.1| 40S ribosomal protein S3 [Medicago truncatula]
Length = 239
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/242 (87%), Positives = 221/242 (91%), Gaps = 11/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +EE Y+ PA A IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEV 232
Query: 238 PV 239
PV
Sbjct: 233 PV 234
>gi|255637340|gb|ACU19000.1| unknown [Glycine max]
Length = 236
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/243 (87%), Positives = 221/243 (90%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMI SGQPV +YID AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMIFSGQPVKDYIDFAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y PA AT+IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYARPAAVLATNIEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|255550145|ref|XP_002516123.1| 40S ribosomal protein S3, putative [Ricinus communis]
gi|223544609|gb|EEF46125.1| 40S ribosomal protein S3, putative [Ricinus communis]
Length = 234
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/242 (87%), Positives = 221/242 (91%), Gaps = 10/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MSTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FP+NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPDNSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATS-IELP 238
RHVLLRQGVLGIKVKIML+WD +GK GP TPLPDLVTIH P +EE Y PA T+ IE+P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPRGKLGPMTPLPDLVTIHSPKEEEEYNTPAVLTANIEIP 232
Query: 239 VA 240
VA
Sbjct: 233 VA 234
>gi|357438107|ref|XP_003589329.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|355478377|gb|AES59580.1| 40S ribosomal protein S3 [Medicago truncatula]
Length = 239
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/242 (87%), Positives = 221/242 (91%), Gaps = 11/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYK+LGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKVLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +EE Y+ PA A IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEV 232
Query: 238 PV 239
PV
Sbjct: 233 PV 234
>gi|225442156|ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
gi|297743020|emb|CBI35887.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/242 (87%), Positives = 220/242 (90%), Gaps = 10/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN+VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYV-APATATSIELP 238
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y+ P A IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVA 232
Query: 239 VA 240
A
Sbjct: 233 AA 234
>gi|356534900|ref|XP_003535989.1| PREDICTED: 40S ribosomal protein S3-3-like [Glycine max]
Length = 239
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/244 (86%), Positives = 220/244 (90%), Gaps = 13/244 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATA----TSI 235
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y+ PA I
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHSPKEEEEYIRPAPVLAANNDI 232
Query: 236 ELPV 239
E+PV
Sbjct: 233 EVPV 236
>gi|217071088|gb|ACJ83904.1| unknown [Medicago truncatula]
gi|388507820|gb|AFK41976.1| unknown [Medicago truncatula]
Length = 239
Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/242 (87%), Positives = 220/242 (90%), Gaps = 11/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR CY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRVCY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +EE Y+ PA A IE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEV 232
Query: 238 PV 239
PV
Sbjct: 233 PV 234
>gi|449446618|ref|XP_004141068.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
gi|449488075|ref|XP_004157933.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
Length = 243
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/237 (88%), Positives = 218/237 (91%), Gaps = 11/237 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE---VYVAPATATS 234
RHVLLRQGVLGIKVKIML+WD KGKQGPTTPLPD+VTIH KEE V+ PA T+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTA 229
>gi|449447888|ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
gi|449521735|ref|XP_004167885.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
Length = 236
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/244 (86%), Positives = 220/244 (90%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT---ATSIE 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE ++ P T IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHSPKEEEDFIRPVAVIPTTEIE 232
Query: 237 LPVA 240
+ A
Sbjct: 233 VGAA 236
>gi|357439691|ref|XP_003590123.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|217071466|gb|ACJ84093.1| unknown [Medicago truncatula]
gi|355479171|gb|AES60374.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|388518095|gb|AFK47109.1| unknown [Medicago truncatula]
Length = 239
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/239 (87%), Positives = 218/239 (91%), Gaps = 11/239 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIE 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +EE Y+ PA A IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIE 231
>gi|192910782|gb|ACF06499.1| ribosomal protein [Elaeis guineensis]
Length = 235
Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/243 (86%), Positives = 218/243 (89%), Gaps = 11/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMIS GQPV EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISCGQPVKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAP--ATATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDL +IH P EE Y+ P A +E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPATPLPDLASIHTPKDEEEYMRPPLTMAPELEV 232
Query: 238 PVA 240
PVA
Sbjct: 233 PVA 235
>gi|358248410|ref|NP_001239621.1| uncharacterized protein LOC100808705 [Glycine max]
gi|255641130|gb|ACU20843.1| unknown [Glycine max]
Length = 236
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/244 (87%), Positives = 220/244 (90%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIE- 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y P A IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYNRPPAVLANDIEV 232
Query: 237 LPVA 240
+PVA
Sbjct: 233 VPVA 236
>gi|116786147|gb|ABK23996.1| unknown [Picea sitchensis]
gi|116793880|gb|ABK26916.1| unknown [Picea sitchensis]
Length = 233
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/224 (91%), Positives = 210/224 (93%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKK+KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKKKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE +VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID AV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDKAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML+WD KGKQGPTTPLPDLVTIH KEE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHTPKEE 216
>gi|255638159|gb|ACU19393.1| unknown [Glycine max]
Length = 236
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/244 (86%), Positives = 219/244 (89%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR CY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRVCY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT--ATSIE- 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P +EE Y P A IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYNRPPAVLANDIEV 232
Query: 237 LPVA 240
+PVA
Sbjct: 233 VPVA 236
>gi|357144865|ref|XP_003573440.1| PREDICTED: 40S ribosomal protein S3-3-like [Brachypodium
distachyon]
Length = 227
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/235 (86%), Positives = 214/235 (91%), Gaps = 8/235 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVTIHP KEE + P T +
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDELRPPTLVEV 227
>gi|115473289|ref|NP_001060243.1| Os07g0608500 [Oryza sativa Japonica Group]
gi|14192875|gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contains C-terminal domain [Oryza
sativa]
gi|34394183|dbj|BAC84635.1| putative 40S ribosomal protein [Oryza sativa Japonica Group]
gi|50509862|dbj|BAD32034.1| putative 40S ribosomal protein [Oryza sativa Japonica Group]
gi|113611779|dbj|BAF22157.1| Os07g0608500 [Oryza sativa Japonica Group]
gi|125559132|gb|EAZ04668.1| hypothetical protein OsI_26820 [Oryza sativa Indica Group]
gi|125601033|gb|EAZ40609.1| hypothetical protein OsJ_25071 [Oryza sativa Japonica Group]
gi|215694983|dbj|BAG90174.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 233
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/239 (87%), Positives = 215/239 (89%), Gaps = 12/239 (5%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
TQISKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF FPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVN YIDSAVRH
Sbjct: 125 LRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRH 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIELPVA 240
VLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIH P E+ + P TA E+PVA
Sbjct: 177 VLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTA---EIPVA 232
>gi|326493582|dbj|BAJ85252.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510059|dbj|BAJ87246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 227
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/229 (88%), Positives = 212/229 (92%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVTIHP KEE + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDELRP 221
>gi|82623397|gb|ABB87113.1| unknown [Solanum tuberosum]
Length = 238
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/225 (91%), Positives = 210/225 (93%), Gaps = 9/225 (4%)
Query: 1 MAT-QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MAT QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVL
Sbjct: 1 MATPQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GEKGRRIRELTSVVQKRF F ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC
Sbjct: 61 GEKGRRIRELTSVVQKRFNFKENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPV EYID+A
Sbjct: 121 YGVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDAA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VRHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIHP KEE
Sbjct: 173 VRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEE 217
>gi|357498229|ref|XP_003619403.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|357498233|ref|XP_003619405.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|355494418|gb|AES75621.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|355494420|gb|AES75623.1| 40S ribosomal protein S3 [Medicago truncatula]
Length = 235
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/242 (84%), Positives = 217/242 (89%), Gaps = 10/242 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGY+GVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFK YMISSGQPV +Y+DSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATS-IELP 238
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P EE Y PA + + +P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVAPLPVP 232
Query: 239 VA 240
+A
Sbjct: 233 IA 234
>gi|115453877|ref|NP_001050539.1| Os03g0577000 [Oryza sativa Japonica Group]
gi|38093738|gb|AAR10854.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|108709465|gb|ABF97260.1| 40S ribosomal protein S3, putative, expressed [Oryza sativa
Japonica Group]
gi|113549010|dbj|BAF12453.1| Os03g0577000 [Oryza sativa Japonica Group]
gi|125544608|gb|EAY90747.1| hypothetical protein OsI_12347 [Oryza sativa Indica Group]
gi|125586911|gb|EAZ27575.1| hypothetical protein OsJ_11524 [Oryza sativa Japonica Group]
gi|215686413|dbj|BAG87698.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708682|dbj|BAG93951.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 228
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/229 (88%), Positives = 211/229 (92%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVTIH KEE + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPTTPLPDLVTIHAPKEEEELRP 221
>gi|15238533|ref|NP_198403.1| 40S ribosomal protein S3-3 [Arabidopsis thaliana]
gi|75170994|sp|Q9FJA6.1|RS33_ARATH RecName: Full=40S ribosomal protein S3-3
gi|9758155|dbj|BAB08712.1| 40S ribosomal protein S3 [Arabidopsis thaliana]
gi|16604318|gb|AAL24165.1| AT5g35530/MOK9_14 [Arabidopsis thaliana]
gi|20466075|gb|AAM19959.1| AT5g35530/MOK9_14 [Arabidopsis thaliana]
gi|332006595|gb|AED93978.1| 40S ribosomal protein S3-3 [Arabidopsis thaliana]
Length = 248
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/231 (86%), Positives = 214/231 (92%), Gaps = 9/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 230
RHVLLRQGVLG+KVKIML+WD KGKQGP TPLPD+V IH P +++VY+APA
Sbjct: 173 RHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223
>gi|168010087|ref|XP_001757736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168036169|ref|XP_001770580.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066635|ref|XP_001785240.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663171|gb|EDQ49951.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678101|gb|EDQ64563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691012|gb|EDQ77376.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 231
Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/224 (89%), Positives = 209/224 (93%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF+FPE +VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFQFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRA RAKSMKFKDGYMISSG PVN+YIDSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMISSGSPVNDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHV+LRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH KEE
Sbjct: 173 RHVMLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDVVTIHMPKEE 216
>gi|413921201|gb|AFW61133.1| 40S ribosomal protein S3 [Zea mays]
Length = 228
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 210/229 (91%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIH KEE + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKEEDELRP 221
>gi|168010855|ref|XP_001758119.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168015431|ref|XP_001760254.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168037634|ref|XP_001771308.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677397|gb|EDQ63868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688634|gb|EDQ75010.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690575|gb|EDQ76941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 230
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/224 (89%), Positives = 209/224 (93%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF+FPE +VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFQFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRA RAKSMKFKDGYMISSG PVN+YIDSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMISSGSPVNDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHV+LRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH KEE
Sbjct: 173 RHVMLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDVVTIHMPKEE 216
>gi|116783944|gb|ABK23152.1| unknown [Picea sitchensis]
gi|116792247|gb|ABK26290.1| unknown [Picea sitchensis]
Length = 233
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/239 (85%), Positives = 214/239 (89%), Gaps = 10/239 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MAKQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE +VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID AV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVA-PATATSIEL 237
RHVLLRQGVLGIKVKIML+WD KGKQGPT PLPD VTI+ P EE + + P+ +E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDFVTIYTPKDEEDFSSKPSVGNEVEI 231
>gi|313103630|pdb|3IZ6|B Chain B, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
gi|22204124|gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum]
Length = 227
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/229 (88%), Positives = 211/229 (92%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF F EN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVTIHP KEE + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENELRP 221
>gi|255637525|gb|ACU19089.1| unknown [Glycine max]
Length = 239
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/244 (84%), Positives = 214/244 (87%), Gaps = 13/244 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAK MKFKDGYMI GQPV +YID AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKFMKFKDGYMIFFGQPVKDYIDFAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATA----TSI 235
RHVLLRQGV GIKVKIML+WD KGKQGP TPLPD VTIH P +EE Y+ PA I
Sbjct: 173 RHVLLRQGVFGIKVKIMLDWDPKGKQGPKTPLPDFVTIHFPKEEEEYIRPAPVLGANNDI 232
Query: 236 ELPV 239
E+PV
Sbjct: 233 EVPV 236
>gi|222424342|dbj|BAH20127.1| AT5G35530 [Arabidopsis thaliana]
Length = 248
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/231 (85%), Positives = 213/231 (92%), Gaps = 9/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRI ELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIGELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 230
RHVLLRQGVLG+KVKIML+WD KGKQGP TPLPD+V IH P +++VY+APA
Sbjct: 173 RHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223
>gi|195637410|gb|ACG38173.1| 40S ribosomal protein S3 [Zea mays]
Length = 228
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/229 (87%), Positives = 210/229 (91%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGA+GCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRFVMESGAEGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIH KEE + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKEEDELRP 221
>gi|242080689|ref|XP_002445113.1| hypothetical protein SORBIDRAFT_07g004290 [Sorghum bicolor]
gi|241941463|gb|EES14608.1| hypothetical protein SORBIDRAFT_07g004290 [Sorghum bicolor]
Length = 228
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/229 (87%), Positives = 210/229 (91%), Gaps = 8/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIH K+E + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKDEDELRP 221
>gi|15225107|ref|NP_180719.1| 40S ribosomal protein S3-1 [Arabidopsis thaliana]
gi|75206146|sp|Q9SIP7.1|RS31_ARATH RecName: Full=40S ribosomal protein S3-1
gi|14190419|gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|4582468|gb|AAD24852.1| 40S ribosomal protein; contains C-terminal domain [Arabidopsis
thaliana]
gi|15028253|gb|AAK76715.1| putative 40S ribosomal protein; contains C-terminal domain
[Arabidopsis thaliana]
gi|15450571|gb|AAK96463.1| At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|15451084|gb|AAK96813.1| 40S ribosomal protein [Arabidopsis thaliana]
gi|20148377|gb|AAM10079.1| 40S ribosomal protein; contains C-terminal domain [Arabidopsis
thaliana]
gi|20258907|gb|AAM14147.1| putative 40S ribosomal protein [Arabidopsis thaliana]
gi|330253473|gb|AEC08567.1| 40S ribosomal protein S3-1 [Arabidopsis thaliana]
Length = 250
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/235 (85%), Positives = 212/235 (90%), Gaps = 9/235 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATS 234
RHVLLRQGVLGIKVKIML+WD GK GP TPLPD+V IH K++ VY APA A +
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
>gi|242050848|ref|XP_002463168.1| hypothetical protein SORBIDRAFT_02g038990 [Sorghum bicolor]
gi|241926545|gb|EER99689.1| hypothetical protein SORBIDRAFT_02g038990 [Sorghum bicolor]
Length = 232
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/237 (86%), Positives = 213/237 (89%), Gaps = 12/237 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF FPE VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPEGGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVN YIDSAVRHVL
Sbjct: 127 FVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGHPVNLYIDSAVRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIELPVA 240
LRQGVLGIKVKIML+WD KGKQGPT PLPDLVTIH P +E+ ++ P A E+PVA
Sbjct: 179 LRQGVLGIKVKIMLDWDPKGKQGPTMPLPDLVTIHEPKEEDEFLRPLAA---EIPVA 232
>gi|297805098|ref|XP_002870433.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
gi|297316269|gb|EFH46692.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
Length = 248
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/231 (85%), Positives = 213/231 (92%), Gaps = 9/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRF+FP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFRFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 230
RHVLLRQGVLG+KVKIML+WD KGK GP TPLPD+V IH P +++VY+APA
Sbjct: 173 RHVLLRQGVLGLKVKIMLDWDPKGKLGPMTPLPDVVIIHTPKEDDVYIAPA 223
>gi|226495937|ref|NP_001149150.1| LOC100282772 [Zea mays]
gi|195625100|gb|ACG34380.1| 40S ribosomal protein S3 [Zea mays]
gi|223947389|gb|ACN27778.1| unknown [Zea mays]
gi|223972753|gb|ACN30564.1| unknown [Zea mays]
gi|413917290|gb|AFW57222.1| 40S ribosomal protein S3 [Zea mays]
Length = 229
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/224 (88%), Positives = 208/224 (92%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR++MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRYVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVTIH K+E
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKDE 216
>gi|212723988|ref|NP_001132637.1| hypothetical protein [Zea mays]
gi|194694962|gb|ACF81565.1| unknown [Zea mays]
gi|414887551|tpg|DAA63565.1| TPA: hypothetical protein ZEAMMB73_179327 [Zea mays]
gi|414887552|tpg|DAA63566.1| TPA: hypothetical protein ZEAMMB73_179327 [Zea mays]
Length = 232
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/229 (87%), Positives = 208/229 (90%), Gaps = 9/229 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF FPE VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPEGGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVN YIDSAVRHVL
Sbjct: 127 FVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGHPVNLYIDSAVRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATA 232
LRQGVLGIKVKIML+WD KGKQGPT PLPDLVTIH P +E+ ++ P A
Sbjct: 179 LRQGVLGIKVKIMLDWDPKGKQGPTMPLPDLVTIHVPKEEDEFLRPLAA 227
>gi|302761098|ref|XP_002963971.1| hypothetical protein SELMODRAFT_270414 [Selaginella moellendorffii]
gi|302768543|ref|XP_002967691.1| hypothetical protein SELMODRAFT_270666 [Selaginella moellendorffii]
gi|302769059|ref|XP_002967949.1| hypothetical protein SELMODRAFT_270664 [Selaginella moellendorffii]
gi|300164429|gb|EFJ31038.1| hypothetical protein SELMODRAFT_270666 [Selaginella moellendorffii]
gi|300164687|gb|EFJ31296.1| hypothetical protein SELMODRAFT_270664 [Selaginella moellendorffii]
gi|300167700|gb|EFJ34304.1| hypothetical protein SELMODRAFT_270414 [Selaginella moellendorffii]
Length = 230
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/228 (87%), Positives = 211/228 (92%), Gaps = 9/228 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ+VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE++VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPESTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVNE+ID AV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGSPVNEFIDRAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYV 227
RHVLLRQGVLGIKVKIML+WD KGK GP+TPLPD+VTI P +EE YV
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKTGPSTPLPDMVTIQVPKEEEEYV 220
>gi|297816692|ref|XP_002876229.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
gi|297322067|gb|EFH52488.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
Length = 249
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/227 (86%), Positives = 207/227 (91%), Gaps = 9/227 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVY 226
RHVLLRQGVLGIKVK+ML+WD KGK GP TPLPD+V IH P +EE Y
Sbjct: 173 RHVLLRQGVLGIKVKVMLDWDPKGKLGPMTPLPDVVIIHSPKEEETY 219
>gi|297822907|ref|XP_002879336.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
gi|297325175|gb|EFH55595.1| 40S ribosomal protein S3 [Arabidopsis lyrata subsp. lyrata]
Length = 250
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 198/231 (85%), Positives = 209/231 (90%), Gaps = 9/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKF DGYM+SSGQP EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFMDGYMVSSGQPTKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY-VAPA 230
RHVLLRQGVLGIKVKIML+WD GK GP TPLPD+V IH K++V +APA
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVNLAPA 223
>gi|15232352|ref|NP_190955.1| 40S ribosomal protein S3-2 [Arabidopsis thaliana]
gi|75183568|sp|Q9M339.1|RS32_ARATH RecName: Full=40S ribosomal protein S3-2
gi|16226458|gb|AAL16173.1|AF428405_1 AT3g53870/F5K20_170 [Arabidopsis thaliana]
gi|7630007|emb|CAB88349.1| ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|14334698|gb|AAK59527.1| putative ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|16323404|gb|AAL15196.1| putative ribosomal protein S3a homolog [Arabidopsis thaliana]
gi|21618068|gb|AAM67118.1| ribosomal protein S3a-like protein [Arabidopsis thaliana]
gi|332645631|gb|AEE79152.1| 40S ribosomal protein S3-2 [Arabidopsis thaliana]
Length = 249
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/224 (87%), Positives = 204/224 (91%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVK+ML+WD KG GP TPLPD+V IH KEE
Sbjct: 173 RHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
>gi|302761842|ref|XP_002964343.1| hypothetical protein SELMODRAFT_438700 [Selaginella moellendorffii]
gi|300168072|gb|EFJ34676.1| hypothetical protein SELMODRAFT_438700 [Selaginella moellendorffii]
Length = 236
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/234 (85%), Positives = 211/234 (90%), Gaps = 15/234 (6%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ+VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR---- 116
EKGRRIRELTSVVQKRF FPE++VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR
Sbjct: 61 EKGRRIRELTSVVQKRFSFPESTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRVLY 120
Query: 117 --RACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNE 174
RACYGVLRFIMESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVNE
Sbjct: 121 FVRACYGVLRFIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGSPVNE 172
Query: 175 YIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYV 227
+ID AVRHVLLRQGVLGIKVKIML+WD KGK GP+TPLPD+VTI P +EE YV
Sbjct: 173 FIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKTGPSTPLPDMVTIQVPKEEEEYV 226
>gi|326531446|dbj|BAJ97727.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 230
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/224 (85%), Positives = 203/224 (90%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADGVF AELNE+LTREL EDG++GVE+RVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FP+ VELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAK MKFKDGYMISSG PVN+YID AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKPMKFKDGYMISSGHPVNQYIDGAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIHP K++
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 216
>gi|357116410|ref|XP_003559974.1| PREDICTED: 40S ribosomal protein S3-3-like [Brachypodium
distachyon]
Length = 276
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/236 (82%), Positives = 207/236 (87%), Gaps = 12/236 (5%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKKRKFVADGVF AELNE+LTREL EDG++GVE+RVTP+RTEIIIRATRTQ+VLGEK
Sbjct: 49 AQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQSVLGEK 108
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF FP+ VELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACYGV
Sbjct: 109 GRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGV 168
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVN YID AVRH
Sbjct: 169 LRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGHPVNLYIDGAVRH 220
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY----VAPATATS 234
VLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIHP K+E +AP TA +
Sbjct: 221 VLLRQGVLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDEDEFLRPLAPQTAVA 276
>gi|83283961|gb|ABC01888.1| 40S ribosomal protein-like protein [Solanum tuberosum]
Length = 240
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/226 (86%), Positives = 204/226 (90%), Gaps = 9/226 (3%)
Query: 1 MAT-QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MAT QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVL
Sbjct: 1 MATPQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GEKGRRIR LTSVVQKRF F ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC
Sbjct: 61 GEKGRRIRSLTSVVQKRFNFKENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 120
Query: 120 YGVLRFIMESGA-KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
YGVLRF+MESG GCE + VSGKLRAQRAKSMK DGYMISSG PV++Y+D+
Sbjct: 121 YGVLRFVMESGTPTGCEVDS-------VSGKLRAQRAKSMKSTDGYMISSGLPVSDYVDA 173
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
AVRHVLLRQGVLGIKVKIML+WD KGKQGP TPLPDLVTIHP KEE
Sbjct: 174 AVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEE 219
>gi|413921202|gb|AFW61134.1| hypothetical protein ZEAMMB73_998294 [Zea mays]
Length = 265
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/266 (75%), Positives = 210/266 (78%), Gaps = 45/266 (16%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 172
Query: 181 RHVLLR-------------------------------------QGVLGIKVKIMLEWDQK 203
RHVLLR QGVLGIKVKIML+WD K
Sbjct: 173 RHVLLRQVCFATIARCNVCLSLGKHFIFDVPNVISQQTSFSVVQGVLGIKVKIMLDWDPK 232
Query: 204 GKQGPTTPLPDLVTIHPLKEEVYVAP 229
GK GP TPLPDLVTIH KEE + P
Sbjct: 233 GKVGPITPLPDLVTIHTPKEEDELRP 258
>gi|358346770|ref|XP_003637438.1| 40S ribosomal protein S3 [Medicago truncatula]
gi|355503373|gb|AES84576.1| 40S ribosomal protein S3 [Medicago truncatula]
Length = 237
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/243 (79%), Positives = 213/243 (87%), Gaps = 12/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRK VADGV AE++E L+R LAEDGYSGVE+RVTP+RTEIII+ATRTQ VLG
Sbjct: 1 MATQMSKKRKVVADGVLNAEMHEFLSRVLAEDGYSGVEIRVTPIRTEIIIKATRTQAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+++ KRF FPENSV+LYAEKV+NRGLCA AQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTTLIHKRFNFPENSVQLYAEKVSNRGLCAAAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFK G M+SSGQPV +YIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKHGDMLSSGQPVKDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT---ATSIE 236
RHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH P +EEVY PAT T+IE
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEVYNRPATILPTTNIE 232
Query: 237 LPV 239
+P+
Sbjct: 233 VPI 235
>gi|74272607|gb|ABA01099.1| 40S ribosomal protein S3 [Chlamydomonas incerta]
Length = 230
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/227 (83%), Positives = 202/227 (88%), Gaps = 9/227 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FP +SVELYAEKV++RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPPDSVELYAEKVSDRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSG P YID AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGHPARVYIDGAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVY 226
RHVLLRQGVLGIKVKIM EWD GK+GP TPLPD+V + P +EEVY
Sbjct: 173 RHVLLRQGVLGIKVKIMKEWDPTGKRGPRTPLPDVVKVLEPKEEEVY 219
>gi|159483497|ref|XP_001699797.1| ribosomal protein S3, component of cytosolic 80S ribosome and 40S
small subunit [Chlamydomonas reinhardtii]
gi|158281739|gb|EDP07493.1| ribosomal protein S3 [Chlamydomonas reinhardtii]
Length = 230
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/227 (83%), Positives = 201/227 (88%), Gaps = 9/227 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MAVQISKKRKFVQDGVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FP +SVELYAEKV++RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPPDSVELYAEKVSDRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSG P YID AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGNPAKVYIDGAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVY 226
RHVLLRQGVLGIKVKIM EWD GK+GP TPLPD+V + P +EEVY
Sbjct: 173 RHVLLRQGVLGIKVKIMKEWDPTGKRGPRTPLPDVVKVLEPKEEEVY 219
>gi|384247377|gb|EIE20864.1| putative 40S ribosomal protein S3, partial [Coccomyxa
subellipsoidea C-169]
Length = 217
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/224 (83%), Positives = 199/224 (88%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFVADGVF+AELNE+ TRELAE GYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATAISKKRKFVADGVFYAELNELFTRELAEHGYSGVEVRVTPLRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KGRRIRELT+VVQKRFKFPENSVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 VKGRRIRELTAVVQKRFKFPENSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIME+GAKGCE VIVSGKLRAQRAK+MKFKDGYMISSGQPVN+YIDSAV
Sbjct: 121 GVLRFIMENGAKGCE--------VIVSGKLRAQRAKAMKFKDGYMISSGQPVNDYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKV+IM D GK GP +PD+V +H K+E
Sbjct: 173 RHVLLRQGVLGIKVRIMKNHDPTGKSGPKATMPDVVVVHAPKDE 216
>gi|302829332|ref|XP_002946233.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
nagariensis]
gi|300269048|gb|EFJ53228.1| hypothetical protein VOLCADRAFT_120230 [Volvox carteri f.
nagariensis]
Length = 1596
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/227 (81%), Positives = 202/227 (88%), Gaps = 9/227 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1367 MAVQISKKRKFVADGVFYAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 1426
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FP +SVELYAEKV +RGLCA+AQAESLRYKLLGGLAVRRACY
Sbjct: 1427 EKGRRIRELTSVVQKRFNFPADSVELYAEKVLDRGLCAVAQAESLRYKLLGGLAVRRACY 1486
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSG P YID+AV
Sbjct: 1487 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGNPAKVYIDAAV 1538
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVY 226
RHVLLRQGVLGIKVKIM +WD GK+GP TPLPD+V + P +EE++
Sbjct: 1539 RHVLLRQGVLGIKVKIMKDWDPTGKRGPRTPLPDVVKVLEPKEEEIF 1585
>gi|303276783|ref|XP_003057685.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460342|gb|EEH57636.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 232
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/224 (82%), Positives = 200/224 (89%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF+AELNE+L RELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MSAQISKKRKFVADGVFYAELNEMLVRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRF F E SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFGFAEGSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIME+GAKGCE V+VSGKLR QR K+MKFKDGYMISSG PV EYI+S+V
Sbjct: 121 GVLRFIMENGAKGCE--------VVVSGKLRGQRGKAMKFKDGYMISSGNPVREYIESSV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQG +GIKVKIML+WD KG+ GP TP+PD+VTIH K+E
Sbjct: 173 RHVLLRQGCVGIKVKIMLDWDPKGRTGPKTPVPDVVTIHNPKDE 216
>gi|307103536|gb|EFN51795.1| hypothetical protein CHLNCDRAFT_59796 [Chlorella variabilis]
Length = 230
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/228 (80%), Positives = 200/228 (87%), Gaps = 8/228 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA+ +SK RK VADGVF+AELNE+L REL +GYSGVEVRVTP+RTE+IIRATRTQNVLG
Sbjct: 1 MASAVSKTRKAVADGVFYAELNELLMRELGGEGYSGVEVRVTPMRTEVIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KGRRIRELTSVVQKRFKFPE SVELYAEKV NRGLCA+AQAES+RYKLLGGLAVRRACY
Sbjct: 61 VKGRRIRELTSVVQKRFKFPEGSVELYAEKVANRGLCAVAQAESMRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYM+SSG PV+EYIDSA
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMVSSGNPVHEYIDSAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
RHVLLRQGVLGIKV+IM EWD GK GP TPLPD+VT+ KEE YV+
Sbjct: 173 RHVLLRQGVLGIKVRIMKEWDPTGKVGPRTPLPDVVTVLAPKEEEYVS 220
>gi|350537143|ref|NP_001232278.1| putative ribosomal protein S3 [Taeniopygia guttata]
gi|197128026|gb|ACH44524.1| putative ribosomal protein S3 [Taeniopygia guttata]
gi|197128027|gb|ACH44525.1| putative ribosomal protein S3 [Taeniopygia guttata]
gi|197128028|gb|ACH44526.1| putative ribosomal protein S3 [Taeniopygia guttata]
gi|197128029|gb|ACH44527.1| putative ribosomal protein S3 [Taeniopygia guttata]
gi|449284051|gb|EMC90633.1| 40S ribosomal protein S3 [Columba livia]
Length = 243
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 224
>gi|12847921|dbj|BAB27761.1| unnamed protein product [Mus musculus]
Length = 243
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 196/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE+LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEILTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|327281458|ref|XP_003225465.1| PREDICTED: 40S ribosomal protein S3-like [Anolis carolinensis]
Length = 243
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 224
>gi|45360887|ref|NP_989119.1| ribosomal protein S3 [Xenopus (Silurana) tropicalis]
gi|38512247|gb|AAH61265.1| ribosomal protein S3 [Xenopus (Silurana) tropicalis]
gi|89271265|emb|CAJ82962.1| ribosomal protein S3 [Xenopus (Silurana) tropicalis]
Length = 246
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 224
>gi|90991377|dbj|BAE93070.1| ribosomal protein S3 [Lethenteron camtschaticum]
Length = 240
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 182/225 (80%), Positives = 193/225 (85%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKK+KFVADGVF AE+NE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MATQMSKKKKFVADGVFKAEMNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSV+QKRF FPE SVELYAEKV NRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVIQKRFNFPEGSVELYAEKVANRGLCAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+A+
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNHYVDTAI 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I ++EV
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDTTGKMGPKKPLPDNVSIVEPRDEV 217
>gi|328767669|gb|EGF77718.1| hypothetical protein BATDEDRAFT_91509 [Batrachochytrium
dendrobatidis JAM81]
Length = 240
Score = 365 bits (936), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 181/235 (77%), Positives = 198/235 (84%), Gaps = 9/235 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T ISKKRKFVADGVF+AELNE L RELAE+GY+GVEVRVTP RTEI+IRATRTQNVLG
Sbjct: 1 MTTIISKKRKFVADGVFYAELNEFLQRELAEEGYAGVEVRVTPARTEIVIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRF +PEN+VELYAEKVNNRGL A+AQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSIVQKRFNYPENTVELYAEKVNNRGLSAVAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF+MESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQP EYID AV
Sbjct: 121 GVVRFVMESGAKGCE--------VVISGKLRAARAKSMKFVDGFMIHSGQPAKEYIDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIM EWD GK GP PLPDLVTI P +E P + ++
Sbjct: 173 RHVLLRQGVLGIKVKIMQEWDPSGKTGPKKPLPDLVTILEPKDDEPTPVPVSVST 227
>gi|155369251|ref|NP_001094409.1| 40S ribosomal protein S3-A [Xenopus laevis]
gi|133940|sp|P02350.2|RS31_XENLA RecName: Full=40S ribosomal protein S3-A; AltName: Full=S1A
gi|65091|emb|CAA40592.1| ribosomal protein S1a [Xenopus laevis]
gi|27769401|gb|AAH42230.1| Ribosomal protein S1a protein [Xenopus laevis]
Length = 246
Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224
>gi|387018380|gb|AFJ51308.1| 40S ribosomal protein S3-like [Crotalus adamanteus]
Length = 243
Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEASVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 224
>gi|37595356|gb|AAQ94564.1| ribosomal protein S3 [Danio rerio]
Length = 245
Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEVL--PTTPVS 224
>gi|71895095|ref|NP_001026007.1| 40S ribosomal protein S3 [Gallus gallus]
gi|53133686|emb|CAG32172.1| hypothetical protein RCJMB04_19g1 [Gallus gallus]
Length = 244
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/225 (82%), Positives = 192/225 (85%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDTSGKIGPKKPLPDHVSIVEPKEEI 217
>gi|108709466|gb|ABF97261.1| 40S ribosomal protein S3, putative, expressed [Oryza sativa
Japonica Group]
Length = 205
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 183/206 (88%), Positives = 188/206 (91%), Gaps = 8/206 (3%)
Query: 24 VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF FPEN
Sbjct: 1 MLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENG 60
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCE
Sbjct: 61 VELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE-------- 112
Query: 144 VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQK 203
VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML+WD K
Sbjct: 113 VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLDWDPK 172
Query: 204 GKQGPTTPLPDLVTIHPLKEEVYVAP 229
GK GPTTPLPDLVTIH KEE + P
Sbjct: 173 GKVGPTTPLPDLVTIHAPKEEEELRP 198
>gi|348522975|ref|XP_003448999.1| PREDICTED: 40S ribosomal protein S3-like [Oreochromis niloticus]
Length = 245
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEETL--PTTPMS 224
>gi|308323395|gb|ADO28834.1| 40S ribosomal protein s3 [Ictalurus punctatus]
Length = 245
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPVS 224
>gi|27735393|gb|AAH41299.1| Rpls3-b protein [Xenopus laevis]
gi|213626632|gb|AAI69756.1| Rpls3-b protein [Xenopus laevis]
gi|213627669|gb|AAI69758.1| Rpls3-b protein [Xenopus laevis]
Length = 246
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224
>gi|295314928|gb|ADF97614.1| ribosomal protein S3B [Hypophthalmichthys molitrix]
Length = 245
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEVL--PTTPVS 224
>gi|417409029|gb|JAA51041.1| Putative 40s ribosomal protein s3, partial [Desmodus rotundus]
Length = 251
Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 9 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 68
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 69 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 128
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 129 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 180
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 181 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 232
>gi|328683380|emb|CBL52984.1| ribosomal protein S3 [Plecoglossus altivelis]
Length = 245
Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MATQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGTVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEETL--PTTPMS 224
>gi|392881646|gb|AFM89655.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 188/234 (80%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|149068848|gb|EDM18400.1| rCG40478, isoform CRA_j [Rattus norvegicus]
Length = 277
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|6755372|ref|NP_036182.1| 40S ribosomal protein S3 [Mus musculus]
gi|57164151|ref|NP_001009239.1| 40S ribosomal protein S3 [Rattus norvegicus]
gi|57102362|ref|XP_534008.1| PREDICTED: 40S ribosomal protein S3 isoform 1 [Canis lupus
familiaris]
gi|149719291|ref|XP_001494894.1| PREDICTED: 40S ribosomal protein S3-like [Equus caballus]
gi|291384249|ref|XP_002708735.1| PREDICTED: ribosomal protein S3-like [Oryctolagus cuniculus]
gi|301759004|ref|XP_002915347.1| PREDICTED: 40S ribosomal protein S3-like [Ailuropoda melanoleuca]
gi|344296780|ref|XP_003420081.1| PREDICTED: 40S ribosomal protein S3-like [Loxodonta africana]
gi|348555219|ref|XP_003463421.1| PREDICTED: 40S ribosomal protein S3-like [Cavia porcellus]
gi|410972647|ref|XP_003992770.1| PREDICTED: 40S ribosomal protein S3 [Felis catus]
gi|51703302|sp|P62909.1|RS3_RAT RecName: Full=40S ribosomal protein S3
gi|51703309|sp|P62908.1|RS3_MOUSE RecName: Full=40S ribosomal protein S3
gi|325530283|sp|E2RH47.1|RS3_CANFA RecName: Full=40S ribosomal protein S3
gi|57728|emb|CAA35916.1| unnamed protein product [Rattus rattus]
gi|439522|emb|CAA54167.1| ribosomal protein S3 [Mus musculus]
gi|12833687|dbj|BAB22624.1| unnamed protein product [Mus musculus]
gi|12846127|dbj|BAB27042.1| unnamed protein product [Mus musculus]
gi|12848850|dbj|BAB28111.1| unnamed protein product [Mus musculus]
gi|14715107|gb|AAH10721.1| Ribosomal protein S3 [Mus musculus]
gi|15421127|gb|AAK95377.1| ribosomal protein S3 [Mus musculus]
gi|26341816|dbj|BAC34570.1| unnamed protein product [Mus musculus]
gi|56970487|gb|AAH88450.1| Ribosomal protein S3 [Rattus norvegicus]
gi|74137630|dbj|BAE35844.1| unnamed protein product [Mus musculus]
gi|74138495|dbj|BAE38059.1| unnamed protein product [Mus musculus]
gi|74146996|dbj|BAE27438.1| unnamed protein product [Mus musculus]
gi|74177801|dbj|BAE38991.1| unnamed protein product [Mus musculus]
gi|74190989|dbj|BAE39337.1| unnamed protein product [Mus musculus]
gi|74191087|dbj|BAE39379.1| unnamed protein product [Mus musculus]
gi|74195112|dbj|BAE28299.1| unnamed protein product [Mus musculus]
gi|74197190|dbj|BAE35140.1| unnamed protein product [Mus musculus]
gi|74211022|dbj|BAE37615.1| unnamed protein product [Mus musculus]
gi|74223053|dbj|BAE40668.1| unnamed protein product [Mus musculus]
gi|148684445|gb|EDL16392.1| ribosomal protein S3, isoform CRA_g [Mus musculus]
gi|149068850|gb|EDM18402.1| rCG40478, isoform CRA_l [Rattus norvegicus]
gi|327239238|gb|AEA39486.1| ribosomal protein S3 [Ailuropoda melanoleuca]
gi|327239330|gb|AEA39532.1| ribosomal protein S3 [Ailuropoda melanoleuca]
gi|431838442|gb|ELK00374.1| 40S ribosomal protein S3 [Pteropus alecto]
gi|444731541|gb|ELW71894.1| 40S ribosomal protein S3 [Tupaia chinensis]
Length = 243
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|410909578|ref|XP_003968267.1| PREDICTED: 40S ribosomal protein S3-like [Takifugu rubripes]
Length = 245
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 224
>gi|126327841|ref|XP_001362617.1| PREDICTED: 40S ribosomal protein S3-like [Monodelphis domestica]
Length = 243
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|351696964|gb|EHA99882.1| 40S ribosomal protein S3 [Heterocephalus glaber]
Length = 243
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392873570|gb|AFM85617.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392873790|gb|AFM85727.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392874028|gb|AFM85846.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392874738|gb|AFM86201.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392874910|gb|AFM86287.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392875972|gb|AFM86818.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392876244|gb|AFM86954.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392876330|gb|AFM86997.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392876834|gb|AFM87249.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392879612|gb|AFM88638.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392881068|gb|AFM89366.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392881436|gb|AFM89550.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392882158|gb|AFM89911.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392882756|gb|AFM90210.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392884244|gb|AFM90954.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|12848978|dbj|BAB28159.1| unnamed protein product [Mus musculus]
Length = 243
Score = 363 bits (932), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVGPKDEIL--PTTPIS 224
>gi|60652571|gb|AAX28980.1| ribosomal protein S3 [synthetic construct]
Length = 244
Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|432889332|ref|XP_004075224.1| PREDICTED: 40S ribosomal protein S3-like [Oryzias latipes]
Length = 245
Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 188/243 (77%), Positives = 199/243 (81%), Gaps = 12/243 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT---ATSIE 236
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I P +E + AP + E
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEESLPTAPISEQKGAKPE 232
Query: 237 LPV 239
+PV
Sbjct: 233 VPV 235
>gi|392873892|gb|AFM85778.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|209733852|gb|ACI67795.1| 40S ribosomal protein S3 [Salmo salar]
Length = 250
Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/230 (80%), Positives = 193/230 (83%), Gaps = 9/230 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 6 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 65
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 66 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 125
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 126 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 177
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I P E+V P
Sbjct: 178 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEQVPSTP 227
>gi|148684442|gb|EDL16389.1| ribosomal protein S3, isoform CRA_d [Mus musculus]
Length = 251
Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|225707598|gb|ACO09645.1| 40S ribosomal protein S3 [Osmerus mordax]
Length = 245
Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEETL--PTTPMS 224
>gi|15718687|ref|NP_000996.2| 40S ribosomal protein S3 isoform 1 [Homo sapiens]
gi|77404290|ref|NP_001029219.1| 40S ribosomal protein S3 [Bos taurus]
gi|113205854|ref|NP_001038066.1| 40S ribosomal protein S3 [Sus scrofa]
gi|293331917|ref|NP_001168943.1| uncharacterized protein LOC100382757 [Zea mays]
gi|354622982|ref|NP_001238928.1| 40S ribosomal protein S3 [Pan troglodytes]
gi|378548190|ref|NP_001243731.1| 40S ribosomal protein S3 isoform 1 [Homo sapiens]
gi|388453034|ref|NP_001253219.1| 40S ribosomal protein S3 [Macaca mulatta]
gi|395814830|ref|XP_003780943.1| PREDICTED: 40S ribosomal protein S3 isoform 1 [Otolemur garnettii]
gi|395814832|ref|XP_003780944.1| PREDICTED: 40S ribosomal protein S3 isoform 2 [Otolemur garnettii]
gi|395814834|ref|XP_003780945.1| PREDICTED: 40S ribosomal protein S3 isoform 3 [Otolemur garnettii]
gi|395814836|ref|XP_003780946.1| PREDICTED: 40S ribosomal protein S3 isoform 4 [Otolemur garnettii]
gi|397487317|ref|XP_003814749.1| PREDICTED: 40S ribosomal protein S3 isoform 1 [Pan paniscus]
gi|397487319|ref|XP_003814750.1| PREDICTED: 40S ribosomal protein S3 isoform 2 [Pan paniscus]
gi|402894681|ref|XP_003910477.1| PREDICTED: 40S ribosomal protein S3 [Papio anubis]
gi|403262289|ref|XP_003923526.1| PREDICTED: 40S ribosomal protein S3 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403262291|ref|XP_003923527.1| PREDICTED: 40S ribosomal protein S3 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403262293|ref|XP_003923528.1| PREDICTED: 40S ribosomal protein S3 isoform 3 [Saimiri boliviensis
boliviensis]
gi|426245151|ref|XP_004016377.1| PREDICTED: 40S ribosomal protein S3 [Ovis aries]
gi|417719|sp|P23396.2|RS3_HUMAN RecName: Full=40S ribosomal protein S3
gi|91207641|sp|Q3T169.1|RS3_BOVIN RecName: Full=40S ribosomal protein S3
gi|115502828|sp|Q0Z8U2.1|RS3_PIG RecName: Full=40S ribosomal protein S3
gi|187609257|pdb|2ZKQ|CC Chain c, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
gi|555941|gb|AAB60336.1| ribosomal protein S3 [Homo sapiens]
gi|555943|gb|AAB60337.1| ribosomal protein S3 [Homo sapiens]
gi|555945|gb|AAB60338.1| ribosomal protein S3 [Homo sapiens]
gi|13111933|gb|AAH03137.1| Ribosomal protein S3 [Homo sapiens]
gi|17932970|dbj|BAB79476.1| ribosomal protein S3 [Homo sapiens]
gi|21707655|gb|AAH34149.1| Ribosomal protein S3 [Homo sapiens]
gi|48734761|gb|AAH71917.1| Ribosomal protein S3 [Homo sapiens]
gi|54781367|gb|AAV40835.1| ribosomal protein S3 [Homo sapiens]
gi|72679750|gb|AAI00285.1| Ribosomal protein S3 [Homo sapiens]
gi|74268226|gb|AAI02091.1| Ribosomal protein S3 [Bos taurus]
gi|110006645|gb|ABG48767.1| ribosomal protein S3 [Sus scrofa]
gi|119595369|gb|EAW74963.1| ribosomal protein S3 [Homo sapiens]
gi|123987601|gb|ABM83814.1| ribosomal protein S3 [synthetic construct]
gi|123999104|gb|ABM87135.1| ribosomal protein S3 [synthetic construct]
gi|189053630|dbj|BAG35882.1| unnamed protein product [Homo sapiens]
gi|208967330|dbj|BAG73679.1| ribosomal protein S3 [synthetic construct]
gi|223973891|gb|ACN31133.1| unknown [Zea mays]
gi|296479794|tpg|DAA21909.1| TPA: 40S ribosomal protein S3 [Bos taurus]
gi|387542628|gb|AFJ71941.1| 40S ribosomal protein S3 [Macaca mulatta]
gi|440899677|gb|ELR50946.1| 40S ribosomal protein S3 [Bos grunniens mutus]
Length = 243
Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|223646682|gb|ACN10099.1| 40S ribosomal protein S3 [Salmo salar]
gi|223672531|gb|ACN12447.1| 40S ribosomal protein S3 [Salmo salar]
Length = 245
Score = 362 bits (930), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 185/230 (80%), Positives = 193/230 (83%), Gaps = 9/230 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I P E+V P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEQVPSTP 222
>gi|255081971|ref|XP_002508204.1| predicted protein [Micromonas sp. RCC299]
gi|226523480|gb|ACO69462.1| predicted protein [Micromonas sp. RCC299]
Length = 233
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 180/221 (81%), Positives = 193/221 (87%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
ISKKRKFVADGVFFAELNE+L RELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKG
Sbjct: 5 NISKKRKFVADGVFFAELNELLIRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKG 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS+VQKRF F E SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVL
Sbjct: 65 RRIRELTSLVQKRFGFAEGSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVL 124
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIME+GAKG E V+VSGKLR QR K+MKFKDGYMISSG PV EYI+SA HV
Sbjct: 125 RFIMENGAKGAE--------VVVSGKLRGQRGKAMKFKDGYMISSGNPVREYIESACLHV 176
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LLRQG +G+KVKIML+WD KG+ GP TP+PD VTIH K+E
Sbjct: 177 LLRQGCVGVKVKIMLDWDPKGRTGPKTPIPDTVTIHNPKDE 217
>gi|124300789|dbj|BAF45890.1| ribosomal protein S3 [Solea senegalensis]
Length = 245
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/224 (82%), Positives = 191/224 (85%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>gi|2500399|sp|P79891.1|RS3_AMBME RecName: Full=40S ribosomal protein S3
gi|1836060|gb|AAB46849.1| ribosomal protein S3 [Ambystoma mexicanum]
Length = 253
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392876674|gb|AFM87169.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/225 (81%), Positives = 192/225 (85%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
>gi|392875182|gb|AFM86423.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392876076|gb|AFM86870.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392876116|gb|AFM86890.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392877034|gb|AFM87349.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392877852|gb|AFM87758.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392878058|gb|AFM87861.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392878198|gb|AFM87931.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392878664|gb|AFM88164.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392880050|gb|AFM88857.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392880832|gb|AFM89248.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392881218|gb|AFM89441.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392881252|gb|AFM89458.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392881368|gb|AFM89516.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
gi|392883684|gb|AFM90674.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 184/225 (81%), Positives = 192/225 (85%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
>gi|392873640|gb|AFM85652.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 362 bits (929), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKV+IML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVRIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392881092|gb|AFM89378.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRE T+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIREFTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|319004942|ref|NP_001187068.1| 40S ribosomal protein S3 [Ictalurus punctatus]
gi|22001962|sp|Q90YS2.1|RS3_ICTPU RecName: Full=40S ribosomal protein S3
gi|15294015|gb|AAK95184.1|AF402810_1 40S ribosomal protein S3 [Ictalurus punctatus]
Length = 245
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FP SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPVS 224
>gi|74219656|dbj|BAE29595.1| unnamed protein product [Mus musculus]
Length = 243
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQ+RF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQERFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|7765076|gb|AAB19349.2| S3 ribosomal protein [Homo sapiens]
Length = 243
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISK+RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|41056077|ref|NP_957447.1| 40S ribosomal protein S3 [Danio rerio]
gi|28374213|gb|AAH45902.1| Ribosomal protein S3 [Danio rerio]
gi|182891740|gb|AAI65099.1| Rps3 protein [Danio rerio]
Length = 245
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/225 (81%), Positives = 191/225 (84%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGGVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEV 217
>gi|392873496|gb|AFM85580.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSM+F DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMEFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|197632571|gb|ACH71009.1| ribosomal protein S3-2 [Salmo salar]
gi|209732816|gb|ACI67277.1| 40S ribosomal protein S3 [Salmo salar]
gi|223647360|gb|ACN10438.1| 40S ribosomal protein S3 [Salmo salar]
Length = 245
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 196/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG++GCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSRGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P+T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--LVPSTPIS 224
>gi|147903619|ref|NP_001085315.1| 40S ribosomal protein S3-B [Xenopus laevis]
gi|1350988|sp|P47835.1|RS32_XENLA RecName: Full=40S ribosomal protein S3-B; AltName: Full=S1B
gi|587600|emb|CAA84291.1| ribosomal protein S1 [Xenopus laevis]
gi|587602|emb|CAA84290.1| ribosomal protein [Xenopus laevis]
Length = 246
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224
>gi|392880950|gb|AFM89307.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII A RTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILAARTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|74222288|dbj|BAE26946.1| unnamed protein product [Mus musculus]
Length = 243
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F ELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKVELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGC KV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGC--------KVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392873614|gb|AFM85639.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PV+ Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVSYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|209732420|gb|ACI67079.1| 40S ribosomal protein S3 [Salmo salar]
Length = 245
Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGNVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E P+T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDETI--PSTPVS 224
>gi|197101391|ref|NP_001127020.1| 40S ribosomal protein S3 [Pongo abelii]
gi|75061590|sp|Q5R465.1|RS3_PONAB RecName: Full=40S ribosomal protein S3
gi|55733547|emb|CAH93451.1| hypothetical protein [Pongo abelii]
gi|62897657|dbj|BAD96768.1| ribosomal protein S3 variant [Homo sapiens]
Length = 243
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAE+V RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|197632569|gb|ACH71008.1| ribosomal protein S3-1 [Salmo salar]
gi|209738348|gb|ACI70043.1| 40S ribosomal protein S3 [Salmo salar]
Length = 245
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGNVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E P+T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDETI--PSTPVS 224
>gi|70909551|emb|CAJ17197.1| ribosomal protein S3e [Scarabaeus laticollis]
Length = 241
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/232 (78%), Positives = 194/232 (83%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT +SKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MATSVSKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPEHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+ + P E + + P++
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKTGPKRPLPDNVSVVEPKDEPLPLVPSS 224
>gi|46811251|gb|AAT01919.1| 40S ribosomal protein S3 [Pseudopleuronectes americanus]
Length = 246
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/224 (82%), Positives = 191/224 (85%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>gi|296217041|ref|XP_002754860.1| PREDICTED: 40S ribosomal protein S3-like isoform 1 [Callithrix
jacchus]
gi|390470016|ref|XP_003734218.1| PREDICTED: 40S ribosomal protein S3-like isoform 2 [Callithrix
jacchus]
gi|390470018|ref|XP_003734219.1| PREDICTED: 40S ribosomal protein S3-like isoform 3 [Callithrix
jacchus]
gi|390470020|ref|XP_003734220.1| PREDICTED: 40S ribosomal protein S3-like isoform 4 [Callithrix
jacchus]
Length = 243
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMES AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESSAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|32532|emb|CAA39248.1| unnamed protein product [Homo sapiens]
Length = 243
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAE LRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAECLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392875076|gb|AFM86370.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SV LYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVGLYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|13097759|gb|AAH03577.1| Unknown (protein for IMAGE:3544292), partial [Homo sapiens]
gi|15341992|gb|AAH13196.1| Unknown (protein for IMAGE:4347401), partial [Homo sapiens]
Length = 242
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/233 (79%), Positives = 194/233 (83%), Gaps = 10/233 (4%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGE
Sbjct: 1 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 60
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYG
Sbjct: 61 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYG 120
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVR
Sbjct: 121 VLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 172
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
HVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 HVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 223
>gi|392877392|gb|AFM87528.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFI ESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFITESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392881056|gb|AFM89360.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQK F FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKGFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|402913757|ref|XP_003919330.1| PREDICTED: 40S ribosomal protein S3-like [Papio anubis]
Length = 243
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEV VTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVLVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|260833516|ref|XP_002611703.1| hypothetical protein BRAFLDRAFT_56803 [Branchiostoma floridae]
gi|229297074|gb|EEN67713.1| hypothetical protein BRAFLDRAFT_56803 [Branchiostoma floridae]
Length = 226
Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/225 (80%), Positives = 191/225 (84%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQVSKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFGFAEGTVELYAEKVAQRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N Y+DSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPANSYVDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHV+LRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 RHVMLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKDEI 217
>gi|160550139|gb|ABX44774.1| putative 40S ribosomal protein RPS3 [Flustra foliacea]
Length = 234
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ+VLG
Sbjct: 1 MAAQVSKKRKFVNDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFNFPEGTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAK+MKF DG MI SG+P EY+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKAMKFVDGLMIHSGEPSREYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WDQ GK GP PLPD V I K+E PAT S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDQTGKIGPKKPLPDNVNIVEPKDE--STPATPYS 224
>gi|50344456|emb|CAH04314.1| S3e ribosomal protein [Carabus granulatus]
Length = 239
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/237 (76%), Positives = 196/237 (82%), Gaps = 9/237 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MTTTISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPEHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIEL 237
RHVLLRQGVLGIKVKIML WD GK GP PLPD V++ KEE+ + P + +++
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKIGPKRPLPDNVSVVEPKEEI-IPPFPQSDVKM 228
>gi|47211107|emb|CAF94963.1| unnamed protein product [Tetraodon nigroviridis]
Length = 245
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK P PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIVPKKPLPDHVSIVEPKEEIM--PTTPIS 224
>gi|223646268|gb|ACN09892.1| 40S ribosomal protein S3 [Salmo salar]
gi|223672115|gb|ACN12239.1| 40S ribosomal protein S3 [Salmo salar]
Length = 245
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPECNVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E P+T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDETI--PSTPVS 224
>gi|392877878|gb|AFM87771.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (924), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/218 (83%), Positives = 188/218 (86%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI 210
>gi|392873428|gb|AFM85546.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF PE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGSPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392880630|gb|AFM89147.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 183/225 (81%), Positives = 191/225 (84%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRK VADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKLVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
>gi|392878050|gb|AFM87857.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 183/225 (81%), Positives = 191/225 (84%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHV LRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 RHVSLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 217
>gi|225715464|gb|ACO13578.1| 40S ribosomal protein S3 [Esox lucius]
Length = 247
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 184/232 (79%), Positives = 193/232 (83%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RG CAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGPCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I P E+V P +
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEQVPSTPIS 224
>gi|156408429|ref|XP_001641859.1| predicted protein [Nematostella vectensis]
gi|156228999|gb|EDO49796.1| predicted protein [Nematostella vectensis]
Length = 240
Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 183/234 (78%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP+RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE SVELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG M+ +G+P Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHV LRQGVLGIKVKIML WD GK GP PLPD V+I K+E V PA TS
Sbjct: 173 RHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDE--VVPAQPTS 224
>gi|90080277|dbj|BAE89620.1| unnamed protein product [Macaca fascicularis]
Length = 243
Score = 358 bits (920), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK G PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGLKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|392875060|gb|AFM86362.1| 40S ribosomal protein S3-like protein [Callorhinchus milii]
Length = 245
Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRA Y
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRARY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|121511934|gb|ABM55418.1| 40S ribosomal protein S3 [Xenopsylla cheopis]
Length = 243
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 181/239 (75%), Positives = 197/239 (82%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T ISKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MTTAISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F +NSVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFNFIDNSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML +D GKQGP PLPD V+ + P +E + P++ + + P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPFDPAGKQGPKKPLPDNVSVVDPKEEPLPTMPSSESKVPKP 231
>gi|166952343|gb|ABZ04254.1| ribosomal protein rps3 [Lineus viridis]
Length = 213
Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/218 (82%), Positives = 188/218 (86%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQNVLG
Sbjct: 1 MATPISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATKTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE++VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPESTVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPTNDYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKLGPKRPLPDHVSI 210
>gi|355752470|gb|EHH56590.1| hypothetical protein EGM_06037 [Macaca fascicularis]
Length = 243
Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 184/234 (78%), Positives = 193/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAE+ YSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEECYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRR RELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRTRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|320163406|gb|EFW40305.1| ribosomal protein S3 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 181/230 (78%), Positives = 194/230 (84%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T +SKKRKFV DGVF AELNE LTRELAE+GYSGVEVRVTP RTEIIIRATRTQNVLGEK
Sbjct: 4 TPMSKKRKFVTDGVFRAELNEFLTRELAEEGYSGVEVRVTPTRTEIIIRATRTQNVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF FPENSVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFGFPENSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKG E V+VSGKLR QRAK+MKF+DG+M+ SG P YID AVRH
Sbjct: 124 LRFIMESGAKGVE--------VVVSGKLRGQRAKAMKFQDGFMVHSGFPTTYYIDRAVRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
VLLRQGVLG+KVKIML D G+ GP TPLPD+VTI P E + AP++
Sbjct: 176 VLLRQGVLGLKVKIMLAQDPTGRAGPKTPLPDIVTILEPKDEALPSAPSS 225
>gi|163658467|gb|ABY28373.1| ribosomal protein S3 [Oncorhynchus masou formosanus]
Length = 245
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/234 (78%), Positives = 193/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGV VRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVGVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGNVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMK DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKSVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E P+T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKEPLPDHVSIVEPKDETI--PSTPVS 224
>gi|443732033|gb|ELU16925.1| hypothetical protein CAPTEDRAFT_171942 [Capitella teleta]
Length = 242
Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/224 (80%), Positives = 189/224 (84%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVA+GVF AELNE TRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MATQISKKRKFVANGVFKAELNEFFTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFQEGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGNPTNDYVDKAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGI+VKIML WD GK GP PLPD V+I K+E
Sbjct: 173 RHVLLRQGVLGIQVKIMLPWDPTGKIGPKRPLPDHVSIVEPKDE 216
>gi|225714094|gb|ACO12893.1| 40S ribosomal protein S3 [Lepeophtheirus salmonis]
Length = 237
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/224 (79%), Positives = 191/224 (85%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+TQISKKRKFV+DGVF AELNE LTRELAEDGYSGVEV V P+RTEIII ATRTQNVLG
Sbjct: 1 MSTQISKKRKFVSDGVFKAELNEFLTRELAEDGYSGVEVHVAPLRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRIRELTSVVQKRF FPENSVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 DKGRRIRELTSVVQKRFSFPENSVELYAEKVAARGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRYIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAC 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML +D GK GP PLPD V++ KEE
Sbjct: 173 RHVLLRQGVLGIKVKIMLPFDVTGKSGPRKPLPDTVSVAEPKEE 216
>gi|386869503|ref|NP_001247435.1| 40S ribosomal protein S3 isoform 2 [Homo sapiens]
gi|397487321|ref|XP_003814751.1| PREDICTED: 40S ribosomal protein S3 isoform 3 [Pan paniscus]
Length = 259
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/250 (74%), Positives = 195/250 (78%), Gaps = 26/250 (10%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVE----------------LYAEKVNNRGLCAIAQAES 104
EKGRRIRELT+VVQKRF FPE SVE LYAEKV RGLCAIAQAES
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELKIMVMVTGYPLLPLKLYAEKVATRGLCAIAQAES 120
Query: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGY 164
LRYKLLGGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG
Sbjct: 121 LRYKLLGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGL 172
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E
Sbjct: 173 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 232
Query: 225 VYVAPATATS 234
+ P T S
Sbjct: 233 IL--PTTPIS 240
>gi|338726172|ref|XP_003365268.1| PREDICTED: 40S ribosomal protein S3-like [Equus caballus]
Length = 243
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 183/234 (78%), Positives = 192/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKR+FVA G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRQFVAHGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVAKRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF MESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFTMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
HVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 CHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|221126927|ref|XP_002162713.1| PREDICTED: 40S ribosomal protein S3-like [Hydra magnipapillata]
Length = 239
Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/231 (77%), Positives = 190/231 (82%), Gaps = 8/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA I+KK+KFV+DGVF AELNE L RELAEDGYSGVEVRVTP+RTEIII ATRTQNVLG
Sbjct: 1 MAAPITKKKKFVSDGVFKAELNEFLKRELAEDGYSGVEVRVTPLRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE SVELYAEKV RGLCAIAQ ESLRYKLL G VR+ACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPEGSVELYAEKVATRGLCAIAQCESLRYKLLAGAPVRKACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RFIMESGAKGCE VIVSGKLR QRAKSMKF DG+MI SG P+ EYID+AV
Sbjct: 121 GVVRFIMESGAKGCE--------VIVSGKLRGQRAKSMKFTDGFMIHSGYPIQEYIDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 231
RHV LRQGVLGIKVKIML WD GK GP PLPD V+I KEEV+ P +
Sbjct: 173 RHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKEEVFYPPTS 223
>gi|332220518|ref|XP_003259402.1| PREDICTED: 40S ribosomal protein S3-like isoform 2 [Nomascus
leucogenys]
gi|441635552|ref|XP_003259404.2| PREDICTED: 40S ribosomal protein S3-like isoform 4 [Nomascus
leucogenys]
gi|441635555|ref|XP_004089921.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635558|ref|XP_004089922.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635561|ref|XP_004089923.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635564|ref|XP_004089924.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635567|ref|XP_004089925.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635570|ref|XP_004089926.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
gi|441635573|ref|XP_004089927.1| PREDICTED: 40S ribosomal protein S3-like [Nomascus leucogenys]
Length = 243
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 181/234 (77%), Positives = 192/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M QISKKRKF+ADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MVVQISKKRKFIADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRI ELT+VVQKRF FPE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIPELTAVVQKRFGFPEGIVELYAEKVATRGLCAIAQAESLRYKLVGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFI+ESGAKGC KV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIIESGAKGC--------KVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|156553282|ref|XP_001599651.1| PREDICTED: 40S ribosomal protein S3-like [Nasonia vitripennis]
Length = 242
Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 180/239 (75%), Positives = 196/239 (82%), Gaps = 11/239 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEK
Sbjct: 4 TTISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPQRTEIILMATHTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF F ++SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNFKDHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N+Y+++A RH
Sbjct: 124 LRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATSI--ELP 238
VLLRQGVLGIKVKIML WD GK GP PLPD V + KEE +Y APA+ + +LP
Sbjct: 176 VLLRQGVLGIKVKIMLPWDPNGKNGPKKPLPDNVIVQEPKEETLYSAPASEAKVVKDLP 234
>gi|326533734|dbj|BAK05398.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 174/226 (76%), Positives = 191/226 (84%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ Q+SK+RKFVADGVF AE+NE TRELAE+GYSG EVRVT RTEIIIRAT TQ VLGE
Sbjct: 5 SAQLSKRRKFVADGVFNAEINEFFTRELAEEGYSGCEVRVTHARTEIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELTS+VQKRFKFPENS+ELYAEKV NRGL A+AQAESLRYKLLGGLAVRRACYG
Sbjct: 65 KGRRIRELTSLVQKRFKFPENSLELYAEKVQNRGLSAVAQAESLRYKLLGGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAK+MKF DG+MI SGQP +++D AVR
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKAMKFTDGFMIHSGQPARDFVDQAVR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM WD +GK GP+TPLPD +TI KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMKAWDPEGKLGPSTPLPDQITILDPKEEASV 222
>gi|198434172|ref|XP_002129244.1| PREDICTED: similar to putative 40S ribosomal protein RPS3 [Ciona
intestinalis]
Length = 260
Score = 352 bits (903), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/236 (75%), Positives = 193/236 (81%), Gaps = 9/236 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV DG+F AELNE+L RELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQISKKRKFVNDGLFKAELNELLWRELAEDGYSGVEVRVTPSRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKF ++ VELYAEKV NRGLCA AQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAMVQKRFKFKDDGVELYAEKVANRGLCATAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAK+MKF DG MI SG PV EY+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKAMKFVDGLMIHSGDPVREYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML WD +GK GP PLPD V I P EE P + + +
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPQGKIGPKKPLPDNVNIVEPKDEEAITGPRSESKV 228
>gi|149287156|gb|ABR23477.1| 40S ribosomal protein S3 [Ornithodoros parkeri]
Length = 240
Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 180/236 (76%), Positives = 194/236 (82%), Gaps = 9/236 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +QISKKRKFVADGVF AELNE L RELAEDGYSGVEVRVTP TEIII ATRTQ+VLG
Sbjct: 1 MTSQISKKRKFVADGVFKAELNEFLRRELAEDGYSGVEVRVTPQNTEIIILATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN+VELYAEKV +RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPENTVELYAEKVASRGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N+Y+++AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVETAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I P E + P + I
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKLGPKRPLPDHVSIVEPKPETLPTEPYSEPKI 228
>gi|72058324|ref|XP_798304.1| PREDICTED: 40S ribosomal protein S3-A-like [Strongylocentrotus
purpuratus]
Length = 279
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/224 (79%), Positives = 190/224 (84%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ+VLG
Sbjct: 1 MATQISKKRKFVADGVFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F EN+VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFNFAENTVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PV +Y+D A+
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGAPVKDYVDVAI 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHV+LRQGVLGIKVKIM +D GK GP PLPD+++I KEE
Sbjct: 173 RHVMLRQGVLGIKVKIMRPFDVTGKTGPKKPLPDVISISEPKEE 216
>gi|318087144|gb|ADV40164.1| ribosomal protein S3 [Latrodectus hesperus]
Length = 238
Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 180/228 (78%), Positives = 191/228 (83%), Gaps = 9/228 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISKKRKFVADGVF AELNE L RELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEK
Sbjct: 4 TTISKKRKFVADGVFKAELNEFLRRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF FPE SVELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNFPEGSVELYAEKVAARGLCAIAQCESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++AVRH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGNPTNDYVETAVRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
VLLRQGVLGIKVKIML WD GK GP PLPD V+I P +EE+ +P
Sbjct: 176 VLLRQGVLGIKVKIMLPWDPVGKIGPKNPLPDNVSITEPKEEELPQSP 223
>gi|145345927|ref|XP_001417450.1| Ribosomal protein S3, component of cytosolic 80S ribosome and 40S
small subunit [Ostreococcus lucimarinus CCE9901]
gi|144577677|gb|ABO95743.1| Ribosomal protein S3, component of cytosolic 80S ribosome and 40S
small subunit [Ostreococcus lucimarinus CCE9901]
Length = 231
Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 174/238 (73%), Positives = 196/238 (82%), Gaps = 9/238 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+AT ISKKRKFVADGVFFAELNE+L RELAEDGYSGVEVR TP+RTEIIIRATRT NVLG
Sbjct: 2 VATAISKKRKFVADGVFFAELNEMLVRELAEDGYSGVEVRQTPMRTEIIIRATRTANVLG 61
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQ+RF+ E SVELYAE+VNNRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 62 EKGRRIRELTTLVQRRFQMAEGSVELYAERVNNRGLCAIAQCESLRYKLLGGLAVRRACY 121
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IME+GAKG E V+VSGKLR QRAK+MKFKDGYMISSG PV EYI S
Sbjct: 122 GVLRYIMEAGAKGAE--------VVVSGKLRGQRAKAMKFKDGYMISSGNPVREYIVSCT 173
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIEL 237
RH LLRQG +G++VKIML+ D KG+ GP+TP+PD V IH P +E P +E+
Sbjct: 174 RHALLRQGTIGMRVKIMLDHDPKGRNGPSTPIPDTVVIHTPKDDEDMAKPYVGKEMEM 231
>gi|37724563|gb|AAO20336.1| ribosomal protein S3 [Hydra vulgaris]
Length = 238
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/230 (76%), Positives = 189/230 (82%), Gaps = 8/230 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A I+KK+KFV+DGVF AELNE L RELAEDGYSGVEVRVTP+RTEIII ATRTQNVLGE
Sbjct: 1 AAPITKKKKFVSDGVFKAELNEFLKRELAEDGYSGVEVRVTPLRTEIIILATRTQNVLGE 60
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELTSVVQKRF FPE SVELYAEKV RGLCAIAQ ESLRYKLL G VR+ACYG
Sbjct: 61 KGRRIRELTSVVQKRFNFPEGSVELYAEKVATRGLCAIAQCESLRYKLLAGAPVRKACYG 120
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
V+RFIMESGAKGCE VIVSGKLR QRAKSMKF DG+MI SG P+ EYID+AVR
Sbjct: 121 VVRFIMESGAKGCE--------VIVSGKLRGQRAKSMKFTDGFMIHSGYPIQEYIDTAVR 172
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 231
HV LRQGVLGIKVKIML WD GK GP PLPD V+I KEEV+ P +
Sbjct: 173 HVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKEEVFYPPTS 222
>gi|242005202|ref|XP_002423460.1| 40S ribosomal protein S3, putative [Pediculus humanus corporis]
gi|212506548|gb|EEB10722.1| 40S ribosomal protein S3, putative [Pediculus humanus corporis]
Length = 238
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/225 (78%), Positives = 188/225 (83%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ+VLG
Sbjct: 1 MATPISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KG+RIRELTSVVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 DKGKRIRELTSVVQKRFNFPEGTVELYAEKVAARGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N+Y+D A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVDCAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML D GK GP PLPD V + KEE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLRCDPNGKVGPKKPLPDCVEVPGPKEEI 217
>gi|288869512|ref|NP_001165863.1| ribosomal protein S3 [Tribolium castaneum]
gi|270006106|gb|EFA02554.1| hypothetical protein TcasGA2_TC008261 [Tribolium castaneum]
Length = 241
Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 190/234 (81%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEIII ATRT VLG
Sbjct: 1 MATPISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPTRTEIIIMATRTDRVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EK RRIRELTSVVQKRF FPENSV LY EKV NRGLCAIAQAESLR+KL+GGLAVRRACY
Sbjct: 61 EKNRRIRELTSVVQKRFNFPENSVVLYGEKVANRGLCAIAQAESLRFKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IME GAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRYIMECGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V++ KEE+ PA +S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKTGPKKPLPDNVSVVEPKEEIL--PAYPSS 224
>gi|449885323|gb|AGF29412.1| ribosomal protein S3 [Phaedon cochleariae]
Length = 240
Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 175/225 (77%), Positives = 186/225 (82%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEIII ATRT VLG
Sbjct: 1 MATTISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPTRTEIIIMATRTDRVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EK RRIRELTSVVQKRF FPENSV LY EKV NRGLCAIAQAESLR+KL+GGLAVRRACY
Sbjct: 61 EKNRRIRELTSVVQKRFNFPENSVVLYGEKVANRGLCAIAQAESLRFKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IME GAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRYIMECGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V++ KEE+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKTGPKKPLPDNVSVVEPKEEI 217
>gi|412989948|emb|CCO20590.1| 40S ribosomal protein S3 [Bathycoccus prasinos]
Length = 233
Score = 349 bits (896), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 179/233 (76%), Positives = 194/233 (83%), Gaps = 13/233 (5%)
Query: 1 MATQ-----ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRT 55
M TQ ISKKRKFVADGVFFAELNE+L RELAEDGYSGVEVR TPV+ EIIIRATRT
Sbjct: 1 MTTQASSLNISKKRKFVADGVFFAELNEMLVRELAEDGYSGVEVRSTPVKMEIIIRATRT 60
Query: 56 QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV 115
QNVLGEKGRRIRELTS+VQKRF F E +VELYAEKV NRGLCAI+Q ESLRYKLLGGLAV
Sbjct: 61 QNVLGEKGRRIRELTSLVQKRFGFAEGAVELYAEKVANRGLCAISQCESLRYKLLGGLAV 120
Query: 116 RRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEY 175
RRACYGVLRFIME+GAKG E VIVSGKLR QRAK+MKFKDGYMISSG PV EY
Sbjct: 121 RRACYGVLRFIMENGAKGAE--------VIVSGKLRGQRAKAMKFKDGYMISSGNPVREY 172
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
I S+ RHVLLRQGV+GIKVKIML+ D KG+ GP TP+PD + I KE+ +A
Sbjct: 173 IVSSTRHVLLRQGVVGIKVKIMLDHDPKGRMGPKTPIPDTIIIKEPKEDENMA 225
>gi|148684443|gb|EDL16390.1| ribosomal protein S3, isoform CRA_e [Mus musculus]
Length = 243
Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 181/234 (77%), Positives = 190/234 (81%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RH + VLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHPSVPFSVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|358056010|dbj|GAA98355.1| hypothetical protein E5Q_05041 [Mixia osmundae IAM 14324]
Length = 270
Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 191/232 (82%), Gaps = 8/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+T ISK+RKFVADGVF+AEL+E TREL+ +GYSG EVRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSTTISKRRKFVADGVFYAELSEFFTRELSSEGYSGCEVRVTRARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKF E SVELYAEKV NRGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFGEGSVELYAEKVQNRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDQAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATA 232
RHVLLRQGVLGIKVKIM WD +G+ GP+ PLPD VTI KEE V P ++
Sbjct: 173 RHVLLRQGVLGIKVKIMKGWDPEGRTGPSKPLPDSVTIMDAKEEAPVGPPSS 224
>gi|321464706|gb|EFX75712.1| hypothetical protein DAPPUDRAFT_306633 [Daphnia pulex]
Length = 242
Score = 348 bits (894), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 179/229 (78%), Positives = 190/229 (82%), Gaps = 9/229 (3%)
Query: 1 MAT-QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MAT QISKKRKFVA GVF AELN LTRELAEDGYSGVEVR+ P RTEIII ATRTQNVL
Sbjct: 1 MATAQISKKRKFVAGGVFKAELNAFLTRELAEDGYSGVEVRLAPTRTEIIILATRTQNVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GEKGRRIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRAC
Sbjct: 61 GEKGRRIRELTSVVQKRFGFQEGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N Y+D+A
Sbjct: 121 YGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNVYVDTA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
VRHVLLRQGVLGIKVKIML WD K GP PLPD V+I K+E ++A
Sbjct: 173 VRHVLLRQGVLGIKVKIMLPWDPNNKNGPKRPLPDNVSILEPKDETHIA 221
>gi|121543809|gb|ABM55569.1| putative ribosomal protein S3 [Maconellicoccus hirsutus]
Length = 248
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 184/218 (84%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +SKKRKFVADGVF AELNE L RELAEDGYSGV++RVTP RTEIII ATRTQNVLG
Sbjct: 1 MTRTVSKKRKFVADGVFKAELNEFLMRELAEDGYSGVQIRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFP+ S+ELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFKFPDGSIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P +Y+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPCVDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIML WD GK GP PLPD V +
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKNGPKKPLPDNVNV 210
>gi|28630346|gb|AAN77894.1| ribosomal protein S3 [Petromyzon marinus]
Length = 206
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/208 (83%), Positives = 181/208 (87%), Gaps = 8/208 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKK+KFVADGVF AE+NE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MATQMSKKKKFVADGVFKAEMNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSV+QKRF FPE SVELYAEKV NRGLCAIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVIQKRFNFPEGSVELYAEKVANRGLCAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+A+
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNHYVDTAI 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGP 208
RHVLLRQG LGIKVKIML WD GK GP
Sbjct: 173 RHVLLRQGGLGIKVKIMLPWDTTGKMGP 200
>gi|118793920|ref|XP_321155.3| AGAP001910-PA [Anopheles gambiae str. PEST]
gi|116116043|gb|EAA01737.4| AGAP001910-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/239 (73%), Positives = 193/239 (80%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +SKKR+FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MYNTVSKKRRFVANGMFHAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VV+KRF F SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVRKRFGFAPGSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+ + P E +Y +P + ++P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSSPRSEPKFKVP 231
>gi|112984112|ref|NP_001037253.1| ribosomal protein S3 [Bombyx mori]
gi|54609285|gb|AAV34858.1| ribosomal protein S3 [Bombyx mori]
Length = 243
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/230 (75%), Positives = 189/230 (82%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + P E V + P +
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 225
>gi|395521196|ref|XP_003764704.1| PREDICTED: 40S ribosomal protein S3 [Sarcophilus harrisii]
Length = 245
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 178/225 (79%), Positives = 187/225 (83%), Gaps = 10/225 (4%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIREL
Sbjct: 12 QFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIREL 71
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
T+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES
Sbjct: 72 TAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 131
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
GAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGV
Sbjct: 132 GAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGV 183
Query: 190 LGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 184 LGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 226
>gi|389608265|dbj|BAM17744.1| ribosomal protein S3 [Papilio xuthus]
Length = 244
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/239 (73%), Positives = 190/239 (79%), Gaps = 9/239 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATSIELPVA 240
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + P E + P + P A
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPIPTEPTSDVRSIAPTA 234
>gi|1350990|sp|P48153.1|RS3_MANSE RecName: Full=40S ribosomal protein S3
gi|527680|gb|AAB05575.1| ribosomal protein S3 [Manduca sexta]
Length = 243
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/232 (75%), Positives = 189/232 (81%), Gaps = 10/232 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E AP TS
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225
>gi|357611706|gb|EHJ67618.1| 40S ribosomal protein S3 [Danaus plexippus]
Length = 245
Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/232 (75%), Positives = 190/232 (81%), Gaps = 10/232 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEHSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E AP TS
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225
>gi|332375642|gb|AEE62962.1| unknown [Dendroctonus ponderosae]
Length = 232
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 176/240 (73%), Positives = 192/240 (80%), Gaps = 9/240 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEIII ATRT VLG
Sbjct: 1 MATTISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPTRTEIIIMATRTDRVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EK RRIRELTSVVQKRF FPENS+ LY EKV NRGLCAIAQAESLR+KL+GGLAVRRACY
Sbjct: 61 EKNRRIRELTSVVQKRFNFPENSIVLYGEKVANRGLCAIAQAESLRFKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IME GAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRYIMECGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELPV 239
RHVLLRQGVLGIKVKIML +D GK GP PLPD V+ + P E V P++ ++PV
Sbjct: 173 RHVLLRQGVLGIKVKIMLPYDPTGKIGPKKPLPDNVSVVEPKDEVVPTVPSSEIKADVPV 232
>gi|315115341|gb|ADT80643.1| ribosomal protein S3 [Euphydryas aurinia]
Length = 243
Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 174/230 (75%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + P E V + P +
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 225
>gi|389610621|dbj|BAM18922.1| ribosomal protein S3 [Papilio polytes]
Length = 244
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 172/222 (77%), Positives = 186/222 (83%), Gaps = 8/222 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 217
>gi|16566719|gb|AAL26578.1|AF429976_1 ribosomal protein S3 [Spodoptera frugiperda]
Length = 243
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 174/230 (75%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPERSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + P E V + P +
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 225
>gi|281353139|gb|EFB28723.1| hypothetical protein PANDA_003327 [Ailuropoda melanoleuca]
Length = 233
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 178/224 (79%), Positives = 186/224 (83%), Gaps = 10/224 (4%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 1 FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 61 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
GIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 GIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 214
>gi|342356327|gb|AEL28822.1| ribosomal protein S3 [Heliconius melpomene cythera]
Length = 242
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 189/232 (81%), Gaps = 10/232 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E P+ TS
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PVPSEPTS 225
>gi|62645168|ref|XP_575143.1| PREDICTED: 40S ribosomal protein S3-like [Rattus norvegicus]
gi|109470011|ref|XP_001057158.1| PREDICTED: 40S ribosomal protein S3-like [Rattus norvegicus]
Length = 243
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 180/234 (76%), Positives = 191/234 (81%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYS VEVRVTP RTEIII TRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSRVEVRVTPTRTEIIILGTRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQK+F FPE SVELYAEKV GLCAIAQAESL YKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKQFVFPEGSVELYAEKVATGGLCAIAQAESLCYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGA+GCE V+VSGKLR QRAKS+KF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAEGCE--------VVVSGKLRGQRAKSVKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>gi|264667327|gb|ACY71249.1| ribosomal protein S3 [Chrysomela tremula]
Length = 240
Score = 345 bits (886), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 173/225 (76%), Positives = 184/225 (81%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEIII ATRT VLG
Sbjct: 1 MATTISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPTRTEIIIMATRTDRVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EK RRIRELTSVVQKRF FPE SV LY EKV NRGLCAIAQAESLR+KL+GGLAVRRACY
Sbjct: 61 EKNRRIRELTSVVQKRFNFPEGSVVLYGEKVANRGLCAIAQAESLRFKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR+IME GAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+D+A
Sbjct: 121 GVLRYIMECGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLLRQGVLGIKVKIML WD GK GP PLPD V + K+E+
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDATGKTGPKKPLPDNVAVAEPKDEI 217
>gi|70906311|gb|AAZ14891.1| ribosomal protein S3 [Aedes albopictus]
Length = 243
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 175/230 (76%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +SKKR+FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MYNAVSKKRRFVANGMFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFAPGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+ + P E +Y P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSTP 222
>gi|442755587|gb|JAA69953.1| Putative 40s ribosomal protein s3 [Ixodes ricinus]
Length = 243
Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 177/224 (79%), Positives = 188/224 (83%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFVADGVF AELNE L RELAEDGYSGVEVRVTP TEIII ATRTQ+VLG
Sbjct: 1 MANPISKKRKFVADGVFKAELNEFLRRELAEDGYSGVEVRVTPQNTEIIILATRTQSVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE +VELYAEKV +RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPEGTVELYAEKVASRGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P N+Y+++AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVETAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIML D GK GP PLPD VTI K+E
Sbjct: 173 RHVLLRQGVLGIKVKIMLPCDPNGKLGPKKPLPDHVTIMEPKKE 216
>gi|44967154|gb|AAS49565.1| ribosomal protein S3 [Latimeria chalumnae]
Length = 211
Score = 345 bits (885), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 175/215 (81%), Positives = 183/215 (85%), Gaps = 8/215 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 1 FVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 61 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GIKVKIML WD GK GP PLPD V+I KEE+
Sbjct: 173 GIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEI 207
>gi|157118129|ref|XP_001659022.1| 40S ribosomal protein S3 [Aedes aegypti]
gi|70906313|gb|AAZ14892.1| ribosomal protein S3 [Aedes aegypti]
gi|108875827|gb|EAT40052.1| AAEL008192-PA [Aedes aegypti]
Length = 243
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 175/230 (76%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +SKKR+FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MYNAVSKKRRFVANGMFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFAPGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+ + P E +Y P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSTP 222
>gi|62083397|gb|AAX62423.1| ribosomal protein S3 [Lysiphlebus testaceipes]
Length = 234
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/228 (75%), Positives = 190/228 (83%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 8 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIILMATHTQSVLGEKGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF F + +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 68 RIRELTSVVQKRFGFKDGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P +Y+D+A RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTADYVDTATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
LRQGVLGIKVKIML WDQ GK GP PLPD V++ P +E + + P++
Sbjct: 180 LRQGVLGIKVKIMLPWDQNGKTGPKKPLPDNVSVAEPKEENIPLMPSS 227
>gi|116090821|gb|ABJ55992.1| ribosomal protein S3 [Ostrinia nubilalis]
Length = 241
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/222 (77%), Positives = 185/222 (83%), Gaps = 8/222 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 217
>gi|170057463|ref|XP_001864493.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
gi|167876891|gb|EDS40274.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
Length = 250
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/230 (76%), Positives = 188/230 (81%), Gaps = 9/230 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +SKKR+FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MYNVVSKKRRFVANGMFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFAPGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+ + P E +Y P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSTP 222
>gi|452821888|gb|EME28913.1| 40S ribosomal protein S3e [Galdieria sulphuraria]
Length = 227
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/224 (75%), Positives = 194/224 (86%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT +SKKR+ VADGVF AELNE L REL+E+GYSGVEV+ TP+RTEI+IRATRTQNVLG
Sbjct: 1 MATLMSKKRRAVADGVFKAELNEFLMRELSEEGYSGVEVKPTPLRTEIVIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF+FPE +VELYAEKV +RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFRFPEGTVELYAEKVADRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGC V VSG LRAQRAK+MKF DGYM+ SGQPV +Y+D+AV
Sbjct: 121 GVLRFVMESGAKGC--------VVTVSGLLRAQRAKTMKFTDGYMVHSGQPVKDYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVL+RQGVLGIKV IML +D +GK+GP+ PLPD V I+ KE+
Sbjct: 173 RHVLMRQGVLGIKVTIMLPYDPEGKKGPSKPLPDNVQIYEPKED 216
>gi|402244315|emb|CBW52775.1| 40S ribosomal protein S3 [Polytomella sp. Pringsheim 198.80]
Length = 225
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/220 (77%), Positives = 192/220 (87%), Gaps = 10/220 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QISK +KFV DGVF AELNE+LTRELAEDGYSGVEVR++PVRTEIIIRATRTQNVLGE+G
Sbjct: 15 QISKAKKFVRDGVFRAELNELLTRELAEDGYSGVEVRLSPVRTEIIIRATRTQNVLGEQG 74
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRFK ++V+L+AE+V+ RGLCAIAQAESLRYKLLGGLAVRRACYGVL
Sbjct: 75 RRIRELTSVIQKRFKI--DNVQLFAEEVSARGLCAIAQAESLRYKLLGGLAVRRACYGVL 132
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
R++MESGAKGCE VI+SGKLRAQRAKSMKFKDGYM+SSG YIDSAVRHV
Sbjct: 133 RYVMESGAKGCE--------VIISGKLRAQRAKSMKFKDGYMVSSGNSSRTYIDSAVRHV 184
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LLRQGVLGIKVKIM +WD G++GP TPLPD+V + KE
Sbjct: 185 LLRQGVLGIKVKIMKDWDPTGRRGPKTPLPDMVKVLDPKE 224
>gi|44968137|gb|AAS49584.1| ribosomal protein S3 [Gallus gallus]
Length = 211
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/215 (81%), Positives = 182/215 (84%), Gaps = 8/215 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 1 FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 61 AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GIKVKI L WD GK GP PLPD V+I KEE+
Sbjct: 173 GIKVKITLPWDPSGKIGPKKPLPDHVSIVVPKEEI 207
>gi|196012547|ref|XP_002116136.1| ribosomal protein S3e [Trichoplax adhaerens]
gi|190581459|gb|EDV21536.1| ribosomal protein S3e [Trichoplax adhaerens]
Length = 228
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/225 (75%), Positives = 186/225 (82%), Gaps = 8/225 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISKKRKFVADG+F AELN L+RELAEDGYSGVEVRVTP RTEIII ATRTQNVLGE
Sbjct: 3 AASISKKRKFVADGIFRAELNNFLSRELAEDGYSGVEVRVTPTRTEIIISATRTQNVLGE 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIREL S++QKRF FPE+SVE+YAEKV RGLCAIAQ ESLRYKL+GGLAVRRACYG
Sbjct: 63 KGRRIRELMSLIQKRFNFPEDSVEIYAEKVAARGLCAIAQCESLRYKLIGGLAVRRACYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE ++VSGKLR QRAKSMKF DG MI +GQP +Y+D+A+R
Sbjct: 123 VLRFIMESGAKGCE--------IVVSGKLRGQRAKSMKFVDGLMIHTGQPCVDYVDTAIR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY 226
HV LRQGVLGIKVKIML D GK GP PLPD V+I K EV+
Sbjct: 175 HVYLRQGVLGIKVKIMLPTDPTGKSGPKKPLPDYVSISEPKSEVF 219
>gi|44967199|gb|AAS49566.1| ribosomal protein S3 [Protopterus dolloi]
Length = 211
Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/215 (81%), Positives = 182/215 (84%), Gaps = 8/215 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG KGRRIRELT
Sbjct: 1 FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGGKGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 61 AVVQKRFGFPEASVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GIKVKIML WD GK GP PLPD V+I KEE+
Sbjct: 173 GIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEI 207
>gi|61654704|gb|AAX48878.1| S3 [Suberites domuncula]
Length = 246
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 175/227 (77%), Positives = 187/227 (82%), Gaps = 8/227 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q SKKRKFVADG+F AELN L+REL+EDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAAQTSKKRKFVADGIFKAELNNFLSRELSEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FP+ +VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPDGTVELYAEKVAARGLCAIAQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE VIVSGKLR QRAKSMKF DG+MI SG P EYIDSAV
Sbjct: 121 GVLRFIMESGAKGCE--------VIVSGKLRGQRAKSMKFVDGFMIHSGFPTKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HV LRQGVLGIKVKIML D GK GP PLPD V++ K++V V
Sbjct: 173 THVHLRQGVLGIKVKIMLPHDPTGKSGPKKPLPDQVSVVEPKDDVRV 219
>gi|384497979|gb|EIE88470.1| 40S ribosomal protein S3 [Rhizopus delemar RA 99-880]
Length = 241
Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 172/236 (72%), Positives = 195/236 (82%), Gaps = 11/236 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+A QISKKRKFVADGVF+AELNE LTRELAE GY+GVEVRVTP RTEIIIRAT TQNVLG
Sbjct: 4 VAAQISKKRKFVADGVFYAELNEFLTRELAEAGYAGVEVRVTPARTEIIIRATHTQNVLG 63
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPEN+VELYAE+V NRGLCAIAQ ES+++KLL GLAVRRACY
Sbjct: 64 EKGRRIRELTTLVQKRFKFPENAVELYAERVQNRGLCAIAQCESVKFKLLNGLAVRRACY 123
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF+MESGAKGCE V+VSGK+RA RAK+MKF DG+MI SG P E+I +AV
Sbjct: 124 GVIRFVMESGAKGCE--------VVVSGKVRAARAKAMKFADGFMIHSGNPAREFITTAV 175
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
RHV LRQGVLGIKVKIML+ D G+ GP LPD+VTI K+E AP T S +
Sbjct: 176 RHVDLRQGVLGIKVKIMLDNDPTGRNGPKQTLPDIVTILEPKDE---APITEPSAQ 228
>gi|426343098|ref|XP_004038155.1| PREDICTED: 40S ribosomal protein S3-like isoform 1 [Gorilla gorilla
gorilla]
gi|426343100|ref|XP_004038156.1| PREDICTED: 40S ribosomal protein S3-like isoform 2 [Gorilla gorilla
gorilla]
gi|426343102|ref|XP_004038157.1| PREDICTED: 40S ribosomal protein S3-like isoform 3 [Gorilla gorilla
gorilla]
gi|426343104|ref|XP_004038158.1| PREDICTED: 40S ribosomal protein S3-like isoform 4 [Gorilla gorilla
gorilla]
gi|426343106|ref|XP_004038159.1| PREDICTED: 40S ribosomal protein S3-like isoform 5 [Gorilla gorilla
gorilla]
gi|426343108|ref|XP_004038160.1| PREDICTED: 40S ribosomal protein S3-like isoform 6 [Gorilla gorilla
gorilla]
gi|426343110|ref|XP_004038161.1| PREDICTED: 40S ribosomal protein S3-like isoform 7 [Gorilla gorilla
gorilla]
Length = 243
Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/234 (75%), Positives = 188/234 (80%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKR FV DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQN+ G
Sbjct: 1 MAVQISKKRMFVTDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNIPG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAIVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGC KV+ SGKLR QRAKSMK DG MI S P+N Y+ +AV
Sbjct: 121 GVLRFIMESGAKGC--------KVVASGKLRGQRAKSMKSVDGLMIHSRDPINYYVGTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
HVLLRQGVLGIKVKIML WD GK GP PLPD V++ LK+E+ P T S
Sbjct: 173 CHVLLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSVVELKDEIL--PTTPIS 224
>gi|209733334|gb|ACI67536.1| 40S ribosomal protein S3 [Salmo salar]
Length = 244
Score = 342 bits (878), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/234 (76%), Positives = 191/234 (81%), Gaps = 11/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGNVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF G MI SG PVN Y+D+A+
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVGGLMIHSGDPVNYYVDTAM 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
V +RQGVLGIKVKIML WD GK GP PLPD V+I K+E P+T S
Sbjct: 173 -EVGIRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDETI--PSTPVS 223
>gi|332024589|gb|EGI64787.1| 40S ribosomal protein S3 [Acromyrmex echinatior]
Length = 242
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 176/222 (79%), Positives = 186/222 (83%), Gaps = 9/222 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFRAELNEFLTRELAEDGYSGVEVRVTPNRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEPQNVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV
Sbjct: 178 LLRQGVLGIKVKIMLPWDPNGKSGPKKPLPDYVSIVEPKEEV 219
>gi|307167583|gb|EFN61127.1| 40S ribosomal protein S3 [Camponotus floridanus]
Length = 242
Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 176/222 (79%), Positives = 186/222 (83%), Gaps = 9/222 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFRAELNEFLTRELAEDGYSGVEVRVTPNRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEPQNVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV
Sbjct: 178 LLRQGVLGIKVKIMLPWDPNGKSGPKKPLPDYVSIVEPKEEV 219
>gi|354501651|ref|XP_003512903.1| PREDICTED: 40S ribosomal protein S3-like [Cricetulus griseus]
Length = 247
Score = 342 bits (877), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/224 (78%), Positives = 184/224 (82%), Gaps = 10/224 (4%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 15 FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 74
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE SVELYAEKV RGLC AQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 75 AVVQKRFGFPEGSVELYAEKVATRGLCGSAQAESLRYKLLGGLAVRRACYGVLRFIMESG 134
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 135 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 186
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
GIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 187 GIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 228
>gi|332016343|gb|EGI57256.1| 40S ribosomal protein S3 [Acromyrmex echinatior]
Length = 242
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 176/222 (79%), Positives = 186/222 (83%), Gaps = 9/222 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFRAELNEFLTRELAEDGYSGVEVRVTPNRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEPQNVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LLRQGVLGIKVKIML WD GK GP PLPD V+I KEEV
Sbjct: 178 LLRQGVLGIKVKIMLPWDPNGKSGPKKPLPDYVSIVEPKEEV 219
>gi|322783274|gb|EFZ10858.1| hypothetical protein SINV_09070 [Solenopsis invicta]
Length = 257
Score = 342 bits (876), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 175/222 (78%), Positives = 186/222 (83%), Gaps = 9/222 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 21 ISKKRKFVGDGVFRAELNEFLTRELAEDGYSGVEVRVTPNRTEIILLATHTQSVLGEKGR 80
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 81 RIRELTSVVQKRFNFKEPQNVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 140
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 141 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 192
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+
Sbjct: 193 LLRQGVLGIKVKIMLPWDPNGKSGPKKPLPDYVSIVEPKEEI 234
>gi|345570572|gb|EGX53393.1| hypothetical protein AOL_s00006g259 [Arthrobotrys oligospora ATCC
24927]
Length = 270
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/239 (73%), Positives = 191/239 (79%), Gaps = 9/239 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RK VADGVF+AELNE TRELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+
Sbjct: 5 TAISKRRKAVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQ 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGLCA+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 65 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLCAVAQCESLRYKLLNGLAVRRACYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RH
Sbjct: 125 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRH 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELPVA 240
VLLRQGVLGIKVKIM D GK GP LPD VT I P +E+ +AP + PVA
Sbjct: 177 VLLRQGVLGIKVKIMRGSDPDGKAGPNKSLPDTVTIIEPKEEQPVLAPNSQDYTAKPVA 235
>gi|269115422|gb|ACZ26288.1| putative ribosomal protein S3 [Mayetiola destructor]
Length = 250
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 188/232 (81%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFV +G+F AELNE LTR+LAEDGYSGVE+RVTP RTEIII AT+T NVLG
Sbjct: 1 MALPISKKRKFVLNGIFKAELNEFLTRQLAEDGYSGVEIRVTPTRTEIIIMATKTLNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF F +VELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFAPGTVELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N Y+DSA
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNAYVDSAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
RHVLLRQGVLGIKVKIML +D GK GP PLPD VT I P +E++Y P T
Sbjct: 173 RHVLLRQGVLGIKVKIMLPYDPNGKIGPKKPLPDNVTVIEPKEEQIYEQPET 224
>gi|28630191|gb|AAN77884.1| ribosomal protein S3 [Scyliorhinus canicula]
Length = 211
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/215 (80%), Positives = 181/215 (84%), Gaps = 8/215 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADG+F AELNE LTR LAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 1 FVADGIFKAELNEFLTRGLAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+VVQKRF FPE VELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG
Sbjct: 61 AVVQKRFGFPEGRVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 173 GIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEI 207
>gi|302695173|ref|XP_003037265.1| 40S ribosomal protein S3 [Schizophyllum commune H4-8]
gi|300110962|gb|EFJ02363.1| hypothetical protein SCHCODRAFT_84144 [Schizophyllum commune H4-8]
Length = 266
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/232 (75%), Positives = 191/232 (82%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADGVF AELN+ TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MAAQISKKRKFVADGVFRAELNDFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFVDFAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHVLLRQGVLGIKVKIM WD +G GP PLPD VTI P ++V P++
Sbjct: 173 RHVLLRQGVLGIKVKIMKGWDPEGLVGPKKPLPDNVTILEPPVDKVVGEPSS 224
>gi|50284382|emb|CAH04122.1| ribsomal protein S3e [Papilio dardanus]
Length = 220
Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/222 (76%), Positives = 184/222 (82%), Gaps = 8/222 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE +VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------AVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VLLRQGVLGIKV+IML WD +GK GP P PD + + K+E
Sbjct: 176 VLLRQGVLGIKVEIMLPWDXQGKNGPKRPQPDHILVTEPKDE 217
>gi|340710430|ref|XP_003393793.1| PREDICTED: 40S ribosomal protein S3-like [Bombus terrestris]
Length = 242
Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 175/231 (75%), Positives = 191/231 (82%), Gaps = 11/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEII+ AT TQNVLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPHRTEIILLATHTQNVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E ++ELYAEKV RGLCAIAQAESLR+KL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEAQNIELYAEKVATRGLCAIAQAESLRFKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LLRQGVLGIKVKIML +D GK GP PLPD V+I K+EV+ P+ TS
Sbjct: 178 LLRQGVLGIKVKIMLPYDPHGKTGPKKPLPDSVSIVEPKDEVF--PSQPTS 226
>gi|195053458|ref|XP_001993643.1| GH20000 [Drosophila grimshawi]
gi|193895513|gb|EDV94379.1| GH20000 [Drosophila grimshawi]
Length = 246
Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/239 (72%), Positives = 190/239 (79%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 3 MNLNISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLG 62
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 63 EKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 122
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 123 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 174
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 175 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|195113493|ref|XP_002001302.1| GI22047 [Drosophila mojavensis]
gi|193917896|gb|EDW16763.1| GI22047 [Drosophila mojavensis]
Length = 246
Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/239 (72%), Positives = 190/239 (79%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 3 MNLNISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLG 62
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 63 EKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 122
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 123 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 174
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 175 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|289743349|gb|ADD20422.1| ribosomal protein S3 [Glossina morsitans morsitans]
Length = 263
Score = 339 bits (870), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/236 (73%), Positives = 190/236 (80%), Gaps = 9/236 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ ISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 23 MSLTISKKRKFVADGMFKAELNEFLTRELAEDGYSGVEVRVTPARTEIIIMATKTQQVLG 82
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 83 EKGRRIRELTAMVQKRFNFEPGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 142
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 143 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 194
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I
Sbjct: 195 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKI 250
>gi|195452576|ref|XP_002073414.1| GK14111 [Drosophila willistoni]
gi|194169499|gb|EDW84400.1| GK14111 [Drosophila willistoni]
Length = 244
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 173/239 (72%), Positives = 190/239 (79%), Gaps = 9/239 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 1 MNLTISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 61 EKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 173 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 231
>gi|359492651|ref|XP_003634450.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S3-1-like
[Vitis vinifera]
Length = 246
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 175/224 (78%), Positives = 188/224 (83%), Gaps = 14/224 (6%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M TQ+SKKRKF DGVFFA LNEVLTREL E+GYSG EVRVTP+ TEIIIRAT+T NVLG
Sbjct: 1 MVTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG++I+ELTSVVQKRF+F ENSVEL AEKVNNRG AIAQAESLRYKLLGG CY
Sbjct: 61 EKGKKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGG-----XCY 115
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKL AQRAKSMKFKDGY+ISSGQPV +YID AV
Sbjct: 116 GVLRFVMESGAKGCE--------VIVSGKLCAQRAKSMKFKDGYLISSGQPVKDYIDLAV 167
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHV LRQGVLGIKVKIM WD KGKQ TTPLPDLVTIHP K++
Sbjct: 168 RHV-LRQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIHPNKQD 210
>gi|323450925|gb|EGB06804.1| hypothetical protein AURANDRAFT_60177 [Aureococcus anophagefferens]
Length = 231
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 174/236 (73%), Positives = 194/236 (82%), Gaps = 12/236 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFVADG+F+AELNE+LTRELAEDGY+GVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MAT-ISKKRKFVADGLFYAELNELLTRELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLG 59
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIRELTSVVQKRF F + +VELYAE+V NRGLCA AQAESL+YKLLGGLAVRRACY
Sbjct: 60 EKGQRIRELTSVVQKRFHFQDGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRACY 119
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF+MESGAKG E V+VSGKLRAQRAK+MKF DGYMI +G EY+DSAV
Sbjct: 120 GVVRFVMESGAKGVE--------VVVSGKLRAQRAKAMKFTDGYMIKTGHSKREYVDSAV 171
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
RHVL+RQGVLG+KV IML D GK GP L D+VTI KEE AP + E
Sbjct: 172 RHVLMRQGVLGVKVSIMLPHDASGKTGPKNTLADVVTILEPKEE---APMPVANFE 224
>gi|296423595|ref|XP_002841339.1| 40S ribosomal protein S3 [Tuber melanosporum Mel28]
gi|295637576|emb|CAZ85530.1| unnamed protein product [Tuber melanosporum]
Length = 360
Score = 339 bits (869), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/224 (75%), Positives = 183/224 (81%), Gaps = 8/224 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE TRELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 88 ISKRRKFVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 147
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGLCA+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 148 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLCAVAQCESLRYKLLNGLAVRRACYGVLR 207
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVL
Sbjct: 208 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFIDSATRHVL 259
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
LRQGVLGIKVKIM D GK GP LPD VT+ KEE +
Sbjct: 260 LRQGVLGIKVKIMRGSDPDGKSGPQKSLPDTVTVIEPKEEAPIG 303
>gi|307207014|gb|EFN84837.1| 40S ribosomal protein S3 [Harpegnathos saltator]
Length = 242
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/222 (78%), Positives = 186/222 (83%), Gaps = 9/222 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFRAELNEFLTRELAEDGYSGVEVRVTPNRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEPQNVELYAEKVAVRGLCAIAQAESLRYKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 178 LLRQGVLGIKVKIMLPWDPVGKTGPKKPLPDYVSIAEPKDEI 219
>gi|18496083|emb|CAD12886.1| ribosomal protein S3 [Drosophila virilis]
Length = 244
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/236 (72%), Positives = 189/236 (80%), Gaps = 9/236 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 1 MNLNISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 61 EKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I
Sbjct: 173 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKI 228
>gi|195390345|ref|XP_002053829.1| RpS3 [Drosophila virilis]
gi|194151915|gb|EDW67349.1| RpS3 [Drosophila virilis]
Length = 246
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/236 (72%), Positives = 189/236 (80%), Gaps = 9/236 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLG
Sbjct: 3 MNLNISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLG 62
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 63 EKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACY 122
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A
Sbjct: 123 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETAT 174
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSI 235
RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I
Sbjct: 175 RHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKI 230
>gi|383851993|ref|XP_003701515.1| PREDICTED: 40S ribosomal protein S3-like [Megachile rotundata]
Length = 242
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 192/231 (83%), Gaps = 11/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPHRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPEN-SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E ++ELYAEKV RGLCAIAQAESLR+KL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKETQNIELYAEKVATRGLCAIAQAESLRFKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LLRQGVLGIKVKIML +D +GK GP PLPD V+I K+E++ P+ TS
Sbjct: 178 LLRQGVLGIKVKIMLPYDPQGKTGPKKPLPDSVSIVEPKDEIF--PSQPTS 226
>gi|28630189|gb|AAN77883.1| ribosomal protein S3 [Myxine glutinosa]
Length = 211
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/215 (79%), Positives = 181/215 (84%), Gaps = 8/215 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADGVF AELNE LTRELAEDGYSGVE+RVTP RTE+II ATRTQNVLGE+GRRIRELT
Sbjct: 1 FVADGVFKAELNEFLTRELAEDGYSGVEIRVTPSRTEVIILATRTQNVLGEEGRRIRELT 60
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
SV+QKRF FPE +VELYAEKV NRGLCAIAQ ESLRYKLLGGLAVRRACYGVLRFIME+G
Sbjct: 61 SVIQKRFDFPEGNVELYAEKVANRGLCAIAQCESLRYKLLGGLAVRRACYGVLRFIMENG 120
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D A+RHVLLRQGVL
Sbjct: 121 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNHYVDMAIRHVLLRQGVL 172
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GIKVKIM WD GK GP PLPD V++ KEEV
Sbjct: 173 GIKVKIMRPWDPSGKIGPKKPLPDHVSVVEPKEEV 207
>gi|125772881|ref|XP_001357699.1| GA19858 [Drosophila pseudoobscura pseudoobscura]
gi|194745943|ref|XP_001955444.1| GF16244 [Drosophila ananassae]
gi|195158647|ref|XP_002020197.1| GL13632 [Drosophila persimilis]
gi|54637431|gb|EAL26833.1| GA19858 [Drosophila pseudoobscura pseudoobscura]
gi|190628481|gb|EDV44005.1| GF16244 [Drosophila ananassae]
gi|194116966|gb|EDW39009.1| GL13632 [Drosophila persimilis]
Length = 246
Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/235 (73%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 FIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVKIML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|66504343|ref|XP_623731.1| PREDICTED: 40S ribosomal protein S3 [Apis mellifera]
gi|380026164|ref|XP_003696828.1| PREDICTED: 40S ribosomal protein S3-like [Apis florea]
Length = 242
Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 191/231 (82%), Gaps = 11/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPHRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPEN-SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E ++ELYAEKV RGLCAIAQAESLR+KL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKETQNIELYAEKVATRGLCAIAQAESLRFKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LLRQGVLGIKVKIML +D GK GP PLPD V+I K+EV+ P+ TS
Sbjct: 178 LLRQGVLGIKVKIMLPYDPHGKTGPKKPLPDSVSIVEPKDEVF--PSQPTS 226
>gi|340710439|ref|XP_003393797.1| PREDICTED: 40S ribosomal protein S3-like [Bombus terrestris]
Length = 242
Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 191/231 (82%), Gaps = 11/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPHRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E ++ELYAEKV RGLCAIAQAESLR+KL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEAQNIELYAEKVATRGLCAIAQAESLRFKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LLRQGVLGIKVKIML +D GK GP PLPD V+I K+EV+ P+ TS
Sbjct: 178 LLRQGVLGIKVKIMLPYDPHGKTGPKKPLPDSVSIVEPKDEVF--PSQPTS 226
>gi|350427313|ref|XP_003494719.1| PREDICTED: 40S ribosomal protein S3-like [Bombus impatiens]
Length = 242
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 191/231 (82%), Gaps = 11/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTREL+EDGYSGVEVRVTP RTEII+ AT TQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELSEDGYSGVEVRVTPHRTEIILLATHTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPE-NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RIRELTSVVQKRF F E ++ELYAEKV RGLCAIAQAESLR+KL+GGLAVRRACYGVL
Sbjct: 66 RIRELTSVVQKRFNFKEAQNIELYAEKVATRGLCAIAQAESLRFKLIGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P NEY+++A RHV
Sbjct: 126 RFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNEYVNTATRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
LLRQGVLGIKVKIML +D GK GP PLPD V+I K+EV+ P+ TS
Sbjct: 178 LLRQGVLGIKVKIMLPYDPHGKTGPKKPLPDSVSIVEPKDEVF--PSQPTS 226
>gi|426202100|gb|EKV52023.1| hypothetical protein AGABI2DRAFT_239505 [Agaricus bisporus var.
bisporus H97]
Length = 265
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/232 (74%), Positives = 192/232 (82%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSAQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV E++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVREFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT 231
RHVLL+QGVLGIKVKIM D +G+ GP PLPD V I+ P ++V + P++
Sbjct: 173 RHVLLKQGVLGIKVKIMKGHDPEGQLGPKKPLPDAVQIYEPPVDKVVLEPSS 224
>gi|322709405|gb|EFZ00981.1| cytoplasmic ribosomal protein subunit S3 [Metarhizium anisopliae
ARSEF 23]
Length = 257
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 188/231 (81%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT+TQ VLGE
Sbjct: 5 GAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATQTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+ID+A R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDTATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D GK GP+ LPD VTI P +E+V + P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPDGKAGPSKSLPDAVTIFEPKEEQVVLQPVS 227
>gi|340959617|gb|EGS20798.1| 40S ribosomal protein S3-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 254
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/226 (75%), Positives = 184/226 (81%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISKKRKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKKRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+ID+A R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAREFIDTATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D GK GP LPD+VT+ KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPDGKSGPQKTLPDVVTVIEPKEETPV 222
>gi|157118131|ref|XP_001659023.1| 40S ribosomal protein S3 [Aedes aegypti]
gi|403182936|gb|EJY57732.1| AAEL008192-PB [Aedes aegypti]
Length = 256
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/222 (77%), Positives = 183/222 (82%), Gaps = 9/222 (4%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
R+FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRE
Sbjct: 22 RQFVANGMFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLGEKGRRIRE 81
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
LT+VVQKRF F +VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIME
Sbjct: 82 LTAVVQKRFGFAPGTVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 141
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
SGAKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A RHVLLRQG
Sbjct: 142 SGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQG 193
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
VLGIKVKIML WD GK GP PLPD V+ + P E +Y P
Sbjct: 194 VLGIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSTP 235
>gi|299755573|ref|XP_002912114.1| 40S ribosomal protein S3 [Coprinopsis cinerea okayama7#130]
gi|298411286|gb|EFI28620.1| 40S ribosomal protein S3 [Coprinopsis cinerea okayama7#130]
Length = 258
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/218 (77%), Positives = 185/218 (84%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA+QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MASQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPALEFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIM +D++G+ GP PLPD V I
Sbjct: 173 RHVLLRQGVLGIKVKIMKGYDREGQLGPRKPLPDSVQI 210
>gi|340384078|ref|XP_003390542.1| PREDICTED: 40S ribosomal protein S3-like [Amphimedon queenslandica]
Length = 236
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/228 (75%), Positives = 184/228 (80%), Gaps = 8/228 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+ +SKKRKFVADGVF AELN L++ELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEK
Sbjct: 2 STLSKKRKFVADGVFKAELNAFLSKELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEK 61
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACYGV
Sbjct: 62 GRRIRELTAVVQKRFSFPEGTVELYAEKVAARGLCAIAQCESLRYKLIGGLAVRRACYGV 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGC VIVSGKLR QRAKSMKF DG MI +G P YID+AV H
Sbjct: 122 LRFIMESGAKGC--------TVIVSGKLRGQRAKSMKFTDGLMIHAGNPTRHYIDNAVTH 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
V LRQGVLGIKV+IML D GK GP PLPD V++ KEE + A A
Sbjct: 174 VHLRQGVLGIKVQIMLPHDPTGKMGPRKPLPDQVSVAEPKEETHYAEA 221
>gi|389751372|gb|EIM92445.1| ribosomal protein S3 [Stereum hirsutum FP-91666 SS1]
Length = 267
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/232 (72%), Positives = 190/232 (81%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELNE TREL+E+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSAQISKKRKFVADGVFRAELNEFFTRELSEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL A+AQ ESLRYKLLGGLA+RRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAVAQCESLRYKLLGGLAIRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHVLLRQGVLGIKVKIM WD +G+ GP PLPD V I P +++ P++
Sbjct: 173 RHVLLRQGVLGIKVKIMKGWDPEGQLGPKKPLPDSVQILEPPVDKIVSEPSS 224
>gi|171686174|ref|XP_001908028.1| hypothetical protein [Podospora anserina S mat+]
gi|170943048|emb|CAP68701.1| unnamed protein product [Podospora anserina S mat+]
Length = 262
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/226 (75%), Positives = 184/226 (81%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIDPKEETPV 222
>gi|367049518|ref|XP_003655138.1| 40S ribosomal protein S3 [Thielavia terrestris NRRL 8126]
gi|347002402|gb|AEO68802.1| hypothetical protein THITE_2155431 [Thielavia terrestris NRRL 8126]
Length = 260
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/226 (75%), Positives = 184/226 (81%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKEETPV 222
>gi|393232568|gb|EJD40148.1| 40S ribosomal protein S3 [Auricularia delicata TFB-10046 SS5]
Length = 264
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/218 (75%), Positives = 186/218 (85%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT T+ VLG
Sbjct: 1 MSGQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTREVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRIRELT+++QKRFKFPENS+ELYAEKV +RGL A+AQ ESLRYKLLGGLAVRRACY
Sbjct: 61 DKGRRIRELTALIQKRFKFPENSLELYAEKVMHRGLSAVAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++DSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPSRDFVDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHV+L+QGVLGIKVKIM WD G+ GP PLPD+VTI
Sbjct: 173 RHVMLKQGVLGIKVKIMKGWDPTGETGPKKPLPDMVTI 210
>gi|195331295|ref|XP_002032338.1| GM26502 [Drosophila sechellia]
gi|195573126|ref|XP_002104546.1| GD21014 [Drosophila simulans]
gi|194121281|gb|EDW43324.1| GM26502 [Drosophila sechellia]
gi|194200473|gb|EDX14049.1| GD21014 [Drosophila simulans]
Length = 246
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/235 (72%), Positives = 190/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV +RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVASRGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|340379265|ref|XP_003388147.1| PREDICTED: 40S ribosomal protein S3-like [Amphimedon queenslandica]
Length = 236
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/228 (75%), Positives = 184/228 (80%), Gaps = 8/228 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+ +SKKRKFVADGVF AELN L++ELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEK
Sbjct: 2 STLSKKRKFVADGVFKAELNAFLSKELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEK 61
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELT+VVQKRF FPE +VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACYGV
Sbjct: 62 GRRIRELTAVVQKRFSFPEGTVELYAEKVAARGLCAIAQCESLRYKLIGGLAVRRACYGV 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGC VIVSGKLR QRAKSMKF DG MI +G P YID+AV H
Sbjct: 122 LRFIMESGAKGC--------TVIVSGKLRGQRAKSMKFTDGLMIHAGNPTRHYIDNAVTH 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
V LRQGVLGIKV+IML D GK GP PLPD V++ KEE + A A
Sbjct: 174 VHLRQGVLGIKVQIMLPHDPTGKMGPRKPLPDQVSVAEPKEETHHAEA 221
>gi|422293192|gb|EKU20492.1| small subunit ribosomal protein S3e [Nannochloropsis gaditana
CCMP526]
Length = 243
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 173/239 (72%), Positives = 192/239 (80%), Gaps = 18/239 (7%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T ISKKRKF+ADGVF+AELNE+LTRELAEDGY+GVEVRV P+RTEIII ATRTQNVLG
Sbjct: 1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIISATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIRELT+V+QKRF FP+ VEL+AEKV +RGLCA AQAESL+YKLLGGLAVRRACY
Sbjct: 61 EKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+ME GAKG E VIVSGKLRAQRAKSMKF+DGYMI SGQ EY+D AV
Sbjct: 121 GVLRFVMEQGAKGAE--------VIVSGKLRAQRAKSMKFQDGYMIKSGQAKREYVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPV 239
RHVL+RQGVLG+KVKIML D GK GP L D+V + KEE IELPV
Sbjct: 173 RHVLMRQGVLGVKVKIMLPHDPAGKIGPKAKLSDVVNVLEPKEE----------IELPV 221
>gi|312380148|gb|EFR26232.1| hypothetical protein AND_07881 [Anopheles darlingi]
Length = 278
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 172/220 (78%), Positives = 181/220 (82%), Gaps = 9/220 (4%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVA+G+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 46 FVANGMFRAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTQNVLGEKGRRIRELT 105
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
SVVQKRF F SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESG
Sbjct: 106 SVVQKRFGFAPGSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 165
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG P NEY+D+A RHVLLRQGVL
Sbjct: 166 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQGVL 217
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
GIKVKIML WD GK GP PLPD V+ + P E +Y P
Sbjct: 218 GIKVKIMLPWDPNGKIGPKKPLPDNVSVVEPKDEIMYSTP 257
>gi|367027792|ref|XP_003663180.1| hypothetical protein MYCTH_2315249 [Myceliophthora thermophila ATCC
42464]
gi|347010449|gb|AEO57935.1| hypothetical protein MYCTH_2315249 [Myceliophthora thermophila ATCC
42464]
Length = 260
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/226 (75%), Positives = 184/226 (81%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKEEAPV 222
>gi|195502880|ref|XP_002098418.1| RpS3 [Drosophila yakuba]
gi|194184519|gb|EDW98130.1| RpS3 [Drosophila yakuba]
Length = 246
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/235 (72%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|340522228|gb|EGR52461.1| 40s ribosomal protein [Trichoderma reesei QM6a]
Length = 264
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 186/230 (80%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II+RAT TQ VLGE+
Sbjct: 6 AQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIVRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
VLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ + P +
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKEEQAVLQPVS 227
>gi|164429154|ref|XP_956174.2| 40S ribosomal protein S3 [Neurospora crassa OR74A]
gi|157072430|gb|EAA26938.2| cytoplasmic ribosomal protein subunit S3 [Neurospora crassa OR74A]
gi|336470035|gb|EGO58197.1| cytoplasmic ribosomal protein subunit S3 [Neurospora tetrasperma
FGSC 2508]
gi|350290273|gb|EGZ71487.1| cytoplasmic ribosomal protein subunit S3 [Neurospora tetrasperma
FGSC 2509]
Length = 262
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/223 (76%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKSLPDAVTIIEPKEE 219
>gi|402086493|gb|EJT81391.1| 40S ribosomal protein S3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 263
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 173/233 (74%), Positives = 188/233 (80%), Gaps = 12/233 (5%)
Query: 1 MAT---QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQN 57
MAT QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ
Sbjct: 1 MATPGAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQE 60
Query: 58 VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
VLGE+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRR
Sbjct: 61 VLGEQGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRR 120
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 177
ACYGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID
Sbjct: 121 ACYGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFID 172
Query: 178 SAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
SA RHVLLRQGVLGIKVKIM D +GK GP LPD VTI P +E+ V P
Sbjct: 173 SATRHVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTILEPKEEQPVVQP 225
>gi|407924047|gb|EKG17107.1| Ribosomal protein S3 [Macrophomina phaseolina MS6]
Length = 265
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 189/231 (81%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 6 GSQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 65
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV+NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 66 QGRRIRELTSLIQKRFKFPENSVSLYAAKVSNRGLSAVAQCESLRYKLLNGLAVRRACYG 125
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++ID+A R
Sbjct: 126 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAHDFIDTATR 177
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ V P +
Sbjct: 178 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDSVTIIEPKEEQPIVQPMS 228
>gi|328862650|gb|EGG11751.1| hypothetical protein MELLADRAFT_70763 [Melampsora larici-populina
98AG31]
Length = 269
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/231 (74%), Positives = 189/231 (81%), Gaps = 9/231 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVF+AEL+E TREL+E+GYSG EVRVT RTE+IIRAT TQ VLG+K
Sbjct: 2 TTISKRRKFVADGVFYAELSEFFTRELSEEGYSGCEVRVTHARTEVIIRATHTQEVLGQK 61
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS+VQKRFKFPE SVELYAEKV RGLCA+AQ ESLRYKLLGGLAVRRACYGV
Sbjct: 62 GRRIRELTSLVQKRFKFPEGSVELYAEKVQQRGLCAVAQCESLRYKLLGGLAVRRACYGV 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AVRH
Sbjct: 122 LRFIMESNAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPCVDFVDQAVRH 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQG-PTTPLPDLVTIHPLKEEVYVAPATA 232
VLLRQGVLGIKVKIM D +G+ G P PLPDLVT+ KEEV V T+
Sbjct: 174 VLLRQGVLGIKVKIMRGSDTEGRNGAPAKPLPDLVTVFDPKEEVIVQQPTS 224
>gi|336268268|ref|XP_003348899.1| 40S ribosomal protein S3 [Sordaria macrospora k-hell]
gi|380094158|emb|CCC08375.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 262
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/223 (76%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKTLPDAVTIIEPKEE 219
>gi|402221674|gb|EJU01742.1| 40S ribosomal protein S3 [Dacryopinax sp. DJM-731 SS1]
Length = 259
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/217 (77%), Positives = 182/217 (83%), Gaps = 8/217 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+T ISKKRKFVADGVF AEL E TRELAE+GYSG EVRVT RTEIIIRAT TQ VLGE
Sbjct: 11 STTISKKRKFVADGVFRAELGEFFTRELAEEGYSGCEVRVTHARTEIIIRATHTQEVLGE 70
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKFPENS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRACYG
Sbjct: 71 KGRRIRELTALVQKRFKFPENSLELYAEKVQNRGLSAVAQCESLRYKLLGGLAVRRACYG 130
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MES AKGCE VIVSGKLRA RAKSMKF DG+MI SGQP +++D AVR
Sbjct: 131 VLRFVMESEAKGCE--------VIVSGKLRAARAKSMKFTDGFMIHSGQPARDFVDYAVR 182
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
HVLLRQGVLGIKVKIM WD +G+ GP PLPD VTI
Sbjct: 183 HVLLRQGVLGIKVKIMKAWDPEGRLGPRKPLPDTVTI 219
>gi|429856532|gb|ELA31437.1| 40s ribosomal protein s3 [Colletotrichum gloeosporioides Nara gc5]
Length = 259
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 187/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD V+I P +E+ V P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVSILEPKEEQSVVQPMS 227
>gi|310793027|gb|EFQ28488.1| ribosomal protein S3 [Glomerella graminicola M1.001]
Length = 261
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 187/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD V++ P +E+ V P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVSVLEPKEEQAVVQPMS 227
>gi|380470676|emb|CCF47635.1| 40S ribosomal protein S3 [Colletotrichum higginsianum]
Length = 261
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 187/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD V++ P +E+ V P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVSVLEPKEEQTVVQPMS 227
>gi|390604317|gb|EIN13708.1| ribosomal protein S3 [Punctularia strigosozonata HHB-11173 SS5]
Length = 265
Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/232 (72%), Positives = 191/232 (82%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M++QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSSQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENSVELYAEKV RGL AIAQ ESLRYKLLGGLAVRRA Y
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSVELYAEKVTYRGLSAIAQCESLRYKLLGGLAVRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVISGKLRAARAKSMKFTDGFMIHSGQPSRDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHVLL+QGVLGIKVKIM WD +G+ GP+ PLPD V I P +++ P++
Sbjct: 173 RHVLLKQGVLGIKVKIMKGWDPQGETGPSKPLPDSVQILEPPVDKIITEPSS 224
>gi|302406170|ref|XP_003000921.1| 40S ribosomal protein S3 [Verticillium albo-atrum VaMs.102]
gi|261360179|gb|EEY22607.1| 40S ribosomal protein S3 [Verticillium albo-atrum VaMs.102]
gi|346971436|gb|EGY14888.1| 40S ribosomal protein S3 [Verticillium dahliae VdLs.17]
Length = 262
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 186/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ V P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKSLPDAVTIIEPKEEQSVVQPMS 227
>gi|378725981|gb|EHY52440.1| 40S ribosomal protein S3 [Exophiala dermatitidis NIH/UT8656]
Length = 262
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 173/227 (76%), Positives = 184/227 (81%), Gaps = 11/227 (4%)
Query: 1 MATQ---ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQN 57
M TQ ISKKRKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ
Sbjct: 1 MTTQPGAISKKRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQE 60
Query: 58 VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
VLGE+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRR
Sbjct: 61 VLGEQGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRR 120
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 177
ACYGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP NE+ID
Sbjct: 121 ACYGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPANEFID 172
Query: 178 SAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
A RHVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 173 HATRHVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDSVTIIDPKEE 219
>gi|17136324|ref|NP_476632.1| ribosomal protein S3 [Drosophila melanogaster]
gi|548856|sp|Q06559.1|RS3_DROME RecName: Full=40S ribosomal protein S3
gi|290275|gb|AAA28875.1| ribosomal protein S3/AP endonuclease DNA repair protein [Drosophila
melanogaster]
gi|7300992|gb|AAF56129.1| ribosomal protein S3 [Drosophila melanogaster]
gi|21430306|gb|AAM50831.1| LD47488p [Drosophila melanogaster]
gi|220950134|gb|ACL87610.1| RpS3-PA [synthetic construct]
gi|220959146|gb|ACL92116.1| RpS3-PA [synthetic construct]
gi|346426335|gb|AEO27696.1| RpS3-PA [Drosophila melanogaster]
Length = 246
Score = 335 bits (860), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 170/235 (72%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|291389681|ref|XP_002711316.1| PREDICTED: ribosomal protein S3-like [Oryctolagus cuniculus]
Length = 286
Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 175/229 (76%), Positives = 186/229 (81%), Gaps = 10/229 (4%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRR
Sbjct: 49 SKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRR 108
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELT VVQ RF FPE SVELYAEKV RGLCAIAQAESLRY+LLGGLAVRRACYGVLRF
Sbjct: 109 IRELTVVVQTRFGFPEGSVELYAEKVAMRGLCAIAQAESLRYQLLGGLAVRRACYGVLRF 168
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE V+VSGKLR QRA+SMKF G +I SG PVN Y D+AVRHVLL
Sbjct: 169 IMESGAKGCE--------VVVSGKLRGQRAQSMKFVGGLVIHSGDPVNYYSDTAVRHVLL 220
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RQGVLGIKVK+ML WD K GP PLPD V++ K+E+ P T S
Sbjct: 221 RQGVLGIKVKLMLPWDPSRKIGPKKPLPDHVSMVEPKDEIL--PTTPIS 267
>gi|392588527|gb|EIW77859.1| 40S ribosomal protein S3 [Coniophora puteana RWD-64-598 SS2]
Length = 267
Score = 335 bits (860), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/244 (70%), Positives = 196/244 (80%), Gaps = 12/244 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELNE REL+E+GYSG +VRVT RTEIIIRA+ TQ VLG
Sbjct: 1 MSAQISKKRKFVADGVFRAELNEFFARELSEEGYSGCDVRVTHARTEIIIRASMTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPEN++ELYAEKV +RGL A+AQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENALELYAEKVQHRGLSAVAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
G+LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GILRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPSKDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATS---IE 236
RHVLLRQGVLGIKVKIM WD +G GP PLPD V I P ++V + P++ + +
Sbjct: 173 RHVLLRQGVLGIKVKIMKGWDPEGVLGPRKPLPDSVQILEPPVDKVVLEPSSESKEPFVA 232
Query: 237 LPVA 240
PVA
Sbjct: 233 APVA 236
>gi|403173943|ref|XP_003332971.2| 40S ribosomal protein S3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375170763|gb|EFP88552.2| 40S ribosomal protein S3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 265
Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 172/226 (76%), Positives = 187/226 (82%), Gaps = 9/226 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVFFAEL+E TRELAE+GYSG EVRVT RTE+IIRAT TQ VLG+K
Sbjct: 2 TTISKRRKFVADGVFFAELSEFFTRELAEEGYSGCEVRVTHARTEVIIRATHTQEVLGQK 61
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS+VQKRFKFPE SVELYAEKV RGLCA+AQ ESLRYKLLGGLAVRRACYGV
Sbjct: 62 GRRIRELTSLVQKRFKFPEGSVELYAEKVQQRGLCAVAQCESLRYKLLGGLAVRRACYGV 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AVRH
Sbjct: 122 LRFIMESNAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPSVDFVDQAVRH 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQG-PTTPLPDLVTIHPLKEEVYV 227
VLLRQGVLGIKVKIM D +G+ G P PLPD+VTI KEEV V
Sbjct: 174 VLLRQGVLGIKVKIMRGNDTEGRGGAPPKPLPDMVTIFEPKEEVIV 219
>gi|302904072|ref|XP_003048997.1| 40S ribosomal protein S3 [Nectria haematococca mpVI 77-13-4]
gi|256729931|gb|EEU43284.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 260
Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 187/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GSQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ + P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIEPKEEQAVLQPVS 227
>gi|116207712|ref|XP_001229665.1| 40S ribosomal protein S3 [Chaetomium globosum CBS 148.51]
gi|88183746|gb|EAQ91214.1| 40S ribosomal protein S3 [Chaetomium globosum CBS 148.51]
Length = 260
Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 170/226 (75%), Positives = 184/226 (81%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
TQISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GTQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D +GK GP LPD VTI K+E V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKDEAPV 222
>gi|194910452|ref|XP_001982149.1| GG11202 [Drosophila erecta]
gi|190656787|gb|EDV54019.1| GG11202 [Drosophila erecta]
Length = 246
Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 169/235 (71%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RG+CAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVATRGICAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|85857570|gb|ABC86320.1| IP15838p [Drosophila melanogaster]
Length = 253
Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 170/235 (72%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 14 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 73
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 74 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 133
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 134 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 185
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 186 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 240
>gi|393218435|gb|EJD03923.1| ribosomal protein S3 [Fomitiporia mediterranea MF3/22]
Length = 264
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/232 (72%), Positives = 189/232 (81%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA+QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MASQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL A+AQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAVAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+M+ SGQP +++D A
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMVHSGQPARDFVDYAY 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHVLL+QGVLGIKVKIM WD +G+ GP PLPD V I P +++ P +
Sbjct: 173 RHVLLKQGVLGIKVKIMKGWDPEGQIGPKKPLPDSVQILDPPIDKIVAEPTS 224
>gi|388853822|emb|CCF52543.1| probable 40S ribosomal protein S3 [Ustilago hordei]
Length = 258
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/237 (70%), Positives = 190/237 (80%), Gaps = 8/237 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ ISKKRKFVADGVF AELNE TREL+E+GYSG EVRVT RTEIIIRAT TQ VLG+
Sbjct: 3 SANISKKRKFVADGVFAAELNEFFTRELSEEGYSGCEVRVTHARTEIIIRATHTQEVLGD 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKFPENS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRA YG
Sbjct: 63 KGRRIRELTALVQKRFKFPENSLELYAEKVQNRGLHAVAQCESLRYKLLGGLAVRRAAYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQPV +++D AVR
Sbjct: 123 VLRFVMESGAKGCE--------VVISGKLRAARAKSMKFTDGFMIHSGQPVKDFVDEAVR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELP 238
HVL++QGVLGIKVKIM WD +G+ G PLPD VTI KEE + + S + P
Sbjct: 175 HVLMKQGVLGIKVKIMQGWDPEGRAGKPFPLPDAVTILEPKEEAPILAPVSESRQAP 231
>gi|242785057|ref|XP_002480514.1| 40S ribosomal protein S3 [Talaromyces stipitatus ATCC 10500]
gi|218720661|gb|EED20080.1| 40S ribosomal protein S3, putative [Talaromyces stipitatus ATCC
10500]
Length = 266
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/225 (76%), Positives = 184/225 (81%), Gaps = 10/225 (4%)
Query: 2 ATQ--ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
ATQ ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VL
Sbjct: 3 ATQGAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVL 62
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GE+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRAC
Sbjct: 63 GEQGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRAC 122
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA
Sbjct: 123 YGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSA 174
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 175 TRHVLLRQGVLGIKVKIMRGSDPEGKSGPQKTLPDAVTIIEPKEE 219
>gi|148684446|gb|EDL16393.1| ribosomal protein S3, isoform CRA_h [Mus musculus]
Length = 223
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/214 (80%), Positives = 184/214 (85%), Gaps = 9/214 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
RHVLLRQGVLGIKVKI++ + K + PTTP+ +
Sbjct: 173 RHVLLRQGVLGIKVKIII-VEPKDEILPTTPISE 205
>gi|358383594|gb|EHK21258.1| hypothetical protein TRIVIDRAFT_78477 [Trichoderma virens Gv29-8]
Length = 263
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/222 (75%), Positives = 182/222 (81%), Gaps = 8/222 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II+RAT TQ VLGE+
Sbjct: 6 AQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIVRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKEE 219
>gi|358397895|gb|EHK47263.1| hypothetical protein TRIATDRAFT_298935 [Trichoderma atroviride IMI
206040]
Length = 264
Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/226 (74%), Positives = 183/226 (80%), Gaps = 8/226 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II+RAT TQ VLGE
Sbjct: 5 GAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIVRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE V
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTIIEPKEEAAV 222
>gi|261197469|ref|XP_002625137.1| 40S ribosomal protein S3 [Ajellomyces dermatitidis SLH14081]
gi|239595767|gb|EEQ78348.1| 40S ribosomal protein S3 [Ajellomyces dermatitidis SLH14081]
gi|239606762|gb|EEQ83749.1| 40S ribosomal protein S3 [Ajellomyces dermatitidis ER-3]
gi|327351227|gb|EGE80084.1| hypothetical protein BDDG_03025 [Ajellomyces dermatitidis ATCC
18188]
Length = 270
Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 182/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 219
>gi|70990926|ref|XP_750312.1| 40S ribosomal protein S3 [Aspergillus fumigatus Af293]
gi|119496667|ref|XP_001265107.1| 40S ribosomal protein S3 [Neosartorya fischeri NRRL 181]
gi|66847944|gb|EAL88274.1| 40S ribosomal protein S3, putative [Aspergillus fumigatus Af293]
gi|119413269|gb|EAW23210.1| 40S ribosomal protein S3, putative [Neosartorya fischeri NRRL 181]
gi|159130785|gb|EDP55898.1| 40S ribosomal protein S3, putative [Aspergillus fumigatus A1163]
Length = 266
Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 219
>gi|440639340|gb|ELR09259.1| small subunit ribosomal protein S3e [Geomyces destructans 20631-21]
Length = 262
Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/228 (74%), Positives = 185/228 (81%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKF+ADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 10 ISKRRKFIADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 69
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 70 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 129
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVL
Sbjct: 130 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVL 181
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D +GK GPT LPD VT I P E+ V P +
Sbjct: 182 LRQGVLGIKVKIMRGSDPEGKAGPTKSLPDSVTIIEPKNEDPVVQPMS 229
>gi|170095049|ref|XP_001878745.1| 40S ribosomal protein S3 [Laccaria bicolor S238N-H82]
gi|164646049|gb|EDR10295.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 262
Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/218 (77%), Positives = 182/218 (83%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M++QISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSSQISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIM D G+ GP PLPD V I
Sbjct: 173 RHVLLRQGVLGIKVKIMKGSDPDGQTGPRKPLPDSVQI 210
>gi|403178905|ref|XP_003337266.2| 40S ribosomal protein S3 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164530|gb|EFP92847.2| small subunit ribosomal protein S3e [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 341
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/226 (75%), Positives = 187/226 (82%), Gaps = 9/226 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVF+AEL+E TRELAE+GYSG EVRVT RTE+IIRAT TQ VLG+K
Sbjct: 78 TTISKRRKFVADGVFYAELSEFFTRELAEEGYSGCEVRVTHARTEVIIRATHTQEVLGQK 137
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS+VQKRFKFPE SVELYAEKV RGLCA+AQ ESLRYKLLGGLAVRRACYGV
Sbjct: 138 GRRIRELTSLVQKRFKFPEGSVELYAEKVQQRGLCAVAQCESLRYKLLGGLAVRRACYGV 197
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AVRH
Sbjct: 198 LRFIMESNAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPSVDFVDQAVRH 249
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQG-PTTPLPDLVTIHPLKEEVYV 227
VLLRQGVLGIKVKIM D +G+ G P PLPD+VTI KEEV V
Sbjct: 250 VLLRQGVLGIKVKIMRGNDTEGRGGAPPKPLPDMVTIFEPKEEVIV 295
>gi|145254885|ref|XP_001398791.1| 40S ribosomal protein S3 [Aspergillus niger CBS 513.88]
gi|134084376|emb|CAK48715.1| unnamed protein product [Aspergillus niger]
gi|350630615|gb|EHA18987.1| hypothetical protein ASPNIDRAFT_202416 [Aspergillus niger ATCC
1015]
gi|358366728|dbj|GAA83348.1| 40S ribosomal protein S3 [Aspergillus kawachii IFO 4308]
Length = 266
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIEPKEE 219
>gi|212527956|ref|XP_002144135.1| 40S ribosomal protein S3 [Talaromyces marneffei ATCC 18224]
gi|210073533|gb|EEA27620.1| 40S ribosomal protein S3, putative [Talaromyces marneffei ATCC
18224]
Length = 266
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/225 (76%), Positives = 184/225 (81%), Gaps = 10/225 (4%)
Query: 2 ATQ--ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
ATQ ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VL
Sbjct: 3 ATQGAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVL 62
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GE+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRAC
Sbjct: 63 GEQGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRAC 122
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA
Sbjct: 123 YGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSA 174
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 175 TRHVLLRQGVLGIKVKIMRGSDPEGKSGPQKTLPDAVTIIEPKEE 219
>gi|242218874|ref|XP_002475223.1| 40S ribosomal protein S3 [Postia placenta Mad-698-R]
gi|220725609|gb|EED79589.1| 40S ribosomal protein S3 [Postia placenta Mad-698-R]
Length = 262
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/232 (72%), Positives = 189/232 (81%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELN+ TREL+E+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSAQISKKRKFVADGVFRAELNDFFTRELSEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPALDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHV+LRQGVLGIKVKIM WD +G+ GP PLPD V I P +++ P +
Sbjct: 173 RHVMLRQGVLGIKVKIMKGWDPEGQVGPRKPLPDSVQILEPPLDKIVAEPTS 224
>gi|169764753|ref|XP_001816848.1| 40S ribosomal protein S3 [Aspergillus oryzae RIB40]
gi|238503978|ref|XP_002383221.1| 40S ribosomal protein S3 [Aspergillus flavus NRRL3357]
gi|83764702|dbj|BAE54846.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220690692|gb|EED47041.1| 40S ribosomal protein S3, putative [Aspergillus flavus NRRL3357]
gi|391863281|gb|EIT72592.1| 40S ribosomal protein [Aspergillus oryzae 3.042]
Length = 266
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 219
>gi|295670700|ref|XP_002795897.1| 40S ribosomal protein S3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284030|gb|EEH39596.1| 40S ribosomal protein S3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 270
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/226 (75%), Positives = 185/226 (81%), Gaps = 9/226 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
LRQGVLGIKVKIM D +GK GP LPD VT I P +EE + P
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIDPKEEEPVLHP 225
>gi|293333308|ref|NP_001169131.1| uncharacterized protein LOC100382976 [Zea mays]
gi|223975097|gb|ACN31736.1| unknown [Zea mays]
Length = 266
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/225 (76%), Positives = 183/225 (81%), Gaps = 10/225 (4%)
Query: 2 ATQ--ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
ATQ ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VL
Sbjct: 3 ATQGAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVL 62
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GE GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRAC
Sbjct: 63 GENGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRAC 122
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA
Sbjct: 123 YGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSA 174
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 175 TRHVLLRQGVLGIKVKIMRGSDPEGKSGPQKTLPDAVTIIEPKEE 219
>gi|298714483|emb|CBJ27505.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 222
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/221 (74%), Positives = 190/221 (85%), Gaps = 8/221 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRKFVADGVF+AELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+
Sbjct: 1 MSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQ 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF FP+++VELYAE+V RGLCA QAESL+YKLLGGLAVRRACYGVLR
Sbjct: 61 RIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLR 120
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKG E VIV+GKLRAQRAK+MKF+DGYMI SG+ +Y+D AVRHV+
Sbjct: 121 FIMESGAKGAE--------VIVAGKLRAQRAKAMKFRDGYMIKSGRVREDYVDHAVRHVM 172
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
+RQGVLG+ V IML D GK+GP TPL D++TI P KEE+
Sbjct: 173 MRQGVLGVTVSIMLPHDPTGKEGPKTPLSDVITILPPKEEI 213
>gi|408397169|gb|EKJ76319.1| hypothetical protein FPSE_03574 [Fusarium pseudograminearum CS3096]
Length = 260
Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 186/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GSQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ + P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIEPKEEQAVLQPVS 227
>gi|226289773|gb|EEH45257.1| 40S ribosomal protein S3 [Paracoccidioides brasiliensis Pb18]
Length = 270
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/226 (75%), Positives = 185/226 (81%), Gaps = 9/226 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
LRQGVLGIKVKIM D +GK GP LPD VT I P +EE + P
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIDPKEEEPVLHP 225
>gi|121702671|ref|XP_001269600.1| 40S ribosomal protein S3 [Aspergillus clavatus NRRL 1]
gi|119397743|gb|EAW08174.1| 40S ribosomal protein S3, putative [Aspergillus clavatus NRRL 1]
Length = 267
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 219
>gi|325183864|emb|CCA18322.1| 40S ribosomal protein S33 putative [Albugo laibachii Nc14]
gi|325183947|emb|CCA18405.1| 40S ribosomal protein S33 putative [Albugo laibachii Nc14]
Length = 246
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/232 (73%), Positives = 191/232 (82%), Gaps = 11/232 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFVADGVF+AELNE+L REL DGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATNISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPLRTEIIIRATRTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIRELTSVVQKRF F E SVELYAE++ NRGLC+ AQAESL+Y+LL GLAVRRACY
Sbjct: 61 EKGQRIRELTSVVQKRFNFAEGSVELYAERIANRGLCSQAQAESLKYRLLEGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
VLRF+ME+GAKGCE VIVSGKLRAQRAKSMKFK+GYM+ +G EY+D+AV
Sbjct: 121 SVLRFVMEAGAKGCE--------VIVSGKLRAQRAKSMKFKEGYMVKTGNARQEYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE---VYVAP 229
RHVL+RQGVLG+KV IML D GKQGP L D+VTI KE+ VY AP
Sbjct: 173 RHVLMRQGVLGVKVSIMLPHDPTGKQGPKRNLDDVVTILEPKEDIPLVYPAP 224
>gi|449017871|dbj|BAM81273.1| 40S ribosomal protein S3 [Cyanidioschyzon merolae strain 10D]
Length = 262
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 189/230 (82%), Gaps = 8/230 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+S KRKFVADGVFFAEL+E+LTRELAEDGY+GVEVRVTP E+IIRATRTQ VLGEKG
Sbjct: 7 QVSWKRKFVADGVFFAELSELLTRELAEDGYAGVEVRVTPRGHEVIIRATRTQTVLGEKG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V+KRF FPEN V L+ E+V NRGLCA+AQAESLRYKLLGGLAVRRA YGVL
Sbjct: 67 RRIRELTALVEKRFGFPENQVSLFVERVPNRGLCAMAQAESLRYKLLGGLAVRRAAYGVL 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+MESGAKGCE V +SGKLRAQRAK+MKF DGYMIS+GQP ++ID AVRHV
Sbjct: 127 RFVMESGAKGCE--------VQISGKLRAQRAKTMKFMDGYMISTGQPKLDFIDRAVRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATAT 233
LLRQGVLGIKVKIML D G+QGP PLPD + I KEE + AT
Sbjct: 179 LLRQGVLGIKVKIMLPHDPTGRQGPRKPLPDSIVILEPKEEDTLGKVVAT 228
>gi|255942573|ref|XP_002562055.1| Pc18g02110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586788|emb|CAP94435.1| Pc18g02110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 264
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II+RAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIVRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 219
>gi|225556722|gb|EEH05010.1| 40S ribosomal protein S3 [Ajellomyces capsulatus G186AR]
Length = 271
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/220 (76%), Positives = 182/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 219
>gi|342874800|gb|EGU76719.1| hypothetical protein FOXB_12740 [Fusarium oxysporum Fo5176]
Length = 260
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 186/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 5 GSQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A R
Sbjct: 125 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ + P +
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIEPKEEQAVLQPVS 227
>gi|325087729|gb|EGC41039.1| 40S ribosomal protein S3 [Ajellomyces capsulatus H88]
Length = 1089
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 170/223 (76%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 823 AGAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 882
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 883 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 942
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA R
Sbjct: 943 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATR 994
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 995 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 1037
>gi|346319548|gb|EGX89149.1| cytoplasmic ribosomal protein subunit S3 [Cordyceps militaris CM01]
Length = 258
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/223 (75%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT+TQ VLGE
Sbjct: 5 GAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATQTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP N++IDSA R
Sbjct: 125 VLRFIMESDAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPKNDFIDSATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIDPKEE 219
>gi|414887550|tpg|DAA63564.1| TPA: hypothetical protein ZEAMMB73_179327 [Zea mays]
Length = 198
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/183 (91%), Positives = 170/183 (92%), Gaps = 8/183 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF FPE VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPEGGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSG PVN YIDSAVRHVL
Sbjct: 127 FVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGHPVNLYIDSAVRHVL 178
Query: 185 LRQ 187
LRQ
Sbjct: 179 LRQ 181
>gi|451997970|gb|EMD90435.1| hypothetical protein COCHEDRAFT_1157448 [Cochliobolus
heterostrophus C5]
Length = 265
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 186/230 (80%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+
Sbjct: 6 TAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
VLLRQGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPSKSLPDSVTIIEPKEEQPVVQPMS 227
>gi|320592132|gb|EFX04571.1| 40S ribosomal protein s3 [Grosmannia clavigera kw1407]
Length = 264
Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 181/221 (81%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+G
Sbjct: 7 QISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVL
Sbjct: 67 RRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVL 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHV
Sbjct: 127 RFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LLRQGVLGIKVKIM D GK GP LPD VTI KEE
Sbjct: 179 LLRQGVLGIKVKIMRGSDPDGKAGPQKTLPDAVTIIEPKEE 219
>gi|349803955|gb|AEQ17450.1| putative ribosomal protein s3 [Hymenochirus curtipes]
Length = 235
Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 176/234 (75%), Positives = 184/234 (78%), Gaps = 21/234 (8%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQ LAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQ-----------LAVRRACY 109
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAK+MKF DG MI SG PVN Y+D+AV
Sbjct: 110 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKAMKFVDGLMIHSGDPVNYYVDTAV 161
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 162 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 213
>gi|451847106|gb|EMD60414.1| hypothetical protein COCSADRAFT_40058 [Cochliobolus sativus ND90Pr]
Length = 265
Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 186/230 (80%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+
Sbjct: 6 TAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
VLLRQGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPSKSLPDAVTIIEPKEEQPVVQPMS 227
>gi|361124160|gb|EHK96273.1| putative 40S ribosomal protein S3 [Glarea lozoyensis 74030]
Length = 263
Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 185/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
T ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 7 GTAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 66
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 67 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 126
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A R
Sbjct: 127 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATR 178
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ V P +
Sbjct: 179 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEEQSVVQPMS 229
>gi|425768995|gb|EKV07505.1| hypothetical protein PDIP_73820 [Penicillium digitatum Pd1]
gi|425770579|gb|EKV09048.1| hypothetical protein PDIG_64480 [Penicillium digitatum PHI26]
Length = 264
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II+RAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIVRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 219
>gi|240281578|gb|EER45081.1| 40S ribosomal protein S3 [Ajellomyces capsulatus H143]
Length = 1054
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/223 (76%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 788 AGAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 847
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 848 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 907
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA R
Sbjct: 908 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATR 959
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 960 HVLLRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 1002
>gi|189188112|ref|XP_001930395.1| 40S ribosomal protein S3 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330936377|ref|XP_003305367.1| 40S ribosomal protein S3 [Pyrenophora teres f. teres 0-1]
gi|187972001|gb|EDU39500.1| 40S ribosomal protein S3-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311317666|gb|EFQ86553.1| hypothetical protein PTT_18182 [Pyrenophora teres f. teres 0-1]
Length = 266
Score = 333 bits (854), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 186/230 (80%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+
Sbjct: 6 TAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
VLLRQGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPSKSLPDSVTIIEPKEEQPVVQPMS 227
>gi|389625837|ref|XP_003710572.1| 40S ribosomal protein S3 [Magnaporthe oryzae 70-15]
gi|351650101|gb|EHA57960.1| 40S ribosomal protein S3 [Magnaporthe oryzae 70-15]
gi|440467710|gb|ELQ36909.1| 40S ribosomal protein S3 [Magnaporthe oryzae Y34]
gi|440480625|gb|ELQ61280.1| 40S ribosomal protein S3 [Magnaporthe oryzae P131]
Length = 262
Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 186/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE
Sbjct: 6 AAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGE 65
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFP +SV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 66 QGRRIRELTSLIQKRFKFPADSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 125
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 126 VLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATR 177
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLGIKVKIM D +GK GP LPD VTI P +E+ V P +
Sbjct: 178 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKSLPDAVTILEPKEEQPVVQPVS 228
>gi|119187711|ref|XP_001244462.1| 40S ribosomal protein S3 [Coccidioides immitis RS]
gi|303316826|ref|XP_003068415.1| 40S ribosomal protein S3 [Coccidioides posadasii C735 delta SOWgp]
gi|240108096|gb|EER26270.1| 40S ribosomal protein S3, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038258|gb|EFW20194.1| 40S ribosomal protein S3 [Coccidioides posadasii str. Silveira]
gi|392871183|gb|EAS33062.2| 40S ribosomal protein [Coccidioides immitis RS]
Length = 263
Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 219
>gi|258576671|ref|XP_002542517.1| 40S ribosomal protein S3 [Uncinocarpus reesii 1704]
gi|237902783|gb|EEP77184.1| 40S ribosomal protein S3 [Uncinocarpus reesii 1704]
Length = 263
Score = 332 bits (852), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/220 (76%), Positives = 181/220 (82%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 219
>gi|343429784|emb|CBQ73356.1| probable 40S ribosomal protein S3 [Sporisorium reilianum SRZ2]
Length = 252
Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 167/233 (71%), Positives = 190/233 (81%), Gaps = 9/233 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ ISKKRKFVADGVF AELNE TREL+E+GYSG EVRVT RTEIIIRAT TQ VLG+
Sbjct: 3 SANISKKRKFVADGVFAAELNEFFTRELSEEGYSGCEVRVTHARTEIIIRATHTQEVLGD 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKFP+NS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRA YG
Sbjct: 63 KGRRIRELTALVQKRFKFPDNSLELYAEKVQNRGLHAVAQCESLRYKLLGGLAVRRAAYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQPV +++D AVR
Sbjct: 123 VLRFVMESGAKGCE--------VVISGKLRAARAKSMKFTDGFMIHSGQPVKDFVDEAVR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV-APATAT 233
HVL++QGVLGIKVKIM WD +G+ G PLPD VTI KEE + AP + +
Sbjct: 175 HVLMKQGVLGIKVKIMQGWDPEGRAGKPFPLPDAVTILEPKEEAPILAPVSES 227
>gi|357016985|gb|AET50521.1| hypothetical protein [Eimeria tenella]
Length = 233
Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 165/226 (73%), Positives = 189/226 (83%), Gaps = 8/226 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T ISKKRKFV DGVF AELNE L+R LAEDGYSGVEVRVTP+RTEIIIRATRT+ VLGEK
Sbjct: 5 TNISKKRKFVNDGVFQAELNEFLSRTLAEDGYSGVEVRVTPIRTEIIIRATRTREVLGEK 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS+VQKRF FP +SVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGV
Sbjct: 65 GRRIRELTSLVQKRFGFPPDSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR IMESGAKGCE V+VSGKLRAQRAKSMKF+DGY+IS+G+P ++ A+R
Sbjct: 125 LRHIMESGAKGCE--------VVVSGKLRAQRAKSMKFRDGYIISTGEPRQRFVSQAIRS 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
V LRQGVLG++V IML +D +GK GP+TPLPD + + K E+ VA
Sbjct: 177 VQLRQGVLGVRVSIMLPFDPEGKMGPSTPLPDTIIVSEPKPELPVA 222
>gi|400595104|gb|EJP62914.1| cytoplasmic ribosomal protein subunit S3 [Beauveria bassiana ARSEF
2860]
Length = 257
Score = 332 bits (852), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 168/223 (75%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
QISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT+TQ VLGE
Sbjct: 5 GAQISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATQTQEVLGE 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYG
Sbjct: 65 QGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP N++ID+A R
Sbjct: 125 VLRFIMESDAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPKNDFIDTATR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
HVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 177 HVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIDPKEE 219
>gi|443898722|dbj|GAC76056.1| phosphatidylserine decarboxylase [Pseudozyma antarctica T-34]
Length = 252
Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 167/233 (71%), Positives = 190/233 (81%), Gaps = 9/233 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ ISKKRKFVADGVF AELNE TREL+E+GYSG EVRVT RTEIIIRAT TQ VLG+
Sbjct: 3 SANISKKRKFVADGVFAAELNEFFTRELSEEGYSGCEVRVTHARTEIIIRATHTQEVLGD 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKFP+NS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRA YG
Sbjct: 63 KGRRIRELTALVQKRFKFPDNSLELYAEKVQNRGLHAVAQCESLRYKLLGGLAVRRAAYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQPV +++D AVR
Sbjct: 123 VLRFVMESGAKGCE--------VVISGKLRAARAKSMKFTDGFMIHSGQPVKDFVDEAVR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV-APATAT 233
HVL++QGVLGIKVKIM WD +G+ G PLPD VTI KEE + AP + +
Sbjct: 175 HVLMKQGVLGIKVKIMQGWDPEGRAGKPFPLPDAVTILEPKEEAPILAPVSES 227
>gi|336370495|gb|EGN98835.1| hypothetical protein SERLA73DRAFT_181508 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383275|gb|EGO24424.1| hypothetical protein SERLADRAFT_467690 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 170/234 (72%), Positives = 188/234 (80%), Gaps = 9/234 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MAAHISKKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQFRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATAT 233
RHVLLRQGVLGIKVKIM D +G GP PLPD V I P +++ P++ +
Sbjct: 173 RHVLLRQGVLGIKVKIMKGSDSEGLVGPRKPLPDSVQIIEPPVDKIVSEPSSES 226
>gi|396493922|ref|XP_003844188.1| similar to 40S ribosomal protein S3 [Leptosphaeria maculans JN3]
gi|312220768|emb|CBY00709.1| similar to 40S ribosomal protein S3 [Leptosphaeria maculans JN3]
Length = 264
Score = 332 bits (851), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 186/230 (80%), Gaps = 9/230 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+ ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+
Sbjct: 6 SAISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQ 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGV
Sbjct: 66 GRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGV 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RH
Sbjct: 126 LRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
VLLRQGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 178 VLLRQGVLGIKVKIMRGSDPEGKAGPSQTLPDSVTIIEPKEEQPVVQPMS 227
>gi|392571524|gb|EIW64696.1| 40S ribosomal protein S3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 167/232 (71%), Positives = 189/232 (81%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AELN+ TREL+E+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSGQISKKRKFVADGVFRAELNDFFTRELSEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFP+NS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPDNSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPALDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHV+LRQGVLGIKVKIM WD +G+ GP PLPD V I P +++ P +
Sbjct: 173 RHVMLRQGVLGIKVKIMKGWDPEGQLGPRKPLPDSVQILEPPLDKIVAEPTS 224
>gi|335345828|gb|AEH41494.1| 40S ribosomal protein S3 [Endocarpon pusillum]
Length = 264
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 183/228 (80%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHV
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVF 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D +GK GP PD VT I P +E+ V P +
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKSGPQKSFPDSVTIIEPKEEQPVVQPMS 227
>gi|209693449|ref|NP_001129413.1| ribosomal protein S3 [Acyrthosiphon pisum]
gi|239790667|dbj|BAH71881.1| ACYPI005949 [Acyrthosiphon pisum]
Length = 245
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/231 (70%), Positives = 187/231 (80%), Gaps = 9/231 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A S K++FV+DG+ AELNE LTRELAEDGYSGV+VR P RTEI+I ATRTQNVLG+
Sbjct: 3 AKTTSVKKRFVSDGMLRAELNEFLTRELAEDGYSGVDVRAAPSRTEIVISATRTQNVLGD 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELTS++QKRF F + +VEL+AEKV RGLCA+AQAESLRYKL+GGLAVRRACYG
Sbjct: 63 KGRRIRELTSLIQKRFDFKDKAVELFAEKVAQRGLCAVAQAESLRYKLIGGLAVRRACYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y++ A R
Sbjct: 123 VLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNVATR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY-VAPAT 231
HVLLRQGVLGIKVKIML WDQ GK GP PLPD V++ KEE+ +AP +
Sbjct: 175 HVLLRQGVLGIKVKIMLPWDQTGKLGPKKPLPDNVSVAEPKEEILPIAPTS 225
>gi|46122111|ref|XP_385609.1| hypothetical protein FG05433.1 [Gibberella zeae PH-1]
Length = 255
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 185/229 (80%), Gaps = 9/229 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+G
Sbjct: 2 RISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQG 61
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVL
Sbjct: 62 RRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVL 121
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHV
Sbjct: 122 RFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHV 173
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LLRQGVLGIKVKIM D +GK GP LPD VT I P +E+ + P +
Sbjct: 174 LLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDAVTIIEPKEEQAVLQPVS 222
>gi|154301908|ref|XP_001551365.1| 40S ribosomal protein S3 [Botryotinia fuckeliana B05.10]
gi|347836345|emb|CCD50917.1| similar to 40S ribosomal protein S3 [Botryotinia fuckeliana]
Length = 263
Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 185/228 (81%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 10 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 69
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 70 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 129
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 130 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHVL 181
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
L+QGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 182 LKQGVLGIKVKIMRGSDPEGKSGPSKGLPDSVTIIEPKEEQSVVQPMS 229
>gi|169616949|ref|XP_001801889.1| hypothetical protein SNOG_11650 [Phaeosphaeria nodorum SN15]
gi|111059574|gb|EAT80694.1| hypothetical protein SNOG_11650 [Phaeosphaeria nodorum SN15]
Length = 266
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 185/228 (81%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDEATRHVL 179
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 180 LRQGVLGIKVKIMRGSDPEGKAGPSKTLPDSVTIIEPKEEQPVVQPMS 227
>gi|156051430|ref|XP_001591676.1| 40S ribosomal protein S3 [Sclerotinia sclerotiorum 1980 UF-70]
gi|154704900|gb|EDO04639.1| ribosomal protein S3 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 263
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 185/228 (81%), Gaps = 9/228 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 10 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 69
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 70 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 129
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 130 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHVL 181
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
L+QGVLGIKVKIM D +GK GP+ LPD VT I P +E+ V P +
Sbjct: 182 LKQGVLGIKVKIMRGSDPEGKSGPSKGLPDSVTIIEPKEEQSVVQPMS 229
>gi|296825392|ref|XP_002850808.1| 40S ribosomal protein S3 [Arthroderma otae CBS 113480]
gi|238838362|gb|EEQ28024.1| 40S ribosomal protein S3 [Arthroderma otae CBS 113480]
Length = 266
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 180/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 9 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 68
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 69 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 128
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 129 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFIDHATRHVL 180
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 181 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 220
>gi|315055209|ref|XP_003176979.1| 40S ribosomal protein S3 [Arthroderma gypseum CBS 118893]
gi|311338825|gb|EFQ98027.1| 30S ribosomal protein S14p/S29e [Arthroderma gypseum CBS 118893]
Length = 266
Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 180/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 9 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 68
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 69 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 128
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 129 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFIDHATRHVL 180
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 181 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIEPKEE 220
>gi|302508557|ref|XP_003016239.1| hypothetical protein ARB_05637 [Arthroderma benhamiae CBS 112371]
gi|302657285|ref|XP_003020367.1| hypothetical protein TRV_05538 [Trichophyton verrucosum HKI 0517]
gi|291179808|gb|EFE35594.1| hypothetical protein ARB_05637 [Arthroderma benhamiae CBS 112371]
gi|291184196|gb|EFE39749.1| hypothetical protein TRV_05538 [Trichophyton verrucosum HKI 0517]
Length = 266
Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 180/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 9 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 68
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 69 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 128
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 129 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFIDHATRHVL 180
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 181 LRQGVLGIKVKIMRGSDPEGKSGPQKTLPDSVTIIEPKEE 220
>gi|327307562|ref|XP_003238472.1| 40S ribosomal protein S3 [Trichophyton rubrum CBS 118892]
gi|326458728|gb|EGD84181.1| 40S ribosomal protein S3 [Trichophyton rubrum CBS 118892]
gi|326470843|gb|EGD94852.1| 40S ribosomal protein S3 [Trichophyton tonsurans CBS 112818]
gi|326478407|gb|EGE02417.1| 40S ribosomal protein S3 [Trichophyton equinum CBS 127.97]
Length = 266
Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 180/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 9 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 68
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 69 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 128
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 129 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFIDHATRHVL 180
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 181 LRQGVLGIKVKIMRGSDPEGKSGPQKTLPDSVTIIEPKEE 220
>gi|354473311|ref|XP_003498879.1| PREDICTED: 40S ribosomal protein S3-like [Cricetulus griseus]
Length = 240
Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 185/234 (79%), Gaps = 13/234 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRE D Y GVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRE---DSYLGVEVRVTPTRTEIIILATRTQNVLG 57
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG RIRELT+VVQKRF FPE SVELYAEKV R LCAIAQAESLRYKLLGGLAVR ACY
Sbjct: 58 EKGPRIRELTAVVQKRFGFPEGSVELYAEKVATRRLCAIAQAESLRYKLLGGLAVRSACY 117
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 118 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 169
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
R+VLLRQ VLGIKVKIML W+ GK P PLPD V+I K+E+ P T S
Sbjct: 170 RYVLLRQAVLGIKVKIMLPWETSGKISPQKPLPDHVSIVEPKDEIL--PTTPIS 221
>gi|348670844|gb|EGZ10665.1| hypothetical protein PHYSODRAFT_287105 [Phytophthora sojae]
Length = 249
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/226 (72%), Positives = 187/226 (82%), Gaps = 8/226 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFVADGVF+AELNE+L REL DGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIR LTSVVQKRF FP+ +VELYAE+V NRGLC+ AQAESL+Y+LLGGLAVRRACY
Sbjct: 61 EKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V+RF+ME+GAKG + VIVSGKLRAQRAK+MKF +GYM+ +G EY+D+AV
Sbjct: 121 SVVRFVMEAGAKGVQ--------VIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY 226
RHVL+RQGVLG+KV IML D GKQGP L D+VTI KEEVY
Sbjct: 173 RHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVY 218
>gi|403415257|emb|CCM01957.1| predicted protein [Fibroporia radiculosa]
Length = 260
Score = 329 bits (844), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 187/232 (80%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M +QISKKRKFVADGVF AELN+ TREL+E+GYSG +VRVT RTEIIIRAT TQ VLG
Sbjct: 1 MTSQISKKRKFVADGVFRAELNDFFTRELSEEGYSGCDVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT++VQKRFKFPENS+ELYAEKV +RGL AIAQ ESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTALVQKRFKFPENSLELYAEKVQSRGLSAIAQCESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MES AKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESNAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAVDFVDYAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHV+LRQGVLGIKVKIM D G+ GP PLPD V I P +++ P +
Sbjct: 173 RHVMLRQGVLGIKVKIMKGTDPDGQSGPRKPLPDSVQILEPPLDKIVAEPTS 224
>gi|409083492|gb|EKM83849.1| hypothetical protein AGABI1DRAFT_32206 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 673
Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 187/226 (82%), Gaps = 9/226 (3%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
KKRKFVADGVF AELNE TRELAE+GYSG +VRVT RTEIIIRAT TQ VLGEKGRRI
Sbjct: 415 KKRKFVADGVFRAELNEFFTRELAEEGYSGCDVRVTHARTEIIIRATHTQEVLGEKGRRI 474
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
RELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRYKLLGGLAVRRACYGVLRF+
Sbjct: 475 RELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRYKLLGGLAVRRACYGVLRFV 534
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV E++D AVRHVLL+
Sbjct: 535 MESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVREFVDYAVRHVLLK 586
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT 231
QGVLGIKVKIM D +G+ GP PLPD V I+ P ++V + P++
Sbjct: 587 QGVLGIKVKIMKGHDPEGQLGPKKPLPDAVQIYEPPVDKVVLEPSS 632
>gi|388507388|gb|AFK41760.1| unknown [Lotus japonicus]
Length = 258
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/234 (70%), Positives = 194/234 (82%), Gaps = 11/234 (4%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
AT ISKKRK +ADGVF+AELNE+LTREL E+GYSGVEVRVTP+RTEIIIRATRTQNVLGE
Sbjct: 3 ATNISKKRKIIADGVFYAELNELLTRELGEEGYSGVEVRVTPLRTEIIIRATRTQNVLGE 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELTS+VQKRF FPE +VELYAE+V+NR L AIAQAESLR+KLLGGLAVRRACYG
Sbjct: 63 KGRRIRELTSLVQKRFNFPEGNVELYAERVSNRALSAIAQAESLRFKLLGGLAVRRACYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLR+IME+GAKG E +++SGKLRA RAK+MKF+DGYMI SG VN Y+D AV+
Sbjct: 123 VLRYIMENGAKGVE--------IVISGKLRAARAKAMKFRDGYMIKSGDAVNHYVDYAVK 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTT-PLPDLVTIHPLKEE--VYVAPATA 232
H+ L+QGVLGIKVKIM+ +D GK+G +T D+VT+ KEE + V P T
Sbjct: 175 HIQLKQGVLGIKVKIMMPYDPTGKEGGSTVKQSDVVTVTEPKEETALSVPPKTG 228
>gi|294932119|ref|XP_002780125.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239890023|gb|EER11920.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 261
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/231 (70%), Positives = 192/231 (83%), Gaps = 9/231 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL VRRA YGVL
Sbjct: 69 RRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPVRRAAYGVL 128
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y+D A+R+V
Sbjct: 129 RFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMYVDQAIRNV 180
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
+RQG+LGI+VKIM+ +D +GK GP T LPD +TIH KE+ V P AT+
Sbjct: 181 DMRQGILGIRVKIMMAYDPEGKSGPKTRLPDDITIHEPKEDT-VFPIEATT 230
>gi|294875936|ref|XP_002767474.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239869132|gb|EER00192.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 261
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/231 (70%), Positives = 192/231 (83%), Gaps = 9/231 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL VRRA YGVL
Sbjct: 69 RRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPVRRAAYGVL 128
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y+D A+R+V
Sbjct: 129 RFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMYVDQAIRNV 180
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
+RQG+LGI+VKIM+ +D +GK GP T LPD +TIH KE+ V P AT+
Sbjct: 181 DMRQGILGIRVKIMMAYDPEGKSGPKTRLPDDITIHEPKEDT-VFPIEATT 230
>gi|301107834|ref|XP_002902999.1| 40S ribosomal protein S3-3 [Phytophthora infestans T30-4]
gi|262098117|gb|EEY56169.1| 40S ribosomal protein S3-3 [Phytophthora infestans T30-4]
Length = 246
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/232 (71%), Positives = 189/232 (81%), Gaps = 11/232 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFVADGVF+AELNE+L REL DGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MAANISKKRKFVADGVFYAELNELLQRELYGDGYSGVEVRVTPMRTEIIIRATRTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+RIR LTSVVQKRF FP+ +VELYAE+V NRGLC+ AQAESL+Y+LLGGLAVRRACY
Sbjct: 61 EKGQRIRALTSVVQKRFNFPDGAVELYAERVANRGLCSQAQAESLKYRLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V+RF+ME+GAKG + VIVSGKLRAQRAK+MKF +GYM+ +G EY+D+AV
Sbjct: 121 SVVRFVMEAGAKGVQ--------VIVSGKLRAQRAKAMKFNEGYMVKTGNASQEYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV---YVAP 229
RHVL+RQGVLG+KV IML D GKQGP L D+VTI KEEV YV P
Sbjct: 173 RHVLMRQGVLGVKVSIMLPHDPTGKQGPKRALDDVVTILEPKEEVHRPYVEP 224
>gi|296094|emb|CAA51425.1| ribosomal protein S3 [Drosophila melanogaster]
Length = 246
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/235 (71%), Positives = 186/235 (79%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP TEIII AT+TQ VL EKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL G LAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGELAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>gi|353240330|emb|CCA72204.1| probable 40S ribosomal protein S3 [Piriformospora indica DSM 11827]
Length = 268
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/232 (71%), Positives = 186/232 (80%), Gaps = 9/232 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ QISKKRKFVADGVF AEL E RELAE+GYSG EVRVT RTEIIIRAT TQ VLG
Sbjct: 1 MSAQISKKRKFVADGVFRAELGEFFMRELAEEGYSGCEVRVTHARTEIIIRATHTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFPE S+ELYAEKV +RGL A+AQ ESLRYKLLGGLAVRRA Y
Sbjct: 61 EKGRRIRELTSLVQKRFKFPEGSLELYAEKVLHRGLSAVAQCESLRYKLLGGLAVRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MES AKGCE V++SGKLRA RAKSMKF +G+MI SGQP +++D AV
Sbjct: 121 GVLRFVMESNAKGCE--------VVISGKLRAARAKSMKFTEGFMIHSGQPARDFVDEAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
RHV+LRQGVLGIKVKIM WD G+ GP PLPD+V I P ++V+ P +
Sbjct: 173 RHVMLRQGVLGIKVKIMKGWDPNGETGPRKPLPDMVQITEPGIDKVFAEPTS 224
>gi|209879906|ref|XP_002141393.1| 40S ribosomal protein S3 [Cryptosporidium muris RN66]
gi|209556999|gb|EEA07044.1| 40S ribosomal protein S3, putative [Cryptosporidium muris RN66]
Length = 221
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/224 (72%), Positives = 189/224 (84%), Gaps = 9/224 (4%)
Query: 1 MATQ-ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MA Q ISKKRKFV DGVF AELNE L+ LAEDGY+GVEVRVTP+RTEIIIRATRT+ VL
Sbjct: 1 MAPQVISKKRKFVNDGVFEAELNEFLSCTLAEDGYAGVEVRVTPIRTEIIIRATRTREVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
G KGRRIRELTS+VQKRF FP SVEL+AE++ NRGLCA+AQAESLRYKLL G+AVRRAC
Sbjct: 61 GVKGRRIRELTSLVQKRFNFPAGSVELFAERIENRGLCAMAQAESLRYKLLKGVAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLR +MESGAKGCE VIVSGKLRAQRAKSMKF+DGYMI++GQP +Y+D A
Sbjct: 121 YGVLRHVMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIATGQPFRDYVDKA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
VR+VL++QGVLG++VKIML +D +GK GP+ PLPD + + KE
Sbjct: 173 VRNVLMKQGVLGVQVKIMLPYDPEGKVGPSNPLPDAIMVREPKE 216
>gi|38048231|gb|AAR10018.1| similar to Drosophila melanogaster RpS3, partial [Drosophila
yakuba]
Length = 215
Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 162/214 (75%), Positives = 179/214 (83%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
LRQGVLGIKVK+ML +D K K GP P+PD V++
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPVPDNVSV 212
>gi|66362866|ref|XP_628399.1| 40S ribosomal protein S3, KH domain [Cryptosporidium parvum Iowa
II]
gi|46229434|gb|EAK90252.1| 40S ribosomal protein S3, KH domain [Cryptosporidium parvum Iowa
II]
gi|323508759|dbj|BAJ77273.1| cgd7_2250 [Cryptosporidium parvum]
Length = 221
Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/224 (71%), Positives = 190/224 (84%), Gaps = 9/224 (4%)
Query: 1 MATQ-ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MA Q ISKKRKF+ DGVF AELNE L+ LAEDGY+GVEVRVTP++TEIIIRATRT+ VL
Sbjct: 1 MAPQLISKKRKFINDGVFEAELNEFLSCTLAEDGYAGVEVRVTPIKTEIIIRATRTREVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
G KGRRIRELTS++QKRF FPE SVEL+AE++ NRGLCA+AQAESLRYKLL G+AVRRAC
Sbjct: 61 GVKGRRIRELTSLIQKRFNFPEGSVELFAERIENRGLCAMAQAESLRYKLLKGVAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLR +MESGAKGCE VIVSGKLRAQRAKSMKF+DGYMI++GQP +++D A
Sbjct: 121 YGVLRHVMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIATGQPFRDFVDKA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
VR+V+++QGVLG++VKIML +D +GK GP+ PLPD V + KE
Sbjct: 173 VRNVMMKQGVLGVQVKIMLPYDPEGKTGPSKPLPDAVMVREPKE 216
>gi|67614912|ref|XP_667397.1| ribosomal protein [Cryptosporidium hominis TU502]
gi|54658527|gb|EAL37164.1| ribosomal protein [Cryptosporidium hominis]
Length = 221
Score = 325 bits (834), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 160/224 (71%), Positives = 190/224 (84%), Gaps = 9/224 (4%)
Query: 1 MATQ-ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MA Q ISKKRKF+ DGVF AELNE L+ LAEDGY+GVEVRVTP++TEIIIRATRT+ VL
Sbjct: 1 MAPQLISKKRKFINDGVFEAELNEFLSCTLAEDGYAGVEVRVTPIKTEIIIRATRTREVL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
G KGRRIRELTS++QKRF FPE SVEL+AE++ NRGLCA+AQAESLRYKLL G+AVRRAC
Sbjct: 61 GVKGRRIRELTSLIQKRFNFPEGSVELFAERIENRGLCAMAQAESLRYKLLKGVAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLR +MESGAKGCE VIVSGKLRAQRAKSMKF+DGYMI++GQP +++D A
Sbjct: 121 YGVLRHVMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIATGQPFRDFVDKA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
VR+V+++QGVLG++VKIML +D +GK GP+ PLPD V + KE
Sbjct: 173 VRNVMMKQGVLGVQVKIMLPYDPEGKTGPSKPLPDAVMVREPKE 216
>gi|384483178|gb|EIE75358.1| 40S ribosomal protein S3 [Rhizopus delemar RA 99-880]
Length = 231
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/225 (72%), Positives = 185/225 (82%), Gaps = 11/225 (4%)
Query: 12 VADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
VADGVF+AELNE LTRELAE GY+GVEVRVTP RTEIIIRAT TQNVLGEKGRRIRELT+
Sbjct: 4 VADGVFYAELNEFLTRELAEAGYAGVEVRVTPARTEIIIRATHTQNVLGEKGRRIRELTT 63
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
+VQKRFKFPEN+VELYAE+V NRGLCAIAQ ES+++KLL GLAVRRACYGV+RF+MESGA
Sbjct: 64 LVQKRFKFPENAVELYAERVQNRGLCAIAQCESVKFKLLNGLAVRRACYGVIRFVMESGA 123
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLG 191
KGCE V+VSGK+RA RAK+MKF DG+MI SG P E+I +AVRHV LRQGVLG
Sbjct: 124 KGCE--------VVVSGKVRAARAKAMKFADGFMIHSGNPAREFITTAVRHVDLRQGVLG 175
Query: 192 IKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
IKVKIML+ D G+ GP LPD+VTI K+E AP T S +
Sbjct: 176 IKVKIMLDNDPTGRNGPKQTLPDIVTILEPKDE---APITEPSAQ 217
>gi|149068847|gb|EDM18399.1| rCG40478, isoform CRA_i [Rattus norvegicus]
Length = 189
Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/193 (85%), Positives = 170/193 (88%), Gaps = 8/193 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIK 193
RHVLLRQGVLGIK
Sbjct: 173 RHVLLRQGVLGIK 185
>gi|405973234|gb|EKC37958.1| 40S ribosomal protein S3 [Crassostrea gigas]
Length = 237
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/235 (72%), Positives = 181/235 (77%), Gaps = 21/235 (8%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FVADGVF AELN LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 17 FVADGVFKAELNNFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 76
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
SVVQKRF FPE +VE RGLCAIAQ ESLRYKL+GGLAVRRACYGVLRFIMESG
Sbjct: 77 SVVQKRFNFPEGTVE--------RGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESG 128
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
AKGCE V+VSGKLR QRAKSMKF DG MI SG P+N+Y+D+AVRHVLLRQGVL
Sbjct: 129 AKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAVRHVLLRQGVL 180
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT----ATSIELPVA 240
GIKVKIML WD GK GP PLPD V+ + P E V P + A E P A
Sbjct: 181 GIKVKIMLPWDPSGKIGPKRPLPDHVSVVEPKDEAVPAHPYSEQKGAKPTEPPAA 235
>gi|167519583|ref|XP_001744131.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777217|gb|EDQ90834.1| predicted protein [Monosiga brevicollis MX1]
Length = 252
Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 160/221 (72%), Positives = 183/221 (82%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF AELNE+ RELAEDGY+GVE++ TP TEI+I ATRTQ+VLGEKG
Sbjct: 5 QMSKKRKFVADGVFKAELNELFMRELAEDGYAGVEIKKTPKSTEIVILATRTQHVLGEKG 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT+ +QKRF F ++ VEL+AEKV NRGLCA+AQ E+LRYKL GGLAVRRACYGV+
Sbjct: 65 RRIRELTAFIQKRFGFQKDEVELFAEKVANRGLCAVAQCENLRYKLTGGLAVRRACYGVV 124
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+MESGAKGCE VIVSGKLRAQRAK+MKF DG+MISSG P EYID+AVRHV
Sbjct: 125 RFVMESGAKGCE--------VIVSGKLRAQRAKAMKFGDGFMISSGNPTREYIDTAVRHV 176
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
+RQG++GIKVKIML D GK GP PLPD +TI KEE
Sbjct: 177 PMRQGMIGIKVKIMLPHDPSGKTGPKAPLPDAITILEAKEE 217
>gi|324513448|gb|ADY45526.1| 40S ribosomal protein S3 [Ascaris suum]
Length = 249
Score = 323 bits (828), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/218 (75%), Positives = 177/218 (81%), Gaps = 8/218 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A QI+KKRK V DGVF AELN L +ELAEDGYSGVEVR TP R E+II ATRTQ+VLGE
Sbjct: 4 AQQITKKRKAVQDGVFKAELNNFLMKELAEDGYSGVEVRRTPARAEVIIMATRTQSVLGE 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GRRIRELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYG
Sbjct: 64 RGRRIRELTSVVQKRFGFAEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYG 123
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMES A+GCE VIVSGKLR QRAKSMKF DG MI SGQPVN+YI AVR
Sbjct: 124 VLRFIMESSAQGCE--------VIVSGKLRGQRAKSMKFVDGLMIHSGQPVNDYIQQAVR 175
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
HV LRQGVLGIKVKIML D KG+ GP LPD + I
Sbjct: 176 HVQLRQGVLGIKVKIMLPHDPKGQMGPRGALPDQIHIQ 213
>gi|322693782|gb|EFY85631.1| 40S ribosomal protein S3, putative [Metarhizium acridum CQMa 102]
Length = 255
Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/221 (73%), Positives = 180/221 (81%), Gaps = 9/221 (4%)
Query: 12 VADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
VADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT+TQ VLGE+GRRIRELTS
Sbjct: 13 VADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATQTQEVLGEQGRRIRELTS 72
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLRFIMESGA
Sbjct: 73 LIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLRFIMESGA 132
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLG 191
KGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+ID+A RHVLLRQGVLG
Sbjct: 133 KGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDTATRHVLLRQGVLG 184
Query: 192 IKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
IKVKIM D GK GP+ LPD VTI P +E+V + P +
Sbjct: 185 IKVKIMRGSDPDGKAGPSKSLPDAVTIFEPKEEQVVLQPVS 225
>gi|401881615|gb|EJT45911.1| ribosomal protein S3 [Trichosporon asahii var. asahii CBS 2479]
gi|406702723|gb|EKD05674.1| ribosomal protein S3 [Trichosporon asahii var. asahii CBS 8904]
Length = 248
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+A Q+SKKRKFVADGVF AEL E TRELAE+GYSG EVRVT RTEIIIRAT TQ VLG
Sbjct: 3 VAHQVSKKRKFVADGVFQAELGEFFTRELAEEGYSGCEVRVTHARTEIIIRATHTQEVLG 62
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+GRRIREL ++V+KRF+FPENS+ELYAEKV RGL A+AQAESLRYKLLGGLA+RRACY
Sbjct: 63 HQGRRIRELKALVEKRFRFPENSLELYAEKVQYRGLSAVAQAESLRYKLLGGLAMRRACY 122
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLR++MESGAKGCE V+VSGKLRA RAKSMKF DG++I SGQP ++ID AV
Sbjct: 123 GVLRYVMESGAKGCE--------VVVSGKLRAARAKSMKFSDGFLIHSGQPSVDFIDYAV 174
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLLRQGVLGIKVKIM D +G+ GP PLPD VT+
Sbjct: 175 RHVLLRQGVLGIKVKIMRPHDPEGRMGPAHPLPDQVTL 212
>gi|223999667|ref|XP_002289506.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974714|gb|EED93043.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 270
Score = 322 bits (825), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 162/222 (72%), Positives = 182/222 (81%), Gaps = 8/222 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+++S KR+FVADGVF+AELNE+LTRELAEDGY+GVEVR TP RTEIIIRAT+TQNVLGEK
Sbjct: 7 SKMSIKRRFVADGVFYAELNELLTRELAEDGYAGVEVRTTPHRTEIIIRATKTQNVLGEK 66
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G+RIRELTSVVQKRF F E +VELYAE+V NRGLCA AQAESL++KLL GLAVRRACYGV
Sbjct: 67 GQRIRELTSVVQKRFDFAEGAVELYAERVQNRGLCAQAQAESLKFKLLAGLAVRRACYGV 126
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
+RF+ME+ AKGCE VIVSGKLR QRAK MKF DGYMI +G Y D AVRH
Sbjct: 127 VRFVMEASAKGCE--------VIVSGKLRGQRAKGMKFGDGYMIKTGHAGQVYTDVAVRH 178
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
VL+RQGV+GIKV IML D KG QGP PL D+VTI KEE
Sbjct: 179 VLMRQGVIGIKVAIMLPHDPKGVQGPKIPLDDVVTILEPKEE 220
>gi|401408051|ref|XP_003883474.1| SSU ribosomal protein S3P, related [Neospora caninum Liverpool]
gi|325117891|emb|CBZ53442.1| SSU ribosomal protein S3P, related [Neospora caninum Liverpool]
Length = 235
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 184/221 (83%), Gaps = 8/221 (3%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
KKRKFV DGVF AELNE L+ L+EDGYSGVEVRVTP+RTEIIIRATRT+ VLG+KGRRI
Sbjct: 9 KKRKFVKDGVFQAELNEFLSCTLSEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRI 68
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
RELTSVVQKRF F +SVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGVLR I
Sbjct: 69 RELTSVVQKRFGFAPDSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGVLRHI 128
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLRAQRAKSMKFKDGY+IS+G+P ++D A+R V LR
Sbjct: 129 MESGAKGCE--------VVVSGKLRAQRAKSMKFKDGYLISTGEPSKMFVDQAIRSVQLR 180
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
QGVLG++VKIML D +GK+GP TPLPD + + K E+ V
Sbjct: 181 QGVLGVRVKIMLPHDPEGKRGPATPLPDTIIVMDPKPEIPV 221
>gi|84996723|ref|XP_953083.1| 40S ribosomal protein S3 [Theileria annulata strain Ankara]
gi|65304079|emb|CAI76458.1| 40S ribosomal protein S3, putative [Theileria annulata]
Length = 216
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/213 (75%), Positives = 183/213 (85%), Gaps = 8/213 (3%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SK+++F+ DGVF AELNE L+R LAEDGYSGVE+R+TPVRTEIIIRATRT+ VLGEK RR
Sbjct: 7 SKQKRFINDGVFNAELNEFLSRTLAEDGYSGVELRITPVRTEIIIRATRTREVLGEKARR 66
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELTS+VQKRF F +SVELYAE+V NRGLCA+AQAESLRYKLL GLA+RRA YGVLR
Sbjct: 67 IRELTSLVQKRFGFSSDSVELYAERVENRGLCAMAQAESLRYKLLKGLAIRRAAYGVLRQ 126
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+GQP EY+++AVR V L
Sbjct: 127 IMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYIISTGQPAQEYVNTAVRSVQL 178
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RQGVLGIKVKIML +D +G+ GP+T LPD VT+
Sbjct: 179 RQGVLGIKVKIMLPYDPEGRLGPSTLLPDTVTV 211
>gi|187233664|gb|ACD01096.1| ribosomal protein S1a [Adineta vaga]
Length = 215
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 181/220 (82%), Gaps = 10/220 (4%)
Query: 1 MAT--QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV 58
MAT ISKKRKF+ +GVF AELNE TRELAEDGYSG+E+RVTP RTEIII AT+TQ V
Sbjct: 1 MATTANISKKRKFIREGVFHAELNEFFTRELAEDGYSGLEIRVTPQRTEIIIMATKTQAV 60
Query: 59 LGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRA 118
LGEKGRRIRELTSV+QKRF +PENS+EL+A+KV RGLCAIAQAESLRYKL+GGL VRRA
Sbjct: 61 LGEKGRRIRELTSVIQKRFGYPENSIELFAQKVVTRGLCAIAQAESLRYKLMGGLPVRRA 120
Query: 119 CYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
CYGVLRFIMESGA+GCE +IVSGKLR QRAK+MKF DG MI SG PVN+Y+
Sbjct: 121 CYGVLRFIMESGAQGCE--------IIVSGKLRGQRAKAMKFIDGLMIHSGDPVNDYVQY 172
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
AVRHVLLRQGVLGIKVKIML D K +G PLPD + I
Sbjct: 173 AVRHVLLRQGVLGIKVKIMLPHDPKEGKGVKKPLPDHIQI 212
>gi|67527620|ref|XP_661691.1| hypothetical protein AN4087.2 [Aspergillus nidulans FGSC A4]
gi|40739785|gb|EAA58975.1| hypothetical protein AN4087.2 [Aspergillus nidulans FGSC A4]
gi|259481325|tpe|CBF74736.1| TPA: hypothetical protein similar to 40s ribosomal protein s3
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 264
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/220 (75%), Positives = 177/220 (80%), Gaps = 10/220 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+I T TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDI--STTHTQEVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 66 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP E+IDSA RHVL
Sbjct: 126 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKEFIDSATRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 178 LRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 217
>gi|71028826|ref|XP_764056.1| 40S ribosomal protein S3 [Theileria parva strain Muguga]
gi|68351010|gb|EAN31773.1| 40S ribosomal protein S3, putative [Theileria parva]
Length = 216
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/213 (75%), Positives = 183/213 (85%), Gaps = 8/213 (3%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SK+++F+ DGVF AELNE L+R LAEDGYSGVE+R+TPVRTEIIIRATRT+ VLGEK RR
Sbjct: 8 SKQKRFINDGVFNAELNEFLSRTLAEDGYSGVELRITPVRTEIIIRATRTREVLGEKARR 67
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELTS+VQKRF F +SVELYAE+V NRGLCA+AQAESLRYKLL GLA+RRA YGVLR
Sbjct: 68 IRELTSLVQKRFGFSSDSVELYAERVENRGLCAMAQAESLRYKLLKGLAIRRAAYGVLRQ 127
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+GQP EY+++AVR V L
Sbjct: 128 IMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYIISTGQPAQEYVNTAVRSVQL 179
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RQGVLGIKVKIML +D +G+ GP+T LPD VT+
Sbjct: 180 RQGVLGIKVKIMLPYDPEGRLGPSTLLPDTVTV 212
>gi|403223989|dbj|BAM42119.1| 40S ribosomal protein S3 [Theileria orientalis strain Shintoku]
Length = 216
Score = 321 bits (823), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/213 (75%), Positives = 183/213 (85%), Gaps = 8/213 (3%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SK+++F+ DGVF AELNE L+R LAEDGYSGVE+R+TPVRTEIIIRATRT+ VLGEK RR
Sbjct: 8 SKQKRFINDGVFNAELNEFLSRTLAEDGYSGVELRITPVRTEIIIRATRTREVLGEKARR 67
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELTS+VQKRF F +SVELYAE+V NRGLCA+AQAESLRYKLL GLAVRRA YGVLR
Sbjct: 68 IRELTSLVQKRFGFSSDSVELYAERVENRGLCAMAQAESLRYKLLKGLAVRRAAYGVLRH 127
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+GQP +Y+++AVR V L
Sbjct: 128 IMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYIISTGQPAQQYVNTAVRSVQL 179
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RQGVLGIKVKIML +D +G+ GP+T LPD VT+
Sbjct: 180 RQGVLGIKVKIMLPYDPEGRIGPSTLLPDTVTV 212
>gi|326521618|dbj|BAK00385.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/242 (67%), Positives = 188/242 (77%), Gaps = 18/242 (7%)
Query: 1 MAT--QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV 58
MAT +SKKRKF+ +GVF AELNE TRELAEDGYSG+E+RVTP RTEIII AT+TQ V
Sbjct: 1 MATTANVSKKRKFIREGVFHAELNEFFTRELAEDGYSGLEIRVTPQRTEIIIMATKTQAV 60
Query: 59 LGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRA 118
LGEKGRRIRELTSV+QKRF +PENS+EL+A+KV +RGLCAIAQAESLRYKL+GG VRRA
Sbjct: 61 LGEKGRRIRELTSVIQKRFGYPENSIELFAQKVVSRGLCAIAQAESLRYKLMGGFPVRRA 120
Query: 119 CYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
CYGVLRFIM+SGA+GCE ++VSGKLR QRAK+MKF DG MI SG PVN+Y+
Sbjct: 121 CYGVLRFIMDSGAQGCE--------IVVSGKLRGQRAKAMKFIDGLMIHSGDPVNDYVQF 172
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELP 238
AVRHVLLRQGVLGIKVKIML D K +G PLPD + I V P T+I P
Sbjct: 173 AVRHVLLRQGVLGIKVKIMLPHDPKEGKGVKKPLPDHIQI--------VQPKDETAITQP 224
Query: 239 VA 240
+
Sbjct: 225 YS 226
>gi|19113555|ref|NP_596763.1| 40S ribosomal protein S3 [Schizosaccharomyces pombe 972h-]
gi|6094179|sp|O60128.1|RS3_SCHPO RecName: Full=40S ribosomal protein S3
gi|3133108|emb|CAA19033.1| 40S ribosomal protein S3 (predicted) [Schizosaccharomyces pombe]
gi|110082655|dbj|BAE97279.1| ribosomal protein s3 [Schizosaccharomyces pombe]
Length = 249
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/231 (70%), Positives = 188/231 (81%), Gaps = 12/231 (5%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISKKRKFVADGVF+AELNE TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGE
Sbjct: 4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YG
Sbjct: 64 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLR++ME+GAKGCE V++SGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 124 VLRYVMEAGAKGCE--------VVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATR 175
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLG+KVKIML + K +Q + LPD+V + P +EE P T
Sbjct: 176 HVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKPYT 223
>gi|397567805|gb|EJK45790.1| hypothetical protein THAOC_35575 [Thalassiosira oceanica]
Length = 266
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 160/220 (72%), Positives = 182/220 (82%), Gaps = 10/220 (4%)
Query: 1 MAT--QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV 58
MAT ++S KRKFVADGVF+AELNE+LTRELAEDGY+GVEVR TP RTEIIIRAT+TQNV
Sbjct: 2 MATRAKMSTKRKFVADGVFYAELNELLTRELAEDGYAGVEVRTTPHRTEIIIRATKTQNV 61
Query: 59 LGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRA 118
LGEKG+RIRELTSVVQKRF F E +VELYAE+V NRGLCA AQAESL++KLL GLAVRRA
Sbjct: 62 LGEKGQRIRELTSVVQKRFDFAEGAVELYAERVQNRGLCAQAQAESLKFKLLAGLAVRRA 121
Query: 119 CYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
CYGV+RF+ME+ AKGCE VIVSGKLR QRAK+MKF DGYMI +G Y D+
Sbjct: 122 CYGVVRFVMEASAKGCE--------VIVSGKLRGQRAKAMKFGDGYMIKTGHAGQVYTDT 173
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
AVRHV +RQG++GIKV IML D KG+ GP PL D+VTI
Sbjct: 174 AVRHVAMRQGMIGIKVSIMLPHDPKGQIGPKIPLDDVVTI 213
>gi|237837605|ref|XP_002368100.1| 40S ribosomal protein S3, putative [Toxoplasma gondii ME49]
gi|211965764|gb|EEB00960.1| 40S ribosomal protein S3, putative [Toxoplasma gondii ME49]
gi|221509134|gb|EEE34703.1| 40S ribosomal protein S3, putative [Toxoplasma gondii VEG]
Length = 235
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 160/221 (72%), Positives = 183/221 (82%), Gaps = 8/221 (3%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
KKRKFV DGVF AELNE L+ L+EDGYSGVEVRVTP+RTEIIIRATRT+ VLG+KGRRI
Sbjct: 9 KKRKFVKDGVFQAELNEFLSCTLSEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRI 68
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
RELTSVVQKRF F +SVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGVLR I
Sbjct: 69 RELTSVVQKRFGFAPDSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGVLRHI 128
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLRAQRAKSMKFKDGY+IS+G+P ++D A+R V LR
Sbjct: 129 MESGAKGCE--------VVVSGKLRAQRAKSMKFKDGYLISTGEPSKMFVDQAIRSVQLR 180
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
QGVLG++VKIML D +GK+GP PLPD + + K E+ V
Sbjct: 181 QGVLGVRVKIMLPHDPEGKRGPANPLPDTIIVMDPKPEIPV 221
>gi|430813642|emb|CCJ29017.1| unnamed protein product [Pneumocystis jirovecii]
Length = 412
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 164/225 (72%), Positives = 178/225 (79%), Gaps = 14/225 (6%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+A IS FVADGVFFAELNE TREL+ +GYSG EVRVTP RTEIIIRAT TQ+VLG
Sbjct: 165 LANLISLFAMFVADGVFFAELNEFFTRELSAEGYSGTEVRVTPSRTEIIIRATHTQDVLG 224
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS++QKRFKFPE SVELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA Y
Sbjct: 225 EKGRRIRELTSLIQKRFKFPEGSVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 284
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V++SGKLRA RAKSMKF DG+MI SGQP ++IDSA
Sbjct: 285 GVLRFIMESGAKGCE--------VVISGKLRAARAKSMKFTDGFMIHSGQPSRDFIDSAT 336
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD-LVTIHPLKEE 224
RHVLLRQGVLG+KVKIML K PLPD +V I P EE
Sbjct: 337 RHVLLRQGVLGVKVKIMLSESMTRK-----PLPDSVVVIEPKPEE 376
>gi|221488638|gb|EEE26852.1| 40S ribosomal protein S3, putative [Toxoplasma gondii GT1]
Length = 255
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 161/224 (71%), Positives = 184/224 (82%), Gaps = 8/224 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q KKRKFV DGVF AELNE L+ L+EDGYSGVEVRVTP+RTEIIIRATRT+ VLG+KG
Sbjct: 26 QTCKKRKFVKDGVFQAELNEFLSCTLSEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKG 85
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSVVQKRF F +SVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGVL
Sbjct: 86 RRIRELTSVVQKRFGFAPDSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGVL 145
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
R IMESGAKGCE V+VSGKLRAQRAKSMKFKDGY+IS+G+P ++D A+R V
Sbjct: 146 RHIMESGAKGCE--------VVVSGKLRAQRAKSMKFKDGYLISTGEPSKMFVDQAIRSV 197
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
LRQGVLG++VKIML D +GK+GP PLPD + + K E+ V
Sbjct: 198 QLRQGVLGVRVKIMLPHDPEGKRGPANPLPDTIIVMDPKPEIPV 241
>gi|110456370|gb|ABG74703.1| putative ribosomal protein S3 [Diaphorina citri]
Length = 220
Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 159/219 (72%), Positives = 177/219 (80%), Gaps = 8/219 (3%)
Query: 22 NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPE 81
+E LTRELAEDGYSGVE+R TP RTEIII ATRTQNVLG+KGRRIRELTSVVQKRFKF +
Sbjct: 1 DEFLTRELAEDGYSGVEIRFTPARTEIIIMATRTQNVLGDKGRRIRELTSVVQKRFKFAD 60
Query: 82 NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVS 141
++ELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE
Sbjct: 61 GAIELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE------ 114
Query: 142 SKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWD 201
V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML WD
Sbjct: 115 --VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 172
Query: 202 QKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPVA 240
GK GP PLPD V + KEEV ++ ++ P+A
Sbjct: 173 STGKTGPKKPLPDNVNVLEPKEEVNPTIPSSQVLDKPLA 211
>gi|393905484|gb|EFO25530.2| 40S ribosomal protein S3 [Loa loa]
Length = 250
Score = 318 bits (816), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 175/220 (79%), Gaps = 8/220 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRK V DG+F AELN L +ELAEDGYSGVEVR TP R EIII ATRTQ+VLGE+G
Sbjct: 7 QMSKKRKAVQDGIFKAELNNFLMKELAEDGYSGVEVRRTPARAEIIILATRTQSVLGERG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSVVQKRF F + +VELYAEKV NRGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 67 RRIRELTSVVQKRFGFADGTVELYAEKVTNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMES A+GCE VIVSGKLR QRAKSMKF DG MI SGQPVN+YI AVRHV
Sbjct: 127 RFIMESNAQGCE--------VIVSGKLRGQRAKSMKFVDGLMIHSGQPVNDYIQQAVRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LRQGVLGIKVKIML D KG GP LPD + I E
Sbjct: 179 QLRQGVLGIKVKIMLPHDPKGNMGPRIALPDQIHIQEPNE 218
>gi|312071288|ref|XP_003138539.1| 40S ribosomal protein S3 [Loa loa]
Length = 249
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 175/220 (79%), Gaps = 8/220 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRK V DG+F AELN L +ELAEDGYSGVEVR TP R EIII ATRTQ+VLGE+G
Sbjct: 6 QMSKKRKAVQDGIFKAELNNFLMKELAEDGYSGVEVRRTPARAEIIILATRTQSVLGERG 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSVVQKRF F + +VELYAEKV NRGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RRIRELTSVVQKRFGFADGTVELYAEKVTNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMES A+GCE VIVSGKLR QRAKSMKF DG MI SGQPVN+YI AVRHV
Sbjct: 126 RFIMESNAQGCE--------VIVSGKLRGQRAKSMKFVDGLMIHSGQPVNDYIQQAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LRQGVLGIKVKIML D KG GP LPD + I E
Sbjct: 178 QLRQGVLGIKVKIMLPHDPKGNMGPRIALPDQIHIQEPNE 217
>gi|40643020|emb|CAD91437.1| ribosomal protein S3 [Crassostrea gigas]
Length = 187
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/194 (82%), Positives = 169/194 (87%), Gaps = 8/194 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA +SKK+KFVADGVF AELN LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 2 MANPVSKKKKFVADGVFKAELNNFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 61
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE +VELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACY
Sbjct: 62 EKGRRIRELTSVVQKRFNFPEGTVELYAEKVAQRGLCAIAQCESLRYKLIGGLAVRRACY 121
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P+N+Y+D+AV
Sbjct: 122 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAV 173
Query: 181 RHVLLRQGVLGIKV 194
RHVLLRQGVLGIKV
Sbjct: 174 RHVLLRQGVLGIKV 187
>gi|326436207|gb|EGD81777.1| 40S ribosomal protein S3 [Salpingoeca sp. ATCC 50818]
Length = 234
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/236 (69%), Positives = 187/236 (79%), Gaps = 10/236 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKR+FVADGVF +ELNE L R L E GY+GVEVR TP RTEIII ATRTQ VLGEKG
Sbjct: 5 QMSKKRQFVADGVFKSELNEFLQRSLGEQGYAGVEVRKTPNRTEIIILATRTQEVLGEKG 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT +V+KRF F +N VEL+AEKV NRGLCA+AQ ESLRYKLLGGLAVRRACYGVL
Sbjct: 65 RRIRELTGLVKKRFGFKDN-VELFAEKVANRGLCAMAQCESLRYKLLGGLAVRRACYGVL 123
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
R +MESGAKGCE VI+SGKLRAQRAKSMKF DG+MIS+G P +YID+AVRHV
Sbjct: 124 RLVMESGAKGCE--------VIISGKLRAQRAKSMKFNDGFMISAGHPTRDYIDTAVRHV 175
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPATATSIELP 238
LLRQGVLGIKVKIM +D G+ GP+T LPD + I P +E+V P E+P
Sbjct: 176 LLRQGVLGIKVKIMRPYDPTGRNGPSTVLPDTLEIREPKEEDVPEKPYVQRLDEVP 231
>gi|392572589|gb|EIW65734.1| hypothetical protein TREMEDRAFT_41205 [Tremella mesenterica DSM
1558]
Length = 249
Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 159/217 (73%), Positives = 176/217 (81%), Gaps = 8/217 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ QISKKRKF+ADGVF AEL E T ELA++GYSG EVRVT RTEIIIRAT TQ VLG
Sbjct: 4 SAQISKKRKFIADGVFQAELGEFFTHELADEGYSGCEVRVTHARTEIIIRATHTQEVLGA 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
GRRIREL S+V KRFKFPENS+ELYAE+V RGL A+AQAESLRYKLLGGLA+RRACYG
Sbjct: 64 NGRRIRELRSLVMKRFKFPENSLELYAERVQYRGLSAVAQAESLRYKLLGGLAMRRACYG 123
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MESGAKGCE V+VSGKLRA RAKSMKF DG MI SGQP +Y+D AVR
Sbjct: 124 VLRFVMESGAKGCE--------VVVSGKLRAARAKSMKFVDGLMIHSGQPAKDYVDYAVR 175
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
HVLLRQGVLGIKVKIM +D +G+ GP LPD VT+
Sbjct: 176 HVLLRQGVLGIKVKIMRPFDPEGRMGPAKNLPDAVTM 212
>gi|170577011|ref|XP_001893846.1| 40S ribosomal protein S3 [Brugia malayi]
gi|158599891|gb|EDP37316.1| 40S ribosomal protein S3, putative [Brugia malayi]
Length = 250
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 161/216 (74%), Positives = 174/216 (80%), Gaps = 8/216 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
++SKKRK V DG+F AELN L +ELAEDGYSGVEVR TP R EIII ATRTQ+VLGE+G
Sbjct: 7 EMSKKRKAVQDGIFKAELNNFLMKELAEDGYSGVEVRRTPARAEIIILATRTQSVLGERG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSVVQKRF F + +VELYAEKV NRGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 67 RRIRELTSVVQKRFGFADGTVELYAEKVTNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMES A+GCE VIVSGKLR QRAKSMKF DG MI SGQPVN+YI AVRHV
Sbjct: 127 RFIMESNAQGCE--------VIVSGKLRGQRAKSMKFVDGLMIHSGQPVNDYIQQAVRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
LRQGVLGIKVKIML D KG GP LPD + I
Sbjct: 179 QLRQGVLGIKVKIMLPHDPKGNMGPRIALPDQIHIQ 214
>gi|33772509|gb|AAQ54656.1| 40S ribosomal protein S3 [Oikopleura dioica]
gi|313212505|emb|CBY36474.1| unnamed protein product [Oikopleura dioica]
gi|313217134|emb|CBY38302.1| unnamed protein product [Oikopleura dioica]
gi|313233568|emb|CBY09740.1| unnamed protein product [Oikopleura dioica]
Length = 239
Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/224 (70%), Positives = 182/224 (81%), Gaps = 8/224 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ ISKKRK VA+GVF AEL+ L +ELAEDGYSGVEVR+TP RTEIII ATRTQNVLG+
Sbjct: 5 SANISKKRKHVAEGVFRAELDGYLRKELAEDGYSGVEVRITPKRTEIIILATRTQNVLGD 64
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
K +RIRELT++VQKRF+ + +VEL+AEKV NRGLCAIAQ ESLRYKL GGLAVRRA YG
Sbjct: 65 KAKRIRELTALVQKRFQIKDGAVELFAEKVANRGLCAIAQCESLRYKLEGGLAVRRAAYG 124
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V++SGKLR QRAK+MKF DG MI +G PV EY+D+AVR
Sbjct: 125 VLRFIMESGAKGCE--------VVISGKLRGQRAKAMKFTDGLMIHTGHPVTEYVDTAVR 176
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
HV+LRQGV+G+KVK+ML D GK GP TP PD+V I KEEV
Sbjct: 177 HVMLRQGVIGLKVKVMLPHDPAGKVGPKTPYPDIVEIREPKEEV 220
>gi|58258267|ref|XP_566546.1| ribosomal protein S3 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134106179|ref|XP_778100.1| 40S ribosomal protein S3 [Cryptococcus neoformans var. neoformans
B-3501A]
gi|321251025|ref|XP_003191933.1| ribosomal protein S3 [Cryptococcus gattii WM276]
gi|50260803|gb|EAL23453.1| hypothetical protein CNBA1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222683|gb|AAW40727.1| ribosomal protein S3, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317458401|gb|ADV20146.1| Ribosomal protein S3, putative [Cryptococcus gattii WM276]
gi|405117477|gb|AFR92252.1| ribosomal protein S3 [Cryptococcus neoformans var. grubii H99]
Length = 252
Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 159/220 (72%), Positives = 179/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF AELN+ TRELAE+GY+G EVRVT RTEIIIRAT TQ VLG+KGR
Sbjct: 7 ISKRRKFVADGVFQAELNDFFTRELAEEGYAGCEVRVTHARTEIIIRATHTQEVLGDKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIREL ++++KRFKFPEN++ELYAEKV RGL A AQAESLRYKLLGGLA+RRACYGVLR
Sbjct: 67 RIRELKALIEKRFKFPENALELYAEKVQYRGLSATAQAESLRYKLLGGLAMRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+MESGAKGCE V+VSGKLRA RAKSMKF +G+M+ SGQP ++ID AVRHVL
Sbjct: 127 FVMESGAKGCE--------VVVSGKLRAARAKSMKFTEGFMVHSGQPARDFIDYAVRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM D G+QGP LPD V I K E
Sbjct: 179 LRQGVLGIKVKIMKPSDPAGRQGPAKNLPDDVQITEPKAE 218
>gi|388579652|gb|EIM19973.1| 40S ribosomal protein S3 [Wallemia sebi CBS 633.66]
Length = 244
Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 161/221 (72%), Positives = 180/221 (81%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SK RK V DGVF AEL E TREL+E+G+SG EVRVT RTEIIIRAT TQ VLGEKG
Sbjct: 7 QLSKSRKIVQDGVFQAELIEFFTRELSEEGFSGCEVRVTHARTEIIIRATHTQEVLGEKG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++VQKRFKFPENS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRACYGV+
Sbjct: 67 RRIRELTALVQKRFKFPENSLELYAEKVQNRGLSAVAQCESLRYKLLGGLAVRRACYGVV 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAK+MKF DG+MI SGQPV +++D AVRHV
Sbjct: 127 RFIMESGAKGCE--------VVVSGKLRAARAKAMKFTDGFMIHSGQPVRDFVDFAVRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LL+QGVLG+KVKIM D +G+ G PLPD V I KEE
Sbjct: 179 LLKQGVLGLKVKIMRPHDPEGRAGFPKPLPDSVVIVEPKEE 219
>gi|149068844|gb|EDM18396.1| rCG40478, isoform CRA_f [Rattus norvegicus]
Length = 181
Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 160/188 (85%), Positives = 165/188 (87%), Gaps = 8/188 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQG 188
RHVLLRQG
Sbjct: 173 RHVLLRQG 180
>gi|213410238|ref|XP_002175889.1| 40S ribosomal protein S3 [Schizosaccharomyces japonicus yFS275]
gi|212003936|gb|EEB09596.1| 40S ribosomal protein S3 [Schizosaccharomyces japonicus yFS275]
Length = 251
Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 167/240 (69%), Positives = 190/240 (79%), Gaps = 16/240 (6%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISKKRKFVADGVF+AELNE TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGE
Sbjct: 3 ALTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YG
Sbjct: 63 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLR++ME+GAKGCE V++SGKLRA RAKSMKF DG+MI SGQP ++ID A R
Sbjct: 123 VLRYVMEAGAKGCE--------VVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDCATR 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATA--TSIELPV 239
HVLLRQGVLG+KVKIML + K +Q + LPD V + KEE AP T T + PV
Sbjct: 175 HVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDAVVVLDPKEE---APITEPYTVVNQPV 228
>gi|28189605|dbj|BAC56417.1| similar to ribosomal protein S3 [Bos taurus]
Length = 206
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 161/189 (85%), Positives = 166/189 (87%), Gaps = 8/189 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGV 189
RHVLLRQGV
Sbjct: 173 RHVLLRQGV 181
>gi|399216964|emb|CCF73651.1| unnamed protein product [Babesia microti strain RI]
Length = 218
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/223 (70%), Positives = 183/223 (82%), Gaps = 8/223 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKK KF+ DG+F AELNE L+R LAEDGYSGVEVR TPV+TE+IIRATRT+ VLGEK
Sbjct: 4 AQISKKCKFINDGIFHAELNEFLSRSLAEDGYSGVEVRATPVKTEVIIRATRTREVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTS+VQKRF F +SVELYAE++ +RGLCA+AQAESLRYKLL GLAVRRA YGV
Sbjct: 64 GRRIRELTSLVQKRFGFAPDSVELYAERIEHRGLCAMAQAESLRYKLLKGLAVRRAAYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR IMESGA GCE +I+SGKLRAQRAKSMKFKDGY+IS+G+P +YI+SA R
Sbjct: 124 LRHIMESGANGCE--------IIISGKLRAQRAKSMKFKDGYLISTGEPSKQYINSATRS 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
V LRQGVLG+KVKIML D +GK+GP +PD +T+ K E+
Sbjct: 176 VQLRQGVLGVKVKIMLPHDPEGKRGPKAIIPDSITVLEPKPEL 218
>gi|219114717|ref|XP_002178154.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409889|gb|EEC49819.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 253
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 158/220 (71%), Positives = 179/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S KRKFVADGVF+AELNE+LT ELAE+GY+GVEVR TP RTE+IIRATRTQNVLGE R
Sbjct: 1 MSVKRKFVADGVFYAELNELLTAELAEEGYAGVEVRTTPHRTELIIRATRTQNVLGENNR 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTSVVQKRF F + +VELYAE+V NRGLCA AQAESL++KLLGGLAVRRACYGV+R
Sbjct: 61 RIRELTSVVQKRFNFADGAVELYAERVQNRGLCAQAQAESLKFKLLGGLAVRRACYGVVR 120
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+ME+ AKGCE V+V+GKLR QRAK MKF DGYMI +G Y DSAVRHVL
Sbjct: 121 FVMEAQAKGCE--------VVVTGKLRGQRAKGMKFGDGYMIKTGHAGQVYTDSAVRHVL 172
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
+RQGV+GIKV IML D KG+ GP PL D+VTI KEE
Sbjct: 173 MRQGVIGIKVSIMLPQDPKGQMGPKIPLDDVVTILEPKEE 212
>gi|17554770|ref|NP_498349.1| Protein RPS-3 [Caenorhabditis elegans]
gi|1350989|sp|P48152.1|RS3_CAEEL RecName: Full=40S ribosomal protein S3
gi|351050702|emb|CCD65297.1| Protein RPS-3 [Caenorhabditis elegans]
Length = 247
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 178/221 (80%), Gaps = 8/221 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LRQGV+GIKVKIML +D +G+ GP LPD V I +EEV
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV 219
>gi|346466617|gb|AEO33153.1| hypothetical protein [Amblyomma maculatum]
Length = 254
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/206 (78%), Positives = 173/206 (83%), Gaps = 8/206 (3%)
Query: 19 AELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
AELNE L RELAEDGYSGVEVRVTP TEIII ATRTQ+VLGEKGRRIRELTSVVQKRF
Sbjct: 31 AELNEFLRRELAEDGYSGVEVRVTPQNTEIIILATRTQSVLGEKGRRIRELTSVVQKRFN 90
Query: 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
FPE +VELYAEKV +RGLCAIAQ ESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE
Sbjct: 91 FPEGTVELYAEKVASRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--- 147
Query: 139 LVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
V+VSGKLR QRAKSMKF DG MI SG+P N+Y+++AVRHVLLRQGVLGIKVKIML
Sbjct: 148 -----VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVETAVRHVLLRQGVLGIKVKIML 202
Query: 199 EWDQKGKQGPTTPLPDLVTIHPLKEE 224
D GK GP PLPD V+I K+E
Sbjct: 203 PCDPNGKLGPKKPLPDHVSIMEPKKE 228
>gi|429329723|gb|AFZ81482.1| 40S ribosomal protein S3, putative [Babesia equi]
Length = 218
Score = 314 bits (804), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/213 (74%), Positives = 176/213 (82%), Gaps = 8/213 (3%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SK++KF+ DGVF AELNE L R LAEDGYSGVE+R+TPVRTEIIIRATRT+ VLGEK RR
Sbjct: 8 SKQKKFINDGVFNAELNEFLARTLAEDGYSGVELRITPVRTEIIIRATRTREVLGEKARR 67
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELTS+VQKRF F +SVELYAE+V NRGLCA+AQAESLRYKLL GLAVRRA YGVLR
Sbjct: 68 IRELTSLVQKRFGFSSDSVELYAERVENRGLCAMAQAESLRYKLLKGLAVRRAAYGVLRH 127
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+GQP Y+ +AVR V L
Sbjct: 128 IMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYIISTGQPAQAYVSTAVRSVQL 179
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RQGVLGIKVKIM D G+ GPT LPD +T+
Sbjct: 180 RQGVLGIKVKIMHPHDPDGRIGPTMILPDNITV 212
>gi|268569106|ref|XP_002648176.1| C. briggsae CBR-RPS-3 protein [Caenorhabditis briggsae]
Length = 247
Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 177/221 (80%), Gaps = 8/221 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LRQGV+GIKVKIML +D +G GP LPD V I +EEV
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGMNGPRNALPDHVQIMEPQEEV 219
>gi|149068849|gb|EDM18401.1| rCG40478, isoform CRA_k [Rattus norvegicus]
Length = 201
Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 159/187 (85%), Positives = 164/187 (87%), Gaps = 8/187 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQ 187
RHVLLRQ
Sbjct: 173 RHVLLRQ 179
>gi|225682378|gb|EEH20662.1| 40S ribosomal protein S3 [Paracoccidioides brasiliensis Pb03]
Length = 261
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 163/228 (71%), Positives = 179/228 (78%), Gaps = 18/228 (7%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+II LGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDII---------LGEQGR 58
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 59 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQPV ++IDSA RHVL
Sbjct: 119 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPVRDFIDSATRHVL 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D +GK GP LPD VT I P +EE + P +
Sbjct: 171 LRQGVLGIKVKIMRGSDPEGKSGPQKSLPDSVTIIDPKEEEPVLHPIS 218
>gi|341895059|gb|EGT50994.1| CBN-RPS-3 protein [Caenorhabditis brenneri]
Length = 246
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 158/221 (71%), Positives = 178/221 (80%), Gaps = 8/221 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LRQGV+GIKVKIML +D +G+ GP LPD V I ++EV
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGQNGPKIALPDHVQILEPQDEV 219
>gi|209489412|gb|ACI49174.1| hypothetical protein Csp3_JD02.002 [Caenorhabditis angaria]
Length = 247
Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 161/242 (66%), Positives = 186/242 (76%), Gaps = 14/242 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V +G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 LTKKKKAVQNGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVEL+AEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELFAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATA-----TSIELP 238
LRQGV+GIKVKIML +D +G+ GP LPD V I P+ E + P + I++P
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIEDPVDEVLPTEPHSQHKEEKKDIQIP 238
Query: 239 VA 240
A
Sbjct: 239 PA 240
>gi|452988654|gb|EME88409.1| hypothetical protein MYCFIDRAFT_70441 [Pseudocercospora fijiensis
CIRAD86]
Length = 273
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/232 (69%), Positives = 182/232 (78%), Gaps = 13/232 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 15 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 74
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++ RFKFP +SV LYA KV +RGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 75 RIRELTSLITHRFKFPPDSVSLYAAKVQSRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 134
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVL
Sbjct: 135 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVL 186
Query: 185 LRQGVLGIKVKIMLEW----DQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D G++ LPD VT I P +E+ +AP++
Sbjct: 187 LRQGVLGIKVKIMRASSSPNDPSGEKAGGKGLPDSVTIIEPKEEQPILAPSS 238
>gi|263173249|gb|ACY69890.1| S3e ribosomal protein [Cimex lectularius]
Length = 221
Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 172/214 (80%), Gaps = 8/214 (3%)
Query: 15 GVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74
GV AELNE LTRELAE+GYSG+E+R+TP RTEIII AT TQNVLGEKG+RIR LTSV+Q
Sbjct: 1 GVLKAELNEFLTRELAEEGYSGIEMRMTPARTEIIIMATSTQNVLGEKGKRIRALTSVIQ 60
Query: 75 KRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGC 134
KRF+F E ++LY EKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIME+GAKGC
Sbjct: 61 KRFQFAEGKLDLYTEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMENGAKGC 120
Query: 135 EFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKV 194
E ++VSGKLR QRAKSMKF DG MI SG P NEY+DSA RHVLLRQGVLG+KV
Sbjct: 121 E--------IVVSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDSATRHVLLRQGVLGVKV 172
Query: 195 KIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
KIML WD GK G PLPD V + KEE ++
Sbjct: 173 KIMLPWDTLGKIGLKKPLPDNVCVCDPKEETVIS 206
>gi|78190549|gb|ABB29596.1| ribosomal protein 3 small subunit [Platynereis dumerilii]
Length = 188
Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 157/196 (80%), Positives = 165/196 (84%), Gaps = 8/196 (4%)
Query: 29 LAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88
LAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELTSVVQKRF F E +VELYA
Sbjct: 1 LAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTSVVQKRFNFQEGTVELYA 60
Query: 89 EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSG 148
EKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+VSG
Sbjct: 61 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VVVSG 112
Query: 149 KLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 208
KLR QRAKSMKF DG MI SG P N+Y+D+AVRHVLLRQGVLGIKVKIML WD GK GP
Sbjct: 113 KLRGQRAKSMKFVDGLMIHSGDPTNDYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGP 172
Query: 209 TTPLPDLVTIHPLKEE 224
PLPD V+I +EE
Sbjct: 173 KRPLPDHVSIVEPQEE 188
>gi|453089728|gb|EMF17768.1| ribosomal protein S3 [Mycosphaerella populorum SO2202]
Length = 276
Score = 310 bits (793), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 160/233 (68%), Positives = 182/233 (78%), Gaps = 13/233 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+G
Sbjct: 14 NISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQG 73
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS++ RF+FP +SV LYA KV +RGL A+AQ ESLRYKLL GLAVRRACYGVL
Sbjct: 74 RRIRELTSLITHRFRFPPDSVSLYAAKVQSRGLSAVAQCESLRYKLLNGLAVRRACYGVL 133
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHV
Sbjct: 134 RFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHV 185
Query: 184 LLRQGVLGIKVKIMLEW----DQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LLRQGVLGIKVKIM D G++ LPD VT I P +E+ +AP++
Sbjct: 186 LLRQGVLGIKVKIMRASSSPNDPAGEKAGGKGLPDSVTIIEPKEEQPILAPSS 238
>gi|339240791|ref|XP_003376321.1| 40S ribosomal protein S3-A [Trichinella spiralis]
gi|316974969|gb|EFV58434.1| 40S ribosomal protein S3-A [Trichinella spiralis]
Length = 330
Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 159/220 (72%), Positives = 173/220 (78%), Gaps = 10/220 (4%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
S K+KF+ADGVF AELN RELAEDGYSGVEVR TP +TEIII ATRTQNVLGEKGRR
Sbjct: 100 SIKKKFIADGVFKAELNNFFMRELAEDGYSGVEVRKTPRKTEIIIMATRTQNVLGEKGRR 159
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELTS+VQKRF PE S LYAEKV RGLCAIAQ ESLR+KL+GGL VRRACYG+LR+
Sbjct: 160 IRELTSLVQKRFNLPEES--LYAEKVAQRGLCAIAQCESLRFKLIGGLPVRRACYGILRY 217
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMES AKGCE VIVSGKLR QRAKSMKF DG MI SG P NEY++ VRHV+L
Sbjct: 218 IMESQAKGCE--------VIVSGKLRGQRAKSMKFVDGLMIHSGDPTNEYVEKGVRHVVL 269
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RQGV+GIKVKIML D KG GP PLPD V + KEE+
Sbjct: 270 RQGVIGIKVKIMLPHDPKGVYGPKKPLPDSVVVFEPKEEI 309
>gi|398398591|ref|XP_003852753.1| hypothetical protein MYCGRDRAFT_42422 [Zymoseptoria tritici IPO323]
gi|339472634|gb|EGP87729.1| hypothetical protein MYCGRDRAFT_42422 [Zymoseptoria tritici IPO323]
Length = 265
Score = 309 bits (792), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 160/233 (68%), Positives = 181/233 (77%), Gaps = 13/233 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+G
Sbjct: 5 NISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQG 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS++ RFKFP +SV LYA KV +RGL A+AQ ESLRYKLL GLAVRRACYGVL
Sbjct: 65 RRIRELTSLITHRFKFPADSVSLYAAKVQSRGLSAVAQCESLRYKLLNGLAVRRACYGVL 124
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHV
Sbjct: 125 RFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHV 176
Query: 184 LLRQGVLGIKVKIM----LEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LLRQGVLGIKVKIM D G++ LPD VT I P +E+ +AP++
Sbjct: 177 LLRQGVLGIKVKIMRASSTPGDPAGEKSGGKGLPDSVTIIEPKEEQPILAPSS 229
>gi|428179210|gb|EKX48082.1| small subunit ribosomal protein S3e, cytoplasmic [Guillardia theta
CCMP2712]
Length = 249
Score = 309 bits (791), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/220 (68%), Positives = 180/220 (81%), Gaps = 8/220 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGV +AELNE+L ELAEDGYSGVE+R TP+RTEIIIRATRT+ VLGEKG+
Sbjct: 6 ISKKRKFVQDGVLYAELNEMLMHELAEDGYSGVEIRRTPMRTEIIIRATRTREVLGEKGQ 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS VQKRF F E +VE++AE+V+NRGL A+AQAESL++KLLGGL VRRACYGV+R
Sbjct: 66 RIRELTSAVQKRFGFAEGTVEMFAERVHNRGLSAMAQAESLKFKLLGGLQVRRACYGVIR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+MESGA G E VIVSGK R QRAKSMKFK G++I++G+P +ID A RHV+
Sbjct: 126 FVMESGALGVE--------VIVSGKARVQRAKSMKFKSGFLITTGRPAQVFIDKATRHVM 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
++QGVLGI++KIML D +GK GP TP PD VTI KE+
Sbjct: 178 MKQGVLGIRLKIMLPHDPEGKNGPKTPFPDTVTILDPKED 217
>gi|268619106|gb|ACZ13329.1| 40S ribosomal protein S3 [Bursaphelenchus xylophilus]
Length = 272
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 160/226 (70%), Positives = 175/226 (77%), Gaps = 9/226 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
I+KK+K V DGVF AELN L +ELAEDGY+GVEVR P RTE+II ATRTQNVLGE+GR
Sbjct: 27 ITKKKKAVQDGVFKAELNNFLMKELAEDGYAGVEVRRAPTRTEVIITATRTQNVLGERGR 86
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+VVQKRF F VELYAEKV NRGLCA+AQ ESLR+KL GGLAVRRACYGVLR
Sbjct: 87 RIRELTAVVQKRFGFNVGQVELYAEKVANRGLCAVAQCESLRFKLCGGLAVRRACYGVLR 146
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMES AKGCE +IVSGKLR QRAK+MKF DG MI SG PVNEY+ AVRHV
Sbjct: 147 FIMESQAKGCE--------IIVSGKLRGQRAKAMKFVDGIMIHSGHPVNEYVQQAVRHVQ 198
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
LRQGVLGIKVKIML D +GK GP PLPD + I P E+ P
Sbjct: 199 LRQGVLGIKVKIMLPHDPEGKIGPRNPLPDHIQILEPRPEDNPTVP 244
>gi|164658119|ref|XP_001730185.1| hypothetical protein MGL_2567 [Malassezia globosa CBS 7966]
gi|159104080|gb|EDP42971.1| hypothetical protein MGL_2567 [Malassezia globosa CBS 7966]
Length = 264
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/236 (65%), Positives = 183/236 (77%), Gaps = 8/236 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFVADGVF AELNE TRELA +GYSG VRV VRTEIIIRAT TQ VLG+KGR
Sbjct: 6 ISKKRKFVADGVFTAELNEFFTRELAAEGYSGCLVRVNHVRTEIIIRATHTQEVLGDKGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
R+RELT++V++RF+FPE S+ELYAEKV NRGL A+AQ ESLR KLLGGL VRRA YGVLR
Sbjct: 66 RLRELTTLVRQRFRFPEGSLELYAEKVANRGLHAVAQCESLRNKLLGGLPVRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V++SGK+R RAKSMKF DG+MI +GQP +++D A+RHVL
Sbjct: 126 YVMESGAKGCE--------VVISGKVRGARAKSMKFNDGFMIHTGQPAKDFVDVAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPVA 240
++QGVLG+KVKIM WD +G+ G PLPD VTI KE+ + + S PVA
Sbjct: 178 MKQGVLGLKVKIMHGWDPEGRSGRPFPLPDAVTILEPKEDEPITAPMSESRNQPVA 233
>gi|71017745|ref|XP_759103.1| hypothetical protein UM02956.1 [Ustilago maydis 521]
gi|46098895|gb|EAK84128.1| hypothetical protein UM02956.1 [Ustilago maydis 521]
Length = 239
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/237 (67%), Positives = 181/237 (76%), Gaps = 19/237 (8%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
+ ISKKRKFVADGVF AELNE TREL+E+GYSG EVRVT RTEIIIRAT TQ VLG+
Sbjct: 3 SANISKKRKFVADGVFAAELNEFFTRELSEEGYSGCEVRVTHARTEIIIRATHTQEVLGD 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKFP+NS+ELYAEKV NRGL A+AQ ESLRYKLLGGLAVRRA YG
Sbjct: 63 KGRRIRELTALVQKRFKFPDNSLELYAEKVQNRGLHAVAQCESLRYKLLGGLAVRRAAYG 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF+MESGAKGCE V++SGKLRA RAKSMKF D +++D AVR
Sbjct: 123 VLRFVMESGAKGCE--------VVISGKLRAARAKSMKFTD-----------DFVDEAVR 163
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELP 238
HVL++QGVLGIKVKIM WD +G+ G PLPD VTI KEE ++ + S P
Sbjct: 164 HVLMKQGVLGIKVKIMQGWDPEGRAGKPFPLPDAVTILEPKEEAPISAPVSESRNAP 220
>gi|452848046|gb|EME49978.1| hypothetical protein DOTSEDRAFT_122074 [Dothistroma septosporum
NZE10]
Length = 266
Score = 307 bits (787), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 181/233 (77%), Gaps = 13/233 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+G
Sbjct: 5 NISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQG 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTS++ RF+FP +SV LYA KV +RGL A+AQ ESLRYKLL GLAVRRACYGVL
Sbjct: 65 RRIRELTSLITHRFRFPPDSVSLYAAKVQSRGLSAVAQCESLRYKLLNGLAVRRACYGVL 124
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHV
Sbjct: 125 RFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHV 176
Query: 184 LLRQGVLGIKVKIM----LEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LLRQGVLGIKVKIM D G++ LPD VT I P +E+ +AP++
Sbjct: 177 LLRQGVLGIKVKIMRASSSPGDPSGEKAGGKGLPDSVTIIEPKEEQPILAPSS 229
>gi|308498826|ref|XP_003111599.1| CRE-RPS-3 protein [Caenorhabditis remanei]
gi|308239508|gb|EFO83460.1| CRE-RPS-3 protein [Caenorhabditis remanei]
Length = 255
Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/229 (69%), Positives = 178/229 (77%), Gaps = 16/229 (6%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVE--------LYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 116
RI+ELTSVVQKRF F E SVE LYAEKV+NRGLCA+AQ ESLRYKL+GGLAVR
Sbjct: 67 RIKELTSVVQKRFAFEEGSVEVKFSFRNLLYAEKVSNRGLCAVAQCESLRYKLVGGLAVR 126
Query: 117 RACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 176
RACYGVLRFIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI
Sbjct: 127 RACYGVLRFIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYI 178
Query: 177 DSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
AVRHV LRQGV+GIKVKIML +D +G+ GP LPD V I +EEV
Sbjct: 179 QQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRIALPDHVQIVEPQEEV 227
>gi|449304480|gb|EMD00487.1| hypothetical protein BAUCODRAFT_99745 [Baudoinia compniacensis UAMH
10762]
Length = 282
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 178/230 (77%), Gaps = 13/230 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 16 VSKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 75
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++ RF+FP SV LYA KV +RGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 76 RIRELTSLITHRFRFPPESVSLYAAKVQSRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 135
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 136 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAVDFIDHATRHVL 187
Query: 185 LRQGVLGIKVKIM----LEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAP 229
LRQGVLGIKVKIM D G++ LPD VT I P +E+ +AP
Sbjct: 188 LRQGVLGIKVKIMRASSSPSDPAGEKAGGKGLPDSVTIIEPKEEQPIMAP 237
>gi|398364505|ref|NP_014221.3| ribosomal 40S subunit protein S3 [Saccharomyces cerevisiae S288c]
gi|1173255|sp|P05750.5|RS3_YEAST RecName: Full=40S ribosomal protein S3; AltName: Full=RP13;
AltName: Full=YS3
gi|313103665|pdb|3IZB|B Chain B, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
gi|315113450|pdb|3O2Z|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
gi|315113478|pdb|3O30|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
gi|364506099|pdb|3U5C|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
gi|364506137|pdb|3U5G|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
gi|457164|dbj|BAA04973.1| ribosomal protein YS3 [Saccharomyces cerevisiae]
gi|1302158|emb|CAA96070.1| RPS3 [Saccharomyces cerevisiae]
gi|1463121|gb|AAC49380.1| ribosomal protein S3 [Saccharomyces cerevisiae]
gi|151944361|gb|EDN62639.1| ribosomal protein S3 [Saccharomyces cerevisiae YJM789]
gi|190409159|gb|EDV12424.1| ribosomal protein S3 [Saccharomyces cerevisiae RM11-1a]
gi|207341817|gb|EDZ69765.1| YNL178Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270755|gb|EEU05916.1| Rps3p [Saccharomyces cerevisiae JAY291]
gi|259149181|emb|CAY82423.1| Rps3p [Saccharomyces cerevisiae EC1118]
gi|285814479|tpg|DAA10373.1| TPA: ribosomal 40S subunit protein S3 [Saccharomyces cerevisiae
S288c]
gi|323331906|gb|EGA73318.1| Rps3p [Saccharomyces cerevisiae AWRI796]
gi|323335912|gb|EGA77190.1| Rps3p [Saccharomyces cerevisiae Vin13]
gi|323346843|gb|EGA81122.1| Rps3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352903|gb|EGA85205.1| Rps3p [Saccharomyces cerevisiae VL3]
gi|349580763|dbj|GAA25922.1| K7_Rps3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763526|gb|EHN05054.1| Rps3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296815|gb|EIW07916.1| Rps3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 240
Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 186/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221
>gi|406867161|gb|EKD20200.1| ribosomal protein S3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 319
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/228 (69%), Positives = 172/228 (75%), Gaps = 22/228 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVFFAELNE RELAE+GY IIRAT TQ VLGE+GR
Sbjct: 82 ISKRRKFVADGVFFAELNEFFQRELAEEGY-------------FIIRATHTQEVLGEQGR 128
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 129 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 188
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++ID A RHVL
Sbjct: 189 FIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDHATRHVL 240
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT 231
LRQGVLGIKVKIM D +GK GP LPD VT I P +E+ V P +
Sbjct: 241 LRQGVLGIKVKIMRGSDPEGKSGPQKTLPDSVTVIEPKEEQSVVQPMS 288
>gi|401623905|gb|EJS41984.1| rps3p [Saccharomyces arboricola H-6]
Length = 240
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 186/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VTI P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIVEPKEEEPILAPS 221
>gi|401839576|gb|EJT42741.1| RPS3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 186/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEQILAPS 221
>gi|366995337|ref|XP_003677432.1| hypothetical protein NCAS_0G01920 [Naumovozyma castellii CBS 4309]
gi|342303301|emb|CCC71079.1| hypothetical protein NCAS_0G01920 [Naumovozyma castellii CBS 4309]
Length = 244
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 155/231 (67%), Positives = 184/231 (79%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL AIAQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAIAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFSDGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K GP LPD VTI P EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PATAKTGPRA-LPDAVTIVEPKDEEPVLAPS 221
>gi|410075477|ref|XP_003955321.1| hypothetical protein KAFR_0A07520 [Kazachstania africana CBS 2517]
gi|372461903|emb|CCF56186.1| hypothetical protein KAFR_0A07520 [Kazachstania africana CBS 2517]
Length = 241
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/230 (67%), Positives = 182/230 (79%), Gaps = 11/230 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL AIAQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAIAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF+MESGAKGCE V+VSGKLRA RAKSMKF DG++I SGQPVN++ID A
Sbjct: 121 GVVRFVMESGAKGCE--------VVVSGKLRAARAKSMKFADGFLIHSGQPVNDFIDIAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
RHVL+RQGVLGIKVKIM + + K GPT LPD V+I P EE P
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PSRNKVGPTA-LPDAVSIVEPKDEERVTQP 220
>gi|156084414|ref|XP_001609690.1| 40S ribosomal protein S3 protein [Babesia bovis T2Bo]
gi|154796942|gb|EDO06122.1| 40S ribosomal protein S3 protein, putative [Babesia bovis]
Length = 223
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 152/216 (70%), Positives = 177/216 (81%), Gaps = 8/216 (3%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T+ S RKF+ DGVF AELNE L+R LAEDGYSGVE+R+TPVRTEIIIRATR + V+GEK
Sbjct: 5 TRKSMCRKFIGDGVFNAELNEFLSRVLAEDGYSGVELRITPVRTEIIIRATRAREVVGEK 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RRIRELTS++QKRF F ++VELYAE+V ++GLCA+AQAESLRYKLL GLAVRRA YGV
Sbjct: 65 ARRIRELTSLIQKRFGFSPDTVELYAERVEHKGLCAMAQAESLRYKLLKGLAVRRAAYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+GQP ++ SA R
Sbjct: 125 LRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYLISTGQPAKTFVTSATRS 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
V LRQGVLGIKVKIM D +G+ GP+T +PD +T+
Sbjct: 177 VQLRQGVLGIKVKIMHPHDPEGRLGPSTVMPDTITV 212
>gi|363754787|ref|XP_003647609.1| hypothetical protein Ecym_6420 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891246|gb|AET40792.1| hypothetical protein Ecym_6420 [Eremothecium cymbalariae
DBVPG#7215]
Length = 328
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/231 (67%), Positives = 183/231 (79%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP TE+IIRATRTQ+VLG
Sbjct: 85 MVTVISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTTTEVIIRATRTQDVLG 144
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ L+AE+V RGL A+AQAESL++KLL GLA+RRA Y
Sbjct: 145 ENGRRINELTLLVQKRFKYQPGTIVLFAERVQERGLSAVAQAESLKFKLLNGLAIRRAAY 204
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V++SGKLRA RAKSMKF DG++I SGQPVN++ID+A
Sbjct: 205 GVVRYVMESGAKGCE--------VVISGKLRAARAKSMKFSDGFLIHSGQPVNDFIDTAT 256
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLV-TIHPLKEEVYVAPA 230
RHVLLRQGVLGIKVKIM + K + GPT LPD V I P E+V P+
Sbjct: 257 RHVLLRQGVLGIKVKIMKD-PSKARTGPTA-LPDAVEIIEPKDEDVVKEPS 305
>gi|215260017|gb|ACJ64493.1| 40S ribosomal protein S3 [Culex tarsalis]
Length = 221
Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 154/201 (76%), Positives = 163/201 (81%), Gaps = 9/201 (4%)
Query: 30 AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89
AEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF F +VELYAE
Sbjct: 1 AEDGYSGVEVRVTPTRTEIIIMATRTQNVLGEKGRRIRELTAVVQKRFGFAPGTVELYAE 60
Query: 90 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGK 149
KV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+VSGK
Sbjct: 61 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGK 112
Query: 150 LRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPT 209
LR Q AKSMKF DG MI SG P NEY+D+A RHVLLRQGVLGIKVKIML WD GK GP
Sbjct: 113 LRGQCAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQGVLGIKVKIMLPWDPNGKIGPK 172
Query: 210 TPLPDLVT-IHPLKEEVYVAP 229
PLPD V+ + P E +Y P
Sbjct: 173 KPLPDNVSVVEPKDEIMYSTP 193
>gi|365758790|gb|EHN00617.1| Rps3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/231 (66%), Positives = 185/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE + P+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEQILTPS 221
>gi|367008326|ref|XP_003678663.1| 40S ribosomal protein S3 [Torulaspora delbrueckii]
gi|359746320|emb|CCE89452.1| hypothetical protein TDEL_0A01200 [Torulaspora delbrueckii]
Length = 245
Score = 302 bits (774), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 157/236 (66%), Positives = 185/236 (78%), Gaps = 13/236 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TEIIIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYKPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAKSMKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKSMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
RHVLLRQGVLGIKVKIM + Q + GP LPD V I KEE P A S++
Sbjct: 173 RHVLLRQGVLGIKVKIMRDPAQ-SRTGPKA-LPDAVKIVEPKEE---EPILAASVK 223
>gi|189308068|gb|ACD86918.1| ribosomal protein S3 [Caenorhabditis brenneri]
Length = 205
Score = 302 bits (773), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 151/204 (74%), Positives = 169/204 (82%), Gaps = 8/204 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGP 208
LRQGV+GIKVKIML +D +G+ GP
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGQNGP 202
>gi|444317298|ref|XP_004179306.1| hypothetical protein TBLA_0B09710 [Tetrapisispora blattae CBS 6284]
gi|387512346|emb|CCH59787.1| hypothetical protein TBLA_0B09710 [Tetrapisispora blattae CBS 6284]
Length = 248
Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/227 (67%), Positives = 184/227 (81%), Gaps = 11/227 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TEIIIRATRTQ VLGE GR
Sbjct: 13 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATRTQEVLGENGR 72
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELT +VQKRFK+ SV LYAE++ +RGL A+AQAES+++KLL GLA+RRA YGV+R
Sbjct: 73 RINELTLLVQKRFKYKAGSVVLYAERIQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 132
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL
Sbjct: 133 YVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVL 184
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
+RQGVLGIKVKIM + + + GP + LPD V I P +EE VAP+
Sbjct: 185 MRQGVLGIKVKIMRD-PARARFGPRS-LPDAVKIVEPKEEETIVAPS 229
>gi|156840842|ref|XP_001643799.1| hypothetical protein Kpol_480p28 [Vanderwaltozyma polyspora DSM
70294]
gi|156114424|gb|EDO15941.1| hypothetical protein Kpol_480p28 [Vanderwaltozyma polyspora DSM
70294]
Length = 234
Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/231 (67%), Positives = 184/231 (79%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TEIIIRATRTQ+VLG
Sbjct: 1 MVAFISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFKF ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKFKPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDVAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + + K GP LPD VTI P +EE + P+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PARSKVGPRA-LPDAVTIVEPKEEEKILVPS 221
>gi|241865275|gb|ACS68715.1| 40S RPS3B [Sonneratia alba]
gi|241865508|gb|ACS68786.1| RPS3B [Sonneratia alba]
Length = 156
Score = 301 bits (771), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/164 (91%), Positives = 154/164 (93%), Gaps = 8/164 (4%)
Query: 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAE 103
+RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAE
Sbjct: 1 MRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAE 60
Query: 104 SLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDG 163
SLRYKLLGGLAVRRACYGVLRF+M+SGAKGCE VIVSGKLRAQRAKSMKFKDG
Sbjct: 61 SLRYKLLGGLAVRRACYGVLRFVMDSGAKGCE--------VIVSGKLRAQRAKSMKFKDG 112
Query: 164 YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQG 207
YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML+WD KGKQG
Sbjct: 113 YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQG 156
>gi|468426|gb|AAA35010.1| ribosomal protein S3 [Saccharomyces cerevisiae]
Length = 240
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/231 (66%), Positives = 185/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGV +AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVNYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221
>gi|365988130|ref|XP_003670896.1| hypothetical protein NDAI_0F03350 [Naumovozyma dairenensis CBS 421]
gi|343769667|emb|CCD25653.1| hypothetical protein NDAI_0F03350 [Naumovozyma dairenensis CBS 421]
Length = 243
Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 183/231 (79%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL AIAQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYTPGTIVLYAERVQDRGLSAIAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPV ++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVKDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K GP LPD VTI P EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PATAKTGPRA-LPDAVTIVEPKDEEPILAPS 221
>gi|255711614|ref|XP_002552090.1| 40S ribosomal protein S3 [Lachancea thermotolerans]
gi|238933468|emb|CAR21652.1| KLTH0B06974p [Lachancea thermotolerans CBS 6340]
Length = 248
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/227 (67%), Positives = 181/227 (79%), Gaps = 10/227 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVAVISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ S+ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYQAGSIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V++SGKLRA RAKSMKF DG++I SGQPV ++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVISGKLRAARAKSMKFADGFLIHSGQPVADFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
RHVLLRQGVLGIKVKIM + + + GP LPD V I KEE YV
Sbjct: 173 RHVLLRQGVLGIKVKIMRD-PARNRVGPKA-LPDAVKILEPKEEEYV 217
>gi|50553820|ref|XP_504321.1| 40S ribosomal protein S3 [Yarrowia lipolytica]
gi|49650190|emb|CAG79920.1| YALI0E23694p [Yarrowia lipolytica CLIB122]
Length = 246
Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/224 (66%), Positives = 176/224 (78%), Gaps = 8/224 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRK VADGVF+AELNE TRELAE+GYSGVEVR+TP +TEI++RAT T VLGE GR
Sbjct: 7 ISKKRKIVADGVFYAELNEFFTRELAEEGYSGVEVRLTPTKTEIVVRATHTNKVLGENGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIREL S+VQKRF+ PE SV +YAE+V RGL A+AQ ES++YKLL GLA+RRA YGV+R
Sbjct: 67 RIRELMSLVQKRFRLPEGSVTIYAERVQERGLSAVAQCESVKYKLLNGLAIRRAAYGVVR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++M++GAKG E V+VSGKLRA RAKSMKF DG+MI SGQPVN++ID+A RHVL
Sbjct: 127 YVMDAGAKGVE--------VVVSGKLRAARAKSMKFADGFMIHSGQPVNDFIDTATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
LRQGVLG+KVKIM + K G LPD VTI KE+ VA
Sbjct: 179 LRQGVLGVKVKIMRDPATSKKPGVPKSLPDAVTIFEPKEDAVVA 222
>gi|302306412|ref|NP_982809.2| 40S ribosomal protein S3 [Ashbya gossypii ATCC 10895]
gi|299788504|gb|AAS50633.2| ABL138Wp [Ashbya gossypii ATCC 10895]
gi|374106011|gb|AEY94921.1| FABL138Wp [Ashbya gossypii FDAG1]
Length = 244
Score = 300 bits (768), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 181/231 (78%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP TE+IIRATRTQ+VLG
Sbjct: 1 MVAVISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTTTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ L+AE+V RGL A+AQAESLR+KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYQPGTIVLFAERVQERGLSAVAQAESLRFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V++SGKLRA RAKSMKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVISGKLRAARAKSMKFSDGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVLLRQGVLGIKVKIM + K + GP LPD V I P E+ V P+
Sbjct: 173 RHVLLRQGVLGIKVKIMKD-PSKSRTGPKA-LPDAVKILEPKDEDAVVEPS 221
>gi|70947163|ref|XP_743223.1| ribosomal protein S3 [Plasmodium chabaudi chabaudi]
gi|56522619|emb|CAH84779.1| ribosomal protein S3, putative [Plasmodium chabaudi chabaudi]
Length = 220
Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 154/216 (71%), Positives = 176/216 (81%), Gaps = 9/216 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QISKKRKF+ DGVF AELNE L R LAEDGYSGVEVRVTP+RTE+IIRATRT+ VLG+KG
Sbjct: 2 QISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLGDKG 61
Query: 64 RRIRELTSVVQKR-FKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RRIRELTS+VQKR F NSVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGV
Sbjct: 62 RRIRELTSLVQKRFFNKSTNSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGV 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR IMESGAKGCE VIVSGKLRAQRAKSMKFKDGY+IS+G+P ++++A R
Sbjct: 122 LRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYLISTGEPSKRFVNTATRS 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
L+QGVLGIKVKIML + G + LPD +++
Sbjct: 174 AQLKQGVLGIKVKIMLPTAIDTRTGLPSILPDNISV 209
>gi|147810849|emb|CAN71792.1| hypothetical protein VITISV_022106 [Vitis vinifera]
Length = 252
Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 165/256 (64%), Positives = 186/256 (72%), Gaps = 26/256 (10%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGR-----RIRELTSVVQKRFKFPENSVELYAE-KVNNRGLCAIAQAESLRY------- 107
+K + R + ++ + F + + A + + C + E L +
Sbjct: 61 KKDQGADFQWFRRGLNFLKTVWSFMLRKLTIGASVPLLRQSHCDTSFLEDLPFGGKPEIG 120
Query: 108 ----KLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDG 163
+ L ACYGVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDG
Sbjct: 121 HYYCHIRSYLKFSLACYGVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDG 172
Query: 164 YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLK 222
YMISSGQPV +YIDSAVRHVLLRQGVLGIKVKIML+WD KGKQGPTTPLPDLVTIH P +
Sbjct: 173 YMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDLVTIHXPKE 232
Query: 223 EEVYVAPATATSIELP 238
EE YV P T+IE+P
Sbjct: 233 EEEYVPPVLTTNIEVP 248
>gi|124810210|ref|XP_001348801.1| 40S ribosomal protein S3, putative [Plasmodium falciparum 3D7]
gi|23497701|gb|AAN37240.1| 40S ribosomal protein S3, putative [Plasmodium falciparum 3D7]
Length = 221
Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/219 (69%), Positives = 178/219 (81%), Gaps = 9/219 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ ISKKRKF+ DGVF AELNE L R LAEDGYSGVEVRVTP+RTE+IIRATRT+ VLG
Sbjct: 1 MSAPISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLG 60
Query: 61 EKGRRIRELTSVVQKR-FKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+KGRRIRELTS+VQKR F NSVEL+AE+V +RGLCA+AQAESLRYKLL GLAVRRAC
Sbjct: 61 DKGRRIRELTSLVQKRFFNKSTNSVELFAERVEHRGLCAMAQAESLRYKLLKGLAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLR IMESGAKGCE VIVSGKLRAQRAKSMKF+DGY+IS+G+P ++++A
Sbjct: 121 YGVLRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
R L+QGVLGIKVKIML + G T+ LPD +++
Sbjct: 173 TRSAQLKQGVLGIKVKIMLPTAIDTRTGLTSILPDNISV 211
>gi|50291535|ref|XP_448200.1| 40S ribosomal protein S3 [Candida glabrata CBS 138]
gi|49527511|emb|CAG61151.1| unnamed protein product [Candida glabrata]
Length = 247
Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 151/230 (65%), Positives = 181/230 (78%), Gaps = 11/230 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M + ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVSLISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDVAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAP 229
RHVL+RQGVLGIKVKIM D +G LPD V+I P EE + P
Sbjct: 173 RHVLMRQGVLGIKVKIM--RDPATNRGGPRALPDAVSIVEPKDEEPVLTP 220
>gi|156100003|ref|XP_001615729.1| 40S ribosomal protein S3 [Plasmodium vivax Sal-1]
gi|221059123|ref|XP_002260207.1| ribosomal protein S3 [Plasmodium knowlesi strain H]
gi|148804603|gb|EDL46002.1| 40S ribosomal protein S3, putative [Plasmodium vivax]
gi|193810280|emb|CAQ41474.1| ribosomal protein S3, putative [Plasmodium knowlesi strain H]
gi|389585194|dbj|GAB67925.1| 40S ribosomal protein S3 [Plasmodium cynomolgi strain B]
Length = 222
Score = 299 bits (765), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 180/229 (78%), Gaps = 9/229 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ ISKKRKF+ DGVF AELNE L R LAEDGYSGVEVRVTP+RTE+IIRATRT+ VLG
Sbjct: 1 MSAPISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLG 60
Query: 61 EKGRRIRELTSVVQKR-FKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+KGRRIRELTS+VQKR F NSVEL+AE+V +RGLCA+AQAESLRYKLL GLAVRRAC
Sbjct: 61 DKGRRIRELTSLVQKRFFNKSTNSVELFAERVEHRGLCAMAQAESLRYKLLKGLAVRRAC 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YGVLR IMESGAKGCE VIVSGKLRAQRAKSMKF+DGY+IS+G+P ++++A
Sbjct: 121 YGVLRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
R L+QGVLGIKVKIML K G + LPD +++ K E A
Sbjct: 173 TRSAQLKQGVLGIKVKIMLPTAVDSKTGLPSILPDNISVLEPKTETIEA 221
>gi|294877217|ref|XP_002767926.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239869954|gb|EER00644.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 200
Score = 298 bits (764), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 145/198 (73%), Positives = 171/198 (86%), Gaps = 8/198 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL VRRA YGVL
Sbjct: 69 RRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPVRRAAYGVL 128
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y+D A+R+V
Sbjct: 129 RFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMYVDQAIRNV 180
Query: 184 LLRQGVLGIKVKIMLEWD 201
+RQG+LGI+VKIM+ +D
Sbjct: 181 DMRQGILGIRVKIMMAYD 198
>gi|367007661|ref|XP_003688560.1| 40S ribosomal protein S3 [Tetrapisispora phaffii CBS 4417]
gi|357526869|emb|CCE66126.1| hypothetical protein TPHA_0O01590 [Tetrapisispora phaffii CBS 4417]
Length = 238
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/224 (67%), Positives = 178/224 (79%), Gaps = 10/224 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TEIIIRATRTQ VLG
Sbjct: 1 MVAYISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATRTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFKF +V LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKFKAGTVVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V++SGKLRA RAK+MK+ DG++I SGQPVN++ID A
Sbjct: 121 GVIRYVMESGAKGCE--------VVISGKLRAARAKAMKYADGFLIHSGQPVNDFIDVAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVL+RQGVLGI++KIM + K K GP LPD V I KEE
Sbjct: 173 RHVLMRQGVLGIRIKIMRD-PSKSKVGPRA-LPDAVNIVEPKEE 214
>gi|391337612|ref|XP_003743161.1| PREDICTED: 40S ribosomal protein S3-like [Metaseiulus occidentalis]
Length = 239
Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 152/218 (69%), Positives = 172/218 (78%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M QISKKR+FVADGVF AELNE L RELAE+GYSGVEVR +T+III ATRTQ+VLG
Sbjct: 1 MPGQISKKRRFVADGVFNAELNEFLRRELAENGYSGVEVRNGATKTDIIIMATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGR+IRELT+VVQKRF F E +V L+AEKV+ RGLCAI Q ESLRYKL+GGLAVRRACY
Sbjct: 61 EKGRKIRELTAVVQKRFGFKEGTVNLFAEKVSARGLCAITQCESLRYKLIGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
VLR IME+ A GCE V+VSGKLR QRAKSMKF +G MI SG P N Y+++AV
Sbjct: 121 SVLRCIMEAEAMGCE--------VVVSGKLRGQRAKSMKFVEGLMIHSGDPTNHYVETAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RHVLL+QGVLGIKVKIM D GK+GP LPD V +
Sbjct: 173 RHVLLKQGVLGIKVKIMHPHDPLGKRGPAQLLPDKVHV 210
>gi|254580157|ref|XP_002496064.1| 40S ribosomal protein S3 [Zygosaccharomyces rouxii]
gi|238938955|emb|CAR27131.1| ZYRO0C09636p [Zygosaccharomyces rouxii]
Length = 246
Score = 296 bits (759), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 153/231 (66%), Positives = 181/231 (78%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSG EVRVTP +TEIIIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGTEVRVTPTKTEIIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 EGGRRINELTLLVQKRFKYKPGTIVLYAERVQERGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAKSMKF DG++I SGQPV ++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKSMKFADGFLIHSGQPVADFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + GP LPD VTI P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PATTPSGPNA-LPDAVTIVDPKEEEPILAPS 221
>gi|68070737|ref|XP_677280.1| ribosomal protein S3 [Plasmodium berghei strain ANKA]
gi|56497334|emb|CAH98166.1| ribosomal protein S3, putative [Plasmodium berghei]
Length = 218
Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/216 (71%), Positives = 177/216 (81%), Gaps = 11/216 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKF+ DGVF AELNE L R LAEDGYSGVEVRVTP+RTE+IIRATRT+ VLG+KGR
Sbjct: 1 ISKKRKFINDGVFQAELNEFLARILAEDGYSGVEVRVTPIRTEVIIRATRTREVLGDKGR 60
Query: 65 RIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RIRELTS+VQKRF F + NSVEL+AE+V NRGLCA+AQAESLRYKLL GLAVRRACYGV
Sbjct: 61 RIRELTSLVQKRF-FNKLTNSVELFAERVENRGLCAMAQAESLRYKLLKGLAVRRACYGV 119
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR IMESGAKGCE VIVSGKLRAQRAKSMKF+DGY+IS+G+P ++++A R
Sbjct: 120 LRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYLISTGEPSKRFVNTATRS 171
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
L+QGVLGIKVKIML K G + LPD +++
Sbjct: 172 AQLKQGVLGIKVKIMLPTAIDTKTGLPSILPDNISV 207
>gi|403216300|emb|CCK70797.1| hypothetical protein KNAG_0F01290 [Kazachstania naganishii CBS
8797]
Length = 249
Score = 296 bits (757), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 150/224 (66%), Positives = 177/224 (79%), Gaps = 10/224 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQEVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ L+AE+V RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLFAERVQERGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDVAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVL+RQGVLGIKVKIM + K GP LPD VTI K+E
Sbjct: 173 RHVLMRQGVLGIKVKIMRDPATNTK-GPKA-LPDAVTIVEPKDE 214
>gi|254564691|ref|XP_002489456.1| 40S ribosomal protein S3 [Komagataella pastoris GS115]
gi|238029252|emb|CAY67175.1| Protein component of the small (40S) ribosomal subunit
[Komagataella pastoris GS115]
gi|328349885|emb|CCA36285.1| 40S ribosomal protein S3 [Komagataella pastoris CBS 7435]
Length = 243
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 173/220 (78%), Gaps = 10/220 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRK VADGVF+AELNE TRELAEDGYSGVEVRVTP TEIIIRAT+T +VLGE GR
Sbjct: 6 ISKKRKLVADGVFYAELNEYFTRELAEDGYSGVEVRVTPTTTEIIIRATQTNSVLGENGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRFK E V LYAE+V +RGL A+ Q ESLRYKLL GLA+RRA YGV+R
Sbjct: 66 RIRELTALVQKRFKIDEGKVILYAERVQDRGLSAVTQCESLRYKLLNGLAIRRAAYGVVR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F+M+SGAKG E V+VSGKLRA RAKSMKF DG+MI SGQP ++I++A RHVL
Sbjct: 126 FVMDSGAKGVE--------VVVSGKLRAARAKSMKFADGFMIHSGQPAKDFIETATRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
LRQGVLGIKVKIM + + GP LPD V IH K+E
Sbjct: 178 LRQGVLGIKVKIMRD-PAAARTGPKA-LPDFVKIHEPKDE 215
>gi|50306913|ref|XP_453432.1| 40S ribosomal protein S3 [Kluyveromyces lactis NRRL Y-1140]
gi|49642566|emb|CAH00528.1| KLLA0D08305p [Kluyveromyces lactis]
Length = 237
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/231 (64%), Positives = 184/231 (79%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TEIIIRAT+ Q+V+G
Sbjct: 1 MVAIISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEIIIRATKVQDVVG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +++KRFK+ ++ LYAE+V++RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLIEKRFKYKRGTIALYAERVHDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V++SGKLRA RAKSMKF DG++I SGQPVN++I++A
Sbjct: 121 GVVRYVMESGAKGCE--------VVISGKLRAARAKSMKFADGFLIHSGQPVNDFIETAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVLLRQGVLGIKVKIM + + GP LPD VT I P +EE + P+
Sbjct: 173 RHVLLRQGVLGIKVKIMKD-PSRNTSGPKA-LPDAVTIIEPKEEEPVLEPS 221
>gi|406603719|emb|CCH44744.1| 40S ribosomal protein [Wickerhamomyces ciferrii]
Length = 246
Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 184/237 (77%), Gaps = 11/237 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE GY+GVEVRVTP RTE+IIRAT+T VLG
Sbjct: 1 MVNIISKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRVTPTRTEVIIRATQTNAVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELTS+VQKRFKF ++ LYAE+V +RGL A+AQAESL++KLL GLA+RRA Y
Sbjct: 61 ENGRRIYELTSLVQKRFKFAPGTIVLYAERVQDRGLSAVAQAESLKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKG E V++SGKLRA RAK+MKF+DG++I SGQPV ++ID+A
Sbjct: 121 GVVRYVMESGAKGVE--------VVISGKLRAARAKAMKFQDGFLIHSGQPVKDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
RHVLLRQGVLG+KVKIM + + GP + LPD V +H P ++E AP + ++
Sbjct: 173 RHVLLRQGVLGVKVKIMRD-PATNRVGPKS-LPDYVKVHEPKEDEAIPAPTVKSYVQ 227
>gi|343887316|dbj|BAK61862.1| 40S ribosomal protein S3 [Citrus unshiu]
Length = 184
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 153/190 (80%), Positives = 157/190 (82%), Gaps = 17/190 (8%)
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GEKGRRIRELTS VQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC
Sbjct: 3 GEKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 62
Query: 120 YGVLRF-IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
GVLRF I+ESGAKGCE VIVSGKLRAQRA SMKFKDGYMISSG PV EYIDS
Sbjct: 63 CGVLRFIILESGAKGCE--------VIVSGKLRAQRATSMKFKDGYMISSGYPVKEYIDS 114
Query: 179 AVRHVLLRQ--------GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
AVRHVLLRQ GVLGIKVKIML WD KGKQ P TPLPDLVTIH KEE V P
Sbjct: 115 AVRHVLLRQASSIFCGYGVLGIKVKIMLAWDAKGKQRPVTPLPDLVTIHTPKEEENVPPI 174
Query: 231 TATSIELPVA 240
+TS+ELP+A
Sbjct: 175 MSTSLELPIA 184
>gi|49258823|pdb|1S1H|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 192
Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/193 (72%), Positives = 166/193 (86%), Gaps = 8/193 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GR
Sbjct: 4 ISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R
Sbjct: 64 RINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL
Sbjct: 124 YVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVL 175
Query: 185 LRQGVLGIKVKIM 197
+RQGVLGIKVKIM
Sbjct: 176 MRQGVLGIKVKIM 188
>gi|290977385|ref|XP_002671418.1| predicted protein [Naegleria gruberi]
gi|284084987|gb|EFC38674.1| predicted protein [Naegleria gruberi]
Length = 228
Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/231 (63%), Positives = 176/231 (76%), Gaps = 10/231 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
I+KK+ FV G+ +AELNE L RELAEDGYSGVEVR T RTEIIIRATR Q V+G+
Sbjct: 5 ANINKKKHFVHQGLLYAELNEFLKRELAEDGYSGVEVRATVARTEIIIRATRPQTVVGDN 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRR++ELTSV+QKRF F E +ELYAE V N+GL AIAQAESL+ KL+ G+AVR+ACYGV
Sbjct: 65 GRRMKELTSVIQKRFGFEEGKIELYAENVKNKGLSAIAQAESLKQKLMEGVAVRKACYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRF+M+SGAKG VIVSGKLRAQRAKSMKF +GYMI +GQPV +Y+D AVRH
Sbjct: 125 LRFVMDSGAKG--------GAVIVSGKLRAQRAKSMKFAEGYMIRTGQPVKDYVDIAVRH 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTT-PLPDLVTIHPLKEEVYVAPATA 232
V ++QGVLGIKVK+ML W + G P PD+V++H KE++ V P A
Sbjct: 177 VYMKQGVLGIKVKVMLPWVVGTQAGSNQKPQPDVVSVHEPKEDLSV-PTVA 226
>gi|78190807|gb|ABB29725.1| ribosomal protein 3 small subunit [Monosiga brevicollis]
Length = 190
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/197 (71%), Positives = 162/197 (82%), Gaps = 8/197 (4%)
Query: 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87
ELAEDGY+GVE++ TP TEI+I ATRTQ+VLGEKGRRIRELT+ +QKRF F ++ VEL+
Sbjct: 1 ELAEDGYAGVEIKKTPKSTEIVILATRTQHVLGEKGRRIRELTAFIQKRFGFQKDEVELF 60
Query: 88 AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVS 147
AEKV NRGLCA+AQ E+LRYKL GGLAVRRACYGV+RF+MESGAKGCE VIVS
Sbjct: 61 AEKVANRGLCAVAQCENLRYKLTGGLAVRRACYGVVRFVMESGAKGCE--------VIVS 112
Query: 148 GKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQG 207
GKLRAQRAK+MKF DG+MISSG P EYID+AVRHV +RQG++GIKVKIML D GK G
Sbjct: 113 GKLRAQRAKAMKFGDGFMISSGNPTREYIDTAVRHVPMRQGMIGIKVKIMLPHDPSGKTG 172
Query: 208 PTTPLPDLVTIHPLKEE 224
P PLPD +TI KEE
Sbjct: 173 PKAPLPDAITILEAKEE 189
>gi|78190655|gb|ABB29649.1| ribosomal protein 3 small subunit [Suberites fuscus]
Length = 176
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/184 (79%), Positives = 153/184 (83%), Gaps = 8/184 (4%)
Query: 35 SGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNR 94
SGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FP+ +VELYAEKV R
Sbjct: 1 SGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFSFPDGTVELYAEKVAAR 60
Query: 95 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQR 154
GLCAIAQ ESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE VIVSGKLR QR
Sbjct: 61 GLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VIVSGKLRGQR 112
Query: 155 AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
AKSMKF DG+MI SG P EYIDSAV HV LRQGVLGIKVKIML D GK GP PLPD
Sbjct: 113 AKSMKFVDGFMIHSGYPTREYIDSAVTHVHLRQGVLGIKVKIMLPHDPTGKSGPKKPLPD 172
Query: 215 LVTI 218
V++
Sbjct: 173 QVSV 176
>gi|281500809|pdb|3JYV|C Chain C, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 188
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/192 (71%), Positives = 165/192 (85%), Gaps = 8/192 (4%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
SKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GRR
Sbjct: 1 SKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRR 60
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
I ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R+
Sbjct: 61 INELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRY 120
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
+MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL+
Sbjct: 121 VMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLM 172
Query: 186 RQGVLGIKVKIM 197
RQGVLGIKVKIM
Sbjct: 173 RQGVLGIKVKIM 184
>gi|328867452|gb|EGG15834.1| 40S ribosomal protein S3 [Dictyostelium fasciculatum]
Length = 219
Score = 286 bits (731), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 142/216 (65%), Positives = 165/216 (76%), Gaps = 9/216 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKKRKFVADGVF AELNE+ TRE +D GYSGVE++ P TEI IRA++TQ ++GE
Sbjct: 7 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKQGPASTEITIRASKTQAIVGEN 66
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RR+ EL S+VQKRF F E +V ++AEKV NRGLCA+AQAESL+ KLL GL VRRACY +
Sbjct: 67 ARRVHELCSLVQKRFGFKEGAVTIFAEKVQNRGLCAVAQAESLKIKLLAGLPVRRACYAI 126
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
L +M GAKGCE VIVSGKLRAQRAKSMKF+DGYMI SGQP +++D AVRH
Sbjct: 127 LHQVMTKGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIKSGQPSQQFVDFAVRH 178
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
VLLRQG LG+KV IML D GK G T P PD+V I
Sbjct: 179 VLLRQGTLGVKVAIMLPHDPTGKNGCTIPQPDIVII 214
>gi|358336359|dbj|GAA54888.1| small subunit ribosomal protein S3e [Clonorchis sinensis]
Length = 230
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 149/222 (67%), Positives = 170/222 (76%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
++S KRKF+ GVF AEL+E L RELAEDGYSGV+VR + TE+II AT+TQ+VLGE
Sbjct: 6 KMSLKRKFIKAGVFKAELDEFLKRELAEDGYSGVQVRESRKYTEVIILATKTQSVLGEGC 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV++KRF F E ++EL AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLEKRFGFAEGTLELCAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAKSMKF DG MI SG PVN YID AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKSMKFSDGLMIHSGDPVNYYIDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LL QG+LGIKVKIM+ D GK GP PLPD VTI KEE
Sbjct: 178 LLPQGILGIKVKIMMNHDSSGKTGPRKPLPDTVTILAAKEET 219
>gi|29841430|gb|AAP06462.1| similar to GenBank Accession Number AK010678 ribosomal protein S3
in Mus musculus [Schistosoma japonicum]
Length = 226
Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|226476708|emb|CAX72246.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476710|emb|CAX72247.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476714|emb|CAX72249.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476718|emb|CAX72251.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476722|emb|CAX72253.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476724|emb|CAX72254.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476726|emb|CAX72255.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476728|emb|CAX72256.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476730|emb|CAX72257.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476732|emb|CAX72258.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226476734|emb|CAX72259.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482826|emb|CAX79380.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482828|emb|CAX79381.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482830|emb|CAX79382.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482832|emb|CAX79383.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482834|emb|CAX79384.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482838|emb|CAX79386.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482840|emb|CAX79387.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482842|emb|CAX79388.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482844|emb|CAX79389.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482846|emb|CAX79390.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482848|emb|CAX79391.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482850|emb|CAX79392.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482856|emb|CAX79395.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482858|emb|CAX79396.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482860|emb|CAX79397.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482862|emb|CAX79398.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482866|emb|CAX79400.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482868|emb|CAX79401.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 285 bits (730), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|189502878|gb|ACE06820.1| unknown [Schistosoma japonicum]
Length = 230
Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|226476720|emb|CAX72252.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTLRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|226482836|emb|CAX79385.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 171/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPNGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|226482824|emb|CAX79379.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESL+YKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLKYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|256075800|ref|XP_002574204.1| 40S ribosomal protein S3 [Schistosoma mansoni]
gi|238659403|emb|CAZ30437.1| 40S ribosomal protein S3, putative [Schistosoma mansoni]
Length = 230
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 171/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKF+ GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFIKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF F + ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFADGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN YID AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNNYIDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIML+ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMLDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|226476736|emb|CAX72260.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 172/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG +I SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLLIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|289724874|gb|ADD18372.1| 40S ribosomal protein S3 [Glossina morsitans morsitans]
Length = 225
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/222 (66%), Positives = 171/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKF+ GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 1 KISLKRKFIKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 60
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF F + ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 61 RRIRELTSVLQKRFGFADGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 120
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN YID AVRHV
Sbjct: 121 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNNYIDKAVRHV 172
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIML+ D GK+GP PLPD VTI KEEV
Sbjct: 173 QLPQGILGIKVKIMLDHDSSGKKGPRKPLPDTVTILAAKEEV 214
>gi|226482864|emb|CAX79399.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 171/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAE LRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAEPLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|320580879|gb|EFW95101.1| 40S ribosomal protein S3 [Ogataea parapolymorpha DL-1]
Length = 235
Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/240 (61%), Positives = 177/240 (73%), Gaps = 11/240 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M SKKRK VADGVF+AELNE TREL E+GY+GVEVR+TP +TE+II AT TQ VLG
Sbjct: 1 MVANFSKKRKLVADGVFYAELNEFFTRELPEEGYAGVEVRITPTKTEVIISATNTQRVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRI ELTS++QKRFKF ++ L+AE+V +RGL A+ Q ESL+YKLL GLAVRRA Y
Sbjct: 61 EKGRRINELTSLIQKRFKFAPGTIVLFAERVQDRGLSAVTQCESLKYKLLNGLAVRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R +MESGAKG E V++SGK + RAKSMKF DG+MI SGQPVN++ID A
Sbjct: 121 GVIRHVMESGAKGVE--------VVISGKSKGARAKSMKFGDGFMIHSGQPVNDFIDVAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPVA 240
RHVLLRQGVLGIKVKIM + ++GP LPD V ++ KE+ VA + PVA
Sbjct: 173 RHVLLRQGVLGIKVKIMKD-PATNRRGPKA-LPDSVVVYDPKEDQQVAEPYVNDFK-PVA 229
>gi|379994413|gb|AFD22833.1| 40S ribosomal protein S3 [Collodictyon triciliatum]
Length = 173
Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 137/181 (75%), Positives = 156/181 (86%), Gaps = 8/181 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M+ +ISKK+KFVADGVFFAELNE TR+L EDGY+GVEVRVTP RTE+IIRATRTQNVLG
Sbjct: 1 MSLEISKKKKFVADGVFFAELNEFFTRQLGEDGYAGVEVRVTPARTEVIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRIRELTS+VQKRF+F E ++EL+AE V++RGLCA+AQAESLRYKLLGGLAVRRACY
Sbjct: 61 DKGRRIRELTSLVQKRFRFKEGTIELFAENVSSRGLCAVAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF ME+GAKG E V VSGKLRAQRAK MKF+DGYMI SG P Y+DSAV
Sbjct: 121 GVMRFAMEAGAKGVE--------VAVSGKLRAQRAKVMKFRDGYMIKSGNPTKVYVDSAV 172
Query: 181 R 181
R
Sbjct: 173 R 173
>gi|226476712|emb|CAX72248.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 230
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 171/222 (77%), Gaps = 8/222 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+IS KRKFV GVF AEL+E L RELA+DGYSG +VR + TE+II AT+TQ+VLGE
Sbjct: 6 KISLKRKFVKAGVFKAELDEFLKRELADDGYSGFQVRESRKYTEVIILATKTQSVLGEGS 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL AIAQAESLRYKL GL VR+ACYG+L
Sbjct: 66 RRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLSAIAQAESLRYKLTYGLPVRKACYGIL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RFIMESGA+G E VIVSGK++ QRAK+MKF G MI SG PVN Y+D AVRHV
Sbjct: 126 RFIMESGARGAE--------VIVSGKIKGQRAKAMKFCYGLMIHSGDPVNYYVDKAVRHV 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
L QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 178 QLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 219
>gi|188572377|gb|ACD65095.1| putative 40S ribosomal protein RPS3 [Novocrania anomala]
Length = 170
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/178 (79%), Positives = 152/178 (85%), Gaps = 8/178 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT+ISKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRT NVLG
Sbjct: 1 MATRISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTHNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPE +VELYAEKV RGLCAIAQ ESLRYKL+GGLAVR+ACY
Sbjct: 61 EKGRRIRELTSVVQKRFSFPEGTVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRQACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
GVLRFIMESGA GCE V+VSGKLR QRAK++KF DG MI G+P N+Y ++
Sbjct: 121 GVLRFIMESGANGCE--------VVVSGKLRGQRAKALKFVDGLMIHRGEPTNDYAET 170
>gi|160331719|ref|XP_001712566.1| rps3 [Hemiselmis andersenii]
gi|159766015|gb|ABW98241.1| rps3 [Hemiselmis andersenii]
Length = 246
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 127/218 (58%), Positives = 174/218 (79%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ++SK++KF+ DGVFF+ELNE+L+REL+++GY+ VE+R P++TEII++ T+T ++LG
Sbjct: 30 MNKKLSKQKKFINDGVFFSELNELLSRELSDEGYTNVEIRKAPLKTEIILKMTQTHSILG 89
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+GRRI+E+ +++KRF+F E S+E+Y EK+ N+ LCAI+QAESLRYKLL G+ +RRACY
Sbjct: 90 SRGRRIKEINGLIKKRFQFDEKSLEIYVEKIINKNLCAISQAESLRYKLLRGMVIRRACY 149
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
L+ MESGAKGC ++S VSGKLRAQRAK+MKF DGY+I SG+PV +YI+ A
Sbjct: 150 STLKSTMESGAKGC----IIS----VSGKLRAQRAKTMKFIDGYIIHSGKPVEDYIEKAT 201
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RH LRQGV+GIK+ IML WD G +GP PLPD+VT+
Sbjct: 202 RHCFLRQGVIGIKISIMLPWDPAGVRGPKKPLPDVVTV 239
>gi|290349642|dbj|BAI77929.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|290349644|dbj|BAI77930.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 165
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/172 (81%), Positives = 146/172 (84%), Gaps = 8/172 (4%)
Query: 34 YSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93
YSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF F +VELYAEKV
Sbjct: 1 YSGVEVRVTPTRTEIIIMATRTQNVLGEKGRRIRELTAVVQKRFGFAPGTVELYAEKVAT 60
Query: 94 RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ 153
RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR Q
Sbjct: 61 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQ 112
Query: 154 RAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
RAKSMKF DG MI SG P NEY+D+A RHVLLRQGVLGIKVKIML WD GK
Sbjct: 113 RAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQGVLGIKVKIMLPWDPNGK 164
>gi|294897613|ref|XP_002776024.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239882489|gb|EER07840.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 193
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/184 (73%), Positives = 158/184 (85%), Gaps = 8/184 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL VRRA YGVL
Sbjct: 69 RRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPVRRAAYGVL 128
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y+D A+R+V
Sbjct: 129 RFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMYVDQAIRNV 180
Query: 184 LLRQ 187
+RQ
Sbjct: 181 DMRQ 184
>gi|294886505|ref|XP_002771736.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239875488|gb|EER03552.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 184
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 136/184 (73%), Positives = 158/184 (85%), Gaps = 8/184 (4%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL VRRA YGVL
Sbjct: 69 RRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPVRRAAYGVL 128
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
RF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y+D A+R+V
Sbjct: 129 RFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMYVDQAIRNV 180
Query: 184 LLRQ 187
+RQ
Sbjct: 181 DMRQ 184
>gi|198456485|ref|XP_002136327.1| GA25150, partial [Drosophila pseudoobscura pseudoobscura]
gi|198142674|gb|EDY71398.1| GA25150, partial [Drosophila pseudoobscura pseudoobscura]
Length = 204
Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/199 (69%), Positives = 155/199 (77%), Gaps = 9/199 (4%)
Query: 41 VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIA 100
VTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F +ELYAEKV RGLCAIA
Sbjct: 1 VTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIA 60
Query: 101 QAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKF 160
QAESLRYKL GGLAVRRACYGVLRFI+ESGAKGCE V+VSGKLR QRAKSMKF
Sbjct: 61 QAESLRYKLTGGLAVRRACYGVLRFIIESGAKGCE--------VVVSGKLRGQRAKSMKF 112
Query: 161 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IH 219
DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML +D K K GP PLPD V+ +
Sbjct: 113 VDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKIMLPYDPKNKIGPKKPLPDNVSVVE 172
Query: 220 PLKEEVYVAPATATSIELP 238
P +E++Y P T I P
Sbjct: 173 PKEEKIYETPETEYKIPPP 191
>gi|426369809|ref|XP_004051876.1| PREDICTED: 40S ribosomal protein S3 isoform 3 [Gorilla gorilla
gorilla]
Length = 206
Score = 272 bits (696), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 140/181 (77%), Positives = 147/181 (81%), Gaps = 10/181 (5%)
Query: 54 RTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL 113
RTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGL
Sbjct: 17 RTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGL 76
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
AVRRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN
Sbjct: 77 AVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVN 128
Query: 174 EYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATAT 233
Y+D+AVRHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T
Sbjct: 129 YYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPI 186
Query: 234 S 234
S
Sbjct: 187 S 187
>gi|385302955|gb|EIF47058.1| 40s ribosomal protein s3 [Dekkera bruxellensis AWRI1499]
Length = 261
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 170/223 (76%), Gaps = 10/223 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+A+ ISK RK VADGVF+AELNE TREL E+GY+GVEVR+TP +T++IIRA++T VLG
Sbjct: 2 VASHISKTRKLVADGVFYAELNEFFTRELPEEGYAGVEVRITPTKTDVIIRASQTAMVLG 61
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT ++QKRF F S+ LYAE+V ++GL A Q ESLR+KLL GLAVRRA Y
Sbjct: 62 EKGRRIRELTMLLQKRFHFAPGSIVLYAERVRDKGLSAATQCESLRFKLLNGLAVRRAAY 121
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+RF ME+GAKG E VI++GK + RAK+MKF DG+MI +GQP ++ID A
Sbjct: 122 GVIRFAMEAGAKGVE--------VIIAGKAKGARAKAMKFADGFMIHTGQPAKDFIDVAC 173
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
RHVL+RQGVLG+KVKIML+ ++GP LPD V +H KE
Sbjct: 174 RHVLMRQGVLGLKVKIMLD-PATSQRGPKX-LPDAVIVHEPKE 214
>gi|66800843|ref|XP_629347.1| 40S ribosomal protein S3 [Dictyostelium discoideum AX4]
gi|74834663|sp|P90526.1|RS3_DICDI RecName: Full=40S ribosomal protein S3
gi|1688320|gb|AAB36959.1| RpgG [Dictyostelium discoideum]
gi|60462650|gb|EAL60852.1| 40S ribosomal protein S3 [Dictyostelium discoideum AX4]
Length = 218
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 141/218 (64%), Positives = 166/218 (76%), Gaps = 11/218 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKKRKFVADGVF AELNE+ TRE +D GYSGVE++ +P TEIIIRA++TQ V+G
Sbjct: 6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPN 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY +
Sbjct: 66 ARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAI 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
+ IM GAKGCE VIVSGKLRAQRAKSMKF+DGYMI SGQP ++ID A RH
Sbjct: 126 VHQIMTRGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGK-QGPTT-PLPDLVTI 218
VLLRQG LG+KV IML +D+ K G P PD+V I
Sbjct: 178 VLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215
>gi|330840814|ref|XP_003292404.1| 40S ribosomal protein S3 [Dictyostelium purpureum]
gi|325077360|gb|EGC31078.1| 40S ribosomal protein S3 [Dictyostelium purpureum]
Length = 218
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/220 (63%), Positives = 167/220 (75%), Gaps = 11/220 (5%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ Q+SKKRKFV DGVF AELNE+ TRE +D GYSGVE++ +P TEIIIRA++TQ V+G
Sbjct: 4 SLQMSKKRKFVLDGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVG 63
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY
Sbjct: 64 PNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACY 123
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
++ IM GAKGCE VIVSGKLRAQRAKSMKF+DGYMI SGQP +++D A
Sbjct: 124 AIVHQIMTRGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFVDFAC 175
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGK-QGPT-TPLPDLVTI 218
RHVLLRQG LG+KV IML +D+ GK G P PD+V I
Sbjct: 176 RHVLLRQGTLGVKVAIMLPYDESGKIHGACKIPQPDIVLI 215
>gi|38047525|gb|AAR09665.1| similar to Drosophila melanogaster RpS3, partial [Drosophila
yakuba]
Length = 172
Score = 269 bits (687), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 134/174 (77%), Positives = 146/174 (83%), Gaps = 8/174 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVR TP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRATPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVET 172
>gi|164598968|gb|ABX72228.2| ribosomal protein S3 [Ostrinia furnacalis]
Length = 166
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/171 (77%), Positives = 143/171 (83%), Gaps = 8/171 (4%)
Query: 48 IIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRY 107
III ATRTQ+VLGEKGRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRY
Sbjct: 1 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 60
Query: 108 KLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMIS 167
KL+GGLAVRRACYGVLRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI
Sbjct: 61 KLIGGLAVRRACYGVLRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIH 112
Query: 168 SGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
SG P N+Y+++A RHVLLRQGVLGIKVKIML WDQ+GK GP P PD + +
Sbjct: 113 SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 163
>gi|260946855|ref|XP_002617725.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849579|gb|EEQ39043.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 242
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/231 (59%), Positives = 168/231 (72%), Gaps = 10/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR T +TE+I++A+ TQ VLGE+GR
Sbjct: 9 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTNTKTEVIVKASNTQGVLGEQGR 68
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK P++ + +YAE+V R L A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 69 RIHELTSLIVKRFKLPQDGIVIYAERVEERALSAAVQAEALKAKLLSGLPIRRAAYGVLR 128
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP E+ID+A+RHVL
Sbjct: 129 FTMAAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTREFIDTAIRHVL 180
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSI 235
+RQGVLGI+VKIM + K K GP LPD V I KEE PA +
Sbjct: 181 MRQGVLGIRVKIMRD-PAKNKFGPKA-LPDAVMIAEYKEEDESVPAPTVKV 229
>gi|290562954|gb|ADD38871.1| 40S ribosomal protein S3-B [Lepeophtheirus salmonis]
Length = 229
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 136/225 (60%), Positives = 169/225 (75%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT+ + RKF+ G+F AEL+E+L RELAEDGYSG+ VR T +TE+II AT+TQNVLG
Sbjct: 1 MATKETTTRKFIKAGLFKAELDEMLKRELAEDGYSGIMVRGTHPKTEVIISATKTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
++ +RIRELTS+++KRF F + ++ LYA+KV RG+ A+AQAESL+Y+L GG+ VR+ACY
Sbjct: 61 DESKRIRELTSLIEKRFAFEQGTLSLYADKVAVRGISAVAQAESLKYRLTGGMPVRKACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
VL+ IMES AKG E VIVSGK++ QRAK+MKF DG MI SG PVN YI AV
Sbjct: 121 AVLKQIMESEAKGGE--------VIVSGKIKGQRAKAMKFTDGLMIHSGDPVNYYIAKAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVLL QG+LGIKVKIML+ D GK G LPD + I KEEV
Sbjct: 173 RHVLLPQGILGIKVKIMLDHDPAGKTGCKKTLPDHLYISEPKEEV 217
>gi|355567874|gb|EHH24215.1| hypothetical protein EGK_07837 [Macaca mulatta]
Length = 207
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/225 (63%), Positives = 154/225 (68%), Gaps = 44/225 (19%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV DG+F AELNE LT ELAE+ YSGVE
Sbjct: 1 MAVQISKKRKFVTDGMFKAELNEFLTWELAEECYSGVE---------------------- 38
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 39 --------------KRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 84
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVL+FIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 85 GVLQFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 136
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
RHVL RQGVLGIKVKIML W+ GK GP PLPD ++I K+E+
Sbjct: 137 RHVLFRQGVLGIKVKIMLPWNPTGKIGPKKPLPDHMSIVGPKDEI 181
>gi|237862670|gb|ACR24960.1| ribosomal protein S3 [Lepidochitona cinerea]
Length = 156
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 141/164 (85%), Gaps = 8/164 (4%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
ATQ+SKKRKFVADGVF AELNE LTRELAEDGYSGVEVRVT RTEIII AT+TQNVLGE
Sbjct: 1 ATQVSKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTQTRTEIIILATKTQNVLGE 60
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQ ESLRYKL+GGLAVRRACYG
Sbjct: 61 KGRRIRELTAVVQKRFNFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYG 120
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYM 165
VL+FIMES AKGCE V+VSGKLR QRAKSM F DG M
Sbjct: 121 VLKFIMESQAKGCE--------VVVSGKLRGQRAKSMTFVDGLM 156
>gi|149238902|ref|XP_001525327.1| 40S ribosomal protein S3 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450820|gb|EDK45076.1| 40S ribosomal protein S3 [Lodderomyces elongisporus NRRL YB-4239]
Length = 247
Score = 263 bits (672), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/226 (60%), Positives = 166/226 (73%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEIIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLNGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP N++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTNDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLG+KVKIM + Q + GP LPD V I K+E V PA
Sbjct: 178 MRQGVLGVKVKIMKDPAQN-RFGPRA-LPDAVKIAEAKDEDEVVPA 221
>gi|300121261|emb|CBK21641.2| unnamed protein product [Blastocystis hominis]
gi|300176039|emb|CBK23350.2| unnamed protein product [Blastocystis hominis]
Length = 239
Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/225 (57%), Positives = 169/225 (75%), Gaps = 9/225 (4%)
Query: 1 MATQ-ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
M++Q ISKK + VADGVF+AEL+E+L REL+E GYSGV +R + ++TEIIIRA R Q ++
Sbjct: 1 MSSQRISKKHQCVADGVFYAELDELLNRELSEVGYSGVSIRKSTMKTEIIIRAPRPQEII 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
GE RRI ELT++VQKRF F EN+V LYAE+V R LCA QAE+L+Y+LL GL VRRA
Sbjct: 61 GENSRRINELTALVQKRFGFNENNVVLYAERVAERSLCAQTQAEALKYRLLAGLPVRRAA 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
Y V+R +E+GAKGCE VIVSGKLR QRA +MKFK+GYMI +G E++D A
Sbjct: 121 YAVIRSALEAGAKGCE--------VIVSGKLRQQRANAMKFKEGYMIKTGNACKEFVDEA 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVL++QG+LG+KV+IM D +G+ GP LPD++ +H KE+
Sbjct: 173 TRHVLVKQGMLGVKVRIMKPTDPEGRLGPKKALPDIIVVHEPKEQ 217
>gi|167394938|ref|XP_001741154.1| 40S ribosomal protein S3-3 [Entamoeba dispar SAW760]
gi|165894380|gb|EDR22402.1| 40S ribosomal protein S3-3, putative [Entamoeba dispar SAW760]
Length = 250
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 131/224 (58%), Positives = 164/224 (73%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ T IS+K KFVADGVF+AELNE+L REL+ DGYSGVEVR + +IIIRATRT N++G
Sbjct: 21 LKTNISRKHKFVADGVFYAELNELLQRELSADGYSGVEVRKNGSKFQIIIRATRTTNIIG 80
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRI ELT+++ RF FP++ +ELY EKV RGLC ++QAES++YK+ GL VRRA
Sbjct: 81 DKGRRIHELTNLLIARFGFPKDKIELYVEKVLARGLCPVSQAESIKYKIAEGLPVRRAVG 140
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V+R IMESGAKGCE V +SGKLR QRA+ M FK+GYMI SG ++ SAV
Sbjct: 141 SVMRLIMESGAKGCE--------VSISGKLRGQRAQGMVFKEGYMIKSGNATRQFYSSAV 192
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
R VLLR G++GIKV IML+ D GK GP +PD+V I K+E
Sbjct: 193 RCVLLRMGIIGIKVTIMLDTDPSGKNGPAARIPDVVEIKTPKDE 236
>gi|28189869|dbj|BAC56549.1| similar to ribosomal protein S3 [Bos taurus]
Length = 147
Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 135/155 (87%), Positives = 138/155 (89%), Gaps = 8/155 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGR
Sbjct: 1 ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGR 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLR
Sbjct: 61 RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 120
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMK 159
FIMESGAKGCE V+VSGKLR QRAKSMK
Sbjct: 121 FIMESGAKGCE--------VVVSGKLRGQRAKSMK 147
>gi|146420499|ref|XP_001486205.1| hypothetical protein PGUG_01877 [Meyerozyma guilliermondii ATCC
6260]
gi|146389620|gb|EDK37778.1| hypothetical protein PGUG_01877 [Meyerozyma guilliermondii ATCC
6260]
Length = 238
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 165/226 (73%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE++ RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIVIYAERIEERGLSAAVQAEALKSKLLNGLPMRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP N++ID A+RHVL
Sbjct: 126 FAMAAGAKGVE--------VVISGKLRAARAKSQKYSDGFMIHSGQPTNDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGI+VKIM + + GP LPD V I K+E V PA
Sbjct: 178 MRQGVLGIRVKIMKD-PATARVGPKA-LPDAVLISEAKDEDEVVPA 221
>gi|354546036|emb|CCE42765.1| hypothetical protein CPAR2_204080 [Candida parapsilosis]
Length = 247
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 167/228 (73%), Gaps = 10/228 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T +SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+
Sbjct: 5 TILSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQ 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRI ELTS++ KRFK + +YAE+V RGL A QAE+L+ KLL GL +RRA YGV
Sbjct: 65 GRRIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKTKLLNGLPIRRAAYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRF M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP N++ID A+RH
Sbjct: 125 LRFAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTNDFIDIAIRH 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
VL+RQGVLG+KVKIM + + + GP LPD V I K+E V PA
Sbjct: 177 VLMRQGVLGVKVKIMKD-PEANRFGPRA-LPDAVKIAEAKDEDEVIPA 222
>gi|167389197|ref|XP_001738857.1| 40S ribosomal protein S3-3 [Entamoeba dispar SAW760]
gi|165897685|gb|EDR24767.1| 40S ribosomal protein S3-3, putative [Entamoeba dispar SAW760]
Length = 244
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/224 (58%), Positives = 164/224 (73%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ T IS+K KFVADGVF+AELNE+L REL+ DGYSGVEVR + +IIIRATRT N++G
Sbjct: 15 LKTNISRKHKFVADGVFYAELNELLQRELSADGYSGVEVRKNGSKFQIIIRATRTTNIIG 74
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRI ELT+++ RF FP++ +ELY EKV RGLC ++QAES++YK+ GL VRRA
Sbjct: 75 DKGRRIHELTNLLIARFGFPKDKIELYVEKVLARGLCPVSQAESIKYKIAEGLPVRRAVG 134
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V+R IMESGAKGCE V +SGKLR QRA+ M FK+GYMI SG ++ SAV
Sbjct: 135 SVMRLIMESGAKGCE--------VSISGKLRGQRAQGMVFKEGYMIKSGNATRQFYSSAV 186
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
R VLLR G++GIKV IML+ D GK GP +PD+V I K+E
Sbjct: 187 RCVLLRMGIIGIKVTIMLDTDPSGKNGPAARIPDVVEIKTPKDE 230
>gi|344303916|gb|EGW34165.1| hypothetical protein SPAPADRAFT_49231 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/231 (58%), Positives = 165/231 (71%), Gaps = 10/231 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEIIVKASNTQAVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK V +YAE++ R L A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLITKRFKLSPEGVAIYAERIEERALSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP N++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTNDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSI 235
+RQGVLGIKVKIM + K GP LPD V I K+E + PA +
Sbjct: 178 MRQGVLGIKVKIMKD-PATNKFGPRA-LPDAVKIAEAKDEDEIIPAPTVKV 226
>gi|448526764|ref|XP_003869393.1| Rps3 ribosomal protein S3 [Candida orthopsilosis Co 90-125]
gi|380353746|emb|CCG23258.1| Rps3 ribosomal protein S3 [Candida orthopsilosis]
Length = 247
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/228 (59%), Positives = 166/228 (72%), Gaps = 10/228 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
T +SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+
Sbjct: 5 TILSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQ 64
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRI ELTS++ KRFK + +YAE+V RGL A QAE+L+ KLL GL +RRA YGV
Sbjct: 65 GRRIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLNGLPIRRAAYGV 124
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRF M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP N++ID A+RH
Sbjct: 125 LRFAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTNDFIDIAIRH 176
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
VL+RQGVLG+KVKIM + + GP LPD V I K+E V PA
Sbjct: 177 VLMRQGVLGVKVKIMKD-PAANRFGPRA-LPDAVKIAEAKDEDEVIPA 222
>gi|67467661|ref|XP_649921.1| 40S ribosomal protein S3 [Entamoeba histolytica HM-1:IMSS]
gi|67484576|ref|XP_657508.1| 40S ribosomal protein S3 [Entamoeba histolytica HM-1:IMSS]
gi|56466448|gb|EAL44535.1| 40S ribosomal protein S3, putative [Entamoeba histolytica
HM-1:IMSS]
gi|56474761|gb|EAL52118.1| 40S ribosomal protein S3, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449702147|gb|EMD42841.1| 40S ribosomal protein S3 [Entamoeba histolytica KU27]
gi|449710680|gb|EMD49710.1| 40S ribosomal protein S3 [Entamoeba histolytica KU27]
Length = 244
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 130/224 (58%), Positives = 164/224 (73%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ T IS+K KFVADGVF+AELNE+L REL+ DGYSGVEVR + +IIIRATRT N++G
Sbjct: 15 LKTNISRKHKFVADGVFYAELNELLQRELSADGYSGVEVRKNGSKFQIIIRATRTTNIIG 74
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRI ELT+++ RF FP++ +ELY EKV RGLC ++QAES++YK+ GL VRRA
Sbjct: 75 DKGRRIHELTNLLIARFGFPKDKIELYVEKVLARGLCPVSQAESIKYKIAEGLPVRRAVG 134
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V+R IM+SGAKGCE V +SGKLR QRA+ M FK+GYMI SG ++ SAV
Sbjct: 135 SVMRLIMDSGAKGCE--------VSISGKLRGQRAQGMVFKEGYMIKSGNATRQFYSSAV 186
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
R VLLR G++GIKV IML+ D GK GP +PD+V I K+E
Sbjct: 187 RCVLLRMGIIGIKVTIMLDTDPSGKNGPAARIPDVVEIKTPKDE 230
>gi|300176595|emb|CBK24260.2| unnamed protein product [Blastocystis hominis]
Length = 239
Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/221 (57%), Positives = 166/221 (75%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
++SKKR+ VADGVF+AEL+E+L RELAE GYSGV +R + ++TEIIIRA R Q ++GE
Sbjct: 5 RVSKKRQCVADGVFYAELDELLNRELAEVGYSGVSIRKSTMKTEIIIRAPRPQEIIGENS 64
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRI ELT++VQKRF F EN+V LYAE+V R LCA QAE+L+Y+LL GL VRRA V+
Sbjct: 65 RRINELTALVQKRFGFNENNVVLYAERVAERSLCAQTQAEALKYRLLAGLPVRRAATAVI 124
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
R +E+GAKGCE VIVSGKLR QRA +MKFK+GYMI +G E++D A RHV
Sbjct: 125 RSALEAGAKGCE--------VIVSGKLRQQRANAMKFKEGYMIKTGYACKEFVDEATRHV 176
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
L++QG+LG+KV+IM D +G+ GP LPD++ +H KE+
Sbjct: 177 LVKQGMLGVKVRIMKPTDPEGRLGPKKALPDIIVVHEPKEQ 217
>gi|448103770|ref|XP_004200121.1| Piso0_002691 [Millerozyma farinosa CBS 7064]
gi|359381543|emb|CCE82002.1| Piso0_002691 [Millerozyma farinosa CBS 7064]
Length = 235
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/226 (60%), Positives = 165/226 (73%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ TQ VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEIIVKASNTQGVLGERGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + V +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLICKRFKISQEGVVIYAERVEERGLSAAVQAEALKAKLLNGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPARDFIDLAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP LPD V I K+E + PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAASRVGPKA-LPDNVVISEAKDEDEIIPA 221
>gi|115389474|ref|XP_001212242.1| 40S ribosomal protein S3 [Aspergillus terreus NIH2624]
gi|114194638|gb|EAU36338.1| 40S ribosomal protein S3 [Aspergillus terreus NIH2624]
Length = 263
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/176 (75%), Positives = 142/176 (80%), Gaps = 8/176 (4%)
Query: 49 IIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYK 108
+IRAT TQ VLGE+GRRIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYK
Sbjct: 49 VIRATHTQEVLGEQGRRIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYK 108
Query: 109 LLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISS 168
LL GLAVRRACYGVLRFIMESGAKGCE V+VSGKLRA RAKSMKF DG+MI S
Sbjct: 109 LLNGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHS 160
Query: 169 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
GQP E+IDSA RHVLLRQGVLGIKVKIM D +GK GP LPD VTI KEE
Sbjct: 161 GQPAKEFIDSATRHVLLRQGVLGIKVKIMRGSDPEGKAGPQKTLPDSVTIIEPKEE 216
>gi|50427849|ref|XP_462537.1| 40S ribosomal protein S3 [Debaryomyces hansenii CBS767]
gi|49658207|emb|CAG91047.1| DEHA2G22770p [Debaryomyces hansenii CBS767]
Length = 239
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 166/226 (73%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPTKLEVIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + + +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLICKRFKISQEGIVIYAERVEERGLSAAVQAEALKSKLLNGLPLRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTKDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + K GP + LPD V I K++ + PA
Sbjct: 178 MRQGVLGIKVKIMKD-PATNKFGPKS-LPDAVKISEAKDDDEIIPA 221
>gi|126132980|ref|XP_001383015.1| 40S ribosomal protein S3 [Scheffersomyces stipitis CBS 6054]
gi|126094840|gb|ABN64986.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 242
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPTKLEVIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE+V RGL A QAE L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLLVKRFKLSPEGIVIYAERVEERGLSAAVQAEGLKAKLLSGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYSDGFMIHSGQPTKDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP + LPD V I K+E V PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAANRFGPKS-LPDAVKISEAKDEDEVIPA 221
>gi|149068845|gb|EDM18397.1| rCG40478, isoform CRA_g [Rattus norvegicus]
Length = 177
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 134/155 (86%), Positives = 137/155 (88%), Gaps = 8/155 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRA 155
GVLRFIMESGAKGCE V+VSGKLR QRA
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRA 147
>gi|6540574|gb|AAF16402.1| ribosomal protein RPS3 [Musca domestica]
Length = 165
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 141/170 (82%), Gaps = 8/170 (4%)
Query: 36 GVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
GVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F +ELYAEKV RG
Sbjct: 3 GVEVRVTPARTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFSFEPGRIELYAEKVATRG 62
Query: 96 LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRA 155
LCAIAQAESLRYKL GGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR QRA
Sbjct: 63 LCAIAQAESLRYKLTGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRA 114
Query: 156 KSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
KSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML +D K K
Sbjct: 115 KSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKIMLPYDPKNK 164
>gi|448100073|ref|XP_004199265.1| Piso0_002691 [Millerozyma farinosa CBS 7064]
gi|359380687|emb|CCE82928.1| Piso0_002691 [Millerozyma farinosa CBS 7064]
Length = 235
Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 165/226 (73%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ TQ VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEIIVKASNTQGVLGERGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+I ELTS++ KRFK + + +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 KIHELTSLICKRFKISQEGIVIYAERVEERGLSAAVQAEALKAKLLNGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPAKDFIDLAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP LPD V I K+E + PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAASRIGPKA-LPDNVVISEAKDEDEIIPA 221
>gi|241958636|ref|XP_002422037.1| 40S ribosomal protein S3 [Candida dubliniensis CD36]
gi|223645382|emb|CAX40038.1| ribosomal protein, small subunit, putative [Candida dubliniensis
CD36]
Length = 254
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP LPD V I K+E V PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAANRFGPKA-LPDAVKIAEAKDEDEVIPA 221
>gi|223942381|gb|ACN25274.1| unknown [Zea mays]
gi|413921203|gb|AFW61135.1| hypothetical protein ZEAMMB73_998294 [Zea mays]
Length = 148
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/135 (93%), Positives = 132/135 (97%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCE 135
GVLRF+MESGAKGCE
Sbjct: 121 GVLRFVMESGAKGCE 135
>gi|68490130|ref|XP_711114.1| likely cytosolic ribosomal protein S3 [Candida albicans SC5314]
gi|68490165|ref|XP_711097.1| likely cytosolic ribosomal protein S3 [Candida albicans SC5314]
gi|46432373|gb|EAK91858.1| likely cytosolic ribosomal protein S3 [Candida albicans SC5314]
gi|46432391|gb|EAK91875.1| likely cytosolic ribosomal protein S3 [Candida albicans SC5314]
gi|238879938|gb|EEQ43576.1| 40S ribosomal protein S3 [Candida albicans WO-1]
Length = 251
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + E+I++A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE+V RGL A QAE+L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP LPD V I K+E V PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAANRFGPRA-LPDAVKIAEAKDEDEVIPA 221
>gi|28189875|dbj|BAC56552.1| similar to S3 ribosomal protein [Bos taurus]
Length = 145
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/153 (86%), Positives = 136/153 (88%), Gaps = 8/153 (5%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
KKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRI
Sbjct: 1 KKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRI 60
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
RELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI
Sbjct: 61 RELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 120
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMK 159
MESGAKGCE V+VSGKLR QRAKSMK
Sbjct: 121 MESGAKGCE--------VVVSGKLRGQRAKSMK 145
>gi|255721609|ref|XP_002545739.1| 40S ribosomal protein S3 [Candida tropicalis MYA-3404]
gi|240136228|gb|EER35781.1| 40S ribosomal protein S3 [Candida tropicalis MYA-3404]
Length = 248
Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 163/226 (72%), Gaps = 10/226 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKK+K VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEIIVKASNTQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI ELTS++ KRFK + +YAE+V RGL A QAE L+ KLL GL +RRA YGVLR
Sbjct: 66 RIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEGLKAKLLNGLPIRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLRA RAKS K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMGAGAKGVE--------VVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
+RQGVLGIKVKIM + + GP LPD V I K+E V PA
Sbjct: 178 MRQGVLGIKVKIMKD-PAANRFGPKA-LPDAVKIAEAKDEDEVIPA 221
>gi|413917291|gb|AFW57223.1| hypothetical protein ZEAMMB73_370294 [Zea mays]
Length = 196
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 125/135 (92%), Positives = 132/135 (97%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCE 135
GVLR++MESGAKGCE
Sbjct: 121 GVLRYVMESGAKGCE 135
>gi|148684444|gb|EDL16391.1| ribosomal protein S3, isoform CRA_f [Mus musculus]
Length = 168
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/153 (86%), Positives = 135/153 (88%), Gaps = 8/153 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ 153
GVLRFIMESGAKGCE V+VSGKLR Q
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQ 145
>gi|330040462|ref|XP_003239924.1| 40S ribosomal protein S3 [Cryptomonas paramecium]
gi|327206850|gb|AEA39026.1| 40S ribosomal protein S3 [Cryptomonas paramecium]
Length = 210
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 163/214 (76%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S K+K VADGVFF+E+NE+L+REL E+GYSG+E++ + ++TE+I++ RT+ ++ G+
Sbjct: 2 LSGKKKIVADGVFFSEVNELLSRELREEGYSGMELKKSSIKTELILKTVRTKQMIISGGK 61
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRE+T +V+KRF ++++ +Y EKV NRGL + QAE LRYKLL G+ R+ACY VLR
Sbjct: 62 RIREITLLVKKRFGLEDSNLNIYVEKVINRGLVSSIQAEFLRYKLLKGITTRKACYSVLR 121
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGAKGC + +SGKLRAQRAKSMKF +GY+I SGQ V YI S+ RH +
Sbjct: 122 SIMESGAKGCL--------ITISGKLRAQRAKSMKFTEGYIIHSGQAVKNYISSSTRHCI 173
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
L+QGV+GIK+ IML WD GK+GP PLPD+VTI
Sbjct: 174 LKQGVIGIKISIMLPWDPYGKKGPVNPLPDMVTI 207
>gi|390988241|gb|AFM36762.1| ribosomal protein S3, partial [Agrotis ipsilon]
Length = 192
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 128/177 (72%), Positives = 142/177 (80%), Gaps = 9/177 (5%)
Query: 56 QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV 115
Q+VLGEKGRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAV
Sbjct: 6 QSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAV 65
Query: 116 RRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEY 175
RRACYGVLRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y
Sbjct: 66 RRACYGVLRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDY 117
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
+++A RHVLLRQGVLGIKVKIML WD++GK GP P PD + + P E V + P +
Sbjct: 118 VNTATRHVLLRQGVLGIKVKIMLPWDKQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 174
>gi|402586120|gb|EJW80058.1| 30S ribosomal protein S3 [Wuchereria bancrofti]
Length = 202
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 130/172 (75%), Positives = 140/172 (81%), Gaps = 8/172 (4%)
Query: 47 EIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLR 106
+III ATRTQ+VLGE+GRRIRELTSVVQKRF F + +VELYAEKV NRGLCA+AQ ESLR
Sbjct: 2 QIIILATRTQSVLGERGRRIRELTSVVQKRFGFADGTVELYAEKVTNRGLCAVAQCESLR 61
Query: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMI 166
YKL+GGLAVRRACYGVLRFIMES A+GCE VIVSGKLR QRAKSMKF DG MI
Sbjct: 62 YKLVGGLAVRRACYGVLRFIMESNAQGCE--------VIVSGKLRGQRAKSMKFVDGLMI 113
Query: 167 SSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
SGQPVN+YI AVRHV LRQGVLGIKVKIML D KG GP LPD + I
Sbjct: 114 HSGQPVNDYIQQAVRHVQLRQGVLGIKVKIMLPHDPKGNMGPRIALPDQIHI 165
>gi|238683661|gb|ACR54109.1| ribosomal protein S3 [Palaemonetes varians]
Length = 189
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/171 (74%), Positives = 139/171 (81%), Gaps = 8/171 (4%)
Query: 55 TQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLA 114
TQNVLGEKGRRIRELTS+VQ+RF F + +VELYAEKV RGLCAIAQAESLRYKL+GGLA
Sbjct: 1 TQNVLGEKGRRIRELTSLVQRRFGFADGTVELYAEKVAQRGLCAIAQAESLRYKLVGGLA 60
Query: 115 VRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNE 174
VRRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMK DG MI SG+P
Sbjct: 61 VRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKSTDGLMIHSGEPRRH 112
Query: 175 YIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
Y+D+AVRHV LRQGVLGIKVKIML WD GK GP TPLPD + I K+EV
Sbjct: 113 YVDTAVRHVHLRQGVLGIKVKIMLPWDPTGKNGPRTPLPDHINIVEPKDEV 163
>gi|440301734|gb|ELP94120.1| 40S ribosomal protein S3-1, putative [Entamoeba invadens IP1]
Length = 246
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 163/225 (72%), Gaps = 8/225 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ T IS+K KFVADGVF+AELNE+L REL DGYSGVE+R + +IIIRATR N++G
Sbjct: 15 LKTNISRKHKFVADGVFYAELNELLQRELCADGYSGVEIRKNANKFQIIIRATRASNIIG 74
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRIRELTS++ RF F +N +EL+ EKV +RGLC ++QAES++YK+ G+ VRRA
Sbjct: 75 DKGRRIRELTSLMISRFGFKKNCLELFVEKVASRGLCPVSQAESIKYKIAEGVPVRRAVG 134
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
V++ IMESGA GCE V++SGKLR QRA+ M FK+GY+I SG ++ SA+
Sbjct: 135 SVMKLIMESGALGCE--------VVISGKLRGQRAQHMIFKEGYLIKSGNATRQFYASAI 186
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
R VLLR G++GIKV IML D GK GP +PD++ I K+EV
Sbjct: 187 RCVLLRMGIIGIKVNIMLNTDPTGKTGPAARIPDVIEIKTPKDEV 231
>gi|398021515|ref|XP_003863920.1| 40S ribosomal protein S3, putative [Leishmania donovani]
gi|322502154|emb|CBZ37237.1| 40S ribosomal protein S3, putative [Leishmania donovani]
Length = 342
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 157/214 (73%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELAE+G+SGV VT +RTEI+I+AT+T+ VLG GR
Sbjct: 127 LSKKRMIIRDGVFYAELFEFLKRELAEEGFSGVSYHVTTLRTEIVIKATKTREVLGVNGR 186
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++LY E+V RGL A+AQ ESLR+KLL L VRRA G++R
Sbjct: 187 RIRELTACIQQRFNYKEGKLQLYVERVEVRGLSAMAQVESLRFKLLSNLQVRRAAMGIIR 246
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++DSA RH
Sbjct: 247 YVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKSFVDSACRHCY 298
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+R G +G+KVKIML D G+ GP+ PLPD++T+
Sbjct: 299 MRAGCIGVKVKIMLPGDSTGRNGPSEPLPDVITV 332
>gi|154343872|ref|XP_001567880.1| putative 40S ribosomal protein S3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065214|emb|CAM40641.1| putative 40S ribosomal protein S3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 219
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 157/214 (73%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELAE+G+SGV +T +RTEI+I+AT+T+ VLG GR
Sbjct: 4 LSKKRMIVRDGVFYAELFEFLKRELAEEGFSGVSYHITTLRTEIVIKATKTREVLGVNGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++LY E+V RGL A+AQ ESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACIQQRFNYKEGKLQLYVERVEVRGLSAMAQVESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++DSA RH
Sbjct: 124 YVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKSFVDSACRHCY 175
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+R G +G+KVKIML D G+ GP+ PLPD++T+
Sbjct: 176 MRAGCIGVKVKIMLPSDSTGRNGPSEPLPDVITV 209
>gi|281206799|gb|EFA80983.1| 40S ribosomal protein S3 [Polysphondylium pallidum PN500]
Length = 221
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/218 (63%), Positives = 160/218 (73%), Gaps = 11/218 (5%)
Query: 4 QISKKRK--FVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+I KK + FVADGVF AELNE+ TRE +D GYSGVE++ P TEIIIRA++TQ ++G
Sbjct: 7 KIEKKWRVVFVADGVFHAELNELFTREFNKDEGYSGVELKTGPASTEIIIRASKTQAIVG 66
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+ RRI EL S+VQKRF F E +V LYAEKV NRGLCAIAQA+SL+ KLL GL VRRACY
Sbjct: 67 QNARRIHELCSLVQKRFGFAEGTVTLYAEKVQNRGLCAIAQADSLKGKLLLGLPVRRACY 126
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
++ IM GAKGCE VIVSGKLRAQRAK+MKF DGYMI SGQP +D A
Sbjct: 127 AIVHQIMTKGAKGCE--------VIVSGKLRAQRAKAMKFTDGYMIKSGQPSQNMVDFAC 178
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
HVLLRQG LG+KV IML +D GK G TP PD+V I
Sbjct: 179 CHVLLRQGTLGVKVAIMLPYDPTGKNGVQTPQPDIVVI 216
>gi|154334600|ref|XP_001563547.1| putative 40S ribosomal protein S3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060568|emb|CAM42116.1| putative 40S ribosomal protein S3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 219
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 157/214 (73%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELAE+G+SGV +T +RTEI+I+AT+T+ VLG GR
Sbjct: 4 LSKKRMIVRDGVFYAELFEFLKRELAEEGFSGVSYHITTLRTEIVIKATKTREVLGVNGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++LY E+V RGL A+AQ ESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACIQQRFNYKEGKLQLYVERVEVRGLSAMAQVESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++DSA RH
Sbjct: 124 YVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKSFVDSACRHCY 175
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+R G +G+KVKIML D G+ GP+ PLPD++T+
Sbjct: 176 MRAGCIGVKVKIMLPGDSTGRNGPSEPLPDVITV 209
>gi|146082044|ref|XP_001464434.1| putative 40S ribosomal protein S3 [Leishmania infantum JPCM5]
gi|146097654|ref|XP_001468174.1| putative 40S ribosomal protein S3 [Leishmania infantum JPCM5]
gi|157866908|ref|XP_001682009.1| putative 40S ribosomal protein S3 [Leishmania major strain
Friedlin]
gi|157874873|ref|XP_001685848.1| putative 40S ribosomal protein S3 [Leishmania major strain
Friedlin]
gi|401418259|ref|XP_003873621.1| putative 40S ribosomal protein S3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|401427716|ref|XP_003878341.1| putative 40S ribosomal protein S3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68125460|emb|CAJ03321.1| putative 40S ribosomal protein S3 [Leishmania major strain
Friedlin]
gi|68128921|emb|CAJ06157.1| putative 40S ribosomal protein S3 [Leishmania major strain
Friedlin]
gi|134068526|emb|CAM66821.1| putative 40S ribosomal protein S3 [Leishmania infantum JPCM5]
gi|134072541|emb|CAM71255.1| putative 40S ribosomal protein S3 [Leishmania infantum JPCM5]
gi|322489852|emb|CBZ25113.1| putative 40S ribosomal protein S3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494589|emb|CBZ29891.1| putative 40S ribosomal protein S3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 219
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 157/214 (73%), Gaps = 8/214 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELAE+G+SGV VT +RTEI+I+AT+T+ VLG GR
Sbjct: 4 LSKKRMIIRDGVFYAELFEFLKRELAEEGFSGVSYHVTTLRTEIVIKATKTREVLGVNGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++LY E+V RGL A+AQ ESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACIQQRFNYKEGKLQLYVERVEVRGLSAMAQVESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++DSA RH
Sbjct: 124 YVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKSFVDSACRHCY 175
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+R G +G+KVKIML D G+ GP+ PLPD++T+
Sbjct: 176 MRAGCIGVKVKIMLPGDSTGRNGPSEPLPDVITV 209
>gi|116488040|gb|ABJ98602.1| 40S ribosomal protein S3 [Scophthalmus maximus]
Length = 147
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 130/151 (86%), Positives = 134/151 (88%), Gaps = 8/151 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGR
Sbjct: 5 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGR 64
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLR
Sbjct: 65 RIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRA 155
FIMESGAKGCE V+VSGKLR QRA
Sbjct: 125 FIMESGAKGCE--------VVVSGKLRGQRA 147
>gi|399949695|gb|AFP65353.1| 40S ribosomal protein S3 [Chroomonas mesostigmatica CCMP1168]
Length = 217
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 164/218 (75%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M + +S K+KF+ DGVFF+ELNE L +EL+E+GY+ VE+R TP++ EII++ T++ ++
Sbjct: 1 MKSILSIKKKFIIDGVFFSELNEFLCKELSEEGYANVEIRKTPLKIEIILKMTQSYTIMS 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KGRRI E++++++KRF F +N + L+ EK+ NRGL A +QAE LRYKL+ G+ R+ACY
Sbjct: 61 YKGRRIGEISAMIKKRFNFGDNFISLFVEKIINRGLSANSQAELLRYKLVKGIITRKACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+LR MESGAKGC L+S VSGK++ QRAK+MKF DGY+I SGQPV +Y++ A
Sbjct: 121 SILRSTMESGAKGC----LIS----VSGKIKGQRAKTMKFIDGYIIHSGQPVEDYVEKAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RH L+QG++G+K+ IML WD G GP PLPD+VT+
Sbjct: 173 RHCFLKQGMIGVKISIMLPWDPVGTIGPKKPLPDVVTV 210
>gi|344231772|gb|EGV63654.1| ribosomal protein S3 [Candida tenuis ATCC 10573]
gi|344231773|gb|EGV63655.1| hypothetical protein CANTEDRAFT_114699 [Candida tenuis ATCC 10573]
Length = 237
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 164/235 (69%), Gaps = 10/235 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK VADGVF+AELNE TRELAE GY+GVEVR TP + EII++A+ Q VLGE+GR
Sbjct: 6 LSKKRKLVADGVFYAELNEFFTRELAEHGYAGVEVRRTPTKLEIIVKASNPQGVLGEQGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+I ELTS++ KRFK + V +YAE+V RGL A QAE L+ KLL GL RRA YGVLR
Sbjct: 66 KIHELTSLICKRFKLAKEGVVIYAERVEIRGLSAAVQAEGLKAKLLSGLPFRRAAYGVLR 125
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
F M +GAKG E V++SGKLR RAK+ K+ DG+MI SGQP ++ID A+RHVL
Sbjct: 126 FAMNNGAKGVE--------VVISGKLRGARAKAQKYADGFMIHSGQPTKDFIDIAIRHVL 177
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPV 239
+RQGVLGI+VKIM + K GP LPD V + K++ V PA +PV
Sbjct: 178 MRQGVLGIRVKIMKD-PATNKFGPKA-LPDAVKVAEAKDDEEVIPAPTVKSYIPV 230
>gi|379072588|gb|AFC92926.1| ribosomal protein S3B, partial [Pipa carvalhoi]
gi|379072590|gb|AFC92927.1| ribosomal protein S3B, partial [Rhinophrynus dorsalis]
Length = 162
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/169 (76%), Positives = 135/169 (79%), Gaps = 10/169 (5%)
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRF
Sbjct: 1 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 60
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLL
Sbjct: 61 IMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLL 112
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 113 RQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 159
>gi|154284746|ref|XP_001543168.1| 40S ribosomal protein S3 [Ajellomyces capsulatus NAm1]
gi|150406809|gb|EDN02350.1| hypothetical protein HCAG_00214 [Ajellomyces capsulatus NAm1]
Length = 239
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/156 (80%), Positives = 134/156 (85%), Gaps = 8/156 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISK+RKFVADGVF+AELNE RELAE+GYSGVEVRVTP T+IIIRAT TQ VLGE+GR
Sbjct: 8 ISKRRKFVADGVFYAELNEFFQRELAEEGYSGVEVRVTPTVTDIIIRATHTQEVLGEQGR 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLR
Sbjct: 68 RIRELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLR 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKF 160
FIMESGAKGCE V+VSGKLRA RAKSMKF
Sbjct: 128 FIMESGAKGCE--------VVVSGKLRAARAKSMKF 155
>gi|71408264|ref|XP_806547.1| 40S ribosomal protein S3 [Trypanosoma cruzi strain CL Brener]
gi|71653987|ref|XP_815622.1| 40S ribosomal protein S3 [Trypanosoma cruzi strain CL Brener]
gi|71656239|ref|XP_816670.1| 40S ribosomal protein S3 [Trypanosoma cruzi strain CL Brener]
gi|70870324|gb|EAN84696.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|70880689|gb|EAN93771.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|70881813|gb|EAN94819.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|407844360|gb|EKG01918.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|407849237|gb|EKG04048.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|407867308|gb|EKG08545.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
Length = 214
Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 157/219 (71%), Gaps = 11/219 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELA+DG++GVE RVT RTEI+IRAT+T+ VLGEKGR
Sbjct: 4 LSKKRMIIRDGVFYAELFEFLKRELADDGFAGVEHRVTSTRTEIVIRATKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFHYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++D A RH
Sbjct: 124 HVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKNFVDVATRHCH 175
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LR G LG+KVKIML K Q LPD++T+ KE
Sbjct: 176 LRAGTLGVKVKIML---PKSMQNEEEILPDVITVLEPKE 211
>gi|71406574|ref|XP_805815.1| 40S ribosomal protein S3 [Trypanosoma cruzi strain CL Brener]
gi|70869366|gb|EAN83964.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi]
gi|407405323|gb|EKF30377.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi marinkellei]
Length = 214
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 157/219 (71%), Gaps = 11/219 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELA+DG++GVE RVT RTEI+IRAT+T+ VLGEKGR
Sbjct: 4 LSKKRMIIRDGVFYAELFEFLKRELADDGFAGVEHRVTSTRTEIVIRATKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFHYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++D A RH
Sbjct: 124 HVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKNFVDVATRHCH 175
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LR G LG+KVKIML K Q LPD++T+ KE
Sbjct: 176 LRAGTLGVKVKIML---PKSMQDEEEILPDVITVLEPKE 211
>gi|407409823|gb|EKF32505.1| 40S ribosomal protein S3, putative [Trypanosoma cruzi marinkellei]
Length = 253
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 157/219 (71%), Gaps = 11/219 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELA+DG++GVE RVT RTEI+IRAT+T+ VLGEKGR
Sbjct: 43 LSKKRMIIRDGVFYAELFEFLKRELADDGFAGVEHRVTSTRTEIVIRATKTREVLGEKGR 102
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 103 RIRELTACLQQRFHYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 162
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++D A RH
Sbjct: 163 HVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKNFVDVATRHCH 214
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
LR G LG+KVKIML K Q LPD++T+ KE
Sbjct: 215 LRAGTLGVKVKIMLP---KSMQDEEEILPDVITVLEPKE 250
>gi|340056073|emb|CCC50402.1| putative 40S ribosomal protein S3 [Trypanosoma vivax Y486]
gi|340057730|emb|CCC52077.1| putative 40S ribosomal protein S3 [Trypanosoma vivax Y486]
Length = 214
Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 156/219 (71%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKR V DG+F+AEL E L RELA+DG++GVE RVTP RTEI+IRAT+T+ VLGEK R
Sbjct: 4 ISKKRMMVRDGIFYAELFEFLKRELADDGFAGVEHRVTPQRTEIVIRATKTREVLGEKNR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E V+LYAE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACIQQRFNYKEGKVQLYAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+MESGAKGCE V V GK++ QRAKSM F+DGYMI SG ++ +A RH
Sbjct: 124 LVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVSTATRHCH 175
Query: 185 LRQGVLGIKVKIML-----EWDQKGKQGPTTPLPDLVTI 218
LR G +G+KVKIML E D+ LPD+VT+
Sbjct: 176 LRAGTIGVKVKIMLPNSMVEEDE--------VLPDVVTV 206
>gi|90076128|dbj|BAE87744.1| unnamed protein product [Macaca fascicularis]
gi|90076700|dbj|BAE88030.1| unnamed protein product [Macaca fascicularis]
Length = 147
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/133 (91%), Positives = 124/133 (93%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKG 133
GVLRFIMESGAKG
Sbjct: 121 GVLRFIMESGAKG 133
>gi|342184715|emb|CCC94197.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 214
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELA DG++GVE RVTP+RTEI+IRAT+T+ VLGEKGR
Sbjct: 4 LSKKRMMVRDGVFYAELFEFLKRELAVDGFAGVEHRVTPMRTEIVIRATKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+ E+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFNYKEGKLQLFVERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V + GK++ QRAKSM F+DGYMI SG ++D+A+RH
Sbjct: 124 YVMESGAKGCE--------VTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDAAIRHCH 175
Query: 185 LRQGVLGIKVKI-----MLEWDQKGKQGPTTPLPDLVTI 218
LR G +G+KVKI MLE ++ LPD+VT+
Sbjct: 176 LRAGTIGVKVKIMRPTSMLEEEE--------VLPDVVTV 206
>gi|342183330|emb|CCC92810.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 214
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 159/219 (72%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELA DG++GVE RVTP+RTEI+IRAT+T+ VLGEKGR
Sbjct: 4 LSKKRMMVRDGVFYAELFEFLKRELAVDGFAGVEHRVTPMRTEIVIRATKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+ E+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFNYKEGKLQLFVERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V + GK++ QRAKSM F+DGYMI SG ++D+A+RH
Sbjct: 124 YVMESGAKGCE--------VTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDAAIRHCH 175
Query: 185 LRQGVLGIKVKI-----MLEWDQKGKQGPTTPLPDLVTI 218
LR G +G+KVKI MLE ++ LPD+VT+
Sbjct: 176 LRAGTIGVKVKIMRPTSMLEEEE--------VLPDVVTV 206
>gi|71748612|ref|XP_823361.1| 40S ribosomal protein S3 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|449802224|pdb|3ZEY|X Chain X, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
gi|70833029|gb|EAN78533.1| 40S ribosomal protein S3, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261333299|emb|CBH16294.1| 40S ribosomal protein S3, putative [Trypanosoma brucei gambiense
DAL972]
Length = 214
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 158/219 (72%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELA+DG++GVE RVTP RTEI+IR+T+T+ VLGEKGR
Sbjct: 4 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V + GK++ QRAKSM F+DGYMI SG ++D+A RH
Sbjct: 124 YVMESGAKGCE--------VTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCH 175
Query: 185 LRQGVLGIKVKI-----MLEWDQKGKQGPTTPLPDLVTI 218
LR G +G+ VKI M+E D+ LPD++T+
Sbjct: 176 LRAGTIGVNVKIMRPQSMIEEDE--------VLPDVITV 206
>gi|294939314|ref|XP_002782408.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239894014|gb|EER14203.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 244
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 9/186 (4%)
Query: 56 QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV 115
+ VLGEKGRRIRELT++V++RF FPENSVEL+AE+V+NR LCA AQAESLRYKLLGGL V
Sbjct: 46 RKVLGEKGRRIRELTALVERRFDFPENSVELFAERVDNRALCAQAQAESLRYKLLGGLPV 105
Query: 116 RRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEY 175
RRA YGVLRF+ME+GAKG E V VSGKLRAQRAK MKF DGY++S+G P Y
Sbjct: 106 RRAAYGVLRFVMENGAKGVE--------VTVSGKLRAQRAKVMKFADGYLLSTGTPKEMY 157
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATS 234
+D A+R+V +RQG+LGI+VKIM+ +D +GK GP T LPD +TIH KE+ V+ AT T
Sbjct: 158 VDQAIRNVDMRQGILGIRVKIMMAYDPEGKSGPKTRLPDDITIHEPKEDTVFPIEATTTE 217
Query: 235 IELPVA 240
E PVA
Sbjct: 218 EEAPVA 223
>gi|261331251|emb|CBH14241.1| 40S ribosomal protein S3, putative [Trypanosoma brucei gambiense
DAL972]
Length = 266
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 158/219 (72%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELA+DG++GVE RVTP RTEI+IR+T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V + GK++ QRAKSM F+DGYMI SG ++D+A RH
Sbjct: 176 YVMESGAKGCE--------VTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCH 227
Query: 185 LRQGVLGIKVKI-----MLEWDQKGKQGPTTPLPDLVTI 218
LR G +G+ VKI M+E D+ LPD++T+
Sbjct: 228 LRAGTIGVNVKIMRPQSMIEEDE--------VLPDVITV 258
>gi|71744718|ref|XP_826989.1| 40S ribosomal protein S3 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831154|gb|EAN76659.1| 40S ribosomal protein S3, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 266
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/219 (55%), Positives = 158/219 (72%), Gaps = 21/219 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR V DGVF+AEL E L RELA+DG++GVE RVTP RTEI+IR+T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 116 RIRELTACLQQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 175
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
++MESGAKGCE V + GK++ QRAKSM F+DGYMI SG ++D+A RH
Sbjct: 176 YVMESGAKGCE--------VTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCH 227
Query: 185 LRQGVLGIKVKI-----MLEWDQKGKQGPTTPLPDLVTI 218
LR G +G+ VKI M+E D+ LPD++T+
Sbjct: 228 LRAGTIGVNVKIMRPQSMIEEDE--------VLPDVITV 258
>gi|183398092|gb|ACC62506.1| ribosomal protein S3 (predicted) [Rhinolophus ferrumequinum]
Length = 163
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 134/165 (81%), Gaps = 8/165 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK KFV DG+F A+ E LTRELAEDGYSGVEVR+T RTEIII ATRTQNVLG
Sbjct: 1 MATQISKKWKFVVDGIFKAQWYEFLTRELAEDGYSGVEVRLTLTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG+ IRELT+VVQKRF FPE+SVELYAEKV R LCAI QAESL +KLLGGLAVRR CY
Sbjct: 61 EKGQSIRELTAVVQKRFGFPESSVELYAEKVATRSLCAIGQAESLHHKLLGGLAVRRTCY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYM 165
GVL+FIMESGAKG E V VSGKLR QRAKSM F DG M
Sbjct: 121 GVLQFIMESGAKGGE--------VGVSGKLRGQRAKSMMFVDGLM 157
>gi|226482822|emb|CAX79378.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 202
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/188 (65%), Positives = 145/188 (77%), Gaps = 8/188 (4%)
Query: 38 EVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLC 97
+VR + TE+II AT+TQ+VLGE RRIRELTSV+QKRF FP+ ++ L+AEK+ RGL
Sbjct: 12 KVRESRKYTEVIILATKTQSVLGEGSRRIRELTSVLQKRFGFPDGTLGLFAEKMTFRGLS 71
Query: 98 AIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKS 157
AIAQAESLRYKL GL VR+ACYG+LRFIMESGA+G E VIVSGK++ QRAK+
Sbjct: 72 AIAQAESLRYKLTYGLPVRKACYGILRFIMESGARGAE--------VIVSGKIKGQRAKA 123
Query: 158 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
MKF DG MI SG PVN Y+D AVRHV L QG+LGIKVKIM++ D GK+GP PLPD VT
Sbjct: 124 MKFCDGLMIHSGDPVNYYVDKAVRHVQLPQGILGIKVKIMMDHDSSGKKGPRKPLPDTVT 183
Query: 218 IHPLKEEV 225
I KEEV
Sbjct: 184 ILAAKEEV 191
>gi|162605846|ref|XP_001713438.1| 40S ribosomal protein S3 [Guillardia theta]
gi|13794370|gb|AAK39747.1|AF083031_104 40S ribosomal protein S3 [Guillardia theta]
Length = 218
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/218 (54%), Positives = 162/218 (74%), Gaps = 8/218 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ ++S K+KFVADGV ++E+NE L REL E+G+SG++++ + EIII++++ ++G
Sbjct: 2 LGYRLSLKKKFVADGVVYSEINEFLERELKENGFSGIKIKKKIEKVEIIIKSSKAHTIIG 61
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KG+RIREL +++KRF F EN + LY EK+NNR LC I QAESLRYK+L G +R+ACY
Sbjct: 62 FKGKRIRELNVLLKKRFNFGENKLVLYVEKINNRNLCPINQAESLRYKILRGFVLRKACY 121
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+LR +E+GAKGC ++S VSGKLRAQRAK+MKF DGY+I SG+P EY SA+
Sbjct: 122 SILRSTIEAGAKGC----IIS----VSGKLRAQRAKTMKFMDGYIIHSGKPSEEYTKSAI 173
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
RH LL QGV+GIK+ IML WD G GP PLPD++T+
Sbjct: 174 RHCLLPQGVIGIKISIMLPWDPCGLIGPKKPLPDVITL 211
>gi|229594319|ref|XP_001030083.3| KH domain containing protein [Tetrahymena thermophila]
gi|319443358|pdb|2XZM|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
gi|319443393|pdb|2XZN|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
gi|225566935|gb|EAR82420.3| KH domain containing protein [Tetrahymena thermophila SB210]
gi|315570297|tpg|DAA33967.1| TPA_exp: 40S ribosomal protein rpS3e [Tetrahymena thermophila]
Length = 243
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 160/221 (72%), Gaps = 10/221 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
I+KK+KFVADGVF AEL+ ++ L + GY+G+EVR TP +TEI I+AT+ Q V+G +G+
Sbjct: 8 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 67
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+ +ELT +QKRF + ++ ++++AE + +GLCA AQ E++ YKLL + VR A +++
Sbjct: 68 KHKELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIK 127
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+++ GAKGCE +I+SGKL+ QRAK+MKFK GYMI +GQP N+YID AVRHV
Sbjct: 128 SVIQDGAKGCE--------IIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVF 179
Query: 185 LRQGVLGIKVKIMLEWDQK--GKQGPTTPLPDLVTIHPLKE 223
+QG++G+KVKIML ++ K G TP+PD V IHP K+
Sbjct: 180 FKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQ 220
>gi|340505471|gb|EGR31795.1| hypothetical protein IMG5_102040 [Ichthyophthirius multifiliis]
Length = 676
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 159/221 (71%), Gaps = 8/221 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QI+KK+KFVADGVF AEL+ ++ L + GY+G+EVR TP++ EI I+AT+ Q+V+G +G
Sbjct: 7 QINKKKKFVADGVFNAELHCFFSKSLQDAGYAGIEVRRTPMKIEIRIKATKPQHVIGLEG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
++ +ELT +QKRF + + +++ AE V N+GLCA AQ E+L YKLL + VR A ++
Sbjct: 67 KKHKELTYFLQKRFGYANDQLQILAEPVKNKGLCASAQVEALNYKLLKDVPVRLAANYII 126
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
R ++ GAKGCE VI+SGKL+ QRAK+MKFK GYMI +GQP +Y+D AVRHV
Sbjct: 127 RQVINDGAKGCE--------VIISGKLQQQRAKTMKFKQGYMICTGQPRKDYVDVAVRHV 178
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
+QG++G+KVKIML +D GK G TP+PD V I+ K +
Sbjct: 179 FFKQGIMGVKVKIMLPYDPTGKFGVRTPIPDNVVINEPKRD 219
>gi|326901602|gb|AEA10079.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
Length = 194
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/157 (74%), Positives = 124/157 (78%), Gaps = 8/157 (5%)
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLRFIM
Sbjct: 1 ELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLRFIM 60
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVLLRQ
Sbjct: 61 ESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVLLRQ 112
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
GVLGIKVKIM D GK GP LPD VTI KEE
Sbjct: 113 GVLGIKVKIMRGSDPDGKAGPQKTLPDAVTIIESKEE 149
>gi|224121646|ref|XP_002318635.1| predicted protein [Populus trichocarpa]
gi|222859308|gb|EEE96855.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/125 (93%), Positives = 119/125 (95%), Gaps = 2/125 (1%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR Y
Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR--Y 118
Query: 121 GVLRF 125
V F
Sbjct: 119 HVFEF 123
>gi|326901586|gb|AEA10071.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901588|gb|AEA10072.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901590|gb|AEA10073.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901592|gb|AEA10074.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901594|gb|AEA10075.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901596|gb|AEA10076.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901598|gb|AEA10077.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901600|gb|AEA10078.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901604|gb|AEA10080.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901606|gb|AEA10081.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901608|gb|AEA10082.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901610|gb|AEA10083.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901612|gb|AEA10084.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901614|gb|AEA10085.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901616|gb|AEA10086.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901618|gb|AEA10087.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901620|gb|AEA10088.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901622|gb|AEA10089.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901624|gb|AEA10090.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901626|gb|AEA10091.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901628|gb|AEA10092.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901630|gb|AEA10093.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901632|gb|AEA10094.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901634|gb|AEA10095.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901636|gb|AEA10096.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901638|gb|AEA10097.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901640|gb|AEA10098.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901642|gb|AEA10099.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901644|gb|AEA10100.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901646|gb|AEA10101.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901648|gb|AEA10102.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901650|gb|AEA10103.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901652|gb|AEA10104.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901654|gb|AEA10105.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901656|gb|AEA10106.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901658|gb|AEA10107.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901660|gb|AEA10108.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901662|gb|AEA10109.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901664|gb|AEA10110.1| 40S ribosomal protein S3 [Grosmannia sp. SMA-2010]
gi|326901666|gb|AEA10111.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901668|gb|AEA10112.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901670|gb|AEA10113.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901672|gb|AEA10114.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901674|gb|AEA10115.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901676|gb|AEA10116.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901678|gb|AEA10117.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901680|gb|AEA10118.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901682|gb|AEA10119.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901684|gb|AEA10120.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901686|gb|AEA10121.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901688|gb|AEA10122.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901690|gb|AEA10123.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901692|gb|AEA10124.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901694|gb|AEA10125.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901696|gb|AEA10126.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901698|gb|AEA10127.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901700|gb|AEA10128.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901702|gb|AEA10129.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901704|gb|AEA10130.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901706|gb|AEA10131.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901708|gb|AEA10132.1| 40S ribosomal protein S3 [Grosmannia clavigera]
gi|326901710|gb|AEA10133.1| 40S ribosomal protein S3 [Leptographium terebrantis]
gi|326901712|gb|AEA10134.1| 40S ribosomal protein S3 [Leptographium terebrantis]
gi|326901714|gb|AEA10135.1| 40S ribosomal protein S3 [Leptographium terebrantis]
gi|326901716|gb|AEA10136.1| 40S ribosomal protein S3 [Leptographium longiclavatum]
gi|326901718|gb|AEA10137.1| 40S ribosomal protein S3 [Leptographium longiclavatum]
gi|326901720|gb|AEA10138.1| 40S ribosomal protein S3 [Leptographium wingfieldii]
gi|326901722|gb|AEA10139.1| 40S ribosomal protein S3 [Leptographium wingfieldii]
gi|326901724|gb|AEA10140.1| 40S ribosomal protein S3 [Grosmannia aurea]
Length = 194
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/157 (74%), Positives = 124/157 (78%), Gaps = 8/157 (5%)
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELTS++QKRFKFPENSV LYA KV NRGL A+AQ ESLRYKLL GLAVRRACYGVLRFIM
Sbjct: 1 ELTSLIQKRFKFPENSVSLYAAKVQNRGLSAVAQCESLRYKLLNGLAVRRACYGVLRFIM 60
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP ++IDSA RHVLLRQ
Sbjct: 61 ESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPAKDFIDSATRHVLLRQ 112
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
GVLGIKVKIM D GK GP LPD VTI KEE
Sbjct: 113 GVLGIKVKIMRGSDPDGKAGPQKTLPDAVTIIEPKEE 149
>gi|444731980|gb|ELW72307.1| Calcium-binding protein 39-like protein [Tupaia chinensis]
Length = 518
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/212 (59%), Positives = 147/212 (69%), Gaps = 13/212 (6%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
+ K+KF ADG+F AELNE TRELAED SG+EVRVTP RTEII+ ATRTQNVLGEKG R
Sbjct: 109 TSKKKFDADGIFKAELNEFRTRELAEDRCSGLEVRVTPTRTEIIVLATRTQNVLGEKGPR 168
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR----ACYG 121
I+E T+V+ KR FPE SVELYAEKV RGLCAIAQAESLRY+LL GLA RR AC
Sbjct: 169 IQESTAVIPKRSGFPEGSVELYAEKVATRGLCAIAQAESLRYRLLEGLAGRRPATCACCA 228
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VL F +SGA GCE +VS K R QRAK+++F DG +I SG VN Y+D+ VR
Sbjct: 229 VLWFFTDSGATGCE--------AVVSQKRRGQRAKALRFVDGLVIDSGDRVNYYVDTNVR 280
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
HVLLR+ G + + WD + TP P
Sbjct: 281 HVLLRRCA-GHQGEDRAAWDPSVRLALRTPCP 311
>gi|148684439|gb|EDL16386.1| ribosomal protein S3, isoform CRA_a [Mus musculus]
Length = 135
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/135 (83%), Positives = 117/135 (86%), Gaps = 8/135 (5%)
Query: 54 RTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL 113
RTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGL
Sbjct: 8 RTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGL 67
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
AVRRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN
Sbjct: 68 AVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVN 119
Query: 174 EYIDSAVRHVLLRQG 188
Y+D+AVRHVLLRQG
Sbjct: 120 YYVDTAVRHVLLRQG 134
>gi|379072592|gb|AFC92928.1| ribosomal protein S3B, partial [Hymenochirus curtipes]
Length = 152
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 125/169 (73%), Gaps = 20/169 (11%)
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELT+VVQKRF FPE SVELYAEKV RGLCAIAQA LAVRRACYGVLRF
Sbjct: 1 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQA----------LAVRRACYGVLRF 50
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE V+VSGKLR QRAK+MKF DG MI SG PVN Y+D+AVRHVLL
Sbjct: 51 IMESGAKGCE--------VVVSGKLRGQRAKAMKFVDGLMIHSGDPVNYYVDTAVRHVLL 102
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 103 RQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPIS 149
>gi|226508400|ref|NP_001142180.1| uncharacterized protein LOC100274348 [Zea mays]
gi|194707500|gb|ACF87834.1| unknown [Zea mays]
gi|413921204|gb|AFW61136.1| hypothetical protein ZEAMMB73_998294 [Zea mays]
Length = 133
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/124 (89%), Positives = 118/124 (95%), Gaps = 2/124 (1%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRR Y
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRR--Y 118
Query: 121 GVLR 124
++R
Sbjct: 119 NLIR 122
>gi|223947579|gb|ACN27873.1| unknown [Zea mays]
gi|413917292|gb|AFW57224.1| hypothetical protein ZEAMMB73_370294 [Zea mays]
Length = 127
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 114/117 (97%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
EKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRR 117
>gi|41057930|gb|AAR98922.1| ribosomal protein S3, partial [Ostrinia nubilalis]
gi|441415027|dbj|BAM74497.1| ribosomal protein S3, partial [Ostrinia scapulalis]
Length = 125
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/132 (84%), Positives = 116/132 (87%), Gaps = 8/132 (6%)
Query: 29 LAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88
LAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRF PE SVELYA
Sbjct: 1 LAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 60
Query: 89 EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSG 148
EKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCE V+VSG
Sbjct: 61 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE--------VVVSG 112
Query: 149 KLRAQRAKSMKF 160
KLR QRAKSMKF
Sbjct: 113 KLRGQRAKSMKF 124
>gi|441645490|ref|XP_003254540.2| PREDICTED: 40S ribosomal protein S3 [Nomascus leucogenys]
Length = 181
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/156 (71%), Positives = 121/156 (77%), Gaps = 10/156 (6%)
Query: 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
+P ++LYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE
Sbjct: 17 YPLLPLKLYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE--- 73
Query: 139 LVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML
Sbjct: 74 -----VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 128
Query: 199 EWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
WD GK GP PLPD V+I K+E+ P T S
Sbjct: 129 PWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 162
>gi|393905485|gb|EJD73988.1| 40S ribosomal protein S3, variant [Loa loa]
Length = 183
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/132 (80%), Positives = 116/132 (87%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRK V DG+F AELN L +ELAEDGYSGVEVR TP R EIII ATRTQ+VLGE+G
Sbjct: 7 QMSKKRKAVQDGIFKAELNNFLMKELAEDGYSGVEVRRTPARAEIIILATRTQSVLGERG 66
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
RRIRELTSVVQKRF F + +VELYAEKV NRGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 67 RRIRELTSVVQKRFGFADGTVELYAEKVTNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 126
Query: 124 RFIMESGAKGCE 135
RFIMES A+GCE
Sbjct: 127 RFIMESNAQGCE 138
>gi|159145672|gb|ABW90373.1| putative ribosomal protein S3 [Sipunculus nudus]
Length = 126
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/126 (84%), Positives = 113/126 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQ+SKKRKFVADG+F AELNE TRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MATQVSKKRKFVADGLFKAELNEFFTRELAEDGYSGVEVRVTPTRTEIIILATRTQQVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KGRRIRELTSVVQKRF FPE +VELY +KV NRGLCAI Q ESLRYKL+GGLAV RACY
Sbjct: 61 DKGRRIRELTSVVQKRFNFPEGTVELYVQKVANRGLCAITQCESLRYKLIGGLAVTRACY 120
Query: 121 GVLRFI 126
GVLRFI
Sbjct: 121 GVLRFI 126
>gi|3642663|gb|AAC36521.1| ribosomal protein S3, partial [Mus musculus]
Length = 123
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/131 (83%), Positives = 113/131 (86%), Gaps = 8/131 (6%)
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRF
Sbjct: 1 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 60
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLL
Sbjct: 61 IMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLL 112
Query: 186 RQGVLGIKVKI 196
RQGVLGIKVKI
Sbjct: 113 RQGVLGIKVKI 123
>gi|9022435|gb|AAF82383.1|AF281313_1 ribosomal protein S3 [Homo sapiens]
Length = 158
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/149 (74%), Positives = 117/149 (78%), Gaps = 10/149 (6%)
Query: 86 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVI 145
LYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE V+
Sbjct: 1 LYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE--------VV 52
Query: 146 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD GK
Sbjct: 53 VSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGK 112
Query: 206 QGPTTPLPDLVTIHPLKEEVYVAPATATS 234
GP PLPD V+I K+E+ P T S
Sbjct: 113 IGPKKPLPDHVSIVEPKDEIL--PTTPIS 139
>gi|291238325|ref|XP_002739080.1| PREDICTED: ribosomal protein S3-like [Saccoglossus kowalevskii]
Length = 250
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 118/149 (79%), Gaps = 10/149 (6%)
Query: 86 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVI 145
LYAEKV RGLCAIAQ ESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE V+
Sbjct: 71 LYAEKVAARGLCAIAQCESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE--------VV 122
Query: 146 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
VSGKLR QRAKSMKF DG MI SG PVN+Y+D+AVRHV+LRQGVLGIKVKIML WD GK
Sbjct: 123 VSGKLRGQRAKSMKFVDGLMIHSGNPVNDYVDTAVRHVMLRQGVLGIKVKIMLPWDPTGK 182
Query: 206 QGPTTPLPDLVTIHPLKEEVYVAPATATS 234
GP PLPD V+I K++ V P+T S
Sbjct: 183 IGPKKPLPDHVSIVEPKDD--VVPSTPIS 209
>gi|123444699|ref|XP_001311117.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|123456864|ref|XP_001316164.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|123476890|ref|XP_001321615.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|123483338|ref|XP_001324008.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|154413076|ref|XP_001579569.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|154415577|ref|XP_001580813.1| ribosomal protein S3 [Trichomonas vaginalis G3]
gi|121892915|gb|EAX98187.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
gi|121898863|gb|EAY03941.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
gi|121904445|gb|EAY09392.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
gi|121906883|gb|EAY11785.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
gi|121913777|gb|EAY18583.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
gi|121915034|gb|EAY19827.1| ribosomal protein S3, putative [Trichomonas vaginalis G3]
Length = 216
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 150/222 (67%), Gaps = 8/222 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A + +K R+ + G+F+AELNE+LTREL ++GY G EVR TP RTEIII+A T+ +
Sbjct: 3 AQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDN 62
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
GRR++E+ ++QKR++ E+S+E++ +++ +GL A+ Q ESLRYKL+ + RRA Y
Sbjct: 63 HGRRLQEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYS 122
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
++RF+M++GA+GCE V +SGKLR RA + K+K+GYM+ SG +++ AV
Sbjct: 123 IIRFVMDAGARGCE--------VAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVG 174
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
H+ ++Q +GI+V IML D G GP PD++ +H K+
Sbjct: 175 HIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>gi|351707112|gb|EHB10031.1| 40S ribosomal protein S3 [Heterocephalus glaber]
Length = 127
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/133 (81%), Positives = 112/133 (84%), Gaps = 8/133 (6%)
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
IRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAV RACYGVL F
Sbjct: 2 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVLRACYGVLWF 61
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
IMESGAKGCE V VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLL
Sbjct: 62 IMESGAKGCE--------VFVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLL 113
Query: 186 RQGVLGIKVKIML 198
RQGVLGIKVKIML
Sbjct: 114 RQGVLGIKVKIML 126
>gi|145536261|ref|XP_001453858.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421591|emb|CAK86461.1| unnamed protein product [Paramecium tetraurelia]
Length = 230
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 148/215 (68%), Gaps = 8/215 (3%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A Q++KK+KFVADGVF AEL+ L+R L + GY+G VR TPV+T+I I+A T V G
Sbjct: 4 ARQMNKKKKFVADGVFQAELHSFLSRALTDAGYAGFVVRTTPVQTDIEIKAANTAGVTGP 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+GR++RELTS++QKRF + + +++L +V ++GLCA AQAESL+ KLL + VR A
Sbjct: 64 EGRKLRELTSLIQKRFGYAKEALQLIVARVQSKGLCAPAQAESLKTKLLAQVPVRTAANA 123
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VL+ IM GA G E I+SGKL QRAKSMK++ GY+IS+GQP + ID AVR
Sbjct: 124 VLKQIMADGAIGAE--------CIISGKLGQQRAKSMKYRAGYIISTGQPKKDLIDVAVR 175
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLV 216
H +QG++G+KVKI +D GK+G +PD V
Sbjct: 176 HCFFKQGIIGVKVKIYRPYDPSGKKGIPIEVPDKV 210
>gi|145541820|ref|XP_001456598.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424410|emb|CAK89201.1| unnamed protein product [Paramecium tetraurelia]
Length = 230
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 147/213 (69%), Gaps = 8/213 (3%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q++KK+KFVADGVF AEL+ L+R L + GY+G VR TPV+T+I I+A T V G +G
Sbjct: 6 QMNKKKKFVADGVFQAELHSFLSRALTDAGYAGFVVRTTPVQTDIEIKAANTAGVTGPEG 65
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
R++RELTS++QKRF + + +++L +V ++GLCA AQAESL+ KLL + VR A VL
Sbjct: 66 RKLRELTSLIQKRFGYAKEALQLIVARVQSKGLCAPAQAESLKTKLLAQVPVRTAANAVL 125
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
+ IM GA G E I+SGKL QRAKSMK++ GY+IS+GQP + ID AVRH
Sbjct: 126 KQIMADGAIGAE--------CIISGKLGQQRAKSMKYRAGYIISTGQPKKDLIDVAVRHC 177
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLV 216
+QG++G+KVKI +D GK+G +PD V
Sbjct: 178 FFKQGIIGVKVKIYRPYDPSGKKGIPIEVPDKV 210
>gi|403340419|gb|EJY69494.1| 40S ribosomal protein S3 [Oxytricha trifallax]
Length = 243
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 161/228 (70%), Gaps = 15/228 (6%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+I+ K+KFVADGVF AELNE LTR L DGY+G+EVR T + TEI ++AT+T+ +L +
Sbjct: 11 KINTKKKFVADGVFQAELNEFLTRCLGMDGYAGIEVRATSMSTEIRVKATKTREILEKSA 70
Query: 64 RRIRELTSVVQKRFKFP--ENSVELYAEKVN-NRGLCAIAQAESLRYKLLGGLAVRRACY 120
R++REL S+++KR+ F +N VEL + + ++ LCA AQAE+L+YKLLGG VR A
Sbjct: 71 RKVRELKSLIEKRYNFNDVDNKVELAIKPLPYDKNLCAAAQAENLKYKLLGGTPVRLAAN 130
Query: 121 GVLRFIME-SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
+L +M+ GAKGCE +I+SGK+R QRAKS K+K GY+IS+GQP E++D A
Sbjct: 131 NILAQVMKRGGAKGCE--------IIISGKIRGQRAKSQKYKQGYIISTGQPKLEFVDEA 182
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQK-GKQGPTTPLPDLVTIHPLKEEVY 226
VRHV LRQGVLG+KVKI+ + ++ GK +PD V IH K++ +
Sbjct: 183 VRHVELRQGVLGVKVKILPDTERAVGKYRKI--MPDYVKIHEPKDDHH 228
>gi|308802702|ref|XP_003078664.1| Putative 40S ribosomal protein; contains C-terminal domain (ISS)
[Ostreococcus tauri]
gi|116057117|emb|CAL51544.1| Putative 40S ribosomal protein; contains C-terminal domain (ISS)
[Ostreococcus tauri]
Length = 120
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 110/117 (94%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MAT ISKKRKFVADGVFFAELNE+L RELAEDGYSGVEVRVTP+RTEIIIRATRT NVLG
Sbjct: 1 MATNISKKRKFVADGVFFAELNEMLVRELAEDGYSGVEVRVTPMRTEIIIRATRTANVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
EKGRRIRELT++VQ+RF F E +VELYAEKVNNRGLCAIAQ ESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTTLVQRRFGFAEGTVELYAEKVNNRGLCAIAQCESLRYKLLGGLAVRR 117
>gi|215260015|gb|ACJ64492.1| 40S ribosomal protein S3 [Culex tarsalis]
Length = 165
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/145 (72%), Positives = 113/145 (77%), Gaps = 9/145 (6%)
Query: 86 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVI 145
+YAEKV RGLCA AQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+
Sbjct: 1 MYAEKVATRGLCATAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VV 52
Query: 146 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
VSGKLR QRAKSMKF DG MI SG P NEY+D+A RHVLLRQGVLGIKVKIML WD GK
Sbjct: 53 VSGKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQGVLGIKVKIMLPWDPNGK 112
Query: 206 QGPTTPLPDLVT-IHPLKEEVYVAP 229
GP PLPD V+ + P E +Y P
Sbjct: 113 IGPKKPLPDNVSVVEPKDEIMYSTP 137
>gi|149068846|gb|EDM18398.1| rCG40478, isoform CRA_h [Rattus norvegicus]
Length = 151
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 108/117 (92%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRR 117
>gi|70909549|emb|CAJ17196.1| ribosomal protein S3e [Mycetophagus quadripustulatus]
Length = 158
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/140 (72%), Positives = 112/140 (80%), Gaps = 8/140 (5%)
Query: 86 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVI 145
LY EKV NRGLCAIAQAESLR+KL+GGLAVRRACYGVLR+IME GAKGCE V+
Sbjct: 2 LYGEKVANRGLCAIAQAESLRFKLIGGLAVRRACYGVLRYIMECGAKGCE--------VV 53
Query: 146 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
VSGKLR QRAKSMKF DG MI SG P N+Y+D+A RHVLLRQGVLGIKVKIML WD GK
Sbjct: 54 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVDTATRHVLLRQGVLGIKVKIMLPWDPTGK 113
Query: 206 QGPTTPLPDLVTIHPLKEEV 225
GP PLPD V++ KEE+
Sbjct: 114 TGPKRPLPDNVSVVEPKEEI 133
>gi|255710087|gb|ACU30863.1| 40S ribosomal protein S3 [Ochlerotatus triseriatus]
Length = 157
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/143 (73%), Positives = 112/143 (78%), Gaps = 9/143 (6%)
Query: 88 AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVS 147
AEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+VS
Sbjct: 1 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAKGCE--------VVVS 52
Query: 148 GKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQG 207
GKLR QRAKSMKF DG MI SG P NEY+D+A RHVLLRQGVLGIKVKIML WD GK G
Sbjct: 53 GKLRGQRAKSMKFVDGLMIHSGDPCNEYVDTATRHVLLRQGVLGIKVKIMLPWDPNGKIG 112
Query: 208 PTTPLPDLVT-IHPLKEEVYVAP 229
P PLPD V+ + P E +Y P
Sbjct: 113 PKKPLPDNVSVVEPKDEIMYSTP 135
>gi|395833096|ref|XP_003789581.1| PREDICTED: 40S ribosomal protein S3-like isoform 1 [Otolemur
garnettii]
gi|395833098|ref|XP_003789582.1| PREDICTED: 40S ribosomal protein S3-like isoform 2 [Otolemur
garnettii]
Length = 123
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/123 (86%), Positives = 110/123 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVAD +F AELNE LTRE+AEDGYSGVEVRVTP RT III ATRT+NVLG
Sbjct: 1 MAVQISKKRKFVADDIFKAELNEFLTREVAEDGYSGVEVRVTPTRTAIIILATRTRNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGR IRELT+VVQKRF FPE SVELYAEK RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRCIRELTAVVQKRFGFPEGSVELYAEKGATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVL 123
GVL
Sbjct: 121 GVL 123
>gi|407844367|gb|EKG01924.1| 40S ribosomal protein S3, putative, partial [Trypanosoma cruzi]
Length = 160
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/165 (62%), Positives = 128/165 (77%), Gaps = 8/165 (4%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKR + DGVF+AEL E L RELA+DG++GVE RVT RTEI+IRAT+T+ VLGEKGR
Sbjct: 4 LSKKRMIIRDGVFYAELFEFLKRELADDGFAGVEHRVTSTRTEIVIRATKTREVLGEKGR 63
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT+ +Q+RF + E ++L+AE+V RGL A+AQAESLR+KLL L VRRA G++R
Sbjct: 64 RIRELTACLQQRFHYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIR 123
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSG 169
+MESGAKGCE V V GK++ QRAKSM F+DGYMI SG
Sbjct: 124 HVMESGAKGCE--------VTVGGKIKGQRAKSMTFRDGYMIKSG 160
>gi|239505101|gb|ACR78696.1| ribosomal protein S3 [Rimicaris exoculata]
Length = 126
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/134 (77%), Positives = 112/134 (83%), Gaps = 8/134 (5%)
Query: 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA 102
P RTEIII ATRTQNVLGE+GRRIRELTS+VQKRF F + +VELYAEKV RGLCAIAQA
Sbjct: 1 PARTEIIILATRTQNVLGEEGRRIRELTSLVQKRFGFADGTVELYAEKVAQRGLCAIAQA 60
Query: 103 ESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKD 162
ESLRYKL+GGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF D
Sbjct: 61 ESLRYKLVGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFTD 112
Query: 163 GYMISSGQPVNEYI 176
G MI SG+P Y+
Sbjct: 113 GLMIHSGEPRRHYV 126
>gi|323307522|gb|EGA60793.1| Rps3p [Saccharomyces cerevisiae FostersO]
Length = 184
Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 105/171 (61%), Positives = 133/171 (77%), Gaps = 11/171 (6%)
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+ GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 5 KNGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 64
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 65 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 116
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE +AP+
Sbjct: 117 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 165
>gi|443917610|gb|ELU38287.1| 40S ribosomal protein S3 [Rhizoctonia solani AG-1 IA]
Length = 592
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 157/279 (56%), Gaps = 57/279 (20%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEI-----IIRATRT 55
MA+QISKKRKFVADGVF AEL E TRELAE+GYSG EVRVT RTE+ + A+
Sbjct: 285 MASQISKKRKFVADGVFRAELGEFFTRELAEEGYSGCEVRVTHARTEVSLSPETLYASGF 344
Query: 56 QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN--------NRGLCAIAQAESLRY 107
N G R+ + +V K + ++ + +++ R +C + + ++ +
Sbjct: 345 PNARLNFGNRLSSVR-LVPKMYSVKRDAGSGSSRRLSKSGSSSPKTRSICMLKRCRAVVF 403
Query: 108 KLL----------------------------------GGLAVRRACYGVLRFIMESGAKG 133
+LL G ++ ACYGVLRF+MESGAKG
Sbjct: 404 RLLRSASRCGTSYWVDSLFVGEFDSSFGCARGVGADSPGGNLKSACYGVLRFVMESGAKG 463
Query: 134 CEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIK 193
CE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AVRHVLLRQGVLGIK
Sbjct: 464 CE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPARDFVDYAVRHVLLRQGVLGIK 515
Query: 194 VKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPAT 231
VKIM WD G GP PLPD VTI P ++V P +
Sbjct: 516 VKIMKGWDPTGNLGPKKPLPDTVTIQEPPIDKVVAEPTS 554
>gi|432099483|gb|ELK28641.1| 40S ribosomal protein S3 [Myotis davidii]
Length = 165
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 129/175 (73%), Gaps = 13/175 (7%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA +ISKKRK VADG+F AELN+ LT+ELAEDGYSGVE++VTP +TEIII ATR QNVL
Sbjct: 1 MAVKISKKRKLVADGIFKAELNKFLTQELAEDGYSGVEIQVTPTKTEIIIWATRMQNVLS 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGL--CAIAQAESLRYKLLGGLAVRRA 118
E G+++ ELT++VQKRF E SV+ Y E V +GL CA AQAESL YKLLGGLA+ A
Sbjct: 61 ETGQQLWELTAMVQKRFGNSEGSVDFYDETVATKGLLVCATAQAESLHYKLLGGLAMLWA 120
Query: 119 CYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
Y +L+FIMES AKGC KV+VS K QRAKSMKF +G M G PVN
Sbjct: 121 FYSMLQFIMESRAKGC--------KVMVSEKHLGQRAKSMKFVNGLM---GDPVN 164
>gi|410040211|ref|XP_003950757.1| PREDICTED: 40S ribosomal protein S3-A-like [Pan troglodytes]
gi|410040213|ref|XP_003950758.1| PREDICTED: 40S ribosomal protein S3-A-like [Pan troglodytes]
gi|410040215|ref|XP_003950759.1| PREDICTED: 40S ribosomal protein S3-A-like [Pan troglodytes]
Length = 122
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 110/130 (84%), Gaps = 8/130 (6%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+NE LT+ELAEDGYSGVE+RVTP RTEIII ATRTQNVLGEKG RIRELT+VVQKRF P
Sbjct: 1 MNEFLTQELAEDGYSGVEMRVTPTRTEIIILATRTQNVLGEKGWRIRELTAVVQKRFGSP 60
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
E SVELYAEKV RGLCAIAQAESL YKLLGGLAVRRACYG L FIME+GAKGCE
Sbjct: 61 EGSVELYAEKVATRGLCAIAQAESLPYKLLGGLAVRRACYGALWFIMETGAKGCE----- 115
Query: 141 SSKVIVSGKL 150
V+VSGKL
Sbjct: 116 ---VVVSGKL 122
>gi|426369813|ref|XP_004051878.1| PREDICTED: 40S ribosomal protein S3 isoform 5 [Gorilla gorilla
gorilla]
Length = 154
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/140 (74%), Positives = 110/140 (78%), Gaps = 10/140 (7%)
Query: 95 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQR 154
GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR QR
Sbjct: 6 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQR 57
Query: 155 AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
AKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD GK GP PLPD
Sbjct: 58 AKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPD 117
Query: 215 LVTIHPLKEEVYVAPATATS 234
V+I K+E+ P T S
Sbjct: 118 HVSIVEPKDEIL--PTTPIS 135
>gi|410039268|ref|XP_003950581.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S3-like [Pan
troglodytes]
Length = 238
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/235 (52%), Positives = 147/235 (62%), Gaps = 18/235 (7%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M QISKKRKFV DG+ EL + TRELAEDGYSGVEV++ RTEIII AT+TQNVLG
Sbjct: 1 MGVQISKKRKFVTDGILKVELKKFXTRELAEDGYSGVEVQIMSTRTEIIILATKTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKG +I++L +VVQKR PE SVEL+A KV RG+C A ES Y LLGGLA +RAC
Sbjct: 61 EKGWQIQKLPAVVQKRSGXPEGSVELFAGKVATRGMCVFAXVESQCY-LLGGLAAQRACC 119
Query: 121 GVLRFIMES-GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
GVL FI GA G F +VS + +K KF D MI S V ID+A
Sbjct: 120 GVLWFIRRGXGATG--FKAVVS-----------ENSKCRKFVDDLMILSRNSVY-LIDTA 165
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
+ VLL+QGVL IK K+ML WD GK LP+ ++I K+EV P T S
Sbjct: 166 MCQVLLQQGVLAIKXKVMLPWDPAGKTDSRKALPEHMSIVEPKDEVL--PTTPXS 218
>gi|152061033|gb|AAI50502.1| RPS3 protein [Homo sapiens]
Length = 133
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 106/129 (82%), Gaps = 8/129 (6%)
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM
Sbjct: 12 ELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 71
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQ
Sbjct: 72 ESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQ 123
Query: 188 GVLGIKVKI 196
GV V +
Sbjct: 124 GVWDTSVHL 132
>gi|302142415|emb|CBI19618.3| unnamed protein product [Vitis vinifera]
Length = 576
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/214 (54%), Positives = 127/214 (59%), Gaps = 72/214 (33%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRKF DGVFFA LNEVLTREL E+GYSG EVRVTP+ TEIIIRAT+T NVLGEKG+
Sbjct: 1 MSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+I+ELTS LLGGLA+
Sbjct: 61 KIKELTS-------------------------------------LLGGLAM--------- 74
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
L AQRAKSMKFKDGY+ISSGQPV +YID AVRHV
Sbjct: 75 -------------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV- 108
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
LRQGVLGIKVKIM WD KGKQ TTPLPDLVTI
Sbjct: 109 LRQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTI 142
>gi|440906791|gb|ELR57014.1| 40S ribosomal protein S3 [Bos grunniens mutus]
Length = 220
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/196 (58%), Positives = 125/196 (63%), Gaps = 36/196 (18%)
Query: 1 MATQISK-KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
MA QISK + F DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRT+N L
Sbjct: 1 MAVQISKIESVFEEDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIMATRTENAL 60
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
G++G RI+E T VVQKR FPE +V LYAEKV LCAI QAESL Y+L GGL V RA
Sbjct: 61 GKEGWRIQEFTVVVQKRCGFPECTVALYAEKVATGNLCAIVQAESLHYRLPGGLTVPRAY 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
YG LRFIM G K S PVN Y+D++
Sbjct: 121 YGELRFIM--GPKAV---------------------------------SEDPVNYYVDTS 145
Query: 180 VRHVLLRQGVLGIKVK 195
RHVLLRQGVLGIKVK
Sbjct: 146 ARHVLLRQGVLGIKVK 161
>gi|384494103|gb|EIE84594.1| 40S ribosomal protein [Rhizopus delemar RA 99-880]
Length = 131
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 106/119 (89%), Gaps = 1/119 (0%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A QISKKRK VADGVF+AELNE LTRELAE GY+GVEVRVTP RTEIIIRAT TQNVLGE
Sbjct: 3 AVQISKKRK-VADGVFYAELNEFLTRELAEAGYAGVEVRVTPARTEIIIRATHTQNVLGE 61
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KGRRIRELT++VQKRFKFPEN+VELYAE+V NRGLCAIAQ ES+++KLL GLA CY
Sbjct: 62 KGRRIRELTTLVQKRFKFPENAVELYAERVQNRGLCAIAQCESVKFKLLNGLACLLRCY 120
>gi|89513159|gb|ABD74442.1| ribosomal protein S3 [Anopheles quadrimaculatus]
Length = 111
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 101/119 (84%), Gaps = 8/119 (6%)
Query: 36 GVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF F +VELYAEKV RG
Sbjct: 1 GVEVRVTPTRTEIIIMATRTQNVLGEKGRRIRELTAVVQKRFDFAPGTVELYAEKVATRG 60
Query: 96 LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQR 154
LCAIAQAESLR KL+GGLAVRRACYGVLRFIMESGAKGCE V+VSGKLR QR
Sbjct: 61 LCAIAQAESLRCKLIGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQR 111
>gi|256073701|ref|XP_002573167.1| 40S ribosomal protein S3 [Schistosoma mansoni]
gi|360045524|emb|CCD83072.1| putative 40s ribosomal protein S3 [Schistosoma mansoni]
Length = 152
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
EL+E L RELA+DGYS +VR + TE+II AT+TQ+VLGE RIREL SV+QKRF F
Sbjct: 3 ELDEFLKRELADDGYSASQVRESRKYTEVIILATKTQSVLGEDSLRIRELASVLQKRFGF 62
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ ++ L+ +K+ RGL AIAQAESLRYKL GL VR+ACYG+LRFI+ESGA+G
Sbjct: 63 SDCALGLFVDKMIFRGLSAIAQAESLRYKLTYGLPVRKACYGILRFIIESGARGV----- 117
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYID 177
VIVSGK++ QRAK+MKF +G +I SG PVN YID
Sbjct: 118 ---GVIVSGKIKDQRAKAMKFCNGLIIHSGDPVNNYID 152
>gi|303390809|ref|XP_003073635.1| 40S ribosomal protein S3 [Encephalitozoon intestinalis ATCC 50506]
gi|303302782|gb|ADM12275.1| 40S ribosomal protein S3 [Encephalitozoon intestinalis ATCC 50506]
Length = 227
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 138/210 (65%), Gaps = 8/210 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
++F+ +G+ AEL E + L +G++ +E+R+ +II++ + +GEK R+++
Sbjct: 19 KRFMKNGLMNAELKEFFEKALVNEGFNTMELRMQETPIKIILKVAKPHEAIGEKKYRLKQ 78
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+V +R + P+ +VE+ EKV+ +GLCA+ QA +R K+LGG+ RR+ L+ +
Sbjct: 79 FQHLVAQRLEVPDENVEIIVEKVHEKGLCALIQANFIREKMLGGVQYRRSVNMALKAVRH 138
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
SGA+GC+ +IVSGKL+ QRAKS+KF+DG +I SG PV +YID+ V +QG
Sbjct: 139 SGAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGNPVKDYIDTGYATVETKQG 190
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
V+GI+V+IML +D +G GP+ PLPD +TI
Sbjct: 191 VIGIQVRIMLPYDPEGVLGPSYPLPDRITI 220
>gi|149391165|gb|ABR25600.1| 40S ribosomal protein S3 [Oryza sativa Indica Group]
Length = 108
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/109 (83%), Positives = 94/109 (86%), Gaps = 8/109 (7%)
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV
Sbjct: 1 GVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 52
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
RHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVTIH KEE + P
Sbjct: 53 RHVLLRQGVLGIKVKIMLDWDPKGKVGPTTPLPDLVTIHAPKEEEELRP 101
>gi|226482852|emb|CAX79393.1| ribosomal protein S3 [Schistosoma japonicum]
gi|226482854|emb|CAX79394.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 138
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/132 (68%), Positives = 101/132 (76%), Gaps = 8/132 (6%)
Query: 94 RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ 153
RGL AIAQAESLRYKL GL VR+ACYG+LRFIMESGA+G E VIVSGK++ Q
Sbjct: 4 RGLSAIAQAESLRYKLTYGLPVRKACYGILRFIMESGARGAE--------VIVSGKIKGQ 55
Query: 154 RAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
RAK+MKF DG MI SG PVN Y+D AVRHV L QG+LGIKVKIM++ D GK+GP PLP
Sbjct: 56 RAKAMKFCDGLMIHSGDPVNYYVDKAVRHVQLPQGILGIKVKIMMDHDSSGKKGPRKPLP 115
Query: 214 DLVTIHPLKEEV 225
D VTI KEEV
Sbjct: 116 DTVTILAAKEEV 127
>gi|396082067|gb|AFN83679.1| 40S ribosomal protein S3 [Encephalitozoon romaleae SJ-2008]
Length = 216
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 135/210 (64%), Gaps = 8/210 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
++F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+++
Sbjct: 8 KRFMKNGLINAELKEFFEKVLVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKLRLKQ 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+V +R + P+ +VE+ EKV+ +GLCA+ QA +R K+LGG+ RRA L+
Sbjct: 68 FQHLVAQRLEVPDENVEIIVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKATRH 127
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
SGA+GC+ +IVSGKL+ QRAKS+KF+DG +I SG V +YI++ V +QG
Sbjct: 128 SGAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGNAVKDYINTGYATVETKQG 179
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
V+GI+V+IML +D +G GP PLPD +TI
Sbjct: 180 VIGIQVRIMLPYDPEGVIGPNYPLPDRITI 209
>gi|401828611|ref|XP_003888019.1| 40S ribosomal protein S3 [Encephalitozoon hellem ATCC 50504]
gi|392999027|gb|AFM99038.1| 40S ribosomal protein S3 [Encephalitozoon hellem ATCC 50504]
Length = 216
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 135/210 (64%), Gaps = 8/210 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
++F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+++
Sbjct: 8 KRFMKNGLINAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKIRLKQ 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+V +R + P+ +VE+ EKV+ +GLCA+ QA +R K+LGG+ RRA L+
Sbjct: 68 FQHLVAQRLEVPDENVEIVVEKVHEKGLCALIQANFIREKMLGGVQYRRAVNMALKATRH 127
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
SGA+GC+ +IVSGKL+ QRAKS+KF+DG +I SG VN+YI++ V +QG
Sbjct: 128 SGAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGNAVNDYINTGYATVETKQG 179
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++GI+V+IML D +G GP+ LPD +TI
Sbjct: 180 IIGIQVRIMLPHDPEGVIGPSYALPDRITI 209
>gi|85014361|ref|XP_955676.1| 40S ribosomal protein S3 [Encephalitozoon cuniculi GB-M1]
gi|51701889|sp|Q8SQM3.1|RS3_ENCCU RecName: Full=40S ribosomal protein S3
gi|449330262|gb|AGE96522.1| 40S ribosomal protein S3 [Encephalitozoon cuniculi]
Length = 228
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 132/209 (63%), Gaps = 8/209 (3%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+ +R + P+ SVE+ EKV+ +GLCA+ QA +R K+LGG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
A+GC+ +IVSGKL+ QRAKS+KF+DG +I SG V +YI++ V +QGV
Sbjct: 141 KAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGV 192
Query: 190 LGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+GI+V+IML +D +G GP PLPD +TI
Sbjct: 193 IGIQVRIMLPYDPEGVLGPNYPLPDRITI 221
>gi|392513001|emb|CAD27095.2| 40S RIBOSOMAL PROTEIN S3 [Encephalitozoon cuniculi GB-M1]
Length = 216
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 132/209 (63%), Gaps = 8/209 (3%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+R+
Sbjct: 9 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 68
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+ +R + P+ SVE+ EKV+ +GLCA+ QA +R K+LGG+ RRA L+ +
Sbjct: 69 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 128
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
A+GC+ +IVSGKL+ QRAKS+KF+DG +I SG V +YI++ V +QGV
Sbjct: 129 KAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGV 180
Query: 190 LGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+GI+V+IML +D +G GP PLPD +TI
Sbjct: 181 IGIQVRIMLPYDPEGVLGPNYPLPDRITI 209
>gi|149068843|gb|EDM18395.1| rCG40478, isoform CRA_e [Rattus norvegicus]
Length = 129
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 87/97 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLC 97
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLW 97
>gi|148684440|gb|EDL16387.1| ribosomal protein S3, isoform CRA_b [Mus musculus]
Length = 129
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/121 (74%), Positives = 95/121 (78%), Gaps = 1/121 (0%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGL ++ +G A R C
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLWPAMVCFGSLWR-VGPRAARLWCL 119
Query: 121 G 121
G
Sbjct: 120 G 120
>gi|294882949|ref|XP_002769895.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
gi|239873720|gb|EER02613.1| 40S ribosomal protein S3, putative [Perkinsus marinus ATCC 50983]
Length = 157
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 102/135 (75%), Gaps = 9/135 (6%)
Query: 100 AQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMK 159
AQAESLRYKLLGGL VRRA YGVLRF+ME+GAKG E V VSGKLRAQRAK MK
Sbjct: 1 AQAESLRYKLLGGLPVRRAAYGVLRFVMENGAKGVE--------VTVSGKLRAQRAKVMK 52
Query: 160 FKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
F DGY++S+G P Y+D A+R+V +RQG+LGI+VKIM+ +D +GK GP T LPD +TIH
Sbjct: 53 FADGYLLSTGTPKEMYVDQAIRNVDMRQGILGIRVKIMMAYDPEGKSGPKTRLPDDITIH 112
Query: 220 PLKEEVYVAPATATS 234
KE+ V P AT+
Sbjct: 113 EPKEDT-VFPIEATT 126
>gi|224034403|gb|ACN36277.1| unknown [Zea mays]
gi|413917293|gb|AFW57225.1| hypothetical protein ZEAMMB73_370294 [Zea mays]
gi|413917294|gb|AFW57226.1| hypothetical protein ZEAMMB73_370294 [Zea mays]
Length = 103
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 88/111 (79%), Gaps = 8/111 (7%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR
Sbjct: 1 MESGAKGCE--------VIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIEL 237
QGVLGIKVKIML+WD KGK GP TPLPDLVTIH K+E P E+
Sbjct: 53 QGVLGIKVKIMLDWDPKGKVGPITPLPDLVTIHTPKDEDEPRPPVLAPPEV 103
>gi|347527|gb|AAA18095.1| ribosomal protein S3, partial [Homo sapiens]
Length = 95
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/95 (88%), Positives = 86/95 (90%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
EKGRRIRELT+VVQKRF FPE SVELYAEKV RG
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG 95
>gi|395539389|ref|XP_003771653.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S3-like
[Sarcophilus harrisii]
Length = 361
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 132/231 (57%), Gaps = 46/231 (19%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M QI+KKR F ADG+F E E LTR++AEDGYSGV P RTEII+ ATRT +LG
Sbjct: 1 MVVQIAKKRNFAADGIFKPEX-EFLTRKVAEDGYSGVRY---PTRTEIILLATRT--LLG 54
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+ LT VVQK F FPE + A SL YKLLGGLAV RAC
Sbjct: 55 HX--KFVNLTPVVQK-FGFPE------------------SNATSLCYKLLGGLAVCRACC 93
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
G E G KGCE +++SGKLR QRAKSMKF D MI SG P+N YID AV
Sbjct: 94 G------EWG-KGCE--------MVMSGKLRGQRAKSMKFVDVLMIQSGDPLNHYIDIAV 138
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 231
+ +KVKIML WD K GP LPDLV+I K+E+ PAT
Sbjct: 139 HSS--NRVCWELKVKIMLLWDPNSKIGPKNSLPDLVSIVKPKDEIL--PAT 185
>gi|95116517|gb|ABF56171.1| 40S ribosomal protein S3 [Theobroma cacao]
Length = 86
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/94 (89%), Positives = 85/94 (90%), Gaps = 8/94 (8%)
Query: 58 VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 1 VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 60
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR 151
ACYGVLRFIMESGAKGCE V+VSG LR
Sbjct: 61 ACYGVLRFIMESGAKGCE--------VMVSGXLR 86
>gi|310771967|emb|CBH28921.1| 40S ribosomal protein S3 [Anncaliia algerae]
Length = 216
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 129/207 (62%), Gaps = 8/207 (3%)
Query: 12 VADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
+ G+ AEL+E + EL E+GY G+++++ + +I IR + ++V+G+K R+ +
Sbjct: 12 IQKGLMHAELDEFFSIELKEEGYGGMDIKLHEMPVQITIRVNKPEDVMGDKKSRLNLIKH 71
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
++ +RF + VE+ E + N+GLC + QA+ +R KL G+ RRA + ++ I + GA
Sbjct: 72 LLMQRFPLLSSGVEINVEMIKNKGLCPMTQADFIRVKLFSGIPFRRAVHAAMKSIKDGGA 131
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLG 191
+GC +I+SGKL+ QRAKS+K++ G MI +G ++ A+ VLL+QGV+G
Sbjct: 132 QGCV--------IIISGKLKGQRAKSVKYQQGLMIHTGNDRKLFVKEAISTVLLKQGVIG 183
Query: 192 IKVKIMLEWDQKGKQGPTTPLPDLVTI 218
IKVKIML +D G GP+ + D +TI
Sbjct: 184 IKVKIMLPYDPTGINGPSREICDKITI 210
>gi|402466373|gb|EJW01879.1| ribosomal protein S3 [Edhazardia aedis USNM 41457]
Length = 227
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATR-TQNVLGEKGR 64
S +F+ +G+ +AELNE T+E DGY+G E+ + I ++ ++ T V+G
Sbjct: 11 STVNRFIKNGLIYAELNEYFTKEFYADGYAGCEIFHNSIPMRIYLKVSKPTAEVIGTNKC 70
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+++ S++ KR +N V++ E + +GLC QA ++ +LL +VRRA Y +R
Sbjct: 71 RIKQVRSLIAKRLGMADNDVDILVEMIKKKGLCPFTQAVNIAQRLLVNASVRRAVYSSIR 130
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
E GA+G E VIVSGK + QRA+S KF DG MI SGQP +Y+ + V
Sbjct: 131 AAKEEGAQGIE--------VIVSGKTKGQRARSTKFIDGLMIHSGQPAKDYVKTGFTAVE 182
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD-LVTIHPLKEEV 225
+RQGV+GIKVKIML +D +G GP + D ++ P EV
Sbjct: 183 MRQGVIGIKVKIMLPYDPEGIIGPNKVMADKVIVFEPKDSEV 224
>gi|4680363|gb|AAD27643.1|AF133129_1 ribosomal protein S3 [Meriones unguiculatus]
Length = 128
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 89/119 (74%), Gaps = 10/119 (8%)
Query: 116 RRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEY 175
RRACYGVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y
Sbjct: 1 RRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYY 52
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
+D+AVRHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 53 VDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 109
>gi|426375157|ref|XP_004054412.1| PREDICTED: 40S ribosomal protein S3-like [Gorilla gorilla
gorilla]
Length = 110
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 82/92 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAE G SGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEHGCSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92
EKGRRIRELT+VVQKRF FPE SVELYAEK N
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKCN 92
>gi|315139154|gb|ADT80771.1| ribosomal protein S3 [Heliothis subflexa]
gi|315139156|gb|ADT80772.1| ribosomal protein S3 [Heliothis virescens]
Length = 126
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 86/116 (74%), Gaps = 9/116 (7%)
Query: 117 RACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYI 176
RACYGVLRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+
Sbjct: 1 RACYGVLRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 52
Query: 177 DSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
++A RHVLLRQGVLGIKVKIML WDQ+GK GP P PD + + P E V + P +
Sbjct: 53 NTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTS 108
>gi|308802700|ref|XP_003078663.1| putative ribosomal protein (ISS) [Ostreococcus tauri]
gi|116057116|emb|CAL51543.1| putative ribosomal protein (ISS) [Ostreococcus tauri]
Length = 145
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 85/110 (77%), Gaps = 8/110 (7%)
Query: 115 VRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNE 174
VR ACYGVLR+IMESGAKG E V+VSGKLR QRAK+MKFKDGYMISSG PV +
Sbjct: 30 VRSACYGVLRYIMESGAKGAE--------VVVSGKLRGQRAKAMKFKDGYMISSGNPVRD 81
Query: 175 YIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
YI S RH LLRQG +G++VKIML+ D KG+ GP+TP+PD V IH KE+
Sbjct: 82 YIVSCTRHALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKED 131
>gi|387594476|gb|EIJ89500.1| hypothetical protein NEQG_00270 [Nematocida parisii ERTm3]
gi|387596684|gb|EIJ94305.1| hypothetical protein NEPG_00972 [Nematocida parisii ERTm1]
Length = 244
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 123/213 (57%), Gaps = 8/213 (3%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
V G+ + ELNE+ ++ + DGY+G++ + EI ++ + +L + RI++L
Sbjct: 20 IVNQGLIYTELNEMFSKFMENDGYAGMDYKPYTSPIEITLKLGKPSGMLEDNKLRIKQLI 79
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
S++Q RF+ E SV ++ E+V NR L A QA+ ++ KL GL VRR G +R IME G
Sbjct: 80 SLIQMRFRLEEGSVSIFIEQVKNRALNAQIQADLIKEKLGAGLPVRRVVSGAIRTIMEGG 139
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
A G E VI+SGKL+ QRA+S K +G + SG +Y+ + +LL+QG+L
Sbjct: 140 ASGAE--------VIISGKLKGQRARSYKVSEGILKHSGNSTKDYVKKGMSSILLKQGIL 191
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
GIKV I L++D GK G P VTI +E
Sbjct: 192 GIKVGITLKYDPTGKVGTPVQHPSNVTIFSQEE 224
>gi|149068851|gb|EDM18403.1| rCG40478, isoform CRA_m [Rattus norvegicus]
Length = 98
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/85 (89%), Positives = 78/85 (91%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVE 85
EKGRRIRELT+VVQKRF FPE SVE
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVE 85
>gi|444729886|gb|ELW70289.1| 40S ribosomal protein S3-A [Tupaia chinensis]
Length = 174
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 84/100 (84%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
+K RKFV G+F AELNE LT+ELA+DGYSGVE RVTP RTEIII ATRTQNVLGEKG++
Sbjct: 75 AKNRKFVTYGIFKAELNEFLTQELAKDGYSGVEGRVTPTRTEIIILATRTQNVLGEKGQQ 134
Query: 66 IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESL 105
RELT+V+QKRF FPE SVELYAEKV R L AI QAESL
Sbjct: 135 TRELTAVIQKRFGFPEGSVELYAEKVATRSLFAIVQAESL 174
>gi|238613775|ref|XP_002398529.1| hypothetical protein MPER_00865 [Moniliophthora perniciosa FA553]
gi|215475235|gb|EEB99459.1| hypothetical protein MPER_00865 [Moniliophthora perniciosa FA553]
Length = 100
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/85 (87%), Positives = 78/85 (91%)
Query: 48 IIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRY 107
IIIRAT TQ VLGEKGRRIRELT++VQKRFKFPENS+ELYAEKV RGL AIAQ ESLRY
Sbjct: 1 IIIRATHTQEVLGEKGRRIRELTALVQKRFKFPENSLELYAEKVQYRGLSAIAQCESLRY 60
Query: 108 KLLGGLAVRRACYGVLRFIMESGAK 132
KLL GLAVRRACYGVLRF+MESGAK
Sbjct: 61 KLLNGLAVRRACYGVLRFVMESGAK 85
>gi|300708361|ref|XP_002996361.1| hypothetical protein NCER_100555 [Nosema ceranae BRL01]
gi|239605657|gb|EEQ82690.1| hypothetical protein NCER_100555 [Nosema ceranae BRL01]
Length = 214
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 8/215 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+KF+ADG+ FAEL E+ + L +G+S +E+R+ ++I++ + Q ++G+K +I +
Sbjct: 8 KKFIADGMIFAELKELFEKCLINEGFSSLELRLEESPVKVILKVVKPQELIGDKKWKIVQ 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ +V R P+++V + +KV +GLC + QA +R K+L + +RA VL+
Sbjct: 68 IQHLVASRLSLPDSNVVVIIDKVVEKGLCPVYQANLIREKMLANIPHKRAANLVLKNTKF 127
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA GC V +SGKL+ RA + KF +G +I SGQP +Y+ + V +QG
Sbjct: 128 AGATGC--------LVTISGKLKGLRACTKKFLEGVVIKSGQPSRDYVKKHITTVNTKQG 179
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
V+GI+V IML D +G GP+T LPD + + KE
Sbjct: 180 VIGIQVSIMLPHDPEGILGPSTLLPDKIVVLDAKE 214
>gi|323303371|gb|EGA57167.1| Rps3p [Saccharomyces cerevisiae FostersB]
Length = 136
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 97/127 (76%), Gaps = 11/127 (8%)
Query: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGY 164
+++KLL GLA+RRA YGV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG+
Sbjct: 1 MKFKLLNGLAIRRAAYGVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGF 52
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKE 223
+I SGQPVN++ID+A RHVL+RQGVLGIKVKIM + K + G LPD VT I P +E
Sbjct: 53 LIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTG-XKALPDAVTIIEPKEE 110
Query: 224 EVYVAPA 230
E +AP+
Sbjct: 111 EPILAPS 117
>gi|440493994|gb|ELQ76410.1| 40S ribosomal protein S3 [Trachipleistophora hominis]
Length = 214
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 11/211 (5%)
Query: 12 VADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
+A G+ +AELNE +EL E GYS ++ V +IIIR +T +++ E R++++TS
Sbjct: 14 IATGIAYAELNEFFGKELMESGYSSMKFLAHEVPLKIIIRVLKTDDLINENRYRLKQITS 73
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
+V+KR K V + E V ++GLC QAE +R K+ GLA RRA G LR I E+GA
Sbjct: 74 LVKKRLK---KDVTILVEMVKDKGLCPNVQAEYIRKKMSEGLAYRRAVNGALRTIKEAGA 130
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLG 191
+GC ++VSGKL+ QRA+S K I SG P EY+ V L+QGV+G
Sbjct: 131 QGC--------IIVVSGKLKGQRARSQKMMWQTNIYSGSPKEEYMRGGKSTVHLKQGVIG 182
Query: 192 IKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
I VKIML D +G +GP + D + + +K
Sbjct: 183 IIVKIMLPHDPEGIRGPRREMVDKIRVLDVK 213
>gi|149641402|ref|XP_001506205.1| PREDICTED: 40S ribosomal protein S3-A-like, partial
[Ornithorhynchus anatinus]
Length = 85
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/85 (88%), Positives = 77/85 (90%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA ISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVPISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVE 85
EKGRRIRELT+VVQKRF FPE SVE
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVE 85
>gi|378756656|gb|EHY66680.1| hypothetical protein NERG_00320 [Nematocida sp. 1 ERTm2]
Length = 243
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 126/229 (55%), Gaps = 13/229 (5%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
V+ G+ + ELNE+ ++ + D Y+G++ + EI ++ + +L RI++L
Sbjct: 20 IVSQGMVYTELNEMFSKFMINDEYAGMDYKPYSSPIEITLKLGKPAGMLENNKLRIKQLI 79
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+++Q RF+ E SV ++ E+V N+ L A QA +R K+ L VRRA G +R IME G
Sbjct: 80 TLIQMRFRLEEGSVSIFIEQVKNKALNAQIQANQIREKIGASLPVRRAVSGAIRTIMEGG 139
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
A G E VI+SGKL+ QRA+S K G M SG + +Y+ + +LL+QG+L
Sbjct: 140 AAGVE--------VIISGKLKGQRARSYKVVGGIMKHSGDSIKDYVKKGMSSILLKQGIL 191
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-----EVYVAPATATS 234
GIKV I L+ D GK G P VTI +E +V PA A S
Sbjct: 192 GIKVAITLKHDPTGKIGTAVQHPSSVTIFSQEELAQKKKVKAYPAKAYS 240
>gi|429965063|gb|ELA47060.1| ribosomal protein S3 [Vavraia culicis 'floridensis']
Length = 214
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 122/212 (57%), Gaps = 11/212 (5%)
Query: 12 VADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
+A G+ +AELNE +EL E GYS ++ V +IIIR + +++ E R++++TS
Sbjct: 14 IATGIAYAELNEFFAKELMESGYSSMKFLAHEVPLKIIIRVLKADDLINENRYRLKQITS 73
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
+V+KR V + E V ++GLC QAE +R K+ GL RRA G LR I E+GA
Sbjct: 74 LVKKRL---NKDVTILVEMVKDKGLCPNVQAEYIRKKMSEGLTYRRAVNGALRTIKEAGA 130
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLG 191
+GC +IVSGKL+ QRA+S K I SG P EY+ V L+QGV+G
Sbjct: 131 QGC--------IIIVSGKLKGQRARSQKMMWQTNIYSGSPKEEYMREGKSTVHLKQGVIG 182
Query: 192 IKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
I VKIML D +G +GP + D + + +KE
Sbjct: 183 IIVKIMLPHDPEGIRGPRREMVDKIRVLDVKE 214
>gi|410812263|gb|AFV81473.1| 40S ribosomal protein S3, partial [Scrobicularia plana]
Length = 113
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 77/97 (79%), Gaps = 8/97 (8%)
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P+N+Y+D+AVR
Sbjct: 1 VLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAVR 52
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
HVLLRQGVLGIKVKIML WD GK GP PLPD V+I
Sbjct: 53 HVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI 89
>gi|170055465|ref|XP_001863594.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167875417|gb|EDS38800.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 278
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 109/206 (52%), Gaps = 56/206 (27%)
Query: 30 AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89
A D + VEV VT +RTEIII TRTQ VLGEKG IRELT++VQK +
Sbjct: 73 AADDFLSVEVHVTSIRTEIIIMTTRTQKVLGEKGHHIRELTAIVQKLIR----------- 121
Query: 90 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGK 149
+RRAC +ESGAKG S+V+VSGK
Sbjct: 122 ------------------------DLRRAC-------LESGAKG--------SEVVVSGK 142
Query: 150 LRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPT 209
LR QRAKSMKF DG +I S P NEY D+A RH+LLRQG KIML WD GK P
Sbjct: 143 LRGQRAKSMKFVDGMVIHSRDPCNEYSDTATRHILLRQG-----GKIMLPWDPNGKIDPK 197
Query: 210 TPLP-DLVTIHPLKEEVYVAPATATS 234
PLP +++ + P E ++ P T +
Sbjct: 198 EPLPENVLVVEPKDEIMHNTPGTKNN 223
>gi|83595153|gb|ABC25034.1| ribosomal protein S3 [Hydra vulgaris]
Length = 119
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 79/106 (74%), Gaps = 8/106 (7%)
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
I+ESGAKGCE VIVSGKLR QRAKSMKF DG+MI SG P+ EYID+AVRHV L
Sbjct: 6 ILESGAKGCE--------VIVSGKLRGQRAKSMKFTDGFMIHSGYPIQEYIDTAVRHVYL 57
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 231
RQGVLGIKVKIML WD GK GP PLPD V+I KEEV+ P +
Sbjct: 58 RQGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKEEVFYPPTS 103
>gi|237861296|gb|ACR24221.1| 40S ribosomal protein S3 [Nosema bombycis]
gi|326562626|gb|ADZ95643.1| 40S ribosomal protein S3 [Nosema bombycis]
Length = 214
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 122/215 (56%), Gaps = 8/215 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K +A+G+ +AE+ E + L +G+S V++R +I+++ + + GEK ++++
Sbjct: 8 KKVIANGILYAEIKEFCEKALIPEGFSSVDIRFDENPIKIVLKVVKPHELTGEKKFKLKQ 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
L + R PE ++ + +KV +GLC + QA ++ K+L G+ +RA VLR
Sbjct: 68 LQHLFASRLNVPEMNINIIIDKVVEKGLCPVFQANLIKEKMLAGVQYKRAANLVLRNTKF 127
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA GC + +SGKL+ RA + KF +G +I SGQP +Y+ V +QG
Sbjct: 128 AGATGCL--------ITISGKLKGLRACTKKFLEGVVIKSGQPSKDYVKKYTTTVNTKQG 179
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
V+G++V IML D +G GP+T LPD + + KE
Sbjct: 180 VIGVQVSIMLPHDPEGIIGPSTLLPDKIVVLDAKE 214
>gi|354477339|ref|XP_003500878.1| PREDICTED: 40S ribosomal protein S3-like [Cricetulus griseus]
Length = 152
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 81/113 (71%), Gaps = 10/113 (8%)
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLRF MESGA+GCE V+VSGKLR +RAKSMK DG MI SG PVN Y+D+A+R
Sbjct: 31 VLRFTMESGAEGCE--------VVVSGKLRGERAKSMKLVDGLMIHSGDPVNYYVDTAIR 82
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
HVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 83 HVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIMEPKDEIL--PTTPIS 133
>gi|28189751|dbj|BAC56490.1| similar to ribosomal protein S3 [Bos taurus]
Length = 77
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRF 77
EKGRRIRELT+VVQKRF
Sbjct: 61 EKGRRIRELTAVVQKRF 77
>gi|159163349|pdb|1WH9|A Chain A, Solution Structure Of The Kh Domain Of Human Ribosomal
Protein S3
Length = 92
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 71/79 (89%)
Query: 17 FFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76
F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKR
Sbjct: 8 FKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKR 67
Query: 77 FKFPENSVELYAEKVNNRG 95
F FPE SVELYAEKV RG
Sbjct: 68 FGFPEGSVELYAEKVATRG 86
>gi|149068841|gb|EDM18393.1| rCG40478, isoform CRA_c [Rattus norvegicus]
Length = 105
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKR 76
EKGRRIRELT+VVQKR
Sbjct: 61 EKGRRIRELTAVVQKR 76
>gi|149068842|gb|EDM18394.1| rCG40478, isoform CRA_d [Rattus norvegicus]
Length = 151
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLR
Sbjct: 1 MESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
QGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 53 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 98
>gi|149068840|gb|EDM18392.1| rCG40478, isoform CRA_b [Rattus norvegicus]
gi|344246127|gb|EGW02231.1| 40S ribosomal protein S3 [Cricetulus griseus]
Length = 117
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLR
Sbjct: 1 MESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
QGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 53 QGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 98
>gi|149391843|gb|ABR25845.1| 40S ribosomal protein S3-a [Oryza sativa Indica Group]
Length = 85
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 73/87 (83%), Gaps = 4/87 (4%)
Query: 155 AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
AKSMKFKDGYMISSG PVN YIDSAVRHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD
Sbjct: 1 AKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPD 60
Query: 215 LVTIH-PLKEEVYVAPATATSIELPVA 240
LVTIH P E+ + P TA E+PVA
Sbjct: 61 LVTIHAPKDEDEFSKPLTA---EIPVA 84
>gi|386869506|ref|NP_001247436.1| 40S ribosomal protein S3 isoform 3 [Homo sapiens]
gi|426369805|ref|XP_004051874.1| PREDICTED: 40S ribosomal protein S3 isoform 1 [Gorilla gorilla
gorilla]
gi|426369807|ref|XP_004051875.1| PREDICTED: 40S ribosomal protein S3 isoform 2 [Gorilla gorilla
gorilla]
gi|426369811|ref|XP_004051877.1| PREDICTED: 40S ribosomal protein S3 isoform 4 [Gorilla gorilla
gorilla]
gi|426369815|ref|XP_004051879.1| PREDICTED: 40S ribosomal protein S3 isoform 6 [Gorilla gorilla
gorilla]
gi|21104402|dbj|BAB93471.1| IMR-90 ribosomal protein S3 [Homo sapiens]
Length = 117
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLR
Sbjct: 1 MESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
QGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 53 QGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 98
>gi|148684441|gb|EDL16388.1| ribosomal protein S3, isoform CRA_c [Mus musculus]
Length = 97
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 77/98 (78%), Gaps = 6/98 (6%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98
EKGRRIRELT+VVQ P ++ +NR L A
Sbjct: 61 EKGRRIRELTAVVQNHQPCPSQCLQ------HNRVLAA 92
>gi|405948172|gb|EKC17931.1| 40S ribosomal protein S3, partial [Crassostrea gigas]
Length = 112
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 80/118 (67%), Gaps = 13/118 (11%)
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P+N+Y+D+AVRHVLLRQ
Sbjct: 1 ESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAVRHVLLRQ 52
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPAT----ATSIELPVA 240
GVLGIKVKIML WD GK GP PLPD V+ + P E V P + A E P A
Sbjct: 53 GVLGIKVKIMLPWDPSGKIGPKRPLPDHVSVVEPKDEAVPAHPYSEQKGAKPTEPPAA 110
>gi|8247324|emb|CAB92940.1| putative 40S ribosomal protein S3 [Plasmodium falciparum 3D7]
Length = 110
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 81/107 (75%), Gaps = 8/107 (7%)
Query: 112 GLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQP 171
GLAVRRACYGVLR IMESGAKGCE VIVSGKLRAQRAKSMKF+DGY+IS+G+P
Sbjct: 2 GLAVRRACYGVLRHIMESGAKGCE--------VIVSGKLRAQRAKSMKFRDGYLISTGEP 53
Query: 172 VNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++++A R L+QGVLGIKVKIML + G T+ LPD +++
Sbjct: 54 SKRFVNTATRSAQLKQGVLGIKVKIMLPTAIDTRTGLTSILPDNISV 100
>gi|253746539|gb|EET01746.1| Ribosomal protein S3 [Giardia intestinalis ATCC 50581]
Length = 217
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 14/212 (6%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
K++ D + AEL+E +REL + GY+ + T +II+ + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTADSICVIIQCAEPEIVMGDNHYRLHKI 75
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
++ RF + ++ +K+ RGL A ++LR KL + +RRA Y V+R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSVIRTAMRA 135
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
GA GCE VIV+GKLRAQRA++ KFK+G +IS+G P ++ A RH+ +RQGV
Sbjct: 136 GAAGCE--------VIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGV 187
Query: 190 LGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPL 221
+G+KV+I +G +PD + I P
Sbjct: 188 IGVKVRIY----NPNIRGAV--MPDKIEIGPF 213
>gi|324105279|gb|ADY18402.1| ribosomal protein rps3 [Glycera tridactyla]
Length = 108
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 78/105 (74%), Gaps = 9/105 (8%)
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGAKGCE V+VSGKLR QRAKSMKF DG MI SG+P ++Y+D+AVRHVLLRQ
Sbjct: 1 ESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTHDYVDTAVRHVLLRQ 52
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
GVLGIKVKIML WD GK GP PLPD ++I P +EE+ P +
Sbjct: 53 GVLGIKVKIMLPWDPSGKIGPKHPLPDQISIVEPKEEEIPSQPKS 97
>gi|159117007|ref|XP_001708724.1| Ribosomal protein S3 [Giardia lamblia ATCC 50803]
gi|157436837|gb|EDO81050.1| Ribosomal protein S3 [Giardia lamblia ATCC 50803]
gi|308158393|gb|EFO61089.1| Ribosomal protein S3 [Giardia lamblia P15]
Length = 217
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 112/187 (59%), Gaps = 8/187 (4%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
K++ D + AEL+E +REL + GY+ + T +II+ + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
++ RF + ++ +K+ RGL A ++LR KL + +RRA Y ++R M +
Sbjct: 76 EYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRA 135
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
GA GCE VIV+GKLRAQRA++ KFK+G +IS+G P ++ A RH+ +RQGV
Sbjct: 136 GAAGCE--------VIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGV 187
Query: 190 LGIKVKI 196
+G+KV+I
Sbjct: 188 IGVKVRI 194
>gi|32400841|gb|AAP80652.1|AF479033_1 40S ribosomal protein [Triticum aestivum]
Length = 79
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/72 (86%), Positives = 66/72 (91%)
Query: 158 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
+KFKDGYMISSGQPVNEYID+AVRHVLLRQGVLGIKVKIML+WD KGK GPTTPLPDLVT
Sbjct: 2 VKFKDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVT 61
Query: 218 IHPLKEEVYVAP 229
IHP KEE + P
Sbjct: 62 IHPPKEEDELRP 73
>gi|195650699|gb|ACG44817.1| hypothetical protein [Zea mays]
gi|413917295|gb|AFW57227.1| hypothetical protein ZEAMMB73_370294 [Zea mays]
Length = 80
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 65/80 (81%)
Query: 158 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML+WD KGK GP TPLPDLVT
Sbjct: 1 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKVGPITPLPDLVT 60
Query: 218 IHPLKEEVYVAPATATSIEL 237
IH K+E P E+
Sbjct: 61 IHTPKDEDEPRPPVLAPPEV 80
>gi|22759729|dbj|BAC10913.1| putative ribosomal protein S3 [Zinnia elegans]
Length = 143
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 61/68 (89%)
Query: 152 AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTP 211
AQRAKSMKFKDGYM+SSGQPV EYIDSAVRHVLLRQGVLGIKVKIML+WD GK GP TP
Sbjct: 1 AQRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTP 60
Query: 212 LPDLVTIH 219
LPD V IH
Sbjct: 61 LPDNVVIH 68
>gi|296083751|emb|CBI23740.3| unnamed protein product [Vitis vinifera]
Length = 458
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/87 (73%), Positives = 73/87 (83%)
Query: 39 VRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA 98
+++ EIII AT+TQNVLG+KGR+IRELTSVVQKRF+F EN+VELYAEK NNR A
Sbjct: 322 LQLRDFHMEIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYA 381
Query: 99 IAQAESLRYKLLGGLAVRRACYGVLRF 125
IAQAESLR+KLLGGL VRRA YGVL F
Sbjct: 382 IAQAESLRFKLLGGLVVRRAGYGVLSF 408
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 82/153 (53%), Gaps = 56/153 (36%)
Query: 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESL 105
TEIII AT+TQNVL +KG++IRELTSVVQKR
Sbjct: 110 TEIIIHATQTQNVLCKKGKKIRELTSVVQKR----------------------------- 140
Query: 106 RYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYM 165
F+MESG KGCE VI+SGKL Q AKS+KFKDGY+
Sbjct: 141 -------------------FVMESGTKGCE--------VIMSGKLCVQCAKSIKFKDGYL 173
Query: 166 ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
I SGQ V +YIDS VRHVLL+QG+L IK L
Sbjct: 174 IFSGQLVKDYIDSTVRHVLLKQGILSIKFVFYL 206
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 197 MLEWDQKGKQGPTTPLPDLVTIH 219
+L +D KGKQGPTTPLP+LVTI
Sbjct: 405 VLSFDPKGKQGPTTPLPNLVTIQ 427
>gi|158187818|gb|ABW23198.1| ribosomal protein rps3 [Eurythoe complanata]
Length = 105
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 73/102 (71%), Gaps = 10/102 (9%)
Query: 133 GCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGI 192
GCE V+VSGKLR QRAKSMKF DG MI SG+P N+Y+D+AVRHVLLRQGVLGI
Sbjct: 1 GCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGEPTNDYVDTAVRHVLLRQGVLGI 52
Query: 193 KVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
KVKIML WD GK GP PLPD V+I K+E PA TS
Sbjct: 53 KVKIMLPWDPAGKIGPKRPLPDHVSIVEPKDE--TPPAQPTS 92
>gi|440907841|gb|ELR57934.1| 40S ribosomal protein S3 [Bos grunniens mutus]
Length = 158
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 83/129 (64%), Gaps = 17/129 (13%)
Query: 109 LLGGLAV---RRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYM 165
+GGL V AC G R ++ K CE V+VSGKL+ QRAKSMKF DG M
Sbjct: 25 FVGGLTVLGPALACCGSSRRVI----KDCE--------VVVSGKLQGQRAKSMKFVDGLM 72
Query: 166 ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
I SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+
Sbjct: 73 IHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 132
Query: 226 YVAPATATS 234
P T S
Sbjct: 133 L--PTTPIS 139
>gi|242222173|ref|XP_002476815.1| 40S ribosomal protein S3 [Postia placenta Mad-698-R]
gi|220723885|gb|EED77980.1| 40S ribosomal protein S3 [Postia placenta Mad-698-R]
Length = 136
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 76/106 (71%), Gaps = 9/106 (8%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLRA RAKSMKF DG+MI SGQP +++D AVRHV+LR
Sbjct: 1 MESGAKGCE--------VVVSGKLRAARAKSMKFTDGFMIHSGQPALDFVDYAVRHVMLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
QGVLGIKVKIM WD +G+ GP PLPD V I P +++ P +
Sbjct: 53 QGVLGIKVKIMKGWDPEGQVGPRKPLPDSVQILEPPLDKIVAEPTS 98
>gi|119598703|gb|EAW78297.1| hCG2022018 [Homo sapiens]
Length = 117
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 74/108 (68%), Gaps = 10/108 (9%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGC KV+ SGKLR QRAKSMKF DG I SG P+N Y+ +AV HVLLR
Sbjct: 1 MESGAKGC--------KVMASGKLRGQRAKSMKFVDGLTIHSGDPINYYVGTAVCHVLLR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
QGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 53 QGVLGIKVKIMLPWDPTGKTGPKKPLPDHVSIVEPKDEIL--PTTPIS 98
>gi|226476716|emb|CAX72250.1| ribosomal protein S3 [Schistosoma japonicum]
Length = 102
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 72/99 (72%), Gaps = 8/99 (8%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGA+G E VIVSGK++ QRAK+MKF DG MI SG PVN Y+D AVRHV L
Sbjct: 1 MESGARGAE--------VIVSGKIKGQRAKAMKFCDGLMIHSGDPVNYYVDKAVRHVQLP 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
QG+LGIKVKIM++ D GK+GP PLPD VTI KEEV
Sbjct: 53 QGILGIKVKIMMDHDSSGKKGPRKPLPDTVTILAAKEEV 91
>gi|429961737|gb|ELA41282.1| hypothetical protein VICG_01655 [Vittaforma corneae ATCC 50505]
Length = 215
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 8/210 (3%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RK++ +G+ AELNE+ + Y+G ++ +I I+ Q +GE ++ +
Sbjct: 7 RKYIQNGLIDAELNELFGKYFQAQIYAGSTIKHNQTPIKISIKVYNPQEAIGENKFKLLQ 66
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
L +++ +RF P N++++ EK+ +RGL AE LR L +R +++
Sbjct: 67 LQNMIGQRFDIPPNNIDIVFEKIADRGLEPAYHAEQLRLAFLQNKPYKRVINSIIKSSRA 126
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA+G + V+GKL+ QRAK++K+ DGY I SG +Y+ SA +QG
Sbjct: 127 AGAQGV--------MIRVAGKLKGQRAKAIKYFDGYFIQSGMAAKDYVRSAKSQAKCKQG 178
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+G++V +ML +D +G G T + D +TI
Sbjct: 179 TIGVQVSVMLPYDPEGVVGSNTIISDRITI 208
>gi|223477921|ref|YP_002582383.1| 30S ribosomal protein S3e (S3p) [Thermococcus sp. AM4]
gi|214033147|gb|EEB73975.1| SSU ribosomal protein S3e (S3p) [Thermococcus sp. AM4]
Length = 209
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G+KV IM P LPD
Sbjct: 174 GVIGVKVAIM---------PPEARLPD 191
>gi|240104054|ref|YP_002960363.1| 30S ribosomal protein S3P [Thermococcus gammatolerans EJ3]
gi|259495259|sp|C5A280.1|RS3_THEGJ RecName: Full=30S ribosomal protein S3
gi|239911608|gb|ACS34499.1| SSU ribosomal protein S3P (rps3P) [Thermococcus gammatolerans EJ3]
Length = 209
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G+KV IM P LPD
Sbjct: 174 GVIGVKVAIMP---------PDARLPD 191
>gi|170060068|ref|XP_001865639.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
gi|167878646|gb|EDS42029.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
Length = 179
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 96/214 (44%), Gaps = 62/214 (28%)
Query: 17 FFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76
FF + LAEDG SGVEVRVTP RTE II A+ + RIREL +V+
Sbjct: 20 FFLRSGSSFSAWLAEDGLSGVEVRVTPTRTEFIIMASAPRTCSARSDHRIRELNAVI--- 76
Query: 77 FKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEF 136
YGVLRFIMES AKG E
Sbjct: 77 -------------------------------------------YGVLRFIMESCAKGYE- 92
Query: 137 NFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
V+VSGKLR QRAKSM F DG MI S P E LRQG LGI+VKI
Sbjct: 93 -------VVVSGKLRGQRAKSMTFVDGMMIHSDDPCKEATP-------LRQGELGIQVKI 138
Query: 197 MLEWDQKGKQGPTTPLPDLV-TIHPLKEEVYVAP 229
+L WD G GP L D V + P E +Y P
Sbjct: 139 VLPWDPNGNIGPKELLSDNVEMVEPKDEIMYNTP 172
>gi|170052166|ref|XP_001862098.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
gi|167873123|gb|EDS36506.1| 40S ribosomal protein S3 [Culex quinquefasciatus]
Length = 181
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 88/177 (49%), Gaps = 52/177 (29%)
Query: 54 RTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL 113
RTQNVLGE RIREL ++ L+AEKV R LCAI QAESL YKL+GGL
Sbjct: 27 RTQNVLGESDHRIRELNAI-------------LFAEKVATRSLCAIVQAESLCYKLIGGL 73
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
AV RACYG F DG + S P N
Sbjct: 74 AVCRACYG--------------------------------------FVDGIIFHSDDPSN 95
Query: 174 EYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLV-TIHPLKEEVYVAP 229
E+ D+A RHVLLR G LG++VKIML WD+ G GP L D V + P + +Y P
Sbjct: 96 EFSDTASRHVLLRHGELGMQVKIMLPWDKNGNIGPKEQLSDNVEMVEPKDKIMYNTP 152
>gi|402584605|gb|EJW78546.1| hypothetical protein WUBG_10543 [Wuchereria bancrofti]
Length = 103
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 69/82 (84%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+SKKRK V DG+F AELN L +ELAEDGYSGVEVR TP R EIII ATRTQ+VLGE+GR
Sbjct: 1 MSKKRKAVQDGIFKAELNNFLMKELAEDGYSGVEVRRTPARAEIIILATRTQSVLGERGR 60
Query: 65 RIRELTSVVQKRFKFPENSVEL 86
RIRELTSVVQKRF F + +VE+
Sbjct: 61 RIRELTSVVQKRFGFADGTVEV 82
>gi|14591528|ref|NP_143610.1| 30S ribosomal protein S3 [Pyrococcus horikoshii OT3]
gi|6647791|sp|O59424.1|RS3_PYRHO RecName: Full=30S ribosomal protein S3
gi|3258205|dbj|BAA30888.1| 210aa long hypothetical 30S ribosomal protein S3 [Pyrococcus
horikoshii OT3]
Length = 210
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P +EEV
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIVEKPAEEEV 204
>gi|409096178|ref|ZP_11216202.1| 30S ribosomal protein S3P [Thermococcus zilligii AN1]
Length = 209
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GR+IR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAADPGYVIGRGGRKIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V++++F +E+ E++ N L A QA L L G+ RRA Y + IM
Sbjct: 64 DLTRVLERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIGAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + +L+
Sbjct: 122 RNGARGVEIRL--------SGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQAVLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
GV+G+KV IM P LPD + I + EE
Sbjct: 174 GVIGVKVSIMP---------PDAKLPDEIGIKEIVEE 201
>gi|312137081|ref|YP_004004418.1| 30S ribosomal protein S3 [Methanothermus fervidus DSM 2088]
gi|311224800|gb|ADP77656.1| SSU ribosomal protein S3P [Methanothermus fervidus DSM 2088]
Length = 217
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 115/211 (54%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+++F+A+ + AE++E L +EL GY G+++++TP+ T I I A R V+G GR +R
Sbjct: 3 EKEFIAESLKRAEIDEFLEKELERAGYGGMDIQLTPLGTMITIYAERPGLVIGRGGRTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LT++++KRF +E+ +V L A + L G+ RR YG LR IM
Sbjct: 63 RLTNILRKRFGLDNPQIEVKEVEVPE--LNPKIMAHRIASMLERGMHFRRVAYGTLRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E + +SGK+R RA S+KF +G++ G+P +++ + L+
Sbjct: 121 AAGAQGAE--------ITISGKIRGARATSVKFTEGHIKKCGEPAEKFVKTGFATAQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GVLG+ VKIM P LPD + I
Sbjct: 173 GVLGVHVKIMP---------PGVKLPDEIKI 194
>gi|57641471|ref|YP_183949.1| 30S ribosomal protein S3 [Thermococcus kodakarensis KOD1]
gi|73918002|sp|Q5JDH5.1|RS3_PYRKO RecName: Full=30S ribosomal protein S3
gi|57159795|dbj|BAD85725.1| SSU ribosomal protein S3P [Thermococcus kodakarensis KOD1]
Length = 209
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++ I A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++K+F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + L+
Sbjct: 122 RNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G+KV IM P LPD
Sbjct: 174 GVIGVKVSIM---------PPDAKLPD 191
>gi|390960788|ref|YP_006424622.1| 30S ribosomal protein S3 [Thermococcus sp. CL1]
gi|390519096|gb|AFL94828.1| 30S ribosomal protein S3P [Thermococcus sp. CL1]
Length = 210
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++ I A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + L+
Sbjct: 122 RNGARGVEIRL--------SGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQAKLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+KV IM P LPD + +
Sbjct: 174 GVIGVKVSIM---------PPDAKLPDEIEV 195
>gi|341582057|ref|YP_004762549.1| 30S ribosomal protein S3P [Thermococcus sp. 4557]
gi|340809715|gb|AEK72872.1| 30S ribosomal protein S3P [Thermococcus sp. 4557]
Length = 210
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++ I A V+G GRRIR
Sbjct: 4 ERYFIKENVRDMLIDEYLEKELRRAGYGGIDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERKFNLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + L+
Sbjct: 122 RNGARGVEIRL--------SGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQARLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLV-TIHPLKEE 224
GV+G+KV IM P LPD + I L EE
Sbjct: 174 GVIGVKVSIM---------PPDAKLPDEIEVIEKLVEE 202
>gi|148807|gb|AAA86865.1| ribosomal protein S3 [Haloarcula marismortui]
Length = 304
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PNAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|55378378|ref|YP_136228.1| 30S ribosomal protein S3 [Haloarcula marismortui ATCC 43049]
gi|448636981|ref|ZP_21675429.1| 30S ribosomal protein S3P [Haloarcula sinaiiensis ATCC 33800]
gi|448648015|ref|ZP_21679493.1| 30S ribosomal protein S3P [Haloarcula californiae ATCC 33799]
gi|57015336|sp|P20281.2|RS3_HALMA RecName: Full=30S ribosomal protein S3; AltName: Full=HS1; AltName:
Full=HmaS3
gi|55231103|gb|AAV46522.1| 30S ribosomal protein S3P [Haloarcula marismortui ATCC 43049]
gi|445765287|gb|EMA16426.1| 30S ribosomal protein S3P [Haloarcula sinaiiensis ATCC 33800]
gi|445775885|gb|EMA26880.1| 30S ribosomal protein S3P [Haloarcula californiae ATCC 33799]
Length = 304
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PNAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|448681469|ref|ZP_21691560.1| 30S ribosomal protein S3P [Haloarcula argentinensis DSM 12282]
gi|445767339|gb|EMA18442.1| 30S ribosomal protein S3P [Haloarcula argentinensis DSM 12282]
Length = 305
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PDAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|388501238|gb|AFK38685.1| unknown [Lotus japonicus]
Length = 78
Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/78 (75%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
MISSGQPV +YIDSAVRHVLLRQGVLGIKVKIML+WD KGKQGP TPLPD+VTIH KEE
Sbjct: 1 MISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 60
Query: 225 VYVAPAT--ATSIELPVA 240
P A IE+PVA
Sbjct: 61 EEYRPVAVLANDIEVPVA 78
>gi|326914668|ref|XP_003203646.1| PREDICTED: 40S ribosomal protein S3-like, partial [Meleagris
gallopavo]
Length = 63
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/63 (92%), Positives = 59/63 (93%)
Query: 55 TQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLA 114
TQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLA
Sbjct: 1 TQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLA 60
Query: 115 VRR 117
VRR
Sbjct: 61 VRR 63
>gi|448671521|ref|ZP_21687426.1| 30S ribosomal protein S3P [Haloarcula amylolytica JCM 13557]
gi|445764983|gb|EMA16123.1| 30S ribosomal protein S3P [Haloarcula amylolytica JCM 13557]
Length = 305
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PDAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|448685266|ref|ZP_21693258.1| 30S ribosomal protein S3P [Haloarcula japonica DSM 6131]
gi|445781877|gb|EMA32728.1| 30S ribosomal protein S3P [Haloarcula japonica DSM 6131]
Length = 310
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PDAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|448630844|ref|ZP_21673299.1| 30S ribosomal protein S3P [Haloarcula vallismortis ATCC 29715]
gi|445755218|gb|EMA06608.1| 30S ribosomal protein S3P [Haloarcula vallismortis ATCC 29715]
Length = 304
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PDAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|448411351|ref|ZP_21575816.1| 30S ribosomal protein S3P [Halosimplex carlsbadense 2-9-1]
gi|445670539|gb|ELZ23138.1| 30S ribosomal protein S3P [Halosimplex carlsbadense 2-9-1]
Length = 319
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G+EV TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFADELGRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTELEERFDLEDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGAKG E +++SGK+ R++ KF GY+ +G+P +D V +
Sbjct: 119 RIMESGAKGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAENIVDHGVGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-EVYVAPATATSIE 236
++ G +G++VKI+ P LPD ++ E E YVA S+E
Sbjct: 171 MKLGTIGVQVKIIP---------PEAELPDDFEVYEDMEVEDYVADVEDESVE 214
>gi|344212407|ref|YP_004796727.1| 30S ribosomal protein S3P [Haloarcula hispanica ATCC 33960]
gi|343783762|gb|AEM57739.1| 30S ribosomal protein S3P [Haloarcula hispanica ATCC 33960]
Length = 304
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PDAELPDDFEIYEDVDVEDYVADTDGESVE 214
>gi|73667656|ref|YP_303671.1| 30S ribosomal protein S3 [Methanosarcina barkeri str. Fusaro]
gi|91207819|sp|Q46GA1.1|RS3_METBF RecName: Full=30S ribosomal protein S3
gi|72394818|gb|AAZ69091.1| SSU ribosomal protein S3P [Methanosarcina barkeri str. Fusaro]
Length = 311
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV DG A ++E +L GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V R+ EN ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVAARYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV+E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
G LG KV+I+ P LPD T
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPDSYT 194
>gi|410722176|ref|ZP_11361485.1| ribosomal protein S3, eukaryotic/archaeal type, partial
[Methanobacterium sp. Maddingley MBC34]
gi|410597412|gb|EKQ52031.1| ribosomal protein S3, eukaryotic/archaeal type, partial
[Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G+E++VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELDRAGYGGMEIQVTPLGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ ++ VE+ ++V+ L A + L G+ RR Y LR IM
Sbjct: 63 AITQNLKNNYELENPQVEV--KEVDIPELNPKIMAHKISAMLQRGMHFRRVAYSALRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF DGY+ G+P +Y+ L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSACAKFTDGYIKKCGEPSIKYVKQGFATAPLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPV 239
GVLGI V+IM P LPD V I K E VA ++E PV
Sbjct: 173 GVLGISVRIM---------PPDVVLPDKVDIIQPKVEEPVASEAVETVEAPV 215
>gi|257387882|ref|YP_003177655.1| 30S ribosomal protein S3 [Halomicrobium mukohataei DSM 12286]
gi|257170189|gb|ACV47948.1| ribosomal protein S3 [Halomicrobium mukohataei DSM 12286]
Length = 317
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 20/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNARIVADRLGNALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GAKG E +++SGK+ R++ KF GY+ +G+P +DS V +
Sbjct: 119 RIMEAGAKGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAENIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-EVYVAPATATSI 235
++ G +G++VKI+ P LPD I+ E E YVA S+
Sbjct: 171 MKLGTIGVRVKIIP---------PEAELPDDFEIYEDVEVEDYVADTDGESV 213
>gi|408381916|ref|ZP_11179463.1| 30S ribosomal protein S3P [Methanobacterium formicicum DSM 3637]
gi|407815364|gb|EKF85949.1| 30S ribosomal protein S3P [Methanobacterium formicicum DSM 3637]
Length = 426
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G+E++VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELDRAGYGGMEIQVTPLGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ ++ VE+ ++V+ L A + L G+ RR Y LR IM
Sbjct: 63 AITQNLKNSYELENPQVEV--KEVDVPELNPKIMAHKISAMLQRGMHFRRVAYSALRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF DGY+ G+P +Y+ L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSACAKFTDGYIKKCGEPSIKYVKQGFATAPLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELP 238
GVLGI V+IM P LPD V I K E V A ++E P
Sbjct: 173 GVLGISVRIM---------PPDVVLPDKVDIIQPKVEEPVESKAAEAVEAP 214
>gi|296109315|ref|YP_003616264.1| 30S ribosomal protein S3 [methanocaldococcus infernus ME]
gi|295434129|gb|ADG13300.1| ribosomal protein S3 [Methanocaldococcus infernus ME]
Length = 211
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 19/218 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E +EL + GYS E++ TP+ T++ I A R V+G +G RI+
Sbjct: 3 ERIFIKENVKKVLIDEFFKKELFKAGYSHCEIKKTPIGTKVTIYAERPGFVIGRRGSRIK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++ K FK +++ + V N L A AE + L G+ RR + +R +M
Sbjct: 63 ELTEILAKEFKLDRPQIDV--KPVENPDLDAQVVAEKIARALERGMHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P + +D L +
Sbjct: 121 NAGAKGV--------VVIISGKLTGERARTEKFMAGYMKHCGEPAEDLVDKGRAIALTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
GV+G+ VKIM P LPD + I EV
Sbjct: 173 GVIGVTVKIMR---------PDVLLPDEIVIKEKDMEV 201
>gi|224154183|ref|XP_002337443.1| predicted protein [Populus trichocarpa]
gi|222839282|gb|EEE77619.1| predicted protein [Populus trichocarpa]
Length = 73
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
KGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 2 KGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 57
>gi|76803063|ref|YP_331158.1| 30S ribosomal protein S3P [Natronomonas pharaonis DSM 2160]
gi|91207821|sp|Q3IMY2.1|RS3_NATPD RecName: Full=30S ribosomal protein S3
gi|76558928|emb|CAI50524.1| 30S ribosomal protein S3 [Natronomonas pharaonis DSM 2160]
Length = 305
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 119/215 (55%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E + EL+ GY G+EV TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +I+SGK+ R++ KF GY+ +G+P +DS V +
Sbjct: 119 RIMESGALGAE--------IILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G++VKI+ P LPD ++
Sbjct: 171 MKLGTIGVQVKIIP---------PEAELPDDFEVY 196
>gi|297619583|ref|YP_003707688.1| 30S ribosomal protein S3 [Methanococcus voltae A3]
gi|297378560|gb|ADI36715.1| ribosomal protein S3 [Methanococcus voltae A3]
Length = 218
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V A +NE ++L + GYS ++V+ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVTNNVSEALINEYFCKKLVKAGYSHIDVKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++ +K +E+ +++ N L + L G+ R+ + +R +M
Sbjct: 63 ELTETLRTVYKIENPQIEV--KQIENADLDPAVVGHKIAASLEKGMHFRKTAHSAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG +IVSGKL +R+++ KF DGYM G+P E + + + L+
Sbjct: 121 NAGAKGVS--------IIVSGKLSGERSRTEKFMDGYMKHCGEPSEELVMKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIML P LPD + I
Sbjct: 173 GVVGVTVKIML---------PDVSLPDEIVI 194
>gi|374630584|ref|ZP_09702969.1| SSU ribosomal protein S3P [Methanoplanus limicola DSM 2279]
gi|373908697|gb|EHQ36801.1| SSU ribosomal protein S3P [Methanoplanus limicola DSM 2279]
Length = 242
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 106/193 (54%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S +++FV DGV A + + L +EL GY G E+ TP+ T++ I A + V+G+ G+
Sbjct: 1 MSVEKRFVEDGVRAARVEKFLVKELKRAGYGGTEIIRTPLGTQVTIFAEKPGIVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+RELTS +Q + +E+ ++V N A AE L L G R+A ++R
Sbjct: 61 VVRELTSTLQNDYGIESPQIEV--QQVENPSFNAQIMAERLANSLERGWYFRKAGSSIMR 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA GCE V+VSGKL RA+ KF +GY+ +G+P ++ +
Sbjct: 119 RIMESGALGCE--------VVVSGKLTGSRARVQKFTEGYIKHAGEPSETIVEHGFAIAV 170
Query: 185 LRQGVLGIKVKIM 197
+ G +G +VKI+
Sbjct: 171 KKLGCIGCQVKIV 183
>gi|15668638|ref|NP_247436.1| 30S ribosomal protein S3 [Methanocaldococcus jannaschii DSM 2661]
gi|1710763|sp|P54034.1|RS3_METJA RecName: Full=30S ribosomal protein S3
gi|1591163|gb|AAB98450.1| SSU ribosomal protein S3P (rpsC) [Methanocaldococcus jannaschii DSM
2661]
Length = 208
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIR
Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K F + +++ + V N L A A+ + L GL RR + +R +M
Sbjct: 63 ELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P E +D +
Sbjct: 121 NAGAKGV--------IVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVIGVTVKIMR---------PDVLLPDEIII 194
>gi|289597187|ref|YP_003483883.1| 30S ribosomal protein S3 [Aciduliprofundum boonei T469]
gi|289534974|gb|ADD09321.1| ribosomal protein S3 [Aciduliprofundum boonei T469]
Length = 237
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 20/213 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV + V + E L +E A G+ G+E++ TP+ T II+ R V+G KG +I+
Sbjct: 3 ERKFVKENVNRLLMKEYLMKETAMAGFGGLEIQRTPLGTRIILEVERPGMVIGRKGAKIK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +Q+ F ++E+ ++ N L A A+ L L G RRA + LR IM
Sbjct: 63 ELTDKLQQDFGVENPTIEV--KESPNPYLNAQIMAQKLAMALERGWHFRRAGHSTLRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GAKG + +I+SGKL RA++ KF DG + +G+PV E + +
Sbjct: 121 EAGAKGAQ--------IIISGKLTGDRARTEKFMDGTIKYNGKPV-ELVRMGYATAKTKP 171
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHP 220
G++G+ VKIM P LPD V I P
Sbjct: 172 GIIGVTVKIMP---------PDAKLPDEVNILP 195
>gi|18978191|ref|NP_579548.1| 30S ribosomal protein S3 [Pyrococcus furiosus DSM 3638]
gi|397652533|ref|YP_006493114.1| 30S ribosomal protein S3 [Pyrococcus furiosus COM1]
gi|27734507|sp|Q8U004.1|RS3_PYRFU RecName: Full=30S ribosomal protein S3
gi|428697931|pdb|3J20|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
gi|18894000|gb|AAL81943.1| SSU ribosomal protein S3P [Pyrococcus furiosus DSM 3638]
gi|393190124|gb|AFN04822.1| 30S ribosomal protein S3P [Pyrococcus furiosus COM1]
Length = 210
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++K+F +E+ E++ N L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIRL--------SGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEV 204
>gi|307354329|ref|YP_003895380.1| 30S ribosomal protein S3 [Methanoplanus petrolearius DSM 11571]
gi|307157562|gb|ADN36942.1| ribosomal protein S3 [Methanoplanus petrolearius DSM 11571]
Length = 241
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R+FV DGV A + + L +EL GY G E+ TP+ T+I I A + V+G+ G+ +R
Sbjct: 4 ERRFVEDGVRAARVEKYLRKELKRAGYGGTEIVRTPLGTQITIYAEKPGIVIGKGGKVVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
E+TS +Q + +E+ ++V N A AE L L G R+A ++R IM
Sbjct: 64 EITSNLQNDYGIESPQIEV--QQVENPAFNAQIMAERLANSLERGWYFRKAGTSIIRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE V++SGKL R++ KF +GY+ +G+P ++ + +
Sbjct: 122 ESGALGCE--------VVISGKLTGARSRVQKFTEGYIKHAGEPSETIVEHGFAIAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G +VKI+ P LPD
Sbjct: 174 GVIGCQVKIVP---------PGAQLPD 191
>gi|242398285|ref|YP_002993709.1| 30S ribosomal protein S3P [Thermococcus sibiricus MM 739]
gi|259495260|sp|C6A165.1|RS3_THESM RecName: Full=30S ribosomal protein S3
gi|242264678|gb|ACS89360.1| 30S ribosomal protein S3P [Thermococcus sibiricus MM 739]
Length = 207
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +G+ ++E L +EL GY G++++ TP+ T+++I R V+G GR+IR
Sbjct: 4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++++RF +E+ E++ N A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 SNGARGVEIR--------ISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GVLG+KV IM P LPD + I P++EEV
Sbjct: 174 GVLGVKVSIM---------PPDARLPDEIEIVEKPIEEEV 204
>gi|282164896|ref|YP_003357281.1| 30S ribosomal protein S3P [Methanocella paludicola SANAE]
gi|282157210|dbj|BAI62298.1| 30S ribosomal protein S3P [Methanocella paludicola SANAE]
Length = 292
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+KFV DG A ++E +L GY G+++ TP+ T+I IRA + ++G+ G+ IR+
Sbjct: 5 KKFVQDGFKKAMIDEFFLEKLERAGYGGMDINRTPMGTQITIRAEKPGMIIGKSGKMIRK 64
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
T + RFK ++ ++ ++V L A A L L G R+A L+ IM+
Sbjct: 65 FTKDLDVRFKM--DNPQIDVQEVKRPELNAQMMATRLANALERGWYFRKAGQSTLQRIMD 122
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
SGA G E ++++GKL R ++ KF GY+ G+PV E++D + G
Sbjct: 123 SGAMGVE--------IVIAGKLTGPRKRTEKFIAGYIKHCGKPVEEFVDVGYARAKKKLG 174
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
++G+KV+IM P + LPD + + P+K+E
Sbjct: 175 IIGVKVRIMP---------PGSVLPDHIEVLPIKKE 201
>gi|20089948|ref|NP_616023.1| 30S ribosomal protein S3 [Methanosarcina acetivorans C2A]
gi|27734505|sp|Q8TRU1.1|RS3_METAC RecName: Full=30S ribosomal protein S3
gi|19914909|gb|AAM04503.1| ribosomal protein S3p [Methanosarcina acetivorans C2A]
Length = 318
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L+ GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V ++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPD 191
>gi|212223217|ref|YP_002306453.1| 30S ribosomal protein S3 [Thermococcus onnurineus NA1]
gi|254764554|sp|B6YSL9.1|RS3_THEON RecName: Full=30S ribosomal protein S3
gi|212008174|gb|ACJ15556.1| SSU ribosomal protein S3P; (rps3P) [Thermococcus onnurineus NA1]
Length = 208
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 21/219 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIR--------ISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEE 224
GV+G+KV IM P LPD + + P++EE
Sbjct: 174 GVIGVKVSIM---------PPDAKLPDEIEVIEKPIQEE 203
>gi|432332005|ref|YP_007250148.1| ribosomal protein S3, eukaryotic/archaeal type [Methanoregula
formicicum SMSP]
gi|432138714|gb|AGB03641.1| ribosomal protein S3, eukaryotic/archaeal type [Methanoregula
formicicum SMSP]
Length = 231
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 26/237 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+A+GV A + + L++EL GY G+++ TP+ T++ I A + V+G+ G+ +
Sbjct: 4 ERKFIAEGVRKARVEKYLSKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVH 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + + +E+ ++VNN A AE L L G R+A +LR +M
Sbjct: 64 QLTQDLAQNYGVESPQIEV--QQVNNPSFNAQIMAERLANALERGWYFRKAGTSILRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE V+++GKL RA++ KF +GY+ G+P N ++ + +
Sbjct: 122 DSGALGCE--------VVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI------HPLKEEVYVAPATATSIELP 238
GV+G++VK++ + LPD ++ P+ + V P + T +E P
Sbjct: 174 GVIGVQVKLVPAGAK---------LPDHFSVVEQEKKRPV-QNASVTPVSDTDVEEP 220
>gi|448726788|ref|ZP_21709180.1| 30S ribosomal protein S3P [Halococcus morrhuae DSM 1307]
gi|445793834|gb|EMA44405.1| 30S ribosomal protein S3P [Halococcus morrhuae DSM 1307]
Length = 370
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 119/215 (55%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E ELA GY G+++ TP+ T+I++RA + V+G+ G+
Sbjct: 1 MATEQQFIEDGMQRTQIDEFFADELARAGYGGMDLAKTPMGTQIVLRAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++TS +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITSELEERFDLDDPQIDV--QEVDEPDLNAQIVADRLGNALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA+G E + ++GK+ R+++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGARGAE--------ITLNGKVTGARSRNEKFNRGYIKHNGEPSQEIVDRGDGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNADLPDDFRIH 196
>gi|452210667|ref|YP_007490781.1| SSU ribosomal protein S3e (S3p) [Methanosarcina mazei Tuc01]
gi|452100569|gb|AGF97509.1| SSU ribosomal protein S3e (S3p) [Methanosarcina mazei Tuc01]
Length = 307
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L GY G+E+ TP+ T+III + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V ++ EN ++ A++V L A A L + G R+A + +R +M
Sbjct: 64 KLTRDVATKYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPD 191
>gi|21228232|ref|NP_634154.1| 30S ribosomal protein S3 [Methanosarcina mazei Go1]
gi|27734502|sp|Q8PV44.1|RS3_METMA RecName: Full=30S ribosomal protein S3
gi|20906688|gb|AAM31826.1| SSU ribosomal protein S3P [Methanosarcina mazei Go1]
Length = 307
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L GY G+E+ TP+ T+III + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V ++ EN ++ A++V L A A L + G R+A + +R +M
Sbjct: 64 KLTRDVATKYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPD 191
>gi|337283650|ref|YP_004623124.1| 30S ribosomal protein S3P [Pyrococcus yayanosii CH1]
gi|334899584|gb|AEH23852.1| 30S ribosomal protein S3P [Pyrococcus yayanosii CH1]
Length = 210
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEYLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT V++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRVLERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIRL--------SGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPEARLPDEIEIIEKPVEEEV 204
>gi|336477155|ref|YP_004616296.1| 30S ribosomal protein S3 [Methanosalsum zhilinae DSM 4017]
gi|335930536|gb|AEH61077.1| ribosomal protein S3 [Methanosalsum zhilinae DSM 4017]
Length = 311
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 27/236 (11%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A +NE ++L+ GY G+++ TP+ T+I I A + V+G+ G+ IR
Sbjct: 4 EKKFVQDGYVKASMNEYFAKQLSRAGYGGMDLNRTPMGTQITIYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V + + ++ ++ A++V N L A A L + G R+A + +R IM
Sbjct: 64 KLTREVDRMYNL--DNPQIDAQEVKNPALNAQIMASRLASSIERGWYFRKAGHNAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +++SGKL R++ K +GY+ +G+PV++ +D + +
Sbjct: 122 GAGALGCE--------IVLSGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDYGFATAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD---LVTIHPLKEEVYV----APATATSIE 236
G +G V+I+ P LPD L+ + P+KEEV A +AT IE
Sbjct: 174 GTIGCVVRIIP---------PGAILPDNFNLIEV-PVKEEVKAESEEAKKSATGIE 219
>gi|429190338|ref|YP_007176016.1| ribosomal protein S3, eukaryotic/archaeal type [Natronobacterium
gregoryi SP2]
gi|448326250|ref|ZP_21515617.1| 30S ribosomal protein S3P [Natronobacterium gregoryi SP2]
gi|429134556|gb|AFZ71567.1| ribosomal protein S3, eukaryotic/archaeal type [Natronobacterium
gregoryi SP2]
gi|445612907|gb|ELY66624.1| 30S ribosomal protein S3P [Natronobacterium gregoryi SP2]
Length = 317
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFDLEDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +GQP E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGQPAEEIVDEGQATAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD +H
Sbjct: 171 MKLGTIGVTVKIIP---------PNAQLPDDFHVH 196
>gi|304314259|ref|YP_003849406.1| 30S ribosomal protein S3P [Methanothermobacter marburgensis str.
Marburg]
gi|302587718|gb|ADL58093.1| 30S ribosomal protein S3P [Methanothermobacter marburgensis str.
Marburg]
Length = 275
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V+VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKSKFNLENPQVEV--KEVDVPELNPRIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ + KF DGY+ G+P +++ V L+
Sbjct: 121 AAGAQGVE--------VTISGKIRGARSATAKFTDGYIKKCGEPSTKHVKEGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
GVLG+ V+IM P LPD V I K
Sbjct: 173 GVLGVYVRIMP---------PEVVLPDKVEIEAPK 198
>gi|269861307|ref|XP_002650365.1| SSU ribosomal protein S3P [Enterocytozoon bieneusi H348]
gi|220066196|gb|EED43690.1| SSU ribosomal protein S3P [Enterocytozoon bieneusi H348]
Length = 214
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 113/210 (53%), Gaps = 10/210 (4%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+ + +G AEL+E+ + ++ Y+G+E+++ +I I+ +L +K ++L
Sbjct: 8 QIIKEGKIKAELDELFGKLFQKETYAGIELKMNQTPIQIFIKVLNPAELLEKKPMIQKQL 67
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+++ +R + + EK+ ++ L AE LR + +R ++R + ++
Sbjct: 68 QNMIAQRLNMIPEHIRIVFEKIIDKALEPAYHAELLRQAFINVQPYKRTINSIIRSVRQA 127
Query: 130 GAKG-CEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
G +G C + VSGK++ QRAK+ KF DG +I +GQP EYI A L +QG
Sbjct: 128 GGQGVC---------IRVSGKIKGQRAKATKFIDGLLIQAGQPAKEYIRKAKAIALCKQG 178
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
V+GI++ IML +D +G +GP+ + D + +
Sbjct: 179 VIGIQISIMLPYDSEGIRGPSELIADKIKV 208
>gi|452206442|ref|YP_007486564.1| 30S ribosomal protein S3 [Natronomonas moolapensis 8.8.11]
gi|452082542|emb|CCQ35800.1| 30S ribosomal protein S3 [Natronomonas moolapensis 8.8.11]
Length = 301
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 118/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E EL+ GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLQRTQIDEFFAEELSRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEDFDLDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM+SGA G E +I+SGK+ R++ KF GY+ +G+P +DS V +
Sbjct: 119 RIMDSGALGAE--------IILSGKVTGARSRVEKFNRGYIKHNGEPAETIVDSGVGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G++VKI+ P LPD ++
Sbjct: 171 MKLGTIGVRVKIIP---------PNAELPDDFEVY 196
>gi|374635645|ref|ZP_09707239.1| ribosomal protein S3 [Methanotorris formicicus Mc-S-70]
gi|373561498|gb|EHP87731.1| ribosomal protein S3 [Methanotorris formicicus Mc-S-70]
Length = 208
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV D + ++E + LA+ GYS +E+R TP+ T+I I A + V+G +G+R++
Sbjct: 3 ERIFVDDNIKEMLIDEYFKKALAKAGYSHMEIRKTPIGTKITIYAEKPGFVIGRRGKRVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++ +K + +E+ + +++ L A+ + L G+ RR + +R +M
Sbjct: 63 ELTETLENTYKVDKPQIEVKS--IDDPNLDPEVVAQKIASSLERGMHFRRVAHAAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G P + A + L+
Sbjct: 121 NAGAKGV--------VVIISGKLTGERARTEKFMAGYMKHCGDPSETLVRKAFKLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD V I
Sbjct: 173 GVIGVTVKIM---------PPDIVLPDEVII 194
>gi|289193197|ref|YP_003459138.1| 30S ribosomal protein S3 [Methanocaldococcus sp. FS406-22]
gi|288939647|gb|ADC70402.1| ribosomal protein S3 [Methanocaldococcus sp. FS406-22]
Length = 207
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +EL+ GYS ++R TP+ T+III A + V+G +G RIR
Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSRAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K F + +++ + V N L A A+ + L GL RR + +R +M
Sbjct: 63 ELTEKLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P E +D +
Sbjct: 121 NAGAKGV--------IVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
G++G+ VKIM P LPD + I
Sbjct: 173 GIIGVTVKIMR---------PDVLLPDEIII 194
>gi|397780850|ref|YP_006545323.1| 30S ribosomal protein S3P [Methanoculleus bourgensis MS2]
gi|396939352|emb|CCJ36607.1| 30S ribosomal protein S3P [Methanoculleus bourgensis MS2]
Length = 234
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KF+++GV + + LT+EL GY G+++ TP+ T+I I A + V+G+ G+++R
Sbjct: 4 EKKFISEGVRNVRVEKFLTKELKRAGYGGMDITRTPLGTQITIFAEKPGIVIGKGGKQVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + F VE+ ++V N A AE L L G R+A +R +M
Sbjct: 64 QLTQDLATHFGIESPQVEV--QQVQNPNFSAQIMAERLANALERGWYFRKAGQSTIRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE VIV+GKL R+++ KF +GY+ SG+P ++ + +
Sbjct: 122 ESGALGCE--------VIVAGKLTGARSRTQKFTEGYVKHSGEPSETIVEKGYALAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G +G++VKI+ P LPD
Sbjct: 174 GTIGVQVKIVP---------PGAKLPD 191
>gi|333910788|ref|YP_004484521.1| 30S ribosomal protein S3 [Methanotorris igneus Kol 5]
gi|333751377|gb|AEF96456.1| ribosomal protein S3 [Methanotorris igneus Kol 5]
Length = 209
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + + ++E + LA+ GYS +E+R TP+ T+I I A + V+G KG+R++
Sbjct: 3 ERVFVEESIKEMLIDEYFKKTLAKAGYSHMEIRKTPIGTKITIYAEKPGFVIGRKGKRVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++K +K N ++ + + + L A+ + L G+ RR + +R +M
Sbjct: 63 ELTETLEKTYKV--NKPQIEVKPIEDPNLDPEVVAQKIATSLERGMHFRRVAHAAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G P + A + L+
Sbjct: 121 NAGAKGV--------VVIISGKLTGERARTEKFMAGYMKHCGDPSETLVRKAFKLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD V I
Sbjct: 173 GVIGVTVKIM---------PPDIVLPDEVII 194
>gi|124484916|ref|YP_001029532.1| 30S ribosomal protein S3P [Methanocorpusculum labreanum Z]
gi|152060873|sp|A2SPK9.1|RS3_METLZ RecName: Full=30S ribosomal protein S3
gi|124362457|gb|ABN06265.1| SSU ribosomal protein S3P [Methanocorpusculum labreanum Z]
Length = 231
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFVADGV + + L +EL GY G+++ TPV T++ I A + V+G+ G+ +R
Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT+ + + VE+ ++V N L A AE L L G R+A V+R +M
Sbjct: 64 QLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE VI++GKL RA+ KF +GY+ SG+P ++ + +
Sbjct: 122 DSGALGCE--------VIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G++G++VKI+ P LPD
Sbjct: 174 GIIGVQVKIVP---------PGAKLPD 191
>gi|383625039|ref|ZP_09949445.1| 30S ribosomal protein S3P [Halobiforma lacisalsi AJ5]
gi|448697495|ref|ZP_21698535.1| 30S ribosomal protein S3P [Halobiforma lacisalsi AJ5]
gi|445781448|gb|EMA32304.1| 30S ribosomal protein S3P [Halobiforma lacisalsi AJ5]
Length = 318
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFDLEDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +GQP E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGQPAEEIVDEGQATAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PDAQLPDDFEIH 196
>gi|435848742|ref|YP_007310992.1| SSU ribosomal protein S3P [Natronococcus occultus SP4]
gi|433675010|gb|AGB39202.1| SSU ribosomal protein S3P [Natronococcus occultus SP4]
Length = 326
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFEEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +GQP E +D +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGQPAEEVVDHGQATAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD +H + V P + E
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPDDFQVHDEMDPEEVVPDAVEANE 213
>gi|126178520|ref|YP_001046485.1| 30S ribosomal protein S3P [Methanoculleus marisnigri JR1]
gi|152060874|sp|A3CT03.1|RS3_METMJ RecName: Full=30S ribosomal protein S3
gi|125861314|gb|ABN56503.1| SSU ribosomal protein S3P [Methanoculleus marisnigri JR1]
Length = 234
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KF+ DGV + + LT+EL GY G+++ TP+ T++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + VE+ ++V N A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE VIV+GKL R+++ KF +GY+ G+P ++ + +
Sbjct: 122 ESGALGCE--------VIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
G +G++VKI+ P LPD + L+ E APA
Sbjct: 174 GTIGVQVKIVP---------PDARLPDAFDV--LEPEPKKAPA 205
>gi|448704122|ref|ZP_21700603.1| 30S ribosomal protein S3P [Halobiforma nitratireducens JCM 10879]
gi|445796511|gb|EMA47015.1| 30S ribosomal protein S3P [Halobiforma nitratireducens JCM 10879]
Length = 320
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFDLEDPQVDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +GQP E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGQPAEEIVDEGQATAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD +H
Sbjct: 171 MKLGTIGVTVKIIP---------PNAQLPDDFHVH 196
>gi|448737868|ref|ZP_21719901.1| 30S ribosomal protein S3P [Halococcus thailandensis JCM 13552]
gi|445802830|gb|EMA53131.1| 30S ribosomal protein S3P [Halococcus thailandensis JCM 13552]
Length = 383
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 119/215 (55%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E ELA GY G+++ TP+ T+I++RA + V+G+ G+
Sbjct: 1 MATEQEFIEDGMQRTQIDEFFADELARAGYGGMDLAKTPMGTQIVLRAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++TS +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITSELEERFDLDDPQIDV--QEVDEPDLNAQIVADRLGNALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA+G E + ++GK+ R+++ KF GY+ +G+P + +D +
Sbjct: 119 RIMDAGARGAE--------ITLNGKVTGARSRNEKFNRGYIKHNGEPSQDIVDRGDGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNADLPDDFRIH 196
>gi|383319759|ref|YP_005380600.1| 30S ribosomal protein S3 [Methanocella conradii HZ254]
gi|379321129|gb|AFD00082.1| SSU ribosomal protein S3P [Methanocella conradii HZ254]
Length = 280
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L GY G+E+ TP+ T+I I+A + ++G+ G+ IR
Sbjct: 4 EKKFVQDGFKKAMIDEFFLEKLERAGYGGMEINRTPMGTQITIKAEKPGMIIGKSGKMIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+ T + RFK ++ ++ ++V L A A L L G R+A L+ IM
Sbjct: 64 KFTRDLDVRFKM--DNPQIDVQEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA G E ++++GKL R ++ KF GY+ G+PV ++ID +
Sbjct: 122 DAGAMGVE--------IVIAGKLTGPRKRTEKFIAGYIKHCGKPVEQFIDVGYARAKKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
GV+G+KV+IM P T LPD + I P ++E
Sbjct: 174 GVIGVKVRIMP---------PGTVLPDHIEIVPPQKE 201
>gi|389853111|ref|YP_006355345.1| 30S ribosomal protein S3 [Pyrococcus sp. ST04]
gi|388250417|gb|AFK23270.1| rpsC, small subunit ribosomal protein S3 [Pyrococcus sp. ST04]
Length = 210
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 23/227 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT +++ +F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 QLTRILESQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIR--------LSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEVYVAPATA 232
GV+G+KV IM P LPD + I P++EE VAP A
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIIEKPVEEE--VAPNEA 209
>gi|315229862|ref|YP_004070298.1| 30S ribosomal protein S3e (S3p) [Thermococcus barophilus MP]
gi|315182890|gb|ADT83075.1| SSU ribosomal protein S3e (S3p) [Thermococcus barophilus MP]
Length = 207
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIRL--------SGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I PL+EEV
Sbjct: 174 GVIGVKVAIM---------PPEARLPDEIEIIEKPLEEEV 204
>gi|88603493|ref|YP_503671.1| 30S ribosomal protein S3 [Methanospirillum hungatei JF-1]
gi|121731027|sp|Q2FT39.1|RS3_METHJ RecName: Full=30S ribosomal protein S3
gi|88188955|gb|ABD41952.1| SSU ribosomal protein S3P [Methanospirillum hungatei JF-1]
Length = 237
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFVADGV + L EL GY G+++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LT + + +E+ ++V+N L A AE L L G R+A LR IM
Sbjct: 64 TLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE V++SGKL R + KF +GY+ SG PVN +D + +
Sbjct: 122 DSGALGCE--------VVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G++V+++ P LPD
Sbjct: 174 GVIGVQVRLIP---------PGAQLPD 191
>gi|257053365|ref|YP_003131198.1| 30S ribosomal protein S3P [Halorhabdus utahensis DSM 12940]
gi|256692128|gb|ACV12465.1| ribosomal protein S3 [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 122/233 (52%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADELQFIQDGIQRTQIDEFFEDELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGAKG E +++SGK+ R++ KF GY+ +G+P + +D +
Sbjct: 119 RIMESGAKGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEDIVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-EVYVAPATATSIE 236
++ G +G+ VKI+ P LPD I+ E E YV S+E
Sbjct: 171 MKLGTIGVDVKIIP---------PNAELPDDFEIYEDVEVEDYVEDVEEGSVE 214
>gi|355571377|ref|ZP_09042629.1| ribosomal protein S3 [Methanolinea tarda NOBI-1]
gi|354825765|gb|EHF09987.1| ribosomal protein S3 [Methanolinea tarda NOBI-1]
Length = 239
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 108/190 (56%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFVA+G A + + L +EL GY G++++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVAEGARRARVEKHLKKELKRAGYGGMDLQRTPLGTQVTIFAEKPGIVIGKGGKLVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + F +E+ ++V N A AE L L G R+A ++R +M
Sbjct: 64 QLTQDLATDFAVESPQIEV--QQVPNPNFNAQIMAERLANALERGWYFRKAGQSIIRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA GCE VI++GKL RA+ KF +GY+ SG+PVN ++ + +
Sbjct: 122 DAGALGCE--------VIIAGKLTGARARVQKFTEGYIKHSGEPVNTIVEKGYAVAVKKL 173
Query: 188 GVLGIKVKIM 197
GV+G++VKI+
Sbjct: 174 GVIGVQVKII 183
>gi|432328995|ref|YP_007247139.1| ribosomal protein S3, eukaryotic/archaeal type [Aciduliprofundum
sp. MAR08-339]
gi|432135704|gb|AGB04973.1| ribosomal protein S3, eukaryotic/archaeal type [Aciduliprofundum
sp. MAR08-339]
Length = 239
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 20/217 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV + V + E L +E A G+ G+E++ TP+ T I++ R V+G KG +I+
Sbjct: 3 ERKFVKESVNRLLMKEYLMKETAMAGFGGLEIQRTPLGTRIVLEVERPGMVIGRKGAKIK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +Q+ F ++E+ ++ +N L A A+ L L G RRA + LR IM
Sbjct: 63 ELTDRLQQDFGVENPTIEV--KESDNPYLNAQIMAQKLAMALERGWHFRRAGHSTLRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GAKG + +I++GKL RA++ KF G + +G+PV E + +
Sbjct: 121 EAGAKGAQ--------IIIAGKLTGDRARTEKFMAGTIKYNGKPV-ELVRFGYATAKTKP 171
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
G++G+ VKIM P LPD + I P EE
Sbjct: 172 GIIGVTVKIMP---------PDAKLPDEINIIPPSEE 199
>gi|15678039|ref|NP_275153.1| 30S ribosomal protein S3 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6094177|sp|O26116.1|RS3_METTH RecName: Full=30S ribosomal protein S3
gi|2621055|gb|AAB84528.1| ribosomal protein S3 (E.coli ) [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 258
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V+VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ + KF DGY+ G+P +++ V L+
Sbjct: 121 AAGAQGVE--------VTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
GVLG+ V+IM P LPD V I
Sbjct: 173 GVLGVYVRIMP---------PDVVLPDKVEIE 195
>gi|152060913|sp|A1RXG6.2|RS3_THEPD RecName: Full=30S ribosomal protein S3
Length = 202
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 10/189 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RK ++ G+ + LNE L R+L Y + TP+ T++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ V+++ F +++ +V N+ L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA+G E +++SGKL +QR ++ KF GY+ SG+P E +D A+ HVLL+ G
Sbjct: 124 AGARGAE--------IVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLG 175
Query: 189 VLGIKVKIM 197
+ G+KV+IM
Sbjct: 176 MYGVKVRIM 184
>gi|332158018|ref|YP_004423297.1| 30S ribosomal protein S3P [Pyrococcus sp. NA2]
gi|331033481|gb|AEC51293.1| 30S ribosomal protein S3P [Pyrococcus sp. NA2]
Length = 210
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++K+F +++ +++ N L A QA + L G+ RRA Y +R IM
Sbjct: 64 ELTRILEKQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIRL--------SGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIIEKPVEEEV 204
>gi|379994267|gb|AFD22760.1| 40S ribosomal protein S3, partial [Collodictyon triciliatum]
Length = 100
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 146 VSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
VSGKLRAQRAK MKF+DGYMI SG P Y+DSAVRHV++RQGVLG++V IML WD G+
Sbjct: 4 VSGKLRAQRAKVMKFRDGYMIKSGNPTKVYVDSAVRHVMMRQGVLGVRVSIMLPWDPTGR 63
Query: 206 QGPTTPLPDLVTI 218
G P D++TI
Sbjct: 64 NGVKIPQADVITI 76
>gi|261402351|ref|YP_003246575.1| 30S ribosomal protein S3 [Methanocaldococcus vulcanius M7]
gi|261369344|gb|ACX72093.1| ribosomal protein S3 [Methanocaldococcus vulcanius M7]
Length = 206
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + + ++E +EL+ GYS +R TP+ T+III A + V+G +G RIR
Sbjct: 3 ERTFVKEHIKEFLIDEYFKKELSRAGYSHCYIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K F + +++ + V N L A A+ + L G+ RR + +R +M
Sbjct: 63 ELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGMHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P E +D +
Sbjct: 121 NAGAKGV--------IVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGSAIAKTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVIGVTVKIMR---------PDVLLPDEIII 194
>gi|294880038|ref|XP_002768878.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239871826|gb|EER01596.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 106
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/60 (85%), Positives = 57/60 (95%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q+SKKRKFVADGVF+AELNE+LT LAEDGYSGVEVRVTP++TEIIIRATRT+ VLGEKG
Sbjct: 9 QVSKKRKFVADGVFYAELNELLTTILAEDGYSGVEVRVTPIKTEIIIRATRTREVLGEKG 68
>gi|288560114|ref|YP_003423600.1| 30S ribosomal protein S3 [Methanobrevibacter ruminantium M1]
gi|288542824|gb|ADC46708.1| ribosomal protein S3P Rps3p [Methanobrevibacter ruminantium M1]
Length = 251
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G+E++VTP+ T +I+ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLRRTRIDEYLEKELERAGYGGMEIQVTPLGTMVIVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ +F VE+ V L A A + L G+ RR Y +R IM
Sbjct: 63 AITQSLKTKFDLDNPQVEVKEVAVPE--LNARIMASKIANMLQRGMHFRRVAYSTIRKIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF +GY+ G+P ++ L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSAVAKFTEGYIKKCGEPATRFVTEGFATAPLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GVLGI V+IM P LPD V I
Sbjct: 173 GVLGIVVRIMP---------PEATLPDKVDI 194
>gi|448350187|ref|ZP_21539006.1| 30S ribosomal protein S3P [Natrialba taiwanensis DSM 12281]
gi|445637694|gb|ELY90842.1| 30S ribosomal protein S3P [Natrialba taiwanensis DSM 12281]
Length = 328
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFDLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAAEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFEIH 196
>gi|335437506|ref|ZP_08560282.1| 30S ribosomal protein S3P [Halorhabdus tiamatea SARL4B]
gi|335438903|ref|ZP_08561634.1| 30S ribosomal protein S3P [Halorhabdus tiamatea SARL4B]
gi|334890174|gb|EGM28448.1| 30S ribosomal protein S3P [Halorhabdus tiamatea SARL4B]
gi|334895854|gb|EGM34017.1| 30S ribosomal protein S3P [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E EL GY G+EV TP+ T+I++ A + V+G+ G+
Sbjct: 1 MADELQFIEDGLQRTQIDEFFEDELGRAGYGGMEVAKTPMGTQIVLEAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + V++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGAKG E +++SGK+ R++ KF GY+ +G+P + +D +
Sbjct: 119 RIMESGAKGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEDIVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE-EVYVAPATATSIE 236
++ G +G+ VKI+ P LPD I+ E E YV S+E
Sbjct: 171 MKLGTIGVDVKIIP---------PEAELPDDFEIYEDVEVEDYVEDVEEGSVE 214
>gi|14520552|ref|NP_126027.1| 30S ribosomal protein S3P [Pyrococcus abyssi GE5]
gi|17367830|sp|Q9V1U1.1|RS3_PYRAB RecName: Full=30S ribosomal protein S3
gi|5457768|emb|CAB49258.1| rps3P SSU ribosomal protein S3P [Pyrococcus abyssi GE5]
gi|380741079|tpe|CCE69713.1| TPA: 30S ribosomal protein S3P [Pyrococcus abyssi GE5]
Length = 210
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 SNGARGVEIR--------ISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIIEKPVEEEV 204
>gi|432092120|gb|ELK24807.1| 40S ribosomal protein S3 [Myotis davidii]
Length = 133
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 69/108 (63%), Gaps = 10/108 (9%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
ME GA GCE V+VSGKL+ QRA S+K DG MI SG PVN Y+D+AV H L R
Sbjct: 1 MERGADGCE--------VVVSGKLQGQRAASVKVVDGLMIRSGDPVNCYVDTAVHHGLPR 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
+G LGIKVKI L WD GK+GP P PD V+ K+E+ P+T S
Sbjct: 53 RGGLGIKVKITLPWDPGGKRGPKKPPPDCVSTVEPKDEIL--PSTPIS 98
>gi|448352603|ref|ZP_21541385.1| 30S ribosomal protein S3P [Natrialba hulunbeirensis JCM 10989]
gi|445642165|gb|ELY95235.1| 30S ribosomal protein S3P [Natrialba hulunbeirensis JCM 10989]
Length = 330
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEIVDEGQGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFQIH 196
>gi|448475304|ref|ZP_21603022.1| 30S ribosomal protein S3P [Halorubrum aidingense JCM 13560]
gi|445816775|gb|EMA66662.1| 30S ribosomal protein S3P [Halorubrum aidingense JCM 13560]
Length = 313
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 19/227 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++TS ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITSELEDRFGMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPAT 231
++ G +G+ VKI+ P LPD I E V AT
Sbjct: 171 MKLGTIGVTVKIIP---------PGAKLPDDFDIREDAEVPEVEQAT 208
>gi|375083288|ref|ZP_09730314.1| 30S ribosomal protein S3P [Thermococcus litoralis DSM 5473]
gi|374742019|gb|EHR78431.1| 30S ribosomal protein S3P [Thermococcus litoralis DSM 5473]
Length = 207
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + + ++E L +EL GY G++++ TP+ T+++I A R V+G GR+IR
Sbjct: 4 ERYFIKESIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFAERPGFVIGRGGRKIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYFNAKVQATRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIR--------ISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GVLG+KV IM P LPD + I P++EEV
Sbjct: 174 GVLGVKVSIM---------PPDARLPDEIEIIEKPVEEEV 204
>gi|448358810|ref|ZP_21547484.1| 30S ribosomal protein S3P [Natrialba chahannaoensis JCM 10990]
gi|445644490|gb|ELY97503.1| 30S ribosomal protein S3P [Natrialba chahannaoensis JCM 10990]
Length = 329
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEIVDEGQGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFQIH 196
>gi|289579904|ref|YP_003478370.1| 30S ribosomal protein S3 [Natrialba magadii ATCC 43099]
gi|448281144|ref|ZP_21472452.1| 30S ribosomal protein S3P [Natrialba magadii ATCC 43099]
gi|289529457|gb|ADD03808.1| ribosomal protein S3 [Natrialba magadii ATCC 43099]
gi|445579468|gb|ELY33862.1| 30S ribosomal protein S3P [Natrialba magadii ATCC 43099]
Length = 335
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEIVDEGQGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFQIH 196
>gi|448369933|ref|ZP_21556386.1| 30S ribosomal protein S3P [Natrialba aegyptia DSM 13077]
gi|445650373|gb|ELZ03297.1| 30S ribosomal protein S3P [Natrialba aegyptia DSM 13077]
Length = 328
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFDLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAAEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFEIH 196
>gi|448362298|ref|ZP_21550909.1| 30S ribosomal protein S3P [Natrialba asiatica DSM 12278]
gi|445648819|gb|ELZ01767.1| 30S ribosomal protein S3P [Natrialba asiatica DSM 12278]
Length = 326
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 117/215 (54%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFDLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAAEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVTVKIIP---------PNAELPDDFEIH 196
>gi|448503706|ref|ZP_21613335.1| 30S ribosomal protein S3P [Halorubrum coriense DSM 10284]
gi|445691907|gb|ELZ44090.1| 30S ribosomal protein S3P [Halorubrum coriense DSM 10284]
Length = 312
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 116/214 (54%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEERFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPDDFEI 195
>gi|448441443|ref|ZP_21589106.1| 30S ribosomal protein S3P [Halorubrum saccharovorum DSM 1137]
gi|445688852|gb|ELZ41099.1| 30S ribosomal protein S3P [Halorubrum saccharovorum DSM 1137]
Length = 312
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGAQLPDDFDI 195
>gi|134045220|ref|YP_001096706.1| 30S ribosomal protein S3P [Methanococcus maripaludis C5]
gi|189045017|sp|A4FWB6.1|RS3_METM5 RecName: Full=30S ribosomal protein S3
gi|132662845|gb|ABO34491.1| SSU ribosomal protein S3P [Methanococcus maripaludis C5]
Length = 211
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K + +E+ ++V N L + L G+ RR + +R +M
Sbjct: 63 ELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGVS--------IIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD +TI
Sbjct: 173 GVVGVTVKIM---------KPDVTLPDEITI 194
>gi|448426501|ref|ZP_21583350.1| 30S ribosomal protein S3P [Halorubrum terrestre JCM 10247]
gi|448452129|ref|ZP_21593149.1| 30S ribosomal protein S3P [Halorubrum litoreum JCM 13561]
gi|448484340|ref|ZP_21606047.1| 30S ribosomal protein S3P [Halorubrum arcis JCM 13916]
gi|445679381|gb|ELZ31848.1| 30S ribosomal protein S3P [Halorubrum terrestre JCM 10247]
gi|445809773|gb|EMA59811.1| 30S ribosomal protein S3P [Halorubrum litoreum JCM 13561]
gi|445820115|gb|EMA69944.1| 30S ribosomal protein S3P [Halorubrum arcis JCM 13916]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEERFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPD 191
>gi|448463236|ref|ZP_21598014.1| 30S ribosomal protein S3P [Halorubrum kocurii JCM 14978]
gi|445817231|gb|EMA67107.1| 30S ribosomal protein S3P [Halorubrum kocurii JCM 14978]
Length = 312
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGAKLPDDFDI 195
>gi|448460071|ref|ZP_21596991.1| 30S ribosomal protein S3P [Halorubrum lipolyticum DSM 21995]
gi|445807789|gb|EMA57870.1| 30S ribosomal protein S3P [Halorubrum lipolyticum DSM 21995]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGAQLPDDFDI 195
>gi|448535702|ref|ZP_21622222.1| 30S ribosomal protein S3P [Halorubrum hochstenium ATCC 700873]
gi|445703203|gb|ELZ55138.1| 30S ribosomal protein S3P [Halorubrum hochstenium ATCC 700873]
Length = 312
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPD 191
>gi|448489446|ref|ZP_21607669.1| 30S ribosomal protein S3P [Halorubrum californiensis DSM 19288]
gi|445694818|gb|ELZ46936.1| 30S ribosomal protein S3P [Halorubrum californiensis DSM 19288]
Length = 313
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEERFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPD 191
>gi|222480851|ref|YP_002567088.1| 30S ribosomal protein S3P [Halorubrum lacusprofundi ATCC 49239]
gi|222453753|gb|ACM58018.1| ribosomal protein S3 [Halorubrum lacusprofundi ATCC 49239]
Length = 312
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGAQLPDDFDI 195
>gi|448508622|ref|ZP_21615573.1| 30S ribosomal protein S3P [Halorubrum distributum JCM 9100]
gi|448517695|ref|ZP_21617269.1| 30S ribosomal protein S3P [Halorubrum distributum JCM 10118]
gi|445697248|gb|ELZ49318.1| 30S ribosomal protein S3P [Halorubrum distributum JCM 9100]
gi|445705910|gb|ELZ57798.1| 30S ribosomal protein S3P [Halorubrum distributum JCM 10118]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEERFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPD 191
>gi|262401161|gb|ACY66483.1| putative 40S ribosomal protein RPS3 [Scylla paramamosain]
Length = 66
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 8/74 (10%)
Query: 107 YKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMI 166
YKL+GGLAVRRACYGVL FIMESGAKGCE V+VSGKLR QRAKSMKF DG MI
Sbjct: 1 YKLVGGLAVRRACYGVLCFIMESGAKGCE--------VVVSGKLRGQRAKSMKFTDGLMI 52
Query: 167 SSGQPVNEYIDSAV 180
SG+P Y+D+AV
Sbjct: 53 HSGEPRRHYVDAAV 66
>gi|448436258|ref|ZP_21587059.1| 30S ribosomal protein S3P [Halorubrum tebenquichense DSM 14210]
gi|445682926|gb|ELZ35336.1| 30S ribosomal protein S3P [Halorubrum tebenquichense DSM 14210]
Length = 312
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++NE EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLRRSQINEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFDMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVNVKIIP---------PGATLPD 191
>gi|147919328|ref|YP_686936.1| 30S ribosomal protein S3P [Methanocella arvoryzae MRE50]
gi|121687826|sp|Q0W1Y3.1|RS3_UNCMA RecName: Full=30S ribosomal protein S3
gi|110622332|emb|CAJ37610.1| 30S ribosomal protein S3P [Methanocella arvoryzae MRE50]
Length = 279
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E +L GY G+E+ TP+ T+I ++A + ++G+ G+ IR
Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
T + RFK +++ ++V L A A L L G R+A L+ IM
Sbjct: 64 RYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE VI++GKL R + KF GY+ G+PV E +D +
Sbjct: 122 DSGAMGCE--------VIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
G++G+KV+IM P LPD +TI
Sbjct: 174 GIIGVKVRIMP---------PEAVLPDQITIE 196
>gi|256810641|ref|YP_003128010.1| 30S ribosomal protein S3 [Methanocaldococcus fervens AG86]
gi|256793841|gb|ACV24510.1| ribosomal protein S3 [Methanocaldococcus fervens AG86]
Length = 207
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + ++E +EL+ GYS ++R TP+ T+I I A + V+G +G RIR
Sbjct: 3 ERTFVKENTTKLLIDEYFKKELSRAGYSHCDIRKTPIGTKITIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + F + +++ + V N L A A+ + L GL RR + +R +M
Sbjct: 63 ELTKTLAEEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P E +D +
Sbjct: 121 NAGAKGV--------IVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVIGVTVKIMR---------PDVLLPDEIII 194
>gi|170033439|ref|XP_001844585.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167874323|gb|EDS37706.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 258
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 99/210 (47%), Gaps = 67/210 (31%)
Query: 29 LAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88
LA GY GVE VTP R+EIII TRTQN+LGEK IRELT++VQK
Sbjct: 101 LAAVGYFGVEFHVTPNRSEIII-TTRTQNMLGEKRHSIRELTAIVQK------------- 146
Query: 89 EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSG 148
L+GGL+V ACY V+ ++SGAKG E
Sbjct: 147 --------------------LIGGLSVCGACYDVV--AVDSGAKGFEAVLF--------- 175
Query: 149 KLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGP 208
P NEY D+ RHVLLR VL I+VKI+L+W+ GK G
Sbjct: 176 ---------------------DPCNEYFDTITRHVLLRLEVLEIQVKIILQWEPNGKIGQ 214
Query: 209 TTPLPDLVTIHPLKEEV-YVAPATATSIEL 237
PL V + ++E+ Y P + +++EL
Sbjct: 215 KEPLQHNVLVVEQRDEIMYNTPRSMSALEL 244
>gi|148642816|ref|YP_001273329.1| 30S ribosomal protein S3P [Methanobrevibacter smithii ATCC 35061]
gi|222445047|ref|ZP_03607562.1| hypothetical protein METSMIALI_00664 [Methanobrevibacter smithii
DSM 2375]
gi|261350384|ref|ZP_05975801.1| ribosomal protein S3 [Methanobrevibacter smithii DSM 2374]
gi|172048064|sp|A5UL83.1|RS3_METS3 RecName: Full=30S ribosomal protein S3
gi|148551833|gb|ABQ86961.1| ribosomal protein S3p [Methanobrevibacter smithii ATCC 35061]
gi|222434612|gb|EEE41777.1| ribosomal protein S3 [Methanobrevibacter smithii DSM 2375]
gi|288861167|gb|EFC93465.1| ribosomal protein S3 [Methanobrevibacter smithii DSM 2374]
Length = 250
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T+ ++ F +E+ ++V+ L A + L G+ RR Y +R IM
Sbjct: 63 AITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF +GY+ G+P ++ V L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
GVLGI V+IM P T LPD V I P K
Sbjct: 173 GVLGIYVRIM---------PPETVLPDSVEILPPK 198
>gi|345005649|ref|YP_004808502.1| 30S ribosomal protein S3 [halophilic archaeon DL31]
gi|344321275|gb|AEN06129.1| ribosomal protein S3 [halophilic archaeon DL31]
Length = 312
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 119/219 (54%), Gaps = 19/219 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ ++KF+ DG+ ++++E EL GY G+++ TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQKFIEDGLQRSQIDEFFADELGRAGYGGMDIAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR+++S +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVSSELEERFGMDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+ME+GA G E +++SGK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RMMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQTVVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
++ G +G+ VK++ GP LPD I+ E
Sbjct: 171 MKLGTIGVNVKVI---------GPDAVLPDDFEIYETDE 200
>gi|154150081|ref|YP_001403699.1| 30S ribosomal protein S3 [Methanoregula boonei 6A8]
gi|171769709|sp|A7I5P5.1|RS3_METB6 RecName: Full=30S ribosomal protein S3
gi|153998633|gb|ABS55056.1| ribosomal protein S3 [Methanoregula boonei 6A8]
Length = 231
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ +
Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVH 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + + +E+ ++V N A AE L L G R+A ++R +M
Sbjct: 64 QLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE V+++GKL RA++ KF +GY+ G+P N ++ + +
Sbjct: 122 DSGALGCE--------VVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKL 173
Query: 188 GVLGIKVKIM 197
GV+G++VKI+
Sbjct: 174 GVIGVQVKIV 183
>gi|9967236|dbj|BAB12320.1| hypothetical protein [Macaca fascicularis]
Length = 83
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Query: 48 IIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRY 107
+II ATRT+N+LGEKGR IRELT+VVQK F FPE SVELYA+KV RG IAQAESLRY
Sbjct: 1 MIILATRTENILGEKGRWIRELTAVVQKTFGFPEGSVELYADKVATRGR-DIAQAESLRY 59
Query: 108 KLLGGLAVRRA 118
K LGGLAVRRA
Sbjct: 60 KFLGGLAVRRA 70
>gi|300710381|ref|YP_003736195.1| 30S ribosomal protein S3P [Halalkalicoccus jeotgali B3]
gi|448294705|ref|ZP_21484784.1| 30S ribosomal protein S3P [Halalkalicoccus jeotgali B3]
gi|299124064|gb|ADJ14403.1| 30S ribosomal protein S3P [Halalkalicoccus jeotgali B3]
gi|445586382|gb|ELY40664.1| 30S ribosomal protein S3P [Halalkalicoccus jeotgali B3]
Length = 302
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 123/232 (53%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G+EV TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGMQRSQIDEFFATELERAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRQLEERFDLEDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P + +D + +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEDIVDKGLGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD IH E + TA + E
Sbjct: 171 MKLGTIGVNVKIIP---------PGAQLPDDFEIHDDAEVEDLIAETADTDE 213
>gi|284165498|ref|YP_003403777.1| 30S ribosomal protein S3 [Haloterrigena turkmenica DSM 5511]
gi|284015153|gb|ADB61104.1| ribosomal protein S3 [Haloterrigena turkmenica DSM 5511]
Length = 317
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPDDFEIH 196
>gi|395644922|ref|ZP_10432782.1| ribosomal protein S3 [Methanofollis liminatans DSM 4140]
gi|395441662|gb|EJG06419.1| ribosomal protein S3 [Methanofollis liminatans DSM 4140]
Length = 236
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV++GV + E L+REL GY G+++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVSEGVTRVRVEEYLSRELKRAGYGGMDIVRTPMGTQVTIFAEKPGIVIGKGGKLVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + F VE+ ++V N + A AE L L G R+A +R +M
Sbjct: 64 QLTQDLSTNFNLESPQVEV--QQVANPSVNAQIMAERLATALERGWYFRKAGQSTMRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE +++SGKL R++ KF +GY+ G+P ++ + +
Sbjct: 122 ESGALGCE--------IVLSGKLTGARSRVQKFLEGYVKHCGEPSITIVEKGYAIAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
G++G++VKI + D K LPD + P K P +A ++E
Sbjct: 174 GIIGVQVKI-IPGDAK--------LPDRFEVLPPK------PYSAETVE 207
>gi|448323157|ref|ZP_21512621.1| 30S ribosomal protein S3P [Natronococcus amylolyticus DSM 10524]
gi|445600343|gb|ELY54356.1| 30S ribosomal protein S3P [Natronococcus amylolyticus DSM 10524]
Length = 313
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFEEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM+SGA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDSGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD +H + V P + E
Sbjct: 171 MKLGTIGVDVKIIP---------PGAKLPDDFQVHDEMDPEEVVPDAVEANE 213
>gi|91772089|ref|YP_564781.1| 30S ribosomal protein S3P [Methanococcoides burtonii DSM 6242]
gi|121687004|sp|Q12ZU5.1|RS3_METBU RecName: Full=30S ribosomal protein S3
gi|91711104|gb|ABE51031.1| SSU ribosomal protein S3P [Methanococcoides burtonii DSM 6242]
Length = 304
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E ++L+ GY G+++ TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V + + ++ ++ A++V L A A L + G R+A + +R +M
Sbjct: 64 KLTRDVDRLYDL--DNPQIDAQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +++SGKL R++ K +GY+ +G+PV++ +D + +
Sbjct: 122 NAGALGCE--------IVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIH---------PDAVLPD 191
>gi|84489702|ref|YP_447934.1| 30S ribosomal protein S3P [Methanosphaera stadtmanae DSM 3091]
gi|121729293|sp|Q2NFW2.1|RS3_METST RecName: Full=30S ribosomal protein S3
gi|84373021|gb|ABC57291.1| 30S ribosomal protein S3P [Methanosphaera stadtmanae DSM 3091]
Length = 252
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +L GY G++++VTPV T +I+ A + V+G G+ +R
Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM
Sbjct: 63 AITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF +GY+ G+P +Y+ V L+
Sbjct: 121 SAGAQGVE--------VTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GVLGI V+IM P LPD + I
Sbjct: 173 GVLGIYVRIM---------PPEVTLPDNIEI 194
>gi|325958537|ref|YP_004290003.1| 30S ribosomal protein S3 [Methanobacterium sp. AL-21]
gi|325329969|gb|ADZ09031.1| ribosomal protein S3 [Methanobacterium sp. AL-21]
Length = 299
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L EL GY G+E++VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLENELERAGYGGMEIQVTPLGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ + VE+ ++V+ L A + L G+ RR Y LR IM
Sbjct: 63 SITQNLKTGYGLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTALRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF DGY+ G+P ++ V L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSACAKFSDGYIKKCGEPSIRFVRHGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GVLGI V+IM P LPD V I
Sbjct: 173 GVLGINVRIMP---------PDVVLPDKVDI 194
>gi|298674796|ref|YP_003726546.1| 30S ribosomal protein S3 [Methanohalobium evestigatum Z-7303]
gi|298287784|gb|ADI73750.1| ribosomal protein S3 [Methanohalobium evestigatum Z-7303]
Length = 307
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+ KFV DG A L+E ++L GY G+E+ TP+ T+I I A + V+G+ G+ IR
Sbjct: 4 ENKFVTDGYVKASLDEYFAKQLNRAGYGGMEINRTPMGTQITIYAEKPGMVIGKGGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V K + ++ ++ A++V L A A L + G R+A + +R IM
Sbjct: 64 KLTRDVDKLYNM--DNPQIDAQEVKTPELNAQMMATRLAASIERGWYFRKAGHNAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +I+SGKL RA+ K GY+ +G+PV++ +D + +
Sbjct: 122 GAGALGCE--------IIMSGKLTGPRARVEKLVRGYIKHAGKPVDDIVDEGFATAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G +G KV+I+ P LPD
Sbjct: 174 GTIGCKVRIIH---------PDAVLPD 191
>gi|294496011|ref|YP_003542504.1| 30S ribosomal protein S3P [Methanohalophilus mahii DSM 5219]
gi|292667010|gb|ADE36859.1| SSU ribosomal protein S3P [Methanohalophilus mahii DSM 5219]
Length = 314
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 21/224 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A L+E +L+ GY G+E+ TP+ T+I++ + + V+G+ G+ IR
Sbjct: 4 EKKFVEDGFVKASLDEYFANQLSRAGYGGMEINRTPMGTQIVVYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V + + ++ ++ A++V L A A L + G R+A + +R IM
Sbjct: 64 KLTRDVGRLYNL--DNPQIDAQEVKRPELNAQMMATRLASSIERGWYFRKAGHNAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGA GCE +I+SGK+ R++ K +GY+ +G+PV++ +D + +
Sbjct: 122 NSGALGCE--------IILSGKVTGARSRVEKMVNGYIKHAGKPVDDIVDEGFAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVY--VAP 229
G +G KV+I+ P LPD + + EE VAP
Sbjct: 174 GTIGCKVRIIH---------PGAVLPDSYHLKEIVEEAVAEVAP 208
>gi|110668735|ref|YP_658546.1| 30S ribosomal protein S3P [Haloquadratum walsbyi DSM 16790]
gi|385804235|ref|YP_005840635.1| 30S ribosomal protein S3 [Haloquadratum walsbyi C23]
gi|121689634|sp|Q18GF5.1|RS3_HALWD RecName: Full=30S ribosomal protein S3
gi|109626482|emb|CAJ52943.1| 30S ribosomal protein S3 [Haloquadratum walsbyi DSM 16790]
gi|339729727|emb|CCC41005.1| 30S ribosomal protein S3 [Haloquadratum walsbyi C23]
Length = 323
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 22/225 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
I+ESGA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIIESGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
++ G +G+ VKI+ P LPD IH ++V V P
Sbjct: 171 MKLGTIGVTVKIIP---------PGAELPDDFEIH---DDVDVEP 203
>gi|150401811|ref|YP_001325577.1| 30S ribosomal protein S3 [Methanococcus aeolicus Nankai-3]
gi|171460867|sp|A6UWU3.1|RS3_META3 RecName: Full=30S ribosomal protein S3
gi|150014514|gb|ABR56965.1| ribosomal protein S3 [Methanococcus aeolicus Nankai-3]
Length = 208
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + ++ N ++ +++ + L A A+ + L G+ RR + +R +M
Sbjct: 63 ELTETIATKYGV--NKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
GAKG VIVSGKL +R+++ K+ +GYM G+P E +D + L+
Sbjct: 121 AQGAKGV--------VVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVVGVTVKIM---------PPEITLPDEIVI 194
>gi|448298471|ref|ZP_21488500.1| 30S ribosomal protein S3P [Natronorubrum tibetense GA33]
gi|445591667|gb|ELY45868.1| 30S ribosomal protein S3P [Natronorubrum tibetense GA33]
Length = 323
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD +H + + P + E
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPDDFGVHEDMDPAEIVPDAVEANE 213
>gi|336252434|ref|YP_004595541.1| 30S ribosomal protein S3 [Halopiger xanaduensis SH-6]
gi|335336423|gb|AEH35662.1| ribosomal protein S3 [Halopiger xanaduensis SH-6]
Length = 320
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ +G+ ++++E EL GY G+EV TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEQQFIENGLQRSQIDEFFQEELGRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEIVDEGQATAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGAELPD 191
>gi|448311974|ref|ZP_21501727.1| 30S ribosomal protein S3P [Natronolimnobius innermongolicus JCM
12255]
gi|445603595|gb|ELY57557.1| 30S ribosomal protein S3P [Natronolimnobius innermongolicus JCM
12255]
Length = 315
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 116/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEQFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD +H
Sbjct: 171 MKLGTIGVNVKIIP---------PGAELPDDFGVH 196
>gi|448392355|ref|ZP_21567129.1| 30S ribosomal protein S3P [Haloterrigena salina JCM 13891]
gi|445664445|gb|ELZ17154.1| 30S ribosomal protein S3P [Haloterrigena salina JCM 13891]
Length = 318
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 115/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD IH
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPDDFEIH 196
>gi|219851113|ref|YP_002465545.1| 30S ribosomal protein S3 [Methanosphaerula palustris E1-9c]
gi|219545372|gb|ACL15822.1| ribosomal protein S3 [Methanosphaerula palustris E1-9c]
Length = 234
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFVA+GV + L R+L GY G+++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVAEGVRKVRVERFLLRDLKRAGYGGMDIARTPLGTQVTIYAEKPGIVIGKGGKVVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + +E+ ++V N A AE L L G R+A V+R +M
Sbjct: 64 QLTQDLATTYGIESPQIEV--QQVQNPNYNAQIMAERLANALERGWYFRKAGSNVVRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE V++SGKL RA+ KF +GY+ SG+P ++ + +
Sbjct: 122 ESGALGCE--------VVLSGKLTGARARVQKFTEGYIKHSGEPSITIVEKGYAIAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
G +G++VKI+ P LPD I +K
Sbjct: 174 GTIGVQVKIIP---------PDAKLPDQFEILDVK 199
>gi|409731018|ref|ZP_11272568.1| 30S ribosomal protein S3P [Halococcus hamelinensis 100A6]
gi|448724776|ref|ZP_21707281.1| 30S ribosomal protein S3P [Halococcus hamelinensis 100A6]
gi|445784985|gb|EMA35781.1| 30S ribosomal protein S3P [Halococcus hamelinensis 100A6]
Length = 366
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 124/232 (53%), Gaps = 22/232 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G+E+ TP+ T+I++RA + V+G+ G+
Sbjct: 1 MATEQQFIEDGMQRTQIDEFFAEELGRAGYGGMELAKTPMGTQIVLRAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTELEERFDLDDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA+G E + ++GK+ R++ KF GY+ +G+P + +D +
Sbjct: 119 RIMDAGARGAE--------ITLNGKVTGARSRDEKFNRGYIKHNGEPSKDIVDRGNGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ V+I+ P LPD I +E+V V+ IE
Sbjct: 171 MKLGTIGVTVRIIP---------PNAELPDDFRI---REDVDVSDLVPEDIE 210
>gi|410670345|ref|YP_006922716.1| 30S ribosomal protein S3P [Methanolobus psychrophilus R15]
gi|409169473|gb|AFV23348.1| 30S ribosomal protein S3P [Methanolobus psychrophilus R15]
Length = 310
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E ++L + GY G+E+ TP+ T+I I A + V+G+ G+ IR
Sbjct: 4 EKKFVQEGYVKASMDEYFAKQLNKAGYGGMELNRTPMGTQITIYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + + ++ ++ A++V L A A L + G R+A + +R IM
Sbjct: 64 KLTRDIDRMYDI--DNPQIDAQEVRRPELNAQMMATRLASSIERGWYFRKAGHNTIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +++SGKL R++ K GY+ +G+PV++ +D + +
Sbjct: 122 NAGALGCE--------IVISGKLTGARSRVEKIVQGYIKHAGKPVDDIVDEGFAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATAT 233
G LG KV+I+ P LPD + + EE V A +
Sbjct: 174 GTLGCKVRIIP---------PGAVLPDSFHLKDIAEEPKVEAAVVS 210
>gi|433638927|ref|YP_007284687.1| ribosomal protein S3, eukaryotic/archaeal type [Halovivax ruber
XH-70]
gi|433290731|gb|AGB16554.1| ribosomal protein S3, eukaryotic/archaeal type [Halovivax ruber
XH-70]
Length = 314
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 115/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLRRSQIDEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P +E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPADEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|116755010|ref|YP_844128.1| 30S ribosomal protein S3P [Methanosaeta thermophila PT]
gi|121694870|sp|A0B9W4.1|RS3_METTP RecName: Full=30S ribosomal protein S3
gi|116666461|gb|ABK15488.1| SSU ribosomal protein S3P [Methanosaeta thermophila PT]
Length = 276
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E L +EL GY G+ + TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT +++RF+ ++ ++ + V L A A L L G R+A +LR +M
Sbjct: 64 KLTRDLERRFRL--DNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE +++SGKL R++ KF GY+ SG+P E +D+ + +
Sbjct: 122 DSGALGCE--------IVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
G +G +V+I+ P LPD I+
Sbjct: 174 GAIGCQVRIVP---------PGAVLPDDFQIN 196
>gi|435852132|ref|YP_007313718.1| ribosomal protein S3, eukaryotic/archaeal type
[Methanomethylovorans hollandica DSM 15978]
gi|433662762|gb|AGB50188.1| ribosomal protein S3, eukaryotic/archaeal type
[Methanomethylovorans hollandica DSM 15978]
Length = 304
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A L+E ++L GY G+EV TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVHEGYVKASLDEYFAKQLNRAGYGGMEVNRTPMGTQITVYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + + ++ ++ A++V L A A L + G R+A + +R IM
Sbjct: 64 KLTRDIDRMYDL--DNPQIDAQEVRRPELNAQMMATRLASSIERGWYFRKAGHNAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +++SGKL R++S K GY+ +G+P + +D + +
Sbjct: 122 NAGALGCE--------IVISGKLTGSRSRSEKIVQGYIKHAGKPAEDIVDEGFAVAVKKL 173
Query: 188 GVLGIKVKIM 197
G LG KV+I+
Sbjct: 174 GTLGCKVRII 183
>gi|448377812|ref|ZP_21560508.1| 30S ribosomal protein S3P [Halovivax asiaticus JCM 14624]
gi|445655756|gb|ELZ08601.1| 30S ribosomal protein S3P [Halovivax asiaticus JCM 14624]
Length = 314
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLRRSQIDEFFADELGRAGYGGMDVAQTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEDRFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P +E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPADEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|15790638|ref|NP_280462.1| 30S ribosomal protein S3 [Halobacterium sp. NRC-1]
gi|169236377|ref|YP_001689577.1| 30S ribosomal protein S3P [Halobacterium salinarum R1]
gi|21264507|sp|P15009.3|RS3_HALSA RecName: Full=30S ribosomal protein S3; AltName: Full=HHAS3;
AltName: Full=HS4
gi|2425182|dbj|BAA22276.1| ribosomal protein S3 [Halobacterium salinarum]
gi|10581165|gb|AAG19942.1| 30S ribosomal protein S3P [Halobacterium sp. NRC-1]
gi|167727443|emb|CAP14231.1| 30S ribosomal protein S3 [Halobacterium salinarum R1]
Length = 302
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ G+ ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R + KF GY+ +G+P E +D +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PNAELPDDFEIQ 196
>gi|150402573|ref|YP_001329867.1| 30S ribosomal protein S3P [Methanococcus maripaludis C7]
gi|189045018|sp|A6VGZ0.1|RS3_METM7 RecName: Full=30S ribosomal protein S3
gi|150033603|gb|ABR65716.1| ribosomal protein S3 [Methanococcus maripaludis C7]
Length = 211
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + N+ ++ ++V + L + L G+ R+ + +R +M
Sbjct: 63 ELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGV--------SIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD +TI
Sbjct: 173 GVVGVTVKIM---------KPDVSLPDEITI 194
>gi|448592785|ref|ZP_21651832.1| 30S ribosomal protein S3P [Haloferax elongans ATCC BAA-1513]
gi|445730811|gb|ELZ82398.1| 30S ribosomal protein S3P [Haloferax elongans ATCC BAA-1513]
Length = 300
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLQKSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIM 197
++ G +G+ VKI+
Sbjct: 171 MKLGTIGVTVKII 183
>gi|330508492|ref|YP_004384920.1| 30S ribosomal protein S3P [Methanosaeta concilii GP6]
gi|328929300|gb|AEB69102.1| ribosomal protein S3P [Methanosaeta concilii GP6]
Length = 278
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 108/193 (55%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S ++KFVA+G+ A +NE L EL GY G+++ TP+ T+I + A + V+G+ G+
Sbjct: 1 MSVEKKFVAEGITKALVNEYLADELERAGYGGMQMNRTPMGTQITVYAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T + +RF ++ ++ + V L A L L G R+A ++R
Sbjct: 61 LIRKITRDLDRRFHL--DNPQIDVQDVGRGDLNGRVVANRLASSLERGWYFRKAGQSMMR 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+M++GA GCE +++SGKL R+++ KF GY+ SG+P + +D +
Sbjct: 119 RVMDAGALGCE--------IVISGKLTGPRSRTEKFIAGYIKHSGKPAIDLVDRGYSVAV 170
Query: 185 LRQGVLGIKVKIM 197
+ GV+G +V+I+
Sbjct: 171 KKLGVIGCQVRII 183
>gi|448578195|ref|ZP_21643630.1| 30S ribosomal protein S3P [Haloferax larsenii JCM 13917]
gi|445726736|gb|ELZ78352.1| 30S ribosomal protein S3P [Haloferax larsenii JCM 13917]
Length = 298
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLQKSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIM 197
++ G +G+ VKI+
Sbjct: 171 MKLGTIGVTVKII 183
>gi|159905652|ref|YP_001549314.1| 30S ribosomal protein S3P [Methanococcus maripaludis C6]
gi|226697730|sp|A9A9Q9.1|RS3_METM6 RecName: Full=30S ribosomal protein S3
gi|159887145|gb|ABX02082.1| ribosomal protein S3 [Methanococcus maripaludis C6]
Length = 211
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + N+ ++ ++V + L + L G+ R+ + +R +M
Sbjct: 63 ELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGV--------AIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD +TI
Sbjct: 173 GVVGVTVKIM---------KPDVSLPDEITI 194
>gi|313125796|ref|YP_004036066.1| 30S ribosomal protein S3 [Halogeometricum borinquense DSM 11551]
gi|448285635|ref|ZP_21476876.1| 30S ribosomal protein S3P [Halogeometricum borinquense DSM 11551]
gi|312292161|gb|ADQ66621.1| SSU ribosomal protein S3P [Halogeometricum borinquense DSM 11551]
gi|445576271|gb|ELY30728.1| 30S ribosomal protein S3P [Halogeometricum borinquense DSM 11551]
Length = 310
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 119/225 (52%), Gaps = 22/225 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTKALETRFNLEDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
++ G +G+ VKI+ P LPD I +E+ V P
Sbjct: 171 MKLGTIGVTVKIIP---------PGAKLPDDFEI---EEDADVEP 203
>gi|448399316|ref|ZP_21570618.1| 30S ribosomal protein S3P [Haloterrigena limicola JCM 13563]
gi|445669223|gb|ELZ21836.1| 30S ribosomal protein S3P [Haloterrigena limicola JCM 13563]
Length = 310
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 113/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|399577352|ref|ZP_10771105.1| rps3 protein [Halogranum salarium B-1]
gi|399237735|gb|EJN58666.1| rps3 protein [Halogranum salarium B-1]
Length = 309
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLQKSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +Q+RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITRELQERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E ++++GK+ R++ KF GY+ +G+P + +D +
Sbjct: 119 RIMDAGALGAE--------IVLAGKVTGARSRIEKFNRGYIKHNGEPADTVVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVTVKIIP---------PGAQLPDDFAI 195
>gi|333987673|ref|YP_004520280.1| 30S ribosomal protein S3 [Methanobacterium sp. SWAN-1]
gi|333825817|gb|AEG18479.1| ribosomal protein S3 [Methanobacterium sp. SWAN-1]
Length = 315
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 19/215 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +L GY G+E++VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLETQLERAGYGGMEIQVTPLGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ + EN ++ ++V L A + L G+ RR Y LR IM
Sbjct: 63 SITQNLKNDYGL-ENP-QVEVKEVEVPELNPKIMAHKIANMLQRGMHFRRVAYTALRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF DGY+ G+P N+++ V L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSACSKFTDGYIKKCGEPANKHVRKGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
GVLGI V+IM P LPD V I ++
Sbjct: 173 GVLGIYVRIMP---------PGILLPDKVDIKDIE 198
>gi|448345591|ref|ZP_21534480.1| 30S ribosomal protein S3P [Natrinema altunense JCM 12890]
gi|445633524|gb|ELY86711.1| 30S ribosomal protein S3P [Natrinema altunense JCM 12890]
Length = 312
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEDRFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|397773837|ref|YP_006541383.1| ribosomal protein S3 [Natrinema sp. J7-2]
gi|448341384|ref|ZP_21530345.1| 30S ribosomal protein S3P [Natrinema gari JCM 14663]
gi|397682930|gb|AFO57307.1| ribosomal protein S3 [Natrinema sp. J7-2]
gi|445628066|gb|ELY81377.1| 30S ribosomal protein S3P [Natrinema gari JCM 14663]
Length = 312
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEDRFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|354610531|ref|ZP_09028487.1| ribosomal protein S3 [Halobacterium sp. DL1]
gi|353195351|gb|EHB60853.1| ribosomal protein S3 [Halobacterium sp. DL1]
Length = 323
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ G+ ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+
Sbjct: 1 MADEMQFIEQGLQRSQIDEFFATELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R + KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVSVKIIP---------PNAKLPDDFEIQ 196
>gi|448338128|ref|ZP_21527180.1| 30S ribosomal protein S3P [Natrinema pallidum DSM 3751]
gi|445623303|gb|ELY76725.1| 30S ribosomal protein S3P [Natrinema pallidum DSM 3751]
Length = 314
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEDRFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|448309700|ref|ZP_21499556.1| 30S ribosomal protein S3P [Natronorubrum bangense JCM 10635]
gi|445589557|gb|ELY43787.1| 30S ribosomal protein S3P [Natronorubrum bangense JCM 10635]
Length = 308
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD ++ + V P + E
Sbjct: 171 MKLGTIGVNVKIIP---------PGAKLPDDFAVYEDMDPEEVVPDAVEANE 213
>gi|448730383|ref|ZP_21712691.1| 30S ribosomal protein S3P [Halococcus saccharolyticus DSM 5350]
gi|445793551|gb|EMA44123.1| 30S ribosomal protein S3P [Halococcus saccharolyticus DSM 5350]
Length = 372
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+ ++ F+ DG+ +++E EL GY G+E+ TP+ T+I++RA + V+G+ G+
Sbjct: 1 MGSEQTFIEDGMQRTQIDEFFGDELERAGYGGMELAKTPMGTQIVLRAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTQLEERFDLDDPQIDV--QEVDEPDLNAQIVADRLGNALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA+G E + ++GK+ R+++ KF GY+ +G+P +D +
Sbjct: 119 RIMDAGARGAE--------ITLNGKVTGARSRNEKFNRGYIKHNGEPAQSIVDRGDGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVTVKIIP---------PDAELPDDFRIQ 196
>gi|119719404|ref|YP_919899.1| ribosomal protein S3 [Thermofilum pendens Hrk 5]
gi|119524524|gb|ABL77896.1| SSU ribosomal protein S3P [Thermofilum pendens Hrk 5]
Length = 187
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
LNE L R+L Y + TP+ T++I+ A V+G KG I+ + V+++ F
Sbjct: 3 LNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIE 62
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+++ +V N+ L A A + L+ G+ RRA L IM +GA+G E
Sbjct: 63 NPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAE----- 115
Query: 141 SSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
+++SGKL +QR ++ KF GY+ SG+P E +D A+ HVLL+ G+ G+KV+IM
Sbjct: 116 ---IVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 169
>gi|424812835|ref|ZP_18238075.1| ribosomal protein S3, eukaryotic/archaeal type [Candidatus
Nanosalinarum sp. J07AB56]
gi|339757057|gb|EGQ40640.1| ribosomal protein S3, eukaryotic/archaeal type [Candidatus
Nanosalinarum sp. J07AB56]
Length = 366
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 14/196 (7%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QI ++++FV G+ L++ L +EL GY+G + TP T+I+I A + ++G G
Sbjct: 17 QIVQEKQFVQQGIRRVNLDDFLAKELEGSGYAGSTIERTPTSTKIVITAEKPGLIIGRGG 76
Query: 64 RRIRELTSVVQKRFKFPENSVELY--AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
RIRELTS V+ F F + +E+ E +N + A AE L G + +R Y
Sbjct: 77 SRIRELTSDVEDEFGFEDPQIEVNEIEEPDSNAQVVANNMAEWLEK----GGSAKRVGYT 132
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
LR + E+G ++ +++ VSGKL R ++ KF GY+ G +E +D R
Sbjct: 133 YLRRVRETG--------VIGAQIEVSGKLSGNRGRTEKFSFGYVKRCGDTADEQVDRGYR 184
Query: 182 HVLLRQGVLGIKVKIM 197
+ G +G+KV+IM
Sbjct: 185 LARTKPGAIGVKVRIM 200
>gi|322372162|ref|ZP_08046703.1| 30S ribosomal protein S3P [Haladaptatus paucihalophilus DX253]
gi|320548171|gb|EFW89844.1| 30S ribosomal protein S3P [Haladaptatus paucihalophilus DX253]
Length = 320
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 113/214 (52%), Gaps = 19/214 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIEDGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T + +RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITRELGERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM+SGA G E +++SGK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RIMDSGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQTIVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVDVKIIP---------PGADLPDDFQI 195
>gi|448315118|ref|ZP_21504771.1| 30S ribosomal protein S3P [Natronococcus jeotgali DSM 18795]
gi|445612377|gb|ELY66103.1| 30S ribosomal protein S3P [Natronococcus jeotgali DSM 18795]
Length = 295
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 115/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFEEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++++F + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEEKFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM+SGA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDSGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I+
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPDDFQIN 196
>gi|448302872|ref|ZP_21492822.1| 30S ribosomal protein S3P [Natronorubrum sulfidifaciens JCM 14089]
gi|445593879|gb|ELY48046.1| 30S ribosomal protein S3P [Natronorubrum sulfidifaciens JCM 14089]
Length = 313
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 19/232 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ +F + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEDKFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAEEVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
++ G +G+ VKI+ P LPD ++ + V P + E
Sbjct: 171 MKLGTIGVNVKIIP---------PGAELPDDFAVYEDMDPEEVVPDAVEANE 213
>gi|15897617|ref|NP_342222.1| 30S ribosomal protein S3 [Sulfolobus solfataricus P2]
gi|284174942|ref|ZP_06388911.1| 30S ribosomal protein S3P [Sulfolobus solfataricus 98/2]
gi|384434231|ref|YP_005643589.1| 30S ribosomal protein S3 [Sulfolobus solfataricus 98/2]
gi|11134364|sp|Q9UXA0.1|RS3_SULSO RecName: Full=30S ribosomal protein S3
gi|6015765|emb|CAB57592.1| ribosomal protein S3 (HMAS3) [Sulfolobus solfataricus P2]
gi|13813882|gb|AAK41012.1| SSU ribosomal protein S3AB (rps3AB) [Sulfolobus solfataricus P2]
gi|261602385|gb|ACX91988.1| ribosomal protein S3 [Sulfolobus solfataricus 98/2]
Length = 229
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 14/208 (6%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ + +++E L ++ Y+GVEV TP+ T +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L + +K F EN ++ V N L A A L L G RRA + +R IM
Sbjct: 65 QLAQIFEKVFGL-ENP-QITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E +I+SGKL +RA+ K K+G + SGQ + + ID A+ +L+
Sbjct: 123 NAGALGAE--------IIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKP 174
Query: 188 GVLGIKVKIM----LEWDQKGKQGPTTP 211
G+ G++V I +E K+ P+ P
Sbjct: 175 GIFGVEVVITKPLKIEDKINLKESPSVP 202
>gi|52550170|gb|AAU84019.1| SSU ribosomal protein S3p [uncultured archaeon GZfos35D7]
Length = 359
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV G+ A ++E +++L GY+G+++ TP+ T+I I A + V+G+ G+ +R
Sbjct: 4 ERKFVQQGLNRARMSEYFSKQLERAGYAGMQINRTPMGTQITIFAEKPGMVIGKGGKSVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LTS + + +++ V L A A + L G R+A + LR IM
Sbjct: 64 NLTSDLNNFYDLDNPQIDVQGVGVPE--LNAQLMASRIASALERGWYFRKAAHSTLRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GC ++++SGKL R++ K +GY++ +G+P E + + + +
Sbjct: 122 GAGALGC--------RIVLSGKLTGPRSRIEKIVEGYIVHAGKPAEEIVHTGFATAVRKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
G +G K++I+L P T LPD+ +
Sbjct: 174 GTIGCKIQIVL---------PDTTLPDVFNL 195
>gi|448583476|ref|ZP_21646832.1| 30S ribosomal protein S3P [Haloferax gibbonsii ATCC 33959]
gi|445729705|gb|ELZ81300.1| 30S ribosomal protein S3P [Haloferax gibbonsii ATCC 33959]
Length = 302
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGAKLPD 191
>gi|448565521|ref|ZP_21636388.1| 30S ribosomal protein S3P [Haloferax prahovense DSM 18310]
gi|445715265|gb|ELZ67021.1| 30S ribosomal protein S3P [Haloferax prahovense DSM 18310]
Length = 303
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGAKLPD 191
>gi|448611741|ref|ZP_21662171.1| 30S ribosomal protein S3P [Haloferax mucosum ATCC BAA-1512]
gi|445742502|gb|ELZ93996.1| 30S ribosomal protein S3P [Haloferax mucosum ATCC BAA-1512]
Length = 299
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGAKLPD 191
>gi|45358967|ref|NP_988524.1| 30S ribosomal protein S3P [Methanococcus maripaludis S2]
gi|340624714|ref|YP_004743167.1| 30S ribosomal protein S3 [Methanococcus maripaludis X1]
gi|61215571|sp|Q6LXE7.1|RS3_METMP RecName: Full=30S ribosomal protein S3
gi|45047833|emb|CAF30960.1| SSU ribosomal protein S3P [Methanococcus maripaludis S2]
gi|339904982|gb|AEK20424.1| 30S ribosomal protein S3P [Methanococcus maripaludis X1]
Length = 211
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++ + TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + +E+ ++V N L + L G+ R+ + +R +M
Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGV--------AIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
G++G+ VKIM P LPD + I
Sbjct: 173 GIVGVTVKIMR---------PDVSLPDEIVI 194
>gi|389848011|ref|YP_006350250.1| 30S ribosomal protein S3 [Haloferax mediterranei ATCC 33500]
gi|448618108|ref|ZP_21666453.1| 30S ribosomal protein S3P [Haloferax mediterranei ATCC 33500]
gi|388245317|gb|AFK20263.1| 30S ribosomal protein S3P [Haloferax mediterranei ATCC 33500]
gi|445747663|gb|ELZ99118.1| 30S ribosomal protein S3P [Haloferax mediterranei ATCC 33500]
Length = 300
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGAQLPD 191
>gi|448545980|ref|ZP_21626307.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-646]
gi|448548054|ref|ZP_21627398.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-645]
gi|448557077|ref|ZP_21632512.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-644]
gi|445703326|gb|ELZ55257.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-646]
gi|445714756|gb|ELZ66514.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-645]
gi|445714946|gb|ELZ66703.1| 30S ribosomal protein S3P [Haloferax sp. ATCC BAA-644]
Length = 302
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIM 197
++ G +G+ VKI+
Sbjct: 171 MKLGTIGVTVKII 183
>gi|386001179|ref|YP_005919478.1| 30S ribosomal protein S3 [Methanosaeta harundinacea 6Ac]
gi|357209235|gb|AET63855.1| 30S ribosomal protein S3P [Methanosaeta harundinacea 6Ac]
Length = 302
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E L++EL+ GY G+ + TP+ +I + A + V+G+ G+ IR
Sbjct: 4 EKKFVEDGFTKALVHEYLSKELSRAGYGGMTMNRTPMGIQITVYAEKPGMVIGKGGKLIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + F+ ++ ++ + V L A A L L G R+A LR +M
Sbjct: 64 KLTRDLDRNFRL--DNPQIDVQDVGKAELNAQVVANRLASSLERGWYFRKAGQTTLRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE +I+SGKL R++ KF GY+ SG+P E +D + +
Sbjct: 122 ESGALGCE--------IILSGKLTGPRSRVEKFLSGYVKHSGKPSQEIVDHGYAVAVKKL 173
Query: 188 GVLGIKVKIM 197
G +G +V+I+
Sbjct: 174 GTIGCQVRIV 183
>gi|433420031|ref|ZP_20405417.1| 30S ribosomal protein S3P [Haloferax sp. BAB2207]
gi|432199288|gb|ELK55479.1| 30S ribosomal protein S3P [Haloferax sp. BAB2207]
Length = 303
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIM 197
++ G +G+ VKI+
Sbjct: 171 MKLGTIGVTVKII 183
>gi|448569076|ref|ZP_21638488.1| 30S ribosomal protein S3P [Haloferax lucentense DSM 14919]
gi|448600505|ref|ZP_21656001.1| 30S ribosomal protein S3P [Haloferax alexandrinus JCM 10717]
gi|445725226|gb|ELZ76851.1| 30S ribosomal protein S3P [Haloferax lucentense DSM 14919]
gi|445735222|gb|ELZ86774.1| 30S ribosomal protein S3P [Haloferax alexandrinus JCM 10717]
Length = 303
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGARLPD 191
>gi|292656679|ref|YP_003536576.1| 30S ribosomal protein S3 [Haloferax volcanii DS2]
gi|448290683|ref|ZP_21481829.1| 30S ribosomal protein S3P [Haloferax volcanii DS2]
gi|291370935|gb|ADE03162.1| ribosomal protein S3 [Haloferax volcanii DS2]
gi|445578054|gb|ELY32469.1| 30S ribosomal protein S3P [Haloferax volcanii DS2]
Length = 304
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGARLPD 191
>gi|65051|emb|CAA24702.1| ribosomal protein S1 [Xenopus laevis]
Length = 125
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 51/65 (78%)
Query: 154 RAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
RAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML D GK GP PLP
Sbjct: 19 RAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPKDPSGKIGPKKPLP 78
Query: 214 DLVTI 218
D V +
Sbjct: 79 DHVAL 83
>gi|448606201|ref|ZP_21658780.1| 30S ribosomal protein S3P [Haloferax sulfurifontis ATCC BAA-897]
gi|445739618|gb|ELZ91125.1| 30S ribosomal protein S3P [Haloferax sulfurifontis ATCC BAA-897]
Length = 302
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIM 197
++ G +G+ VKI+
Sbjct: 171 MKLGTIGVTVKII 183
>gi|448623086|ref|ZP_21669735.1| 30S ribosomal protein S3P [Haloferax denitrificans ATCC 35960]
gi|445753594|gb|EMA05011.1| 30S ribosomal protein S3P [Haloferax denitrificans ATCC 35960]
Length = 303
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEERFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIMDAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVTVKIIP---------PGARLPD 191
>gi|350588289|ref|XP_003357250.2| PREDICTED: hypothetical protein LOC100627821 [Sus scrofa]
Length = 203
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 51/57 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQN 57
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEII+ ATR Q+
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIMLATRNQS 57
>gi|448329365|ref|ZP_21518665.1| 30S ribosomal protein S3P [Natrinema versiforme JCM 10478]
gi|445614104|gb|ELY67785.1| 30S ribosomal protein S3P [Natrinema versiforme JCM 10478]
Length = 322
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTALEERFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAETVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|448386095|ref|ZP_21564303.1| 30S ribosomal protein S3P [Haloterrigena thermotolerans DSM 11522]
gi|445655993|gb|ELZ08835.1| 30S ribosomal protein S3P [Haloterrigena thermotolerans DSM 11522]
Length = 312
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTTLEERFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAETVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|433590200|ref|YP_007279696.1| ribosomal protein S3, eukaryotic/archaeal type [Natrinema
pellirubrum DSM 15624]
gi|448332394|ref|ZP_21521638.1| 30S ribosomal protein S3P [Natrinema pellirubrum DSM 15624]
gi|433304980|gb|AGB30792.1| ribosomal protein S3, eukaryotic/archaeal type [Natrinema
pellirubrum DSM 15624]
gi|445627498|gb|ELY80822.1| 30S ribosomal protein S3P [Natrinema pellirubrum DSM 15624]
Length = 316
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 112/210 (53%), Gaps = 19/210 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G
Sbjct: 1 MADEHQFIENGLQRSQIDEFFQEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGE 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKVTTTLEERFNLEDPQIDV--QEVEEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IME+GA G E +++SGK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RIMEAGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAETVVDHGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
++ G +G+ VKI+ P LPD
Sbjct: 171 MKLGTIGVDVKIIP---------PGAELPD 191
>gi|448735129|ref|ZP_21717346.1| 30S ribosomal protein S3P [Halococcus salifodinae DSM 8989]
gi|445798742|gb|EMA49133.1| 30S ribosomal protein S3P [Halococcus salifodinae DSM 8989]
Length = 372
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+ ++ F+ DG+ +++E EL GY G+++ TP+ T+I++RA + V+G+ G+
Sbjct: 1 MGSEQTFIEDGMQRTQIDEFFGDELERAGYGGMDLAKTPMGTQIVLRAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTQLEERFDLDDPQIDV--QEVDEPDLNAQIVADRLGNALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA+G E + ++GK+ R+++ KF GY+ +G+P +D +
Sbjct: 119 RIMDAGARGAE--------ITLNGKVTGARSRNEKFNRGYIKHNGEPAQSIVDRGDGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ V+I+ P LPD I
Sbjct: 171 MKLGTIGVTVRIIP---------PDAELPDDFRIQ 196
>gi|70606406|ref|YP_255276.1| 30S ribosomal protein S3 [Sulfolobus acidocaldarius DSM 639]
gi|449066618|ref|YP_007433700.1| 30S ribosomal protein S3P [Sulfolobus acidocaldarius N8]
gi|449068892|ref|YP_007435973.1| 30S ribosomal protein S3P [Sulfolobus acidocaldarius Ron12/I]
gi|76363394|sp|Q4JB46.1|RS3_SULAC RecName: Full=30S ribosomal protein S3
gi|68567054|gb|AAY79983.1| 30S ribosomal protein S3P [Sulfolobus acidocaldarius DSM 639]
gi|449035126|gb|AGE70552.1| 30S ribosomal protein S3P [Sulfolobus acidocaldarius N8]
gi|449037400|gb|AGE72825.1| 30S ribosomal protein S3P [Sulfolobus acidocaldarius Ron12/I]
Length = 231
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L V++K F + + A N L A A L L G RRA + +R IM
Sbjct: 65 QLAQVLEKFFGLENPQITVTA--AENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGA G E VIVSGKL ++RAK K K+G + SGQ + + ID A+ +L+
Sbjct: 123 SSGAVGAE--------VIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKP 174
Query: 188 GVLGIKVKI 196
GV G++V I
Sbjct: 175 GVYGVEVVI 183
>gi|296242591|ref|YP_003650078.1| 30S ribosomal protein S3 [Thermosphaera aggregans DSM 11486]
gi|296095175|gb|ADG91126.1| SSU ribosomal protein S3P [Thermosphaera aggregans DSM 11486]
Length = 229
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K F++ G+ ++E L + GY+GVEV TP ++I A ++G G I+
Sbjct: 7 KSYFLSYGLKKLMIDEFLANYFKDAGYAGVEVFRTPTGHRVVIYAEYPGRLIGRGGSVIK 66
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT+++Q RF +V + V + L A A + L + RR G+L+ IM
Sbjct: 67 KLTTILQTRFGL--ENVNITVSPVMDPDLNARVVAFRIVRALEKEIPFRRVMMGMLKRIM 124
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA G E +I+SGKLR +RA K + G + +G+PV ID AV LL+
Sbjct: 125 DAGAVGAE--------IIISGKLRGERATYEKMRVGKIYKAGEPVEYIIDRAVARALLKP 176
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
G+ G++V I+ P LPD V I P+K E
Sbjct: 177 GIYGVEVLIV---------KPGIKLPDHVEIKPVKPE 204
>gi|448415413|ref|ZP_21578213.1| 30S ribosomal protein S3P [Halosarcina pallida JCM 14848]
gi|445681071|gb|ELZ33512.1| 30S ribosomal protein S3P [Halosarcina pallida JCM 14848]
Length = 343
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTKELENRFDLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM++GA G E +I++GK+ R++ KF GY+ +G+P +D +
Sbjct: 119 RIMDAGALGAE--------IILAGKVTGARSRVEKFNRGYIKHNGEPAQSIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PGAKLPDDFEIE 196
>gi|218117273|emb|CAQ37764.1| 40S ribosomal protein S3 [Echinorhynchus truttae]
Length = 71
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 56/71 (78%)
Query: 57 NVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 116
V+G+KGRRIREL+SVV KRF + L + KV RGLCA+ QAESLRYKL+ G+AVR
Sbjct: 1 QVVGDKGRRIRELSSVVAKRFNLKPEKLVLLSSKVEQRGLCAMTQAESLRYKLIEGVAVR 60
Query: 117 RACYGVLRFIM 127
RACYGV+RF+M
Sbjct: 61 RACYGVVRFVM 71
>gi|150399466|ref|YP_001323233.1| 30S ribosomal protein S3P [Methanococcus vannielii SB]
gi|171460840|sp|A6UQ49.1|RS3_METVS RecName: Full=30S ribosomal protein S3
gi|150012169|gb|ABR54621.1| ribosomal protein S3 [Methanococcus vannielii SB]
Length = 211
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+A+ V ++E +L GYS +E++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + +K +E+ + + L + L G+ R+ + +R +M
Sbjct: 63 ELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG +I+SGKL +R+++ KF DGYM G+P E + + + L+
Sbjct: 121 AAGAKGV--------AIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
G++G+ VKIM P LPD + I
Sbjct: 173 GIVGVTVKIMR---------PDVSLPDEIII 194
>gi|156937383|ref|YP_001435179.1| 30S ribosomal protein S3 [Ignicoccus hospitalis KIN4/I]
gi|172044464|sp|A8AA20.1|RS3_IGNH4 RecName: Full=30S ribosomal protein S3
gi|156566367|gb|ABU81772.1| SSU ribosomal protein S3P [Ignicoccus hospitalis KIN4/I]
Length = 241
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 10/189 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + +++E L + GYS VE++ TP+ T +II A R+ ++G +G+ I+
Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIK 68
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
++T V+++ F P V + KV L A A L L G RRA Y LR IM
Sbjct: 69 QITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIM 126
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G + V VSGKLR +RA+ K+ G + SG V D A+ HVLL+
Sbjct: 127 GAGAIGAQ--------VKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKV 178
Query: 188 GVLGIKVKI 196
GV G++V I
Sbjct: 179 GVEGVEVII 187
>gi|429217541|ref|YP_007175531.1| ribosomal protein S3, eukaryotic/archaeal type [Caldisphaera
lagunensis DSM 15908]
gi|429134070|gb|AFZ71082.1| ribosomal protein S3, eukaryotic/archaeal type [Caldisphaera
lagunensis DSM 15908]
Length = 247
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + A+++E L + GYSGV + + + T I I A R ++G KG IR
Sbjct: 5 KKYFLDQAMLRAKIDEYLAQNFYTAGYSGVHIIQSGLGTRIHIYAERPALIIGRKGATIR 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
L V QK F +V++ + +N L A QA + L G RR LR I+
Sbjct: 65 RLQGVFQKVFGL--ENVQVTVSQPDNTELDARIQAFRVARSLEMGYHFRRVAMATLRRII 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GA G E +++SGKL +RAK K + G +I +G V++Y+D AV H L Q
Sbjct: 123 EAGAIGAE--------IVISGKLTNERAKFEKLQMGKVIKTGDIVDQYVDKAVAHAKLPQ 174
Query: 188 GVLGIKVKIM 197
G+ G+++ I+
Sbjct: 175 GIYGVRIIIV 184
>gi|336121751|ref|YP_004576526.1| 30S ribosomal protein S3 [Methanothermococcus okinawensis IH1]
gi|334856272|gb|AEH06748.1| ribosomal protein S3 [Methanothermococcus okinawensis IH1]
Length = 219
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E L +L GYS ++++ TPV T I + A + V+G KGR ++
Sbjct: 3 ERAFVKENVVETLVDEYLKNKLPRAGYSHMDIKKTPVGTRITVFAEKPGFVIGRKGRMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + ++ +E+ +++ N L A+ + L G+ RR + +R +M
Sbjct: 63 ELTETIANKYGVENPQIEV--KQIQNPDLDPEVVAQKIASSLERGMHFRRVAHSAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG +I+SGKL +R+++ KF +GYM G+P + A + L+
Sbjct: 121 GAGAKGI--------VIIISGKLTGERSRTEKFMEGYMKHCGEPSEVLVKKAHKLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
G++G+ VKIM P LPD + I
Sbjct: 173 GIIGVTVKIM---------PPEIVLPDEIVI 194
>gi|227827697|ref|YP_002829477.1| 30S ribosomal protein S3 [Sulfolobus islandicus M.14.25]
gi|227830393|ref|YP_002832173.1| 30S ribosomal protein S3 [Sulfolobus islandicus L.S.2.15]
gi|229579212|ref|YP_002837610.1| 30S ribosomal protein S3 [Sulfolobus islandicus Y.G.57.14]
gi|229582036|ref|YP_002840435.1| 30S ribosomal protein S3 [Sulfolobus islandicus Y.N.15.51]
gi|229584901|ref|YP_002843403.1| 30S ribosomal protein S3 [Sulfolobus islandicus M.16.27]
gi|238619868|ref|YP_002914694.1| 30S ribosomal protein S3 [Sulfolobus islandicus M.16.4]
gi|284997900|ref|YP_003419667.1| 30S ribosomal protein S3 [Sulfolobus islandicus L.D.8.5]
gi|385773369|ref|YP_005645935.1| 30S ribosomal protein S3 [Sulfolobus islandicus HVE10/4]
gi|385776007|ref|YP_005648575.1| 30S ribosomal protein S3 [Sulfolobus islandicus REY15A]
gi|227456841|gb|ACP35528.1| ribosomal protein S3 [Sulfolobus islandicus L.S.2.15]
gi|227459493|gb|ACP38179.1| ribosomal protein S3 [Sulfolobus islandicus M.14.25]
gi|228009926|gb|ACP45688.1| ribosomal protein S3 [Sulfolobus islandicus Y.G.57.14]
gi|228012752|gb|ACP48513.1| ribosomal protein S3 [Sulfolobus islandicus Y.N.15.51]
gi|228019951|gb|ACP55358.1| ribosomal protein S3 [Sulfolobus islandicus M.16.27]
gi|238380938|gb|ACR42026.1| ribosomal protein S3 [Sulfolobus islandicus M.16.4]
gi|284445795|gb|ADB87297.1| ribosomal protein S3 [Sulfolobus islandicus L.D.8.5]
gi|323474755|gb|ADX85361.1| ribosomal protein S3 [Sulfolobus islandicus REY15A]
gi|323477483|gb|ADX82721.1| ribosomal protein S3 [Sulfolobus islandicus HVE10/4]
Length = 216
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 14/196 (7%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
+++E L ++ Y+GVEV TP+ T +II A R ++G GR I++L + +K F
Sbjct: 4 KIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGL 63
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
EN ++ V N L A A L L G RRA + +R IM +GA G E
Sbjct: 64 -ENP-QITITNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAE---- 117
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM-- 197
+I+SGKL +RA+ K K+G + SGQ + + ID A+ +L+ G+ G++V I
Sbjct: 118 ----IIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKP 173
Query: 198 --LEWDQKGKQGPTTP 211
+E K+ P+ P
Sbjct: 174 LKIEDKISLKESPSVP 189
>gi|305662597|ref|YP_003858885.1| 30S ribosomal protein S3 [Ignisphaera aggregans DSM 17230]
gi|304377166|gb|ADM27005.1| SSU ribosomal protein S3P [Ignisphaera aggregans DSM 17230]
Length = 209
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ K F+ G+ ++E L + GY+GV++ TP+ T +II A R ++G +G+
Sbjct: 2 VNIKNYFIEQGIKKVAVDEYLASKFWRAGYAGVDLIRTPLGTRVIIYAARPGLIIGRRGQ 61
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
+R + V++K F EN ++ + N L A A ++ L G+ RRA + LR
Sbjct: 62 TLRTIQLVIEKLFGI-ENP-QITVVEAENPDLNARIVAFNIALALERGIHFRRAGFIALR 119
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+M +GA GCE +++SGKL A+RA+ K K G + SG+ +D AV HVL
Sbjct: 120 RVMAAGAIGCE--------IVISGKLVAERARYEKLKMGKVYKSGEQSFRLVDRAVAHVL 171
Query: 185 LRQGVLGIKVKI 196
L+ G+ GI+V I
Sbjct: 172 LKPGMYGIEVLI 183
>gi|408404342|ref|YP_006862325.1| 30S ribosomal protein S3p [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408364938|gb|AFU58668.1| 30S ribosomal protein S3p [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 222
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 18/181 (9%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
ELNE L L + GY GVEV+ TPV I I TR V+G KG I++L + ++++F
Sbjct: 2 ELNEFLADALKDAGYGGVEVQKTPVGARITIYVTRPGLVIGRKGTGIKDLMTKIEQKFGL 61
Query: 80 --PENSV-ELYAEKVNNRGLCA-IAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE 135
P+ SV E+ ++N +C IAQ + G A RRA L IM +GA G E
Sbjct: 62 QNPQISVLEVTNPELNPHIMCNRIAQL------IERGTAFRRAAMWSLNTIMNAGALGVE 115
Query: 136 FNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVK 195
V++SGKLR +RA K G + SG + + + V HVL + G++GI+++
Sbjct: 116 --------VVISGKLRTERAHFEKHTIGVVPKSGDIAGQIVTTGVSHVLTKMGLMGIQLR 167
Query: 196 I 196
I
Sbjct: 168 I 168
>gi|300521570|gb|ADK25996.1| r-protein S3p [Candidatus Nitrososphaera gargensis]
Length = 236
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 18/181 (9%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
ELNE L L + GY GVEV+ TPV I I TR V+G KG I++L + ++++F
Sbjct: 16 ELNEFLADALKDAGYGGVEVQKTPVGARITIYVTRPGLVIGRKGTGIKDLMTKIEQKFGL 75
Query: 80 --PENSV-ELYAEKVNNRGLCA-IAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE 135
P+ SV E+ ++N +C IAQ + G A RRA L IM +GA G E
Sbjct: 76 QNPQISVLEVTNPELNPHIMCNRIAQL------IERGTAFRRAAMWSLNTIMNAGALGVE 129
Query: 136 FNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVK 195
V++SGKLR +RA K G + SG + + + V HVL + G++GI+++
Sbjct: 130 --------VVISGKLRTERAHFEKHTIGVVPKSGDIAGQIVTTGVSHVLTKMGLMGIQLR 181
Query: 196 I 196
I
Sbjct: 182 I 182
>gi|344256720|gb|EGW12824.1| 40S ribosomal protein S3 [Cricetulus griseus]
Length = 94
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 51/68 (75%)
Query: 158 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
MKF DG MI G PVN Y+D+A+RHVLLRQGVLGIKVK+ML WD GK GP PLPD V+
Sbjct: 1 MKFVDGLMIHCGDPVNYYVDTAMRHVLLRQGVLGIKVKVMLPWDPSGKIGPKKPLPDHVS 60
Query: 218 IHPLKEEV 225
K+E+
Sbjct: 61 TVEPKDEI 68
>gi|359416222|ref|ZP_09208574.1| 30S ribosomal protein S3P [Candidatus Haloredivivus sp. G17]
gi|358033425|gb|EHK01978.1| 30S ribosomal protein S3P [Candidatus Haloredivivus sp. G17]
Length = 351
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 10/193 (5%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
++++F+ G +LNE L EL GYSG +++ TP T+I++ A R V+G G RI
Sbjct: 2 QEKQFIEKGAQKVKLNEFLQDELEGAGYSGFDLQRTPTSTKIVVEAQRPGLVIGRGGSRI 61
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
RELTS +++ F F +E+ ++ + A A+S+ L G V+R Y +R +
Sbjct: 62 RELTSALEEEFDFENPQIEVN--EIEDADGDAQVVADSIADWLEKGGHVKRVGYTYVRRM 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
E+G G E V ++GKL R ++ KF GY+ G E + + +
Sbjct: 120 KEAGVIGAE--------VEITGKLSGNRGRTEKFSFGYVKRCGNTSKENVQKGYQLARTK 171
Query: 187 QGVLGIKVKIMLE 199
G +G+KV++M E
Sbjct: 172 PGAIGVKVRVMKE 184
>gi|389860655|ref|YP_006362895.1| 30S ribosomal protein S3 [Thermogladius cellulolyticus 1633]
gi|388525559|gb|AFK50757.1| ribosomal protein S3 [Thermogladius cellulolyticus 1633]
Length = 228
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ G+ +++ L + GY+GVE+ TP ++I A ++G G IR
Sbjct: 7 KQYFINLGLKKTMIDQFLASYFVDAGYAGVELYKTPTGHRVVIYAEYPGRLIGRGGSVIR 66
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT++ Q RF +V + V + L A A + L + RR +L+ IM
Sbjct: 67 KLTAIFQTRFGL--ENVNITVSPVTDADLNARVVAFRIVRALEKEIPYRRVMMAMLKRIM 124
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA G E +++SGKLR +RA K + G + +G V+ +D AV LL+
Sbjct: 125 DAGALGAE--------IVISGKLRGERATYEKMRTGKIYKAGDLVDYIVDRAVAKTLLKP 176
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
G+ G++V I+ P+ PLPD V + LK E
Sbjct: 177 GIFGVEVIIV---------KPSIPLPDQVELKQLKPE 204
>gi|347524202|ref|YP_004781772.1| 30S ribosomal protein S3 [Pyrolobus fumarii 1A]
gi|343461084|gb|AEM39520.1| ribosomal protein S3 [Pyrolobus fumarii 1A]
Length = 242
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ FV + A+++E L + GY+GV + P+ + I A R ++G G+ IR
Sbjct: 5 KKYFVQKALREAKIDEYLAKRFYRAGYAGVRIIELPIGHRVYIYAERPGMIIGRGGQTIR 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
EL + +K F N+ ++ +V L A A + L G RR +LR I+
Sbjct: 65 ELQYIFEKHFGL--NNPQVSVRRVEEPDLNARVVASRIAVLLERGAHYRRVANVMLRRIL 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E +++SGKLR +RA+ K + G + S+G V +D AV HVLL+
Sbjct: 123 AAGAIGAE--------IVISGKLRTERARYEKLRAGKVYSTGYQVEYMVDRAVMHVLLKP 174
Query: 188 GVLGIKVKIM 197
GV GI+VKI+
Sbjct: 175 GVYGIEVKIV 184
>gi|327400866|ref|YP_004341705.1| 30S ribosomal protein S3 [Archaeoglobus veneficus SNP6]
gi|327316374|gb|AEA46990.1| ribosomal protein S3 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 22/208 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV D + ++ E + +E+ G+ GV++ TP+ T++ + R V+G+ GRRIR
Sbjct: 4 ERKFVEDRIKKLKVKEWMIQEVRNAGFGGVDITRTPLGTQVTLFVERPGLVIGKGGRRIR 63
Query: 68 ELTSVVQK-RFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
LT +++ + P+ SV+ + N L A A +L G R+A Y L I
Sbjct: 64 ALTERLKEFGIENPQVSVDEIEKPEFNAQLMASLLARALER----GWYFRKAGYRFLYRI 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
ME+GAKGCE +SGKL ++RA++ KF G M+ +G+P + + + +
Sbjct: 120 MEAGAKGCEIE--------ISGKLTSERARTEKFLAGTMVHTGEPASSMVRKGFDIAIKK 171
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GVLG+ V+I+ P LPD
Sbjct: 172 LGVLGVTVRIIP---------PDVELPD 190
>gi|385805558|ref|YP_005841956.1| 30S ribosomal protein S3 [Fervidicoccus fontis Kam940]
gi|383795421|gb|AFH42504.1| 30S ribosomal protein S3P [Fervidicoccus fontis Kam940]
Length = 251
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ + +++E L ++ GY+GV+V TP+ T ++IRA R ++G +G+ I+
Sbjct: 5 KRYFIEKNMSVVKVDEYLAKQFYRAGYAGVDVYRTPLGTRVVIRAERPAFIIGRRGQTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
L++V + F EN ++ V N L A A L L G R+ + LR IM
Sbjct: 65 TLSNVFENYFGL-ENP-QITVMPVENPDLNARVVAFRLAVSLERGFHFRKLAFAALRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E +I+SGK+ ++RA+ KF+ G + +G+ +D AV H LL+
Sbjct: 123 AAGAAGAE--------IIISGKITSERARYEKFRAGKIYKTGEQATYIVDKAVAHALLKP 174
Query: 188 GVLGIKVKIM 197
G+ G+KV I+
Sbjct: 175 GIYGVKVIIV 184
>gi|149064299|gb|EDM14502.1| rCG46746 [Rattus norvegicus]
Length = 77
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 53/64 (82%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
QISK RK VA+G+F AELNE LT+ELAEDG+SGVEV VT RTEI I ATRTQ+VLGEKG
Sbjct: 2 QISKNRKSVAEGIFKAELNEFLTQELAEDGHSGVEVWVTLTRTEINISATRTQDVLGEKG 61
Query: 64 RRIR 67
IR
Sbjct: 62 HGIR 65
>gi|284162454|ref|YP_003401077.1| 30S ribosomal protein S3 [Archaeoglobus profundus DSM 5631]
gi|284012451|gb|ADB58404.1| ribosomal protein S3 [Archaeoglobus profundus DSM 5631]
Length = 219
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 22/208 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+ D + ++ E L E+ G+ GV++ TP+ T++ + R V+G GRRI+
Sbjct: 4 ERKFIRDRLIKLKVKEWLKEEVKNAGFGGVDIVRTPLGTQVSLFVERPGLVIGRGGRRIK 63
Query: 68 ELTSVVQKRFK-FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
++Q++ K F ++ +L ++V A A L L G RRA Y L I
Sbjct: 64 ----ILQEKLKEFGLDNPQLSVDEVKRPEFNAQLMATLLARALERGWYFRRAGYRFLYRI 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
ME+GAKGC+ +SGKL ++RA++ KF G ++ +G P E +D + +
Sbjct: 120 MEAGAKGCQIE--------ISGKLVSERARTEKFTAGTIVHTGDPAYELVDKGFDIAIKK 171
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV G+ VKI+ P LPD
Sbjct: 172 LGVYGVSVKII---------PPDVELPD 190
>gi|15920635|ref|NP_376304.1| 30S ribosomal protein S3P [Sulfolobus tokodaii str. 7]
gi|27734524|sp|Q975I7.1|RS3_SULTO RecName: Full=30S ribosomal protein S3
gi|15621418|dbj|BAB65413.1| 30S ribosomal protein S3P [Sulfolobus tokodaii str. 7]
Length = 225
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 14/215 (6%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I+
Sbjct: 5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L ++++ F ++ ++ V N L A A L L G RRA + +R IM
Sbjct: 65 QLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E VI+SGKL ++RAK K K+G + SG +++ +D AV +L+
Sbjct: 123 NAGALGAE--------VIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKP 174
Query: 188 GVLGIKVKI---MLEWDQ-KGKQGPTTPLPDLVTI 218
GV G+++ I M D+ + ++ P P ++VT+
Sbjct: 175 GVYGVEILITKPMKSVDKIELREQPKGPGENMVTV 209
>gi|222064015|emb|CAQ86670.1| putative ribosomal protein S3 [Histomonas meleagridis]
Length = 89
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 65/97 (67%), Gaps = 8/97 (8%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
M++GA+GCE V++SGK+R+ RA +MKF++GYM+ SG +Y+ AV H+ ++
Sbjct: 1 MDAGARGCE--------VVISGKMRSARAAAMKFREGYMVKSGDVSQKYVLKAVGHIPMK 52
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
Q V+GI+V IML D +G GP P PD++ +H K+
Sbjct: 53 QAVVGIRVLIMLAHDPQGITGPREPQPDVIKVHEAKD 89
>gi|124028161|ref|YP_001013481.1| 30S ribosomal protein S3P [Hyperthermus butylicus DSM 5456]
gi|152060866|sp|A2BMC5.1|RS3_HYPBU RecName: Full=30S ribosomal protein S3
gi|123978855|gb|ABM81136.1| 30S ribosomal protein S3P [Hyperthermus butylicus DSM 5456]
Length = 247
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ + +++E L + GY+GV++ P+ T +II A R ++G +G IR
Sbjct: 5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIR 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L ++ + F ++ ++ +V N L A A + L G RR + R ++
Sbjct: 65 QLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVL 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G + +++SGKLR +RA+ K + G + ++G V +D AV HV L+
Sbjct: 123 NAGAIGVQ--------IVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKP 174
Query: 188 GVLGIKVKIM 197
GVLGI+V I+
Sbjct: 175 GVLGIEVMIV 184
>gi|14600662|ref|NP_147181.1| 30S ribosomal protein S3 [Aeropyrum pernix K1]
gi|6685919|sp|Q9YF78.1|RS3_AERPE RecName: Full=30S ribosomal protein S3
gi|5104002|dbj|BAA79318.1| 30S ribosomal protein S3P [Aeropyrum pernix K1]
Length = 246
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T++ K F+ G+ +++E L + E GYS V+V T + T I I A R ++G
Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIG 58
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+G IR L V Q F P + + E+ N L A QA + + G+ RR +
Sbjct: 59 RRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAF 116
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+ IM +GA G E + +SGKL ++RA+ KFK G + SG V+E +D A
Sbjct: 117 AAINRIMSNGALGVE--------ITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRAS 168
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 236
+ L +GV+G+ V I+ + GK G D V I +E V A + IE
Sbjct: 169 AYARLPKGVIGVDVIIV----KPGKPG------DHVRIKSEEEVKDVVDAIRSEIE 214
>gi|332796534|ref|YP_004458034.1| 30S ribosomal protein S3 [Acidianus hospitalis W1]
gi|332694269|gb|AEE93736.1| ribosomal protein S3 [Acidianus hospitalis W1]
Length = 227
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 10/192 (5%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ K+ F+ + L+E L ++ Y+GV++ TP+ T III A R ++G+ G+
Sbjct: 2 VNIKQYFLQKSMTKVMLDEYLAKQFYNAEYAGVDIIKTPMGTRIIIYAGRPAMIIGKGGK 61
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
I++L V +K F EN ++ V+N L A A L L G RRA + +R
Sbjct: 62 TIKQLAQVFEKFFNL-ENP-QITVTNVDNPELNARVMAFRLAVALEKGYHFRRAAFITIR 119
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IM +GA G E V+VSGK+ ++RAK K K+G + +G + ID AV
Sbjct: 120 RIMNAGALGAE--------VVVSGKITSERAKYEKLKEGTVYKTGNSLETMIDRAVAIAT 171
Query: 185 LRQGVLGIKVKI 196
L+ G+ G+++ I
Sbjct: 172 LKPGIYGVEIII 183
>gi|167043045|gb|ABZ07757.1| putative ribosomal protein S3, C-terminal domain protein
[uncultured marine microorganism HF4000_ANIW141A21]
Length = 214
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 18/182 (9%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
++E L + + GY G E+ +PV T I I T+ V+G +G IRELT ++K F+
Sbjct: 11 IDEYLEKNIESAGYGGFEIITSPVGTRITIYVTKPGLVIGRRGIGIRELTENLEKIFELQ 70
Query: 81 ENSVELYAEKV---NNRGLCA-IAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEF 136
+ ++ ++ N R +C +AQ + G A RRA + IM SGA G E
Sbjct: 71 NLQISVFEVEIPEQNARIMCNRVAQT------VARGTAFRRAAMWTVNAIMRSGALGAE- 123
Query: 137 NFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+I++GKLR++R+ + K+KDG + +G P + AV V L+ G+ GI+VKI
Sbjct: 124 -------IIIAGKLRSERSHTEKYKDGVVPKTGYPATLTVREAVSDVKLKMGLYGIQVKI 176
Query: 197 ML 198
+
Sbjct: 177 AI 178
>gi|307006559|gb|ADN23564.1| 40S ribosomal protein S3 [Hyalomma marginatum rufipes]
Length = 91
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 50/65 (76%)
Query: 160 FKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
F DG MI SG+P N+Y+++AVRHVLLRQGVLGIKVKIML D GK GP PLPD V+I
Sbjct: 1 FVDGLMIHSGEPTNDYVETAVRHVLLRQGVLGIKVKIMLPCDPNGKLGPKRPLPDHVSIM 60
Query: 220 PLKEE 224
K+E
Sbjct: 61 EPKKE 65
>gi|315425856|dbj|BAJ47509.1| small subunit ribosomal protein S3 [Candidatus Caldiarchaeum
subterraneum]
gi|315427714|dbj|BAJ49310.1| small subunit ribosomal protein S3 [Candidatus Caldiarchaeum
subterraneum]
gi|343484671|dbj|BAJ50325.1| small subunit ribosomal protein S3 [Candidatus Caldiarchaeum
subterraneum]
Length = 203
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 19/200 (9%)
Query: 19 AELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
A++ E L +L + GV + TP+ T + I A R V+G KG+ I+E+T ++K+F
Sbjct: 15 ADIEEYLREKLKNAFFGGVSISFTPLGTRVTIYAMRPSRVIGPKGKVIKEITEALEKQFG 74
Query: 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
+ + +V L AE + L GL RR + ++ IME+GAKG E
Sbjct: 75 --VENPVVTVVEVEVPELNPYVMAERIAQDLARGLRYRRVGFWAVKRIMEAGAKGVE--- 129
Query: 139 LVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
V +SGKL + R+++ KF +G+M SG+ Y+ VLL+ G+ G++V I
Sbjct: 130 -----VHISGKLTSARSRTEKFTEGFMPKSGELAMNYVLEGKSSVLLKTGLFGVRVLIY- 183
Query: 199 EWDQKGKQGPTTPLPDLVTI 218
P PLP+ + +
Sbjct: 184 --------PPDAPLPEEIKV 195
>gi|149068839|gb|EDM18391.1| rCG40478, isoform CRA_a [Rattus norvegicus]
Length = 55
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 48/62 (77%), Gaps = 8/62 (12%)
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
MESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLR
Sbjct: 1 MESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 52
Query: 187 QG 188
QG
Sbjct: 53 QG 54
>gi|297527401|ref|YP_003669425.1| 30S ribosomal protein S3 [Staphylothermus hellenicus DSM 12710]
gi|297256317|gb|ADI32526.1| ribosomal protein S3 [Staphylothermus hellenicus DSM 12710]
Length = 225
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
L+E L + GY+G+E+ TP +II A V+G G IR+L +++Q F
Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVIIYAEYPGRVIGRGGSIIRKLMTIMQTHFGL- 78
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V + V + L A A + L + RR +LR IME+GA G E
Sbjct: 79 -ENVNITVSPVPDPDLNARVVAFRIVRALEKEIPYRRVAMAMLRRIMEAGAVGAE----- 132
Query: 141 SSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW 200
+I+SGKLR++RA+ K K G + +G V+ +D AV LL++GV G++V I+
Sbjct: 133 ---IIISGKLRSERARYQKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVR-- 187
Query: 201 DQKGKQGPTTPLPDLVTIHPLKEE 224
P PD V I +K E
Sbjct: 188 -------PHLKPPDYVEIKSVKPE 204
>gi|320101360|ref|YP_004176952.1| 30S ribosomal protein S3 [Desulfurococcus mucosus DSM 2162]
gi|319753712|gb|ADV65470.1| SSU ribosomal protein S3P [Desulfurococcus mucosus DSM 2162]
Length = 222
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 19/204 (9%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
++E L + GY+ VE+ TP ++I A ++G G I++L++++Q RF
Sbjct: 20 IDEFLAHYFKDAGYADVELYRTPTGYRVVIHAEYPGRLIGRGGSVIKKLSTILQTRFGL- 78
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
++V + V + L A A + L + RR +L+ +M++GA G E
Sbjct: 79 -DNVNVTISPVVDPDLNARVVAFRIVRALEKEIPFRRVIMYMLKRVMDAGAVGAE----- 132
Query: 141 SSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW 200
+IVSGKLR +RA K K G + +G+PV +D AV LL+ G+ G++V I+
Sbjct: 133 ---IIVSGKLRGERATYEKLKAGKVYKAGEPVEYVVDRAVAKALLKPGIFGVEVVIV--- 186
Query: 201 DQKGKQGPTTPLPDLVTIHPLKEE 224
P LPD V + LK E
Sbjct: 187 ------KPNIKLPDHVEVKALKPE 204
>gi|288931516|ref|YP_003435576.1| 30S ribosomal protein S3 [Ferroglobus placidus DSM 10642]
gi|288893764|gb|ADC65301.1| ribosomal protein S3 [Ferroglobus placidus DSM 10642]
Length = 223
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 28/211 (13%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+ D V + E + E+ G+ G+++ TP+ T++ + R V+G GRRI+
Sbjct: 4 ERKFIEDKVKKLMVKEWIVEEVRNAGFGGLDIVRTPLGTQVTLFVERPGLVIGRGGRRIK 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LT +K +F ++ ++ ++++ A A L L G R+A Y L IM
Sbjct: 64 ALT---EKLKEFGLDNPQISVDEIDKPEFNAQLMASLLARALERGWYFRKAGYRFLYRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQP----VNEYIDSAVRHV 183
E+GAKGCE +SGKL ++RA++ KF G +I +G P V E D A++ +
Sbjct: 121 EAGAKGCEIE--------ISGKLTSERARTEKFIAGTIIHTGDPAITCVREGFDIAIKKL 172
Query: 184 LLRQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV G++V+I+ P LPD
Sbjct: 173 ----GVYGVRVRII---------PPDAELPD 190
>gi|126465922|ref|YP_001041031.1| 30S ribosomal protein S3 [Staphylothermus marinus F1]
gi|152060907|sp|A3DNB3.1|RS3_STAMF RecName: Full=30S ribosomal protein S3
gi|126014745|gb|ABN70123.1| SSU ribosomal protein S3P [Staphylothermus marinus F1]
Length = 224
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
L+E L + GY+G+E+ TP ++I A ++G G IR+L +++Q F
Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL- 78
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V + V + L A A + L + RR +LR +ME+GA G E
Sbjct: 79 -ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAE----- 132
Query: 141 SSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW 200
+I+SGKLR++RA+ K K G + +G V+ +D AV LL++GV G++V I+
Sbjct: 133 ---IIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVR-- 187
Query: 201 DQKGKQGPTTPLPDLVTIHPLKEE 224
P PD V I +K E
Sbjct: 188 -------PHLKPPDYVEIKSVKPE 204
>gi|302348032|ref|YP_003815670.1| 30S ribosomal protein S3 [Acidilobus saccharovorans 345-15]
gi|302328444|gb|ADL18639.1| 30S ribosomal protein S3P [Acidilobus saccharovorans 345-15]
Length = 238
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K F+ G+ +++E L + GY+GV++ + + T + I A R V+G +G IR
Sbjct: 5 KSYFLRQGLTRVKVDEYLAQNFYTAGYAGVQIVQSGLGTRVHIFAERPALVIGRRGATIR 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L +V++K F V++ + +N L A QA + L G RR +R IM
Sbjct: 65 KLQAVLEKVFGL--EGVQVTVSQPDNMELNARVQAFRIARALEMGYHFRRVAMATMRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GA G E +++SGKL +RA+ K + G +I +G V+ Y D A+ + L
Sbjct: 123 EAGAVGVE--------IVISGKLSRERARFEKLQAGKVIKTGNVVDVYTDRAIAYAKLPL 174
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
G++G++V+I+ P PD++ + P E +A
Sbjct: 175 GIIGVEVRIIR---------PEAARPDIL-LRPDSEAAAIA 205
>gi|218884480|ref|YP_002428862.1| 30S ribosomal protein S3P [Desulfurococcus kamchatkensis 1221n]
gi|218766096|gb|ACL11495.1| 30S ribosomal protein S3P [Desulfurococcus kamchatkensis 1221n]
Length = 223
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K F+ G+ ++E L + GY+ VE+ TP ++I A ++G G I+
Sbjct: 7 KSYFLEYGLKKLMIDEFLAHYFKDAGYADVELYRTPTGYRVVIHAEYPGRLIGRGGSVIK 66
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L++++Q +F ++V + V + L A A + L + RR +L+ +M
Sbjct: 67 KLSTILQNKFGL--DNVNITISPVIDPDLNARVVAFRIVRALEKEIPFRRVMMYMLKRVM 124
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA G E +I+SGKLR +RA K K G + +G+PV +D AV LL+
Sbjct: 125 DAGAIGAE--------IIISGKLRGERATYEKLKAGKVYKAGEPVEYMVDRAVVKALLKP 176
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
G+ G++V I+ P +PD V I LK E
Sbjct: 177 GIFGVEVVIV---------KPGIKMPDHVEIKTLKPE 204
>gi|268323281|emb|CBH36869.1| putative 30S ribosomal protein S3P [uncultured archaeon]
Length = 234
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 19/217 (8%)
Query: 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70
FV +G+ ++E +EL GY G++++ TP+ T+I + + ++G+ G+RI+++T
Sbjct: 6 FVEEGIKKVRMDEYFQKELERAGYGGMDIKRTPMGTQITVHVEKPGMIIGKNGKRIKKVT 65
Query: 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130
+ K+ + ++ ++ + + L A + L + G RRA L+ IM +G
Sbjct: 66 DEITKKQEL--DNPQIDVQPIAAPELSAQLMSNRLAKLIERGWHFRRAGRSTLQRIMGAG 123
Query: 131 AKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVL 190
A GCE + +SGKLR R + K +GY+ G E +D + GV+
Sbjct: 124 ALGCE--------ITMSGKLRGPRGRVEKMVEGYIKHCGSVAEEIVDKGYSIAQKKTGVI 175
Query: 191 GIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYV 227
G+ V I+ P +PD ++ +KE+V V
Sbjct: 176 GVMVWIV---------APDANIPDSFRMNVVKEDVVV 203
>gi|255513430|gb|EET89696.1| ribosomal protein S3- domain protein [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 207
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 22/209 (10%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R+F+ D + +++ L EL++ G+S VE++ TP+ T I + V+G G+ I
Sbjct: 4 ERRFIDDAIIKLNISKFLGTELSKAGFSRVEIQKTPIITRITVYVLNPGRVIGRGGKAID 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT ++ RF N+ + +V N+ + + A+ + +KL G+ R+ L+ IM
Sbjct: 64 DLTETIKSRFNV--NNPRISVVEVQNKMIEPLLVAKDIAFKLERGINPRKIIQFTLKSIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQ--RAKSMKFKDGYMISSGQPVNEYIDSAVRHVLL 185
E+GA G E +I+SGKL A+ RAKS++ GY+ +G +N ++ V
Sbjct: 122 ENGALGAE--------IIISGKLAAKGARAKSIRKSVGYIPKAGDVIN-LVNKGVATAYP 172
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLPD 214
+ G +G+ V+I+ P T PD
Sbjct: 173 KYGAIGVVVRIV---------PPGTVFPD 192
>gi|170290796|ref|YP_001737612.1| 30S ribosomal protein S3 [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174876|gb|ACB07929.1| ribosomal protein S3 [Candidatus Korarchaeum cryptofilum OPF8]
Length = 251
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+KFV +G+ +L+E + + + G+ GVE+ TP+R I + ++G GR +
Sbjct: 11 KKFVQEGIVKYKLHEFMEKISDKAGFHGVEISSTPIRDIITVYVESPGVMIGRGGRTSKR 70
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
++ ++++ ++ A+KV+ L A + ++ G ++ Y L +M
Sbjct: 71 ISDILKEELGIQNPYIQ--AKKVDKPFLSTRIVASYIARRIAKGERYKKVAYSALGRVMA 128
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
GAKG E SGK +QRA+ +F++G + GQ E ++ AV+HVL+ QG
Sbjct: 129 EGAKGVEIRL--------SGKFGSQRAREERFREGVIYRCGQDYIENVEYAVKHVLMPQG 180
Query: 189 VLGIKVKIMLEWDQKGKQGPTT 210
++G++V+I+ + G +GP
Sbjct: 181 MIGVRVRIV----KPGVRGPDA 198
>gi|11499503|ref|NP_070744.1| 30S ribosomal protein S3P [Archaeoglobus fulgidus DSM 4304]
gi|6094176|sp|O28360.1|RS3_ARCFU RecName: Full=30S ribosomal protein S3
gi|2648625|gb|AAB89335.1| SSU ribosomal protein S3P (rps3P) [Archaeoglobus fulgidus DSM 4304]
Length = 229
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV + + + E + E+ G+ GV++ TP+ T++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LT +K F + ++ ++V A A L L G RRA Y L IM
Sbjct: 64 ALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GAKGCE +SGKL ++RA++ KF G ++ +G P + + +
Sbjct: 121 EAGAKGCEIE--------ISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GVLG+ V+I+ P LPD
Sbjct: 173 GVLGVSVRIIP---------PDVTLPD 190
>gi|77024944|gb|ABA61371.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
HF70_59C08]
Length = 269
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 26/242 (10%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+Q S RKF+ V + E L + + G+ G++ + TP T++ + A R V+G K
Sbjct: 2 SQNSTIRKFIDRNVERLLVREFLLSKTEKAGFGGLDFQRTPEGTKVTLSAERVGMVIGRK 61
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G+ I EL +Q F +E+ +++N L A A L L G RRA +
Sbjct: 62 GKIINELQRRLQNDFNLENPRLEVA--EIDNPALNAQVMASKLASALERGWYFRRAGHSS 119
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
L IM++GAKGC V++SGKL R ++ KF+ G++ G +++D
Sbjct: 120 LLNIMDAGAKGC--------LVVLSGKLTGSRNRTQKFQAGHIKYCGDTAIQFMDVGKAV 171
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSI------E 236
+ + G +G V IM P + LP + I + EV +AP +I E
Sbjct: 172 CVKKLGTIGCTVAIMR---------PGSKLPHEIRIKE-RHEVGLAPLADVAIIKEGSDE 221
Query: 237 LP 238
LP
Sbjct: 222 LP 223
>gi|390938985|ref|YP_006402723.1| 30S ribosomal protein S3 [Desulfurococcus fermentans DSM 16532]
gi|390192092|gb|AFL67148.1| ribosomal protein S3 [Desulfurococcus fermentans DSM 16532]
Length = 223
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K F+ G+ ++E L + GY+ VE+ TP ++I A ++G G I+
Sbjct: 7 KSYFLEYGLKKLMIDEFLAHYFKDAGYADVELYRTPTGYRVVIHAEYPGRLIGRGGSVIK 66
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L++++Q R ++V + V + L A A + L + RR +L+ +M
Sbjct: 67 KLSTILQNRLGL--DNVNITISPVIDPDLNARVVAFRIVRALEKEIPFRRVMMYMLKRVM 124
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
++GA G E +I+SGKLR +RA K K G + +G+PV +D AV LL+
Sbjct: 125 DAGAIGAE--------IIISGKLRGERATYEKLKAGKVYKAGEPVEYIVDRAVVKALLKP 176
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
G+ G++V I+ P +PD V I LK E
Sbjct: 177 GIFGVEVVIV---------KPGIRMPDHVEIKTLKPE 204
>gi|350427367|ref|XP_003494734.1| PREDICTED: 40S ribosomal protein S3-like, partial [Bombus
impatiens]
Length = 80
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 169 GQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVA 228
G+P NEY+++A RHVLLRQGVLGIKVKIML +D GK GP PLPD V+I K+EV+
Sbjct: 1 GEPTNEYVNTATRHVLLRQGVLGIKVKIMLPYDPHGKTGPKKPLPDSVSIVEPKDEVF-- 58
Query: 229 PATATS 234
P+ TS
Sbjct: 59 PSQPTS 64
>gi|374633062|ref|ZP_09705429.1| ribosomal protein S3, eukaryotic/archaeal type [Metallosphaera
yellowstonensis MK1]
gi|373524546|gb|EHP69423.1| ribosomal protein S3, eukaryotic/archaeal type [Metallosphaera
yellowstonensis MK1]
Length = 231
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + ++E L ++ Y+G E+ TP+ T +II A R ++G+ G+ I+
Sbjct: 5 KKYFLQKSLTRVMVDEYLAKQYYNAEYAGSEIIKTPMGTRVIIYAGRPAMIIGKGGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+L ++++ F EN ++ + L A A L L G RRA + +R IM
Sbjct: 65 QLHQILERYFNL-ENP-QITVAQPEKPELNARVMAFRLAVTLERGYHFRRAAFITIRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E VIVSGK+ ++RAK K K+G + +G ++ +D A+ L+
Sbjct: 123 NAGALGAE--------VIVSGKITSERAKFEKLKEGIVYKTGNSLDVMVDRAIAIATLKM 174
Query: 188 GVLGIKVKIMLEWDQKGKQG-----PTTPLP 213
G+ G++V I K PT+P P
Sbjct: 175 GIYGVEVIITKPLKNIDKMSLRELTPTSPQP 205
>gi|68010962|ref|XP_670951.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486681|emb|CAI03517.1| hypothetical protein PB301211.00.0 [Plasmodium berghei]
Length = 82
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 148 GKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQG 207
GKLRAQRAKSMKF+DG++IS+G+P ++++A R L QGVLGIKVKIML K G
Sbjct: 1 GKLRAQRAKSMKFRDGHLISTGEPSKRFVNTATRSAQLNQGVLGIKVKIMLPSAIDTKTG 60
Query: 208 PTTPLPDLVTI 218
+ LPD +++
Sbjct: 61 LPSILPDNISV 71
>gi|48477718|ref|YP_023424.1| 30S ribosomal protein S3 [Picrophilus torridus DSM 9790]
gi|61215562|sp|Q6L1C1.1|RS3_PICTO RecName: Full=30S ribosomal protein S3
gi|48430366|gb|AAT43231.1| small subunit ribosomal protein S3P [Picrophilus torridus DSM 9790]
Length = 217
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
K+++FV D + ++E L +E G+ G+E++ TP T I + R V+G G +I
Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKI 61
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
+E+T ++KRF +E+ ++VN L ++ + L G R+A LR +
Sbjct: 62 KEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKM 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
++ A G + + GK+ +RA++ KF G + SG+P ++ L+
Sbjct: 120 IDLNAPGV--------LIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLK 171
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
G++G+ V+I+ LPD + I P+K E V A S
Sbjct: 172 TGIIGVSVRILKS---------NYRLPDDIEIKPVKIEKEVENNGAES 210
>gi|170066762|ref|XP_001868214.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167862957|gb|EDS26340.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 222
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 78/174 (44%), Gaps = 61/174 (35%)
Query: 54 RTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL 113
RTQNVLGE IREL +VV+KRF +EL AEKV R LCAIAQAESL YKL
Sbjct: 43 RTQNVLGESDHHIRELNAVVKKRF------IELNAEKVATRSLCAIAQAESLCYKL---- 92
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
I+ G +G G++R
Sbjct: 93 ------------ILRQGLRG--------------GRVR---------------------K 105
Query: 174 EYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVY 226
EY +A LRQG GI+VKIML WD G GP L D V + P E +Y
Sbjct: 106 EYYATA---TPLRQGEFGIQVKIMLPWDPNGIFGPKESLSDNVKMVEPEDEIMY 156
>gi|327311857|ref|YP_004338754.1| 30S ribosomal protein S3 [Thermoproteus uzoniensis 768-20]
gi|326948336|gb|AEA13442.1| 30S ribosomal protein S3P [Thermoproteus uzoniensis 768-20]
Length = 194
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L +LA GY E+ TP+ T I+I A R ++G+KG ++EL+ ++ +
Sbjct: 2 IKEFLEYKLARLGYVDSEILKTPLGTRIVIYAERPSRIIGKKGAVVKELSQILGSKLGVE 61
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ KV+ + A + + G+ RR + +R + E+GA+G E
Sbjct: 62 NPQIDVIDISKVDVPEMFPKVVAYRIANAMAKGIRFRRVAFIAIRQVTEAGARGFE---- 117
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+++SGKL +RAK K+K G + +G + + SAV HVLL+ G+ GIK I
Sbjct: 118 ----LVISGKLSTERAKFEKYKIGKVYKTGADSTKTMRSAVVHVLLKPGIYGIKATI 170
>gi|146302882|ref|YP_001190198.1| 30S ribosomal protein S3 [Metallosphaera sedula DSM 5348]
gi|172046893|sp|A4YCX2.1|RS3_METS5 RecName: Full=30S ribosomal protein S3
gi|145701132|gb|ABP94274.1| SSU ribosomal protein S3P [Metallosphaera sedula DSM 5348]
Length = 240
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + ++E L +E Y+G E+ TP+ T + I A R ++G+ G+ I+
Sbjct: 5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
L +++K F EN ++ + L A A L L G RRA + +R IM
Sbjct: 65 RLAQILEKYFNL-ENP-QITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E VIVSGK+ ++RAK K K+G + +G ++ +D A+ L+
Sbjct: 123 NAGALGAE--------VIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKM 174
Query: 188 GVLGIKVKI 196
G+ G++V I
Sbjct: 175 GIYGVEVVI 183
>gi|126459168|ref|YP_001055446.1| 30S ribosomal protein S3 [Pyrobaculum calidifontis JCM 11548]
gi|126248889|gb|ABO07980.1| SSU ribosomal protein S3P [Pyrobaculum calidifontis JCM 11548]
Length = 220
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ +
Sbjct: 28 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVE 87
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ L A + + G+ RR + +R +ME+GAKG E
Sbjct: 88 NPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFE---- 143
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI--- 196
++VSGKL +RAK K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 144 ----IVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRITPA 199
Query: 197 MLEWDQKGKQGPTT 210
L + + K P T
Sbjct: 200 TLRYSDEYKIKPPT 213
>gi|152060898|sp|A3MTL3.2|RS3_PYRCJ RecName: Full=30S ribosomal protein S3
Length = 216
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ +
Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ L A + + G+ RR + +R +ME+GAKG E
Sbjct: 84 NPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI--- 196
++VSGKL +RAK K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRITPA 195
Query: 197 MLEWDQKGKQGPTT 210
L + + K P T
Sbjct: 196 TLRYSDEYKIKPPT 209
>gi|193084311|gb|ACF09970.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
KM3-130-D10]
Length = 367
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 19/210 (9%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
R F+ V + E L RE G+ G+ TP T++ ++A + V+G +G+ I E
Sbjct: 8 RAFIHRNVERQLVREYLLRETERAGFGGLSFNRTPEGTKVTLQAEQVGRVIGRRGKVIHE 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
L +Q F EN L E+V L A A L L G RRA + + IM+
Sbjct: 68 LQRRLQNDFIL-ENP-HLDVEEVAESRLSAQIMASRLASSLERGWFFRRAGHSTAQNIMD 125
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA+GC VI+SGK+ R + KF+ G++ G+ E++D+ + + G
Sbjct: 126 AGARGC--------LVILSGKITGPRHRVEKFQQGHIKFCGETALEFMDTGFSTAVKKLG 177
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+G V+IM P LP +TI
Sbjct: 178 TIGCTVRIMR---------PGVKLPHEITI 198
>gi|307594499|ref|YP_003900816.1| 30S ribosomal protein S3 [Vulcanisaeta distributa DSM 14429]
gi|307549700|gb|ADN49765.1| ribosomal protein S3 [Vulcanisaeta distributa DSM 14429]
Length = 228
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K + D + + E L LA+ GY +V TP+ T II+ A R ++G KG ++E
Sbjct: 12 KKILQDKIKEWMIKEFLNYRLAKQGYVDSDVLKTPLGTRIIVYAERPNRIIGRKGVIVKE 71
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
LT ++ K+ + EN + + + N L A + + + G+ RRA +R IM+
Sbjct: 72 LTELLSKKLEV-ENPI-IDVTPIQNPELNPKIIANRIAWAMTKGVKFRRAGMIAIRQIMD 129
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
GAKG E V +SGKL ++R++ K+ G + +G + V VLL+ G
Sbjct: 130 GGAKGAE--------VTISGKLTSERSRFEKYIYGTIYKNGFDSRTKVQRFVGQVLLKPG 181
Query: 189 VLGIKVKI 196
+ GI+V+I
Sbjct: 182 LYGIEVRI 189
>gi|330835819|ref|YP_004410547.1| 30S ribosomal protein S3P [Metallosphaera cuprina Ar-4]
gi|329567958|gb|AEB96063.1| 30S ribosomal protein S3P [Metallosphaera cuprina Ar-4]
Length = 239
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
K+ F+ + ++E L +E Y+G E+ TP+ T + I A R ++G+ G+ I+
Sbjct: 5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
L ++++ F S ++ + L A A L L G RRA + +R IM
Sbjct: 65 RLAQILERYFNL--ESPQITVAQPEKPELNARVMAFRLAVTLEKGYHFRRAAFITIRKIM 122
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E VIVSGK+ ++RAK K K+G + +G ++ +D A+ L+
Sbjct: 123 NAGALGAE--------VIVSGKITSERAKFEKLKEGIVYKTGNGLDVMVDRAIAIATLKM 174
Query: 188 GVLGIKVKI 196
G+ G++V I
Sbjct: 175 GIYGVQVVI 183
>gi|352682734|ref|YP_004893258.1| 30S ribosomal protein S3p [Thermoproteus tenax Kra 1]
gi|350275533|emb|CCC82180.1| 30S ribosomal protein S3p [Thermoproteus tenax Kra 1]
Length = 216
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 9/189 (4%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K + D V + E L +LA GY EV TP+ T I+I A R ++G+KG ++E
Sbjct: 12 KKILQDNVKRWMIKEFLEYKLARLGYIYSEVLKTPLGTRIVIYAERPSRIIGKKGAVVKE 71
Query: 69 LTSVVQKRFKFPENSVELYA-EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
L+ ++ + +++ KV+ + A + + G+ RR + +R +
Sbjct: 72 LSQILSAKMGVDNPQIDVIDISKVDVPEMFPKVIAYRIANAMAKGIRFRRVAFVAVRQVT 131
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
E+GA+G E +++SGKL +RAK K+K G + SG + + A HVLL+
Sbjct: 132 EAGARGFE--------LVISGKLSTERAKFEKYKVGKVYKSGNDSMKTVRRAAVHVLLKP 183
Query: 188 GVLGIKVKI 196
G+ GI++ I
Sbjct: 184 GIYGIRIAI 192
>gi|193083750|gb|ACF09437.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
SAT1000-15-B12]
Length = 259
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 10/189 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
R F+ V + E L RE G+ G+ TP T++ ++A + V+G +G+ I E
Sbjct: 8 RAFIHRNVERQLVREYLLRETERAGFGGLSFNRTPEGTKVTLQAEQVGRVIGRRGKVIHE 67
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
L +Q F EN L E+V L A A L L G RRA + + IM+
Sbjct: 68 LQRRLQNDFIL-ENP-HLDVEEVAESRLSAQIMASRLASSLERGWFFRRAGHSTAQNIMD 125
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA+GC VI+SGK+ R + KF+ G++ G+ E++D+ + + G
Sbjct: 126 AGARGC--------LVILSGKITGPRHRVEKFQQGHVKFCGETALEFMDTGFSTAVKKLG 177
Query: 189 VLGIKVKIM 197
+G VKIM
Sbjct: 178 TIGCTVKIM 186
>gi|325968787|ref|YP_004244979.1| 30S ribosomal protein S3 [Vulcanisaeta moutnovskia 768-28]
gi|323707990|gb|ADY01477.1| 30S ribosomal protein S3 [Vulcanisaeta moutnovskia 768-28]
Length = 228
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 10/188 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K + D V + E L LA+ GY +V TP+ T III A R ++G KG ++E
Sbjct: 12 KKILQDKVKEWMIKEFLNYRLAKQGYVDSDVLKTPLGTRIIIYAERPNRIIGRKGVIVKE 71
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
LT ++ ++ EN + + + + L A + + + G+ RRA +R IM+
Sbjct: 72 LTDLLSRKLDV-ENPI-IDVTPIQSPELNPKIIANRIAWAMTKGVKFRRAGMIAIRQIMD 129
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
GAKG E V +SGKL ++R++ K+ G + +G + V VLL+ G
Sbjct: 130 GGAKGAE--------VTISGKLTSERSRFEKYVFGVIYKNGFDSRTKVQRFVGQVLLKPG 181
Query: 189 VLGIKVKI 196
+ GI+V+I
Sbjct: 182 LYGIEVRI 189
>gi|171185213|ref|YP_001794132.1| 30S ribosomal protein S3 [Pyrobaculum neutrophilum V24Sta]
gi|170934425|gb|ACB39686.1| ribosomal protein S3- domain protein [Pyrobaculum neutrophilum
V24Sta]
Length = 224
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 97/194 (50%), Gaps = 12/194 (6%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ +
Sbjct: 31 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGAIVKEISNILMNKLGVE 90
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R +ME+GAKG E
Sbjct: 91 NPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFE---- 146
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI--- 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 147 ----IVVSGKLSTERARFEKHTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRIAPA 202
Query: 197 MLEWDQKGKQGPTT 210
L++ + K P T
Sbjct: 203 ALQYSDEYKIKPPT 216
>gi|193083860|gb|ACF09541.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
KM3-85-F5]
Length = 231
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L +E G+ G+ TP T++ + A + V+G +G+ I EL +Q+ FK
Sbjct: 19 VREYLLKETERAGFGGLHFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQRRLQEDFKLT 78
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+E+ E++ + + A A L L G RRA + ++ IM++GA+GC
Sbjct: 79 NPQLEV--EEIEDSRINAQVMASRLASSLERGWFFRRAGHSTVQNIMDAGARGC------ 130
Query: 141 SSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW 200
VI+SGK+ R + KF+ G++ G+ +++D + + G +G V+IM
Sbjct: 131 --IVILSGKITGARHRVEKFQKGHIKYCGETALQFMDVGFSTAVKKLGTVGCTVRIMR-- 186
Query: 201 DQKGKQGPTTPLPDLVTIHPLKE 223
P T LP + I E
Sbjct: 187 -------PGTKLPHEIAIQERHE 202
>gi|170516818|gb|ACB15220.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
DeepAnt-15E7]
Length = 258
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 10/194 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
Q S R + V + E L RE G+ G+ TP T+I +RA + V+G +G
Sbjct: 3 QQSTIRTLIGRNVERQLVREYLLRETERAGFGGLTFNRTPDGTKISLRAEQVGRVIGRRG 62
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ I EL++ ++ F + L E+V L A A + L G RRA +G
Sbjct: 63 KVIHELSARLKNDFFL--DRPHLDVEEVTEPRLNAQIMASRMSSSLERGWFFRRAGHGTA 120
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHV 183
+ IM++GA+GC V++SGK+ R + KF+ G++ G+ E++D
Sbjct: 121 QQIMDAGARGC--------LVVLSGKITGARHRVEKFQQGHIKFCGETALEFMDIGFSTA 172
Query: 184 LLRQGVLGIKVKIM 197
+ + G +G V+IM
Sbjct: 173 VKKLGTIGCTVRIM 186
>gi|47079410|gb|AAT10153.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
DeepAnt-JyKC7]
Length = 307
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 10/197 (5%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M Q + R F+ V + E L RE G+ G+E TP T++ + A + V+G
Sbjct: 1 MKRQSNTIRTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+G+ I EL ++ FK +E+ ++ L A A L L G RRA +
Sbjct: 61 RRGKVIHELQYRLKSDFKLENPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGH 118
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+ IM++GA+GC +I+SGK+ R + KF+ G++ G+ +++D
Sbjct: 119 STAQNIMDAGARGC--------LIILSGKISGPRHRVQKFQQGHIKFCGETALQFMDEGF 170
Query: 181 RHVLLRQGVLGIKVKIM 197
+ + G +G V+IM
Sbjct: 171 STAVKKLGTVGCTVRIM 187
>gi|432096999|gb|ELK27498.1| 40S ribosomal protein S3-B [Myotis davidii]
Length = 106
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
MI SG PVN D+AVRHVL R+GV G+KVKI L WD GK+GPT P PD V+I K+E
Sbjct: 1 MIRSGDPVNYDADTAVRHVLPRRGVRGLKVKITLPWDPSGKRGPTRPPPDHVSIVEPKDE 60
Query: 225 VYVAPATATS 234
P TA S
Sbjct: 61 ---RPPTAPS 67
>gi|119873216|ref|YP_931223.1| 30S ribosomal protein S3 [Pyrobaculum islandicum DSM 4184]
gi|152060899|sp|A1RV98.1|RS3_PYRIL RecName: Full=30S ribosomal protein S3
gi|119674624|gb|ABL88880.1| SSU ribosomal protein S3P [Pyrobaculum islandicum DSM 4184]
Length = 217
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L +L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ +
Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R +ME+GAKG E
Sbjct: 84 NPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>gi|340344786|ref|ZP_08667918.1| Ribosomal protein S3 [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519927|gb|EGP93650.1| Ribosomal protein S3 [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 251
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 16/197 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + + G+S E+ TP+ T + + TR V+G KG
Sbjct: 1 MSAVKNVIKDNYNMMLLKDYLRVAIKDAGFSHAEISKTPMGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRFKF--PENS-VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
IRELT + FK P+ S VE+ +++ +C + L G A RRA
Sbjct: 61 GIRELTDKLATDFKLKNPQISVVEIAKPELSPSVMC-----NRMASHLERGTAFRRATMW 115
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
L+ IM++GA G + + +SGKLR R+ K G + +G +D +
Sbjct: 116 TLKQIMDNGAMGVQ--------ITISGKLRGDRSAFEKHSAGILPRAGHHAEVIVDEDIA 167
Query: 182 HVLLRQGVLGIKVKIML 198
HV G++GI+++I +
Sbjct: 168 HVKTAMGLIGIRIRIAI 184
>gi|257076565|ref|ZP_05570926.1| 30S ribosomal protein S3P [Ferroplasma acidarmanus fer1]
Length = 228
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 19/217 (8%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+ + K++KFV+D + + E L E G+ G++++ TP T I + R V+G
Sbjct: 4 SDMMKEKKFVSDNIKKLLVTEYLQSENDSAGFGGMDMKRTPFGTNITLYVNRPGLVIGRH 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G +I+ +TS+++ ++ +E+ ++V N L ++ + L G R+A
Sbjct: 64 GSKIKAMTSILETKYGLESPQIEV--KEVENADLNPQVISKKIALSLEKGWNYRKAGNTT 121
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LR I++ A+G + + GK+ +RA++ KF G + SG+P + +
Sbjct: 122 LRRIIDQHARGV--------LIRIGGKISGERARTQKFMYGEIKYSGEPARAGVITGYSV 173
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
+L+ G +GI V+++ + LPD ++I+
Sbjct: 174 AMLKTGAIGIYVRLLRQ---------DYHLPDEISIN 201
>gi|18312873|ref|NP_559540.1| 30S ribosomal protein S3 [Pyrobaculum aerophilum str. IM2]
gi|18160363|gb|AAL63722.1| ribosomal protein S3 [Pyrobaculum aerophilum str. IM2]
Length = 196
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 12/192 (6%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 2 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 61
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R +ME+GAKG E
Sbjct: 62 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFE---- 117
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI--- 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 118 ----IVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRIAPA 173
Query: 197 MLEWDQKGKQGP 208
L++ + K P
Sbjct: 174 TLQYSDEYKIKP 185
>gi|329765063|ref|ZP_08256647.1| ribosomal protein S3 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|393796604|ref|ZP_10379968.1| 30S ribosomal protein S3 [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138440|gb|EGG42692.1| ribosomal protein S3 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 251
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + + G+S E+ TP T + + TR V+G KG
Sbjct: 1 MSAVKNVIKDNYNMMLLKDYLRVAIKDAGFSHAEISKTPTGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRF--KFPENS-VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
IRELT + F K P+ S VE+ +++ +C A R G A RRA
Sbjct: 61 GIRELTDKLATDFGLKNPQISVVEIDKPELSPSVMCNRMAAHLER-----GTAFRRATMW 115
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
L+ IME+GA G + + +SGKLR R+ K G + +G +D +
Sbjct: 116 TLKQIMENGAMGVQ--------ITISGKLRGDRSAFEKHTAGILPRAGHHAEVIVDEDIA 167
Query: 182 HVLLRQGVLGIKVKI 196
HV G++GI+++I
Sbjct: 168 HVETAMGLIGIRIRI 182
>gi|27734520|sp|Q8ZWI0.2|RS3_PYRAE RecName: Full=30S ribosomal protein S3
Length = 218
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R +ME+GAKG E
Sbjct: 84 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>gi|379004535|ref|YP_005260207.1| 30S ribosomal protein S3, eukaryotic/archaeal type [Pyrobaculum
oguniense TE7]
gi|375159988|gb|AFA39600.1| ribosomal protein S3, eukaryotic/archaeal type [Pyrobaculum
oguniense TE7]
Length = 220
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L +L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R + E+GAKG E
Sbjct: 84 NPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>gi|13541161|ref|NP_110849.1| 30S ribosomal protein S3P [Thermoplasma volcanium GSS1]
gi|27734525|sp|Q97BX1.1|RS3_THEVO RecName: Full=30S ribosomal protein S3
gi|14324549|dbj|BAB59476.1| ribosomal protein small subunit S3 [Thermoplasma volcanium GSS1]
Length = 225
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 19/215 (8%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
K+RKFV + V + E L +E G+ + ++ TP T I + R V+G +G ++
Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
+++T ++K++ +E+ + V + L A+ + L G + R+A L+
Sbjct: 62 QQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRT 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
+++GA+G + +SGK+ +RA+ KF G + SG+P ++ + L+
Sbjct: 120 IDAGARGV--------LIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLK 171
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPL 221
G+LG+ VKI+ P LPD+ +I L
Sbjct: 172 VGILGVTVKIL---------NPEYKLPDVFSISNL 197
>gi|193084211|gb|ACF09875.1| ribosomal protein S3 [uncultured marine group II euryarchaeote
KM3-136-D10]
Length = 400
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVR----VTPVRTEIIIRATRTQNVL 59
++++ R FV V + E L +E G+ G+ T + T++ ++A R V+
Sbjct: 3 KVNQIRHFVDRNVERQLVREYLLKETERAGFGGLHFERAFDQTSICTKVTLQAERVGMVI 62
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
G +G+ I EL ++ F EN +L E++ N L A A L L G RRA
Sbjct: 63 GRRGKVINELQRRIRTDFNL-ENP-KLQVEEIENPALNAQVMASKLASALERGWYFRRAG 120
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSA 179
+ + ++E+GAKGC +I++GKL R ++ KF G++ G+ ++D
Sbjct: 121 HSSVLNVIEAGAKGC--------LIIIAGKLTGSRHRTEKFLKGHIKFCGETALTHMDVG 172
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP---DLVTIHPLKEEVYVAPATA 232
+++ G +G V IM P T LP D+++ Y+APA A
Sbjct: 173 QATAVVKLGTIGCTVAIM---------KPGTKLPHEVDIISRIDAGLGPYIAPAMA 219
>gi|296083024|emb|CBI22428.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 16 VFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75
+ FA LNE+L R LA+DG SGVEVRV P+ TEIII AT+TQNVL ++GR REL + VQK
Sbjct: 11 IIFAGLNEMLVRRLAKDGGSGVEVRVIPMLTEIIIHATQTQNVLCKQGR--RELAARVQK 68
>gi|374325617|ref|YP_005083814.1| 30S ribosomal protein S3 [Pyrobaculum sp. 1860]
gi|356640883|gb|AET31562.1| 30S ribosomal protein S3P [Pyrobaculum sp. 1860]
Length = 218
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L+ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 24 IKEFLEYRLSRYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R +ME+GAKG E
Sbjct: 84 NPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV H+LL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERARFEKQTYGKLYKIGYDARNRVRRAVIHILLKPGIYGIEVRI 192
>gi|407464758|ref|YP_006775640.1| 30S ribosomal protein S3 [Candidatus Nitrosopumilus sp. AR2]
gi|407047946|gb|AFS82698.1| 30S ribosomal protein S3 [Candidatus Nitrosopumilus sp. AR2]
Length = 262
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + + G+S E+ TPV T + + TR V+G KG
Sbjct: 1 MSAVKNVIKDNYNMMLLKDYLREAIKDAGFSHAEISKTPVGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRF--KFPENS-VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
IR LT + F K P+ S VE+ ++ +C + L G A RRA
Sbjct: 61 GIRALTDKLASDFGLKNPQISVVEIEKPELAPSVMC-----NRMASHLERGTAFRRATMW 115
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
L+ IME GA G + + +SGKLR R+ K G + +G +D +
Sbjct: 116 TLKQIMEGGAMGVQ--------ITISGKLRGDRSAFEKHTQGILPRAGHHAEIVVDEDIA 167
Query: 182 HVLLRQGVLGIKVKI 196
HV G++GI+++I
Sbjct: 168 HVQTAMGLIGIRIRI 182
>gi|172046048|sp|A4WIY8.2|RS3_PYRAR RecName: Full=30S ribosomal protein S3
Length = 220
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVE 83
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R + E+GAKG E
Sbjct: 84 NPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFE---- 139
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 140 ----IVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>gi|386876664|ref|ZP_10118757.1| ribosomal protein S3 [Candidatus Nitrosopumilus salaria BD31]
gi|386805532|gb|EIJ65058.1| ribosomal protein S3 [Candidatus Nitrosopumilus salaria BD31]
Length = 251
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 14/194 (7%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + + G+S E+ TPV T + + TR V+G KG
Sbjct: 1 MSAVKNVIKDNYNMMLLRDYLREAIKDAGFSHAEISKTPVGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRF--KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
IR LT + F K P+ SV +++ L + L G A RRA
Sbjct: 61 GIRSLTEKLATDFGLKNPQISV----VEIDKPELAPSVMCNRMASHLERGTAFRRATMWT 116
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
L+ IME GA G + + +SGKLR R+ K G + +G +D + H
Sbjct: 117 LKQIMEGGAMGVQ--------ITISGKLRGDRSAFEKHTAGILPRAGHHAEVIVDEDIAH 168
Query: 183 VLLRQGVLGIKVKI 196
V G++GI+++I
Sbjct: 169 VKTAMGLIGIRIRI 182
>gi|145591005|ref|YP_001153007.1| 30S ribosomal protein S3 [Pyrobaculum arsenaticum DSM 13514]
gi|145282773|gb|ABP50355.1| SSU ribosomal protein S3P [Pyrobaculum arsenaticum DSM 13514]
Length = 222
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ +
Sbjct: 26 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVE 85
Query: 81 ENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+++ K+ + A + + G+ RR + +R + E+GAKG E
Sbjct: 86 NPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFE---- 141
Query: 140 VSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
++VSGKL +RA+ K G + G + AV HVLL+ G+ GI+V+I
Sbjct: 142 ----IVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 194
>gi|20094278|ref|NP_614125.1| 30S ribosomal protein S3 [Methanopyrus kandleri AV19]
gi|27734506|sp|Q8TX35.1|RS3_METKA RecName: Full=30S ribosomal protein S3
gi|19887318|gb|AAM02055.1| Ribosomal protein S3 [Methanopyrus kandleri AV19]
Length = 227
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+KFV G+ EL+E L EL GY G+ ++ P T+II R +G +GR IR
Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRR 71
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ VQ+RF V + +++ + L A L L G+ RRA YG LR IM
Sbjct: 72 VEEEVQERFPL-LGRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMN 130
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GAKG + +I+SGKL RA++ KF +G + G+P +EY+ + + G
Sbjct: 131 AGAKG--------AMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPG 182
Query: 189 VLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKE 223
+G+ V+IM P LPD + I P +E
Sbjct: 183 AIGVTVRIMP---------PDVELPDELEIRPPEE 208
>gi|407462398|ref|YP_006773715.1| 30S ribosomal protein S3 [Candidatus Nitrosopumilus koreensis AR1]
gi|407046020|gb|AFS80773.1| 30S ribosomal protein S3 [Candidatus Nitrosopumilus koreensis AR1]
Length = 251
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + E G+S E+ TP T + + TR V+G KG
Sbjct: 1 MSSVKNVIKDNYNMMLLKDYLREAIKEAGFSHAEISKTPTGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRF--KFPENS-VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
IR+LT + F K P+ S VE+ +++ +C + L G A RRA
Sbjct: 61 GIRDLTDKLATDFGLKNPQISVVEIEKPELSPSVMC-----NRMASHLERGTAFRRATMW 115
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
L+ IME+GA G + + +SGKLR R+ K G + +G + +
Sbjct: 116 TLKQIMENGAMGVQ--------ITISGKLRGDRSAFEKHTAGILPRAGHHAEVIVAEDIA 167
Query: 182 HVLLRQGVLGIKVKI 196
HV G++GI+++I
Sbjct: 168 HVNTAMGLIGIRIRI 182
>gi|291333640|gb|ADD93331.1| ribosomal protein S3 [uncultured archaeon MedDCM-OCT-S11-C441]
Length = 218
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 23 EVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82
E L +E G+ G+ TP T++ +RA + V+G +G+ I +L +Q+ F +
Sbjct: 21 EFLLKETERAGFGGLNFNRTPEGTKVTLRAEQVGRVIGRRGKVIHDLQRRLQEDFDL--D 78
Query: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSS 142
+ +L E++ A A L L G RRA + ++ IM++GA+GC
Sbjct: 79 NPQLEVEEIEESRTNAQVMASRLASSLERGWFFRRAGHSTVQNIMDAGARGC-------- 130
Query: 143 KVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQ 202
V +SGK+ R + KF+ G++ G+ + +D + + G +G V+IM
Sbjct: 131 IVTLSGKITGARHRVEKFQKGHIKYCGETALQLMDVGFSTAVKKLGTIGCTVRIMR---- 186
Query: 203 KGKQGPTTPLPDLVTIHPLKE 223
P LP +TI E
Sbjct: 187 -----PGAKLPHEITIQERSE 202
>gi|147827332|emb|CAN62175.1| hypothetical protein VITISV_001516 [Vitis vinifera]
Length = 1989
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSV 72
+D FA LNE+L R LA+DG SGVEVRV P+ TEIII AT+TQNVL ++GR REL +
Sbjct: 547 SDVSIFAGLNEMLVRRLAKDGGSGVEVRVIPMLTEIIIHATQTQNVLCKQGR--RELAAR 604
Query: 73 VQK 75
VQK
Sbjct: 605 VQK 607
>gi|16082264|ref|NP_394722.1| 30S ribosomal protein S3P [Thermoplasma acidophilum DSM 1728]
gi|27734534|sp|Q9HIR5.1|RS3_THEAC RecName: Full=30S ribosomal protein S3
gi|10640611|emb|CAC12389.1| probable 30S ribosomal protein S3 [Thermoplasma acidophilum]
Length = 225
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 19/215 (8%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
K+RKF+ + V + E + +E G+ + ++ TP T I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
+++T ++K++ +E+ + V + L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 127 MESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
+++GAKG + +SGK+ +RA+ KF G + SG+P ++ + + L+
Sbjct: 120 IQAGAKGV--------LIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLK 171
Query: 187 QGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPL 221
G+LG+ VKI+ P LPD+ +I +
Sbjct: 172 VGILGVTVKIL---------NPEYKLPDVFSIENI 197
>gi|161528312|ref|YP_001582138.1| 30S ribosomal protein S3 [Nitrosopumilus maritimus SCM1]
gi|160339613|gb|ABX12700.1| ribosomal protein S3 [Nitrosopumilus maritimus SCM1]
Length = 251
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+S + + D L + L + E G+S E+ TP T + + TR V+G KG
Sbjct: 1 MSSVKNVIKDNYNMMLLKDYLRDAIKEAGFSHAEISKTPTGTRVALHVTRPGIVIGRKGS 60
Query: 65 RIRELTSVVQKRF--KFPENS-VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
IR+LT + F K P+ S VE+ +++ +C + L G A RRA
Sbjct: 61 GIRDLTDKLATDFGLKNPQISVVEIEKPELSPSVMC-----NRMASHLERGTAFRRATMW 115
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
L+ IME+GA G + + +SGKLR R+ K G + +G + +
Sbjct: 116 TLKQIMENGAMGVQ--------ITISGKLRGDRSAFEKHTAGILPRAGHHAEVIVAEDIA 167
Query: 182 HVLLRQGVLGIKVKI 196
HV G++GI+++I
Sbjct: 168 HVGTAMGLIGIRIRI 182
>gi|147838004|emb|CAN69383.1| hypothetical protein VITISV_017964 [Vitis vinifera]
Length = 286
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73
++ EDGYS V+VRVTP+ EII+RATRTQN L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>gi|159041478|ref|YP_001540730.1| 30S ribosomal protein S3 [Caldivirga maquilingensis IC-167]
gi|157920313|gb|ABW01740.1| ribosomal protein S3- domain protein [Caldivirga maquilingensis
IC-167]
Length = 236
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 16/180 (8%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E L L + Y ++ T + T I+I A + ++G KG++++ L +++ +F
Sbjct: 25 IKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKFNLD 84
Query: 81 ENSVELYAE---KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFN 137
+++ E + N R L A+ A+++ G+ RRA LR + E+ +G E
Sbjct: 85 NVVIDVIQEPHPEYNAR-LVALRIADAM----AKGIRFRRAAIIALRQLQEANVQGAE-- 137
Query: 138 FLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
VI+SGKL +R++ K+ G +I +GQ E + AV VLL+ G+ ++V+++
Sbjct: 138 ------VIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRVL 191
>gi|154281921|ref|XP_001541773.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411952|gb|EDN07340.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 151
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 36/46 (78%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEII 49
ISK+RKFV GVF+A LN RELAE+GYSGVEVRVTP T+II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>gi|170061554|ref|XP_001866283.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167879747|gb|EDS43130.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 271
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 34/41 (82%)
Query: 15 GVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRT 55
G+F AELNE LTR+L +GYSGVEVRVTP RTEIII AT T
Sbjct: 228 GMFLAELNEFLTRQLVANGYSGVEVRVTPTRTEIIIMATCT 268
>gi|170036208|ref|XP_001845957.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167878755|gb|EDS42138.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 281
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 35/46 (76%)
Query: 30 AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75
A D + VEV VT +RTEIII TRTQ VLGEKG IRELT+VVQK
Sbjct: 16 AADDFLSVEVHVTSIRTEIIIMTTRTQKVLGEKGHHIRELTAVVQK 61
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 186 RQGVLGIKVKIMLEWDQKGKQGPTTPLP-DLVTIHPLKEEVYVAPATATSIEL 237
R LG KIML WD GK P PLP +++ + P E ++ P T +++L
Sbjct: 79 RWSCLG---KIMLPWDPNGKIDPKEPLPENVLVVEPKDEIMHNTPGTKNNLKL 128
>gi|332105493|gb|AEE01378.1| ribosomal protein S3 [Bubalus bubalis]
Length = 34
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 31/34 (91%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGY 34
MA QISKKRKFVADG+F AELNE LTRELAEDGY
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGY 34
>gi|374724270|gb|EHR76350.1| 30S ribosomal protein S3 / S3P [uncultured marine group II
euryarchaeote]
Length = 232
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA + S R V V + E L + G+ +++R TP TE+ + A R V+G
Sbjct: 1 MAGKKSTLRTIVNRNVERHLVKEFLMQNTKRSGFGALDIRRTPQGTEVTVHAERPGMVIG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
KG+ I EL + + F EN +L E++ L A AE + L G RRA
Sbjct: 61 RKGKIINELQKRLNEEFDL-ENP-KLKVEEIEKATLNAQVMAEKIASALERGWYHRRAGN 118
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+ IM+SGA+G V ++GKL R ++ K+ G+ V ++A+
Sbjct: 119 SAAQNIMDSGARGV--------IVTLAGKLTGSRNRTEKYIRGHXXXXXXHVKYCGETAL 170
Query: 181 RHV-------LLRQGVLGIKVKIM 197
+H+ + + G +G+ V IM
Sbjct: 171 QHMDRGYSVAVKKLGTIGVTVAIM 194
>gi|118576057|ref|YP_875800.1| ribosomal protein S3 [Cenarchaeum symbiosum A]
gi|152060854|sp|A0RVX9.1|RS3_CENSY RecName: Full=30S ribosomal protein S3
gi|118194578|gb|ABK77496.1| ribosomal protein S3 [Cenarchaeum symbiosum A]
Length = 261
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF--K 78
L E L + + G+SGVEV P T+I + TR V+G KG IRELT ++K F K
Sbjct: 17 LREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLK 76
Query: 79 FPENSV------ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGA 131
P+ V ELY + NR I + G A RRA ++ IME A
Sbjct: 77 SPQVDVKEIETPELYPGVMCNRMASHIER----------GTAFRRATMWTIQQIMEKKDA 126
Query: 132 KGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
G + + +SGKLR R+ K G + +G + + V HV G+
Sbjct: 127 MGVQ--------ITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGL 176
>gi|147795005|emb|CAN71930.1| hypothetical protein VITISV_040426 [Vitis vinifera]
Length = 414
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74
++ EDGYS ++V+VT + EIIIRAT+TQN L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>gi|41615265|ref|NP_963763.1| hypothetical protein NEQ481 [Nanoarchaeum equitans Kin4-M]
gi|40068989|gb|AAR39324.1| NEQ481 [Nanoarchaeum equitans Kin4-M]
Length = 236
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 25/218 (11%)
Query: 2 ATQISKK--RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
A Q++ K RKF+ + E + L S V +R TP+ +II + R + +
Sbjct: 4 ALQMASKVIRKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMIS 63
Query: 60 GEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL-AVRRA 118
E R L +++ +F + +E+ + N L A AE L + + A RR
Sbjct: 64 EE---RKAHLAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRL 118
Query: 119 CYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDS 178
L IM +GA G E ++++G+L QR K+ +FK G + +G +D
Sbjct: 119 AQRYLETIMNAGAIGAE--------IVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDR 170
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLV 216
A L+ GV GI V I+ P +PD++
Sbjct: 171 AFNIAYLKPGVAGIHVTIL---------KPDAEIPDII 199
>gi|152060885|sp|Q74MZ4.2|RS3_NANEQ RecName: Full=30S ribosomal protein S3
Length = 230
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RKF+ + E + L S V +R TP+ +II + R + + E R
Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL-AVRRACYGVLRFIM 127
L +++ +F + +E+ + N L A AE L + + A RR L IM
Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA G E ++++G+L QR K+ +FK G + +G +D A L+
Sbjct: 122 NAGAIGAE--------IVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKP 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLV 216
GV GI V I+ P +PD++
Sbjct: 174 GVAGIHVTIL---------KPDAEIPDII 193
>gi|161899235|ref|XP_001712844.1| ribosomal protein S3 [Bigelowiella natans]
gi|75756337|gb|ABA27232.1| ribosomal protein S3 [Bigelowiella natans]
Length = 262
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVN 173
+ R + LRF++ SG +GC + + G R++R K+ KF+ G + SG N
Sbjct: 156 SFRSIIFNTLRFLINSGVRGCM--------IKLKGVYRSKRTKTFKFRRGLISHSGIQNN 207
Query: 174 EYIDSAVRHVLLRQGVLGIKVKIM 197
++IDS ++ ++G LGI +KIM
Sbjct: 208 DWIDSDSFYLNKKRGTLGINIKIM 231
>gi|328951230|ref|YP_004368565.1| 30S ribosomal protein S3 [Marinithermus hydrothermalis DSM 14884]
gi|328451554|gb|AEB12455.1| ribosomal protein S3 [Marinithermus hydrothermalis DSM 14884]
Length = 247
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E++TRE+ G + +++ + + A + ++G G I+ + + +QKRF P
Sbjct: 39 IRELITREVYHGGIARIDIERAADNVSVTVHAAKPGVIIGRGGETIKRMRAELQKRF--P 96
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
++ L ++V N L A A+ + ++ AVRRA ++ +ME+GA+G
Sbjct: 97 NRTISLNVQEVPNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMEAGAQGA------ 150
Query: 141 SSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
KV+VSG++ A++A++ G + N ID GVLG+K I L
Sbjct: 151 --KVVVSGRIGGAEQARTEWAALGRVPLHTLRAN--IDYGFALAWTTYGVLGVKAYIFL 205
>gi|327243123|gb|AEA41162.1| ribosomal protein S3 [Metacarcinus magister]
Length = 31
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/31 (87%), Positives = 28/31 (90%)
Query: 33 GYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
GYSGV+VR TP RTEIII ATRTQNVLGEKG
Sbjct: 1 GYSGVQVRHTPARTEIIILATRTQNVLGEKG 31
>gi|379716674|ref|YP_005305010.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379716752|ref|YP_005305088.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725356|ref|YP_005317542.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
TI0902]
gi|385794093|ref|YP_005830499.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
NE061598]
gi|421754959|ref|ZP_16191917.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
80700075]
gi|61215376|sp|Q5NHW2.1|RS3_FRATT RecName: Full=30S ribosomal protein S3
gi|123063579|sp|Q14JB4.1|RS3_FRAT1 RecName: Full=30S ribosomal protein S3
gi|56603976|emb|CAG44964.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320288|emb|CAL08347.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
FSC198]
gi|282158628|gb|ADA78019.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
NE061598]
gi|377826805|gb|AFB80053.1| SSU ribosomal protein S3p (S3e) [Francisella tularensis subsp.
tularensis TI0902]
gi|377828351|gb|AFB78430.1| SSU ribosomal protein S3p (S3e) [Francisella tularensis subsp.
tularensis TIGB03]
gi|377828429|gb|AFB78508.1| SSU ribosomal protein S3p (S3e) [Francisella tularensis subsp.
tularensis TIGB03]
gi|409089503|gb|EKM89543.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
80700075]
Length = 222
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R+ V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L GV+G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|408843732|ref|YP_169380.2| 30S ribosomal protein S3, partial [Francisella tularensis subsp.
tularensis SCHU S4]
gi|408843735|ref|YP_666512.2| 30S ribosomal protein S3, partial [Francisella tularensis subsp.
tularensis FSC198]
Length = 220
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R+ V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L GV+G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|118496858|ref|YP_897908.1| 30S ribosomal protein S3 [Francisella novicida U112]
gi|385792181|ref|YP_005825157.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|387823814|ref|YP_005823285.1| 30S ribosomal protein S3 [Francisella cf. novicida 3523]
gi|152060861|sp|A0Q4I9.1|RS3_FRATN RecName: Full=30S ribosomal protein S3
gi|118422764|gb|ABK89154.1| 30S ribosomal protein S3 [Francisella novicida U112]
gi|328675413|gb|AEB28088.1| SSU ribosomal protein S3p (S3e) [Francisella cf. novicida 3523]
gi|328676327|gb|AEB27197.1| SSU ribosomal protein S3p (S3e) [Francisella cf. novicida Fx1]
Length = 223
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L GV+G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|89255676|ref|YP_513037.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
LVS]
gi|115314177|ref|YP_762900.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
OSU18]
gi|134302579|ref|YP_001122550.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156501626|ref|YP_001427691.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254368628|ref|ZP_04984643.1| hypothetical protein FTAG_01721 [Francisella tularensis subsp.
holarctica FSC022]
gi|290953206|ref|ZP_06557827.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
URFT1]
gi|421752464|ref|ZP_16189489.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
AS_713]
gi|421754330|ref|ZP_16191305.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
831]
gi|421758061|ref|ZP_16194921.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
80700103]
gi|421759892|ref|ZP_16196716.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
70102010]
gi|422938172|ref|YP_007011319.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
FSC200]
gi|423049986|ref|YP_007008420.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
F92]
gi|424675214|ref|ZP_18112123.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
70001275]
gi|122325782|sp|Q0BNS1.1|RS3_FRATO RecName: Full=30S ribosomal protein S3
gi|123094541|sp|Q2A5G4.1|RS3_FRATH RecName: Full=30S ribosomal protein S3
gi|152060862|sp|A4IZS8.1|RS3_FRATW RecName: Full=30S ribosomal protein S3
gi|189045009|sp|A7N9T2.1|RS3_FRATF RecName: Full=30S ribosomal protein S3
gi|89143507|emb|CAJ78683.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
LVS]
gi|115129076|gb|ABI82263.1| ribosomal protein S3 [Francisella tularensis subsp. holarctica
OSU18]
gi|134050356|gb|ABO47427.1| ribosomal protein S3 [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156252229|gb|ABU60735.1| ribosomal protein S3 [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157121536|gb|EDO65721.1| hypothetical protein FTAG_01721 [Francisella tularensis subsp.
holarctica FSC022]
gi|407293323|gb|AFT92229.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
FSC200]
gi|409084854|gb|EKM85015.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
831]
gi|409085048|gb|EKM85201.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
AS_713]
gi|409089809|gb|EKM89841.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
70102010]
gi|409090631|gb|EKM90644.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
80700103]
gi|417434163|gb|EKT89131.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
70001275]
gi|421950708|gb|AFX69957.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
F92]
Length = 223
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L GV+G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|384210006|ref|YP_005595726.1| 30S ribosomal protein S3 [Brachyspira intermedia PWS/A]
gi|343387656|gb|AEM23146.1| ribosomal protein S3 [Brachyspira intermedia PWS/A]
Length = 245
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R I I R V+G KG+R+ + + VQK K P V
Sbjct: 62 KESFDPAISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTTVQKMVKKP---VHF 118
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ + L A A+S+ +L +A RRA V+ M+ GAKG KV+
Sbjct: 119 SITEIRDAELDANLAAQSVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 170
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
SG+L A A++ ++K+G + N ID L G++GIKV I
Sbjct: 171 SGRLAGADIARTEQYKNGSVPLHTLRAN--IDYGTAEALTTFGIIGIKVWI 219
>gi|225621034|ref|YP_002722292.1| 30S ribosomal protein S3 [Brachyspira hyodysenteriae WA1]
gi|225215854|gb|ACN84588.1| 30S ribosomal protein S3 [Brachyspira hyodysenteriae WA1]
Length = 202
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R I I R V+G KG+R+ + + VQK K P V
Sbjct: 19 KESFDPAISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTTVQKMVKKP---VHF 75
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ + L A A+S+ +L +A RRA V+ M+ GAKG KV+
Sbjct: 76 SITEIRDAELDANLAAQSVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 127
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKG 204
SG+L A A++ ++K+G + N ID L G++GIKV W KG
Sbjct: 128 SGRLAGADIARTEQYKNGSVPLHTLRAN--IDYGTAEALTTFGIIGIKV-----WIYKG 179
>gi|445062113|ref|ZP_21374548.1| 30S ribosomal protein S3 [Brachyspira hampsonii 30599]
gi|444506508|gb|ELV06835.1| 30S ribosomal protein S3 [Brachyspira hampsonii 30599]
Length = 245
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R I I R V+G KG+R+ + + VQK K P V
Sbjct: 62 KESFDPAISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTTVQKMVKKP---VHF 118
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ + L A A+++ +L +A RRA V+ M+ GAKG KV+
Sbjct: 119 SITEIRDAELDATLAAQNVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 170
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
SG+L A A++ ++K+G + N ID L G++GIKV I
Sbjct: 171 SGRLAGADIARTEQYKNGSVPLHTLRAN--IDYGTAEALTTFGIIGIKVWI 219
>gi|187932137|ref|YP_001892122.1| 30S ribosomal protein S3 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|226697715|sp|B2SDX9.1|RS3_FRATM RecName: Full=30S ribosomal protein S3
gi|187713046|gb|ACD31343.1| 30S ribosomal protein S3 [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 223
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGDDVEKLRAEVHKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L GV+G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|429123826|ref|ZP_19184358.1| 30S ribosomal protein S3 [Brachyspira hampsonii 30446]
gi|426280395|gb|EKV57410.1| 30S ribosomal protein S3 [Brachyspira hampsonii 30446]
Length = 245
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R I I R V+G KG+R+ + + VQK K P V
Sbjct: 62 KESFDPAISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTAVQKMVKKP---VHF 118
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ + L A A+++ +L +A RRA V+ M+ GAKG KV+
Sbjct: 119 SITEIRDAELDATLAAQNVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 170
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
SG+L A A++ ++K+G + N ID L G++GIKV I
Sbjct: 171 SGRLAGADIARTEQYKNGSVPLHTLRAN--IDYGTAEALTTFGIIGIKVWI 219
>gi|337754255|ref|YP_004646766.1| 30S ribosomal protein S3 [Francisella sp. TX077308]
gi|336445860|gb|AEI35166.1| SSU ribosomal protein S3p (S3e) [Francisella sp. TX077308]
Length = 222
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L S V K
Sbjct: 38 KVREFLHKKLASAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRSDVNKLMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A A+S+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVADSVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D + L G++G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYSTAQALTTYGIIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|167626800|ref|YP_001677300.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254875930|ref|ZP_05248640.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167596801|gb|ABZ86799.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254841951|gb|EET20365.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 222
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLASAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRADVNKLMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A A+S+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVADSVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L G++G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATSKALTTYGIIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|170060367|ref|XP_001865771.1| ribosomal protein S3 [Culex quinquefasciatus]
gi|167878835|gb|EDS42218.1| ribosomal protein S3 [Culex quinquefasciatus]
Length = 225
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
+ S P N Y+D+A HVLLR GVLG+ VK ML WD K + PL D ++ L
Sbjct: 111 VFSVPNPCNVYVDTATHHVLLRPGVLGVMVKTMLLWDAKVNK----PLSDNISKRRLVAS 166
Query: 225 VYVAPATATSIE 236
+++ + S+E
Sbjct: 167 IHLVHLLSGSLE 178
>gi|387885959|ref|YP_006316258.1| 30S ribosomal protein S3 [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386870775|gb|AFJ42782.1| 30S ribosomal protein S3 [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 222
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R V+G+KG + +L + V K
Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRADVNKLMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A A+S+ +L + RRA ++ M+SGAKG
Sbjct: 98 P---VQINIEEVRKPEIDAKLVADSVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 149
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +DG + P+ + +D A L G++G+KV
Sbjct: 150 ---KIMVSGRLGGAEIARSEWARDGRV-----PLQTFRADVDYATSKALTTYGIIGVKVW 201
Query: 196 I 196
I
Sbjct: 202 I 202
>gi|225948|prf||1404256A ribosomal protein HS4
Length = 83
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 52/82 (63%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ G+ ++++E ELA GY +E+ TP+ +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGSMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVEL 86
IR++T+ +++RF + +++
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV 82
>gi|359417826|ref|ZP_09209890.1| 30S ribosomal protein S3P [Candidatus Haloredivivus sp. G17]
gi|358031816|gb|EHK00656.1| 30S ribosomal protein S3P [Candidatus Haloredivivus sp. G17]
Length = 73
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSG-VEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
++++F+ G +LNE L EL GYSG +++ TP T+I++ A R V+G G R
Sbjct: 2 QEKQFIEKGAQKVKLNEFLQDELEGAGYSGNFDLQRTPTSTKIVVEAQRPGLVIGRGGSR 61
Query: 66 IRELTSVVQKR 76
IRELTS +R
Sbjct: 62 IRELTSAPGRR 72
>gi|313680509|ref|YP_004058248.1| 30S ribosomal protein S3 [Oceanithermus profundus DSM 14977]
gi|313153224|gb|ADR37075.1| SSU ribosomal protein S3P [Oceanithermus profundus DSM 14977]
Length = 247
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E++ E+A G + +++ + + A + ++G G I+ + + +QK F
Sbjct: 38 KVRELIENEVAHGGIARIDIERAADNLSVTVHAAKPGVIIGRGGETIKRMRAELQK--MF 95
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P ++ L ++V N L A A+ + ++ AVRRA ++ ++ESGA+G
Sbjct: 96 PNRTIALNVQEVGNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVVESGAQGA----- 150
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
KV+VSG++ A++A++ DG + N ID GVLG+K I
Sbjct: 151 ---KVVVSGRIGGAEQARTEWSSDGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYIF 204
>gi|452994637|emb|CCQ93744.1| ribosomal protein S3 (BS3) [Clostridium ultunense Esp]
Length = 221
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
++ A+ F A L+E L +LA+ G S +E+ R + + + V+G+ G
Sbjct: 21 RWYAEKDFAALLHEDLKIRKFLEEKLADAGISHIEIERAANRLNLTLHTAKPGMVIGKGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ I L + + K + V + ++ L A AES+ +L ++ RRA +
Sbjct: 81 QEIENLRNAIS---KMTDKKVHINVNEIKKPDLDAKLVAESIAKQLENRVSFRRAMKQAM 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ +M +GAKG KV VSG+L A+ A++ + +G + P++ ID A
Sbjct: 138 QRVMRAGAKGV--------KVAVSGRLGGAEIARTEGYSEGTV-----PLHTLRADIDFA 184
Query: 180 VRHVLLRQGVLGIKVKI 196
+ GV+G+KV I
Sbjct: 185 IEEAHTTYGVIGVKVWI 201
>gi|406965930|gb|EKD91514.1| 30S ribosomal protein S3 [uncultured bacterium]
Length = 213
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 17/193 (8%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
K +F+ + + ++ EVL ++L G S +E+ + +III R ++G G +
Sbjct: 28 KYHQFLGEDI---KIREVLMKKLRPAGISNIEIERAINKLKIIIFVARPGVLIGRGGAGL 84
Query: 67 RELTSVVQKRFKFP-ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF 125
EL + K K E S+E+ V N + A A+++ +L L R L
Sbjct: 85 TELKKFIMKTLKIKEEGSLEIVPMDVKNPDMSAYLVAQNIAEQLARRLPAARVMNQSLDR 144
Query: 126 IMESGAKGCEFNFLVSSKVIVSGKLRAQRA--KSMKFKDGYMISSGQPVNEYIDSAVRHV 183
+M +GAKG KV+VSG++ + KF + + + ID AV
Sbjct: 145 VMNAGAKGV--------KVVVSGRIGGAEIARRESKFAGSIPLHT---LRADIDFAVYPA 193
Query: 184 LLRQGVLGIKVKI 196
L + G +G+KV I
Sbjct: 194 LTKSGYVGVKVWI 206
>gi|384438867|ref|YP_005653591.1| hypothetical protein [Thermus sp. CCB_US3_UF1]
gi|359290000|gb|AEV15517.1| hypothetical protein TCCBUS3UF1_4690 [Thermus sp. CCB_US3_UF1]
Length = 239
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ EVLT+EL G + +++ + + + V+G G +I+ L + K
Sbjct: 39 IREVLTKELYPAGLARIDIERAADNVAVTVHVAKPGVVIGRGGEKIKVLRDTLAK---LT 95
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V L ++++N L A A+ + ++ AVRRA ++ +MESGAKG
Sbjct: 96 GKNVALNVQEIHNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG------- 148
Query: 141 SSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
+KVIVSG++ A++A++ +G + N ID GVLG+K + L
Sbjct: 149 -AKVIVSGRIGGAEQARTEWAAEGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYVFL 204
>gi|290559289|gb|EFD92626.1| KH type 2 domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 223
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K + D V E L ++ G S +++ TP+ +III+ + ++ + +RE
Sbjct: 4 KKIITDKVNEESAREYLFKKFNRFGISDIKIEKTPLGMKIIIKTPKPGAIITRANQILRE 63
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ + + FK +E+ N IA + + + G + + + + IM
Sbjct: 64 SSKDLGEFFKQESPRIEVENSLDPNLDPAIIADSIAFKIAKFGPMKYKVVIHKAMDSIMA 123
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFK--DGYMISSGQPVNEYIDSAVRHVLLR 186
+GAKG E G + +RA KF+ M +GQ + +A + ++L+
Sbjct: 124 AGAKGVEIEI---------GGVIKERAAHFKFRPIGSVMPKTGQVEFFGVRTAKKQLVLK 174
Query: 187 QGVLGIKVKIMLEWDQKG 204
+G +GIKV I++ + G
Sbjct: 175 RGSIGIKVTIVVPTETVG 192
>gi|303233154|ref|ZP_07319827.1| ribosomal protein S3 [Atopobium vaginae PB189-T1-4]
gi|302480739|gb|EFL43826.1| ribosomal protein S3 [Atopobium vaginae PB189-T1-4]
Length = 236
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 16/196 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + L + LA+ S VE+ + ++ I +R V+G+KG I +L + VQ+
Sbjct: 38 EIRKYLKKRLAKAALSRVEIERAGDKVKVSILTSRPGIVIGKKGGEIDDLRNDVQRIAGL 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P+ SV + ++ L A A+ + +L G +A RRA ++ ++GAKG
Sbjct: 98 PKGSVHVEVVEIKQPDLDAQLTADRIAEQLEGRVAFRRAVRKAVQAATKAGAKGI----- 152
Query: 140 VSSKVIVSGKLRAQRAKSMKF-KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
++ SG+L +++ ++G + + ID A G +GIKV I L
Sbjct: 153 ---RIQCSGRLNGAEMGRVEWSREGRVPL--HTLRAKIDFATATASTTMGAVGIKVWIYL 207
Query: 199 EWDQKGKQGPTTPLPD 214
G++ P P P+
Sbjct: 208 -----GEKLPGQPAPN 218
>gi|269986910|gb|EEZ93186.1| KH type 2 domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 223
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
+K VA+ V E L ++ + G S + + TP+ +I+I+ + ++ + +RE
Sbjct: 4 KKIVANRVNDETAREYLFKKFSRFGISDIRIEKTPLGMKIVIKTPKPGAIITRANQILRE 63
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ + + F +E+ + N +A + + + G + + + + IM
Sbjct: 64 SSKELGEYFNQESPRIEVEGSQDPNLDPAIVADSIAFKIAKYGPMKYKVVAHKAMDSIMS 123
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFK--DGYMISSGQPVNEYIDSAVRHVLLR 186
+GA+G E G + +RA KF+ M +GQ + SA + ++L+
Sbjct: 124 AGARGVEIEI---------GGVIKERAAHFKFRPTGSVMPKTGQVEFFGVRSAKKQLVLK 174
Query: 187 QGVLGIKVKIMLEWDQKG 204
+G +GIKV I++ + G
Sbjct: 175 RGSIGIKVTIVVPTENIG 192
>gi|296126871|ref|YP_003634123.1| 30S ribosomal protein S3 [Brachyspira murdochii DSM 12563]
gi|296018687|gb|ADG71924.1| ribosomal protein S3 [Brachyspira murdochii DSM 12563]
Length = 245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R I I R V+G KG+R+ + + VQK K P V
Sbjct: 62 KESFDPAISDIQIVRFPDRINIFISTARAGVVIGPKGQRVETVKTAVQKMVKKP---VHF 118
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ + L A A+S+ +L +A RRA V+ M+ GAKG KV+
Sbjct: 119 SITEIRDAELDAALAAQSVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 170
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
SG+L A A++ ++K+G + N ID L G++GIKV I
Sbjct: 171 SGRLAGADIARTEQYKNGSVPLHTLRAN--IDYGTAEALTTFGIIGIKVWI 219
>gi|300870641|ref|YP_003785512.1| 30S ribosomal protein S3 [Brachyspira pilosicoli 95/1000]
gi|404475011|ref|YP_006706442.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
gi|431808531|ref|YP_007235429.1| 30S ribosomal protein S3 [Brachyspira pilosicoli P43/6/78]
gi|434383116|ref|YP_006704899.1| 30S ribosomal protein S3 [Brachyspira pilosicoli WesB]
gi|300688340|gb|ADK31011.1| 30S ribosomal protein S3 [Brachyspira pilosicoli 95/1000]
gi|404431765|emb|CCG57811.1| 30S ribosomal protein S3 [Brachyspira pilosicoli WesB]
gi|404436500|gb|AFR69694.1| 30S ribosomal protein S1 [Brachyspira pilosicoli B2904]
gi|430781890|gb|AGA67174.1| 30S ribosomal protein S3 [Brachyspira pilosicoli P43/6/78]
Length = 245
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86
+E + S +++ P R + I R V+G KG+R+ + + VQK K P N +
Sbjct: 62 KESFDPAISDIQIVRFPDRINVFISTARVGVVVGPKGQRVEAVKAAVQKLVKKPIN---V 118
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
++ L A A+S+ +L +A RRA V+ M+ GAKG KV+
Sbjct: 119 SISEIKEAELDATLAAQSVARQLEMRVAFRRAMKSVITQAMKKGAKGI--------KVMC 170
Query: 147 SGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
SG+L A A++ ++K+G + + ID G++G+KV I
Sbjct: 171 SGRLAGADIARTEQYKNGSV--PLHTIRANIDYGTAEASTTFGIIGVKVWI 219
>gi|410696291|gb|AFV75359.1| ribosomal protein S3, bacterial type [Thermus oshimai JL-2]
Length = 239
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ E LT+EL G + +++ + + + V+G G +I+ L + K
Sbjct: 39 IREFLTKELYPAGLARIDIERAADNVAVTVHVAKPGVVIGRGGEKIKVLRDQLSK---LT 95
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V L ++++N L A A+ + ++ AVRRA ++ +MESGAKG
Sbjct: 96 GKNVALNVQEIHNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGA------ 149
Query: 141 SSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 199
KVIVSG++ A++A++ +G + N ID GVLG+K + L
Sbjct: 150 --KVIVSGRIGGAEQARTEWAAEGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYVFLG 205
Query: 200 ---WDQKGKQGPTTP 211
QK K P P
Sbjct: 206 EVIGGQKSKARPEAP 220
>gi|62263397|gb|AAX78158.1| unknown protein [synthetic construct]
Length = 224
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S +++ +I I R+ V+G+KG + +L + V K
Sbjct: 64 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI 123
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V++ E+V + A AES+ +L + RRA ++ M+SGAKG
Sbjct: 124 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGI----- 175
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDG 163
K++VSG+L A+ A+S +DG
Sbjct: 176 ---KIMVSGRLGGAEIARSEWARDG 197
>gi|406994551|gb|EKE13532.1| hypothetical protein ACD_13C00010G0018 [uncultured bacterium]
Length = 217
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 24/210 (11%)
Query: 1 MATQISKKRKFVADGVFFA-------ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRAT 53
+ T + K ++ AD F ++ E LT++L G +GVE+ P +II +
Sbjct: 12 VGTFLPWKSRWFADSASFKNFLIEDIKIREELTKKLKLAGVTGVEIERLPKSMVVIITVS 71
Query: 54 RTQNVLGEKGRRIRELTSVVQK------RFKFPENSVELYAEKVNNRGLCAIAQAESLRY 107
R V+G G I ++ + K + + +++ +V N L A A+ +
Sbjct: 72 RPGVVIGHGGTGIEDVKKFILKIMSDVRKKAVKDIKIDIRINEVKNPELSAYLVADRIAG 131
Query: 108 KLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMI 166
++ + RRA + +M GA G KV+++G++ A+ ++ F +G +
Sbjct: 132 EMERRIPHRRAVQKAIERVMAGGALGI--------KVVLAGRINGAEISRVETFHEGSV- 182
Query: 167 SSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
Q + E ID A LL++G +G+KV I
Sbjct: 183 -PAQTLRENIDYAQIPALLKRGYVGVKVWI 211
>gi|218294760|ref|ZP_03495614.1| ribosomal protein S3 [Thermus aquaticus Y51MC23]
gi|218244668|gb|EED11192.1| ribosomal protein S3 [Thermus aquaticus Y51MC23]
Length = 239
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ + LT+EL G + V++ + + + V+G G +I+ L + K
Sbjct: 38 QIRDYLTKELYPAGLARVDIERAADNVAVSVHVAKPGVVIGRGGEKIKVLRDALAK---L 94
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+V L ++++N L A A+ + ++ AVRRA ++ +MESGAKG
Sbjct: 95 TGKNVALNVQEIHNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG------ 148
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
+KVIVSG++ A++A++ +G + Q + ID GVLG+K + L
Sbjct: 149 --AKVIVSGRIGGAEQARTEWAAEGRVPL--QTLRANIDYGFALARTTYGVLGVKAYVFL 204
>gi|406881487|gb|EKD29536.1| 30S ribosomal protein S3 [uncultured bacterium (gcode 4)]
Length = 210
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 42 TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 101
T T I+I ++T VLG+ G + +L +QK F + ++V L A
Sbjct: 60 TDSETSIVIYTSKTAFVLGKNGENLTKLEEEIQKNF---PGKYAIEVKEVKKPELSASLV 116
Query: 102 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKF 160
A+S+ ++ L RR L ME G G KVI+SG+L A+ A++ +
Sbjct: 117 ADSIARQIEKKLPYRRVVKNALVKTMEKGGLGI--------KVILSGRLNGAEIARTETY 168
Query: 161 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKG 204
KDG + Q + ID ++ GV+G+KV W KG
Sbjct: 169 KDGAI--PRQTIRSDIDYSIERANTIYGVIGMKV-----WIYKG 205
>gi|320160420|ref|YP_004173644.1| 30S ribosomal protein S3 [Anaerolinea thermophila UNI-1]
gi|319994273|dbj|BAJ63044.1| 30S ribosomal protein S3 [Anaerolinea thermophila UNI-1]
Length = 225
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 25 LTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
L RE+AE+ G S VEV P + +I+ + ++G KG +++L ++
Sbjct: 42 LVREIAENAGVSRVEVERFPGKVRVIVFTAKPGILIGRKGESVKKLRQDLEA---LTGKK 98
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
++L +++ N A+ AE+L ++ ++ RRA L+ M GAKG K
Sbjct: 99 IDLEIKEIKNPDTDALLVAENLASQIERRVSYRRAMKRALQQAMRQGAKGI--------K 150
Query: 144 VIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQ 202
V V G+L A+ ++S+ ++G + Q + ID A L G +G+KV W
Sbjct: 151 VEVQGRLSGAEMSRSVWLREGRV--PLQTLRADIDFARAEALTTYGRIGVKV-----WVY 203
Query: 203 KGKQGP 208
KG+ P
Sbjct: 204 KGEMAP 209
>gi|384938265|ref|ZP_10029957.1| 30S ribosomal protein S3 [Mycoplasma canis UF31]
gi|419704931|ref|ZP_14232475.1| 30S ribosomal protein S3 [Mycoplasma canis UF33]
gi|419705576|ref|ZP_14233114.1| 30S ribosomal protein S3 [Mycoplasma canis UFG1]
gi|419706225|ref|ZP_14233756.1| 30S ribosomal protein S3 [Mycoplasma canis UFG4]
gi|384392919|gb|EIE39372.1| 30S ribosomal protein S3 [Mycoplasma canis UF33]
gi|384393226|gb|EIE39677.1| 30S ribosomal protein S3 [Mycoplasma canis UF31]
gi|384394879|gb|EIE41313.1| 30S ribosomal protein S3 [Mycoplasma canis UFG1]
gi|384395030|gb|EIE41463.1| 30S ribosomal protein S3 [Mycoplasma canis UFG4]
Length = 216
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAES 104
+ ++I + VLG++G+ I+ELT+ +QK K +V L ++ L A AE
Sbjct: 64 KVTVLIHTVKPAAVLGQEGKNIQELTTKLQKFVKNRHLNVNLQVLELKKPDLNAKLLAEM 123
Query: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDG 163
+ KL + R A +R M++GAKG K +VSG+L A+S + +G
Sbjct: 124 IATKLENRESFRSAQKIAIRLAMKAGAKGI--------KTMVSGRLNGVDMARSEGYSEG 175
Query: 164 YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
M + + +D A G +GIKV + L
Sbjct: 176 EM--KLHTLRQDVDYATATARTTYGAIGIKVWVSL 208
>gi|320451294|ref|YP_004203390.1| 30S ribosomal protein S3 [Thermus scotoductus SA-01]
gi|320151463|gb|ADW22841.1| 30S ribosomal protein S3 [Thermus scotoductus SA-01]
Length = 239
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ EVLT+EL G + +++ + + + V+G G +I+ L + +
Sbjct: 39 IREVLTKELYPAGLARIDIERAADNVAVTVHVAKPGVVIGRGGEKIKVLRDTLSQ---LT 95
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V L ++++N L A A+ + ++ AVRRA ++ +ME+GAKG
Sbjct: 96 GKNVALNVQEIHNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMEAGAKG------- 148
Query: 141 SSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 199
+KVIVSG++ A++A++ +G + N ID GVLG+K + L
Sbjct: 149 -AKVIVSGRIGGAEQARTEWAAEGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYVFLG 205
Query: 200 ---WDQKGKQGPTTP 211
QK K P P
Sbjct: 206 EVIGGQKPKARPEGP 220
>gi|419704283|ref|ZP_14231833.1| 30S ribosomal protein S3 [Mycoplasma canis PG 14]
gi|384393071|gb|EIE39523.1| 30S ribosomal protein S3 [Mycoplasma canis PG 14]
Length = 216
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAES 104
+ ++I + VLG++G+ I+ELT+ +QK K +V L ++ L A AE
Sbjct: 64 KVTVLIHTVKPAAVLGQEGKNIQELTTKLQKFVKNRHLNVNLQVLELKKPDLNAKLLAEM 123
Query: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDG 163
+ KL + R A +R M++GAKG K +VSG+L A+S + +G
Sbjct: 124 IAAKLENRESFRSAQKIAIRLAMKAGAKGI--------KTMVSGRLNGVDMARSEGYSEG 175
Query: 164 YMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
M + + +D A G +GIKV + L
Sbjct: 176 EM--KLHTLRQDVDYATATARTTYGAIGIKVWVSL 208
>gi|406875985|gb|EKD25679.1| ribosomal protein S3 [uncultured bacterium (gcode 4)]
Length = 222
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 28/209 (13%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAED-----GYSGVEVRVTPVRTEIIIRATRTQ 56
A +K ++ AD FF E +V R+ +D G S V +R T EIII +++
Sbjct: 20 AEWFAKYKRTGAD--FFVE--DVKMRKFVDDTFGRSGISKVIIRKTAKEWEIIIFSSKVG 75
Query: 57 NVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVR 116
++G++ +I+E ++K+F +++ ++V L A AE + +L + R
Sbjct: 76 VLMGKQWEKIKEFEEALKKKF---NKDMKVVIKEVKIPELSAKIMAEFIASQLEARMPFR 132
Query: 117 RACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY 175
+ VL+ +ME A G K+ V G+L ++S KF +G + S Q
Sbjct: 133 KVAKNVLQKVMEKWAAGI--------KIQVGGRLGWVDISRSEKFIEGRV--SLQTFRSD 182
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKG 204
ID + G+LG+KV W +KG
Sbjct: 183 IDFYYLQARTKYGMLGVKV-----WIEKG 206
>gi|384487444|gb|EIE79624.1| hypothetical protein RO3G_04329 [Rhizopus delemar RA 99-880]
Length = 46
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 158 MKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQK 203
MKF DG+M+ SG E++ +AV HV L Q VLGIKVK L D K
Sbjct: 1 MKFVDGFMMHSGNFAREFMTTAVCHVDLCQAVLGIKVKSRLNNDPK 46
>gi|297567278|ref|YP_003686250.1| 30S ribosomal protein S3 [Meiothermus silvanus DSM 9946]
gi|296851727|gb|ADH64742.1| ribosomal protein S3 [Meiothermus silvanus DSM 9946]
Length = 250
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ ++ +ELA G + +++ + + A + V+G G I+ L +Q KF
Sbjct: 38 QIRSLIEKELAPAGLARIDIERAADNVAVTVYAAKPGVVIGRGGETIKRLRETLQN--KF 95
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P +V L ++V N L A A+ + ++ AVRRA ++ I ESGA G
Sbjct: 96 PGKTVALNVQEVGNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRIRESGALGA----- 150
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
K++VSG++ A++A++ +G + N +D G LG+KV + +
Sbjct: 151 ---KIVVSGRIGGAEQARTEWAAEGRVPLHTLRAN--LDYGTARAETTYGSLGVKVYVFM 205
>gi|406994603|gb|EKE13584.1| hypothetical protein ACD_13C00010G0070 [uncultured bacterium]
Length = 217
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 28/212 (13%)
Query: 1 MATQISKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRAT 53
+ T + K ++ AD F + + + LT++L G +GVE+ +P + I +
Sbjct: 12 IGTFLPWKSRWFADNNSFKQFLIEDIRIRKELTKKLKLAGITGVEIERSPKSIVVTITVS 71
Query: 54 RTQNVLGEKGRRIRE--------LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESL 105
R V+G G I + + V +K K + +++ +V + L A AE +
Sbjct: 72 RPGVVIGRGGTGIEDVKKYILGIMNDVRKKTVK--DLKIDIRINEVKSPELSAYLVAERI 129
Query: 106 RYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGY 164
++ + RRA + +M SGA G KV+++G++ A+ ++ KF G
Sbjct: 130 VSEMERRIPHRRAVQKAIERVMASGALGI--------KVVLAGRINGAEISRVEKFHQGS 181
Query: 165 MISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+ S Q + E ID A LL++G +G+KV I
Sbjct: 182 VPS--QTLRENIDYAQVPALLKRGYVGVKVWI 211
>gi|184155985|ref|YP_001844325.1| 30S ribosomal protein S3 [Lactobacillus fermentum IFO 3956]
gi|227515493|ref|ZP_03945542.1| ribosomal protein S3 [Lactobacillus fermentum ATCC 14931]
gi|260662758|ref|ZP_05863652.1| 30S ribosomal protein S3 [Lactobacillus fermentum 28-3-CHN]
gi|183227329|dbj|BAG27845.1| 30S ribosomal protein S3 [Lactobacillus fermentum IFO 3956]
gi|227086106|gb|EEI21418.1| ribosomal protein S3 [Lactobacillus fermentum ATCC 14931]
gi|260552839|gb|EEX25838.1| 30S ribosomal protein S3 [Lactobacillus fermentum 28-3-CHN]
Length = 219
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD + A LNE L + LA+ S VE+ R + I + V+G+ G
Sbjct: 21 KWYADKNYAAYLNEDLRIRKYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL ++ KR N VE+ L A ES+ +L +A RRA
Sbjct: 81 SEVEALRKELNNLTNKRVHI--NVVEIKKPD-----LDAHLVGESVAEQLENRIAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY--- 175
G ++ M +GAKG K+ V+G+L A ++ + DG + P++
Sbjct: 134 RGAMQRTMRAGAKGI--------KIQVAGRLNGADMSRIESYSDGTV-----PLHTLRAD 180
Query: 176 IDSAVRHVLLRQGVLGIKVKI 196
ID + GVLGIK I
Sbjct: 181 IDYSWDEAHTTYGVLGIKTWI 201
>gi|406942220|gb|EKD74509.1| hypothetical protein ACD_44C00423G0009 [uncultured bacterium]
Length = 223
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 14/174 (8%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84
+ +E A G S V ++ +II+ A R ++G+KG + + + V K P V
Sbjct: 42 IQKEWASAGISRVYIKRPAKNAQIIVYAARPGIIIGKKGEEVERVRAHVSKLMGIP---V 98
Query: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKV 144
L E+V L A AE++ +L + RRA + M SGAKG + N
Sbjct: 99 HLAIEEVRKPELDAKLVAETVAQQLEKRIMFRRAMKRAVTSAMRSGAKGIKIN------- 151
Query: 145 IVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
VSG+L A+ A++ +++G + + +D + GV+G+KV I
Sbjct: 152 -VSGRLGGAEIARNEWYREGRV--PLHTLRAEVDYGTAEAMTTYGVIGVKVWIF 202
>gi|406910928|gb|EKD50831.1| hypothetical protein ACD_62C00417G0009 [uncultured bacterium]
Length = 209
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+++ + L G S +E+ + +I I +R V+G+KG I +L + +Q K
Sbjct: 38 FRKIIKKNLYSMGVSHIEMERAATKLKITIHTSRPGLVIGKKGSGIDQLRNDLQ---KLT 94
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+N V L ++V L A AE++ +L +A RRA ++ M+ GA+G
Sbjct: 95 KNQVFLNIQEVRKAELDAQLVAENIALQLERRVAFRRAMKKSVQTTMKFGARGI------ 148
Query: 141 SSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
KV+ SG+L A+ A+ +++G + N ID L G++G++V I
Sbjct: 149 --KVMCSGRLAGAEIARREWYREGQVPLHTLRAN--IDYGFAEALTTYGIIGVRVWI 201
>gi|254455646|ref|ZP_05069075.1| ribosomal protein S3 [Candidatus Pelagibacter sp. HTCC7211]
gi|207082648|gb|EDZ60074.1| ribosomal protein S3 [Candidatus Pelagibacter sp. HTCC7211]
Length = 226
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 6 SKKRKFVADGVFFAE---LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+KK+ F G + E + E + + + G S V + T + + I +R V+G+K
Sbjct: 24 AKKKDF---GNYLIEDFKIREYIKKNVINSGVSKVMIERTSNKCYVTIYTSRPGFVIGKK 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G I ++ + + K F N V L ++V A AE++ +L+ ++ RRA
Sbjct: 81 GSDIDKIKNNLSK---FTTNEVALNIKEVKKPETNAYLVAENIAQQLVKRISYRRAMKRA 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQR-AKSMKFKDGYMISSGQPVNEYIDSAVR 181
++ + GA+G KV VSG+L A++ +DG + S + ID A
Sbjct: 138 MQSCIRLGARGI--------KVSVSGRLGGNEIARTEWLRDGSIPS--HTLRADIDYAEA 187
Query: 182 HVLLRQGVLGIKVKI 196
L G++GIKV I
Sbjct: 188 EALTTYGIIGIKVWI 202
>gi|227501140|ref|ZP_03931189.1| ribosomal protein S3 [Anaerococcus tetradius ATCC 35098]
gi|227216725|gb|EEI82126.1| ribosomal protein S3 [Anaerococcus tetradius ATCC 35098]
Length = 239
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 10 KFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ AD F+EL +++ +E+ + G + +E+ +I I A + V+G+
Sbjct: 21 KWFADKKDFSELLVEDYNIRKIVKKEVYDAGIADIEIERAVNNLKITIFAAKPGMVIGKG 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G + EL ++K P + + E++ + L A AES+ +L +A RRA
Sbjct: 81 GAGVEELKKKLEK--AAPSKRIIINVEEIKYQDLAAQLVAESIASQLENRVAFRRAMKQS 138
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
++ M +GAKG K +VSG+L A A+S + +G + Q + ID
Sbjct: 139 IQRTMRAGAKGI--------KTMVSGRLGGADMARSEGYSEGTI--PLQTLRANIDYGFA 188
Query: 182 HVLLRQGVLGIKVKI 196
G +G KV I
Sbjct: 189 EADTEYGKIGCKVWI 203
>gi|47459076|ref|YP_015938.1| 30S ribosomal protein S3 [Mycoplasma mobile 163K]
gi|61215555|sp|Q6KI49.1|RS3_MYCMO RecName: Full=30S ribosomal protein S3
gi|47458405|gb|AAT27727.1| 30S ribosomal protein s3 [Mycoplasma mobile 163K]
Length = 225
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 48 IIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRY 107
+++ + + +LG+ G I +LT +QK + E + + + N L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 108 KLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDGYMI 166
KL R A +R M+SGAKG K VSG+L A+S + +G M
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGI--------KTQVSGRLNGVDMARSEGYSEGEM- 177
Query: 167 SSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK 205
+ + +D A+ G +G+KV W KG+
Sbjct: 178 -KLHTLRQDVDFAMATARTTYGAIGVKV-----WVSKGE 210
>gi|46199624|ref|YP_005291.1| 30S ribosomal protein S3 [Thermus thermophilus HB27]
gi|55981655|ref|YP_144952.1| 30S ribosomal protein S3 [Thermus thermophilus HB8]
gi|381191145|ref|ZP_09898656.1| 30S ribosomal protein S3 [Thermus sp. RL]
gi|384431866|ref|YP_005641226.1| 30S ribosomal protein S3 [Thermus thermophilus SG0.5JP17-16]
gi|386359809|ref|YP_006058054.1| 30S ribosomal protein S3 [Thermus thermophilus JL-18]
gi|24212666|sp|P80372.3|RS3_THET8 RecName: Full=30S ribosomal protein S3
gi|50401227|sp|P62663.2|RS3_THET2 RecName: Full=30S ribosomal protein S3
gi|10835587|pdb|1FJG|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
gi|13096396|pdb|1HR0|C Chain C, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
gi|13399794|pdb|1HNW|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
gi|13399816|pdb|1HNX|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
gi|13399838|pdb|1HNZ|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
gi|14278012|pdb|1GIX|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
gi|14278058|pdb|1IBK|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
gi|14278079|pdb|1IBL|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
gi|14278103|pdb|1IBM|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
gi|15826122|pdb|1JGO|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|15826147|pdb|1JGP|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|15826172|pdb|1JGQ|F Chain F, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
gi|20663888|pdb|1J5E|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
gi|27065878|pdb|1N32|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
gi|27065905|pdb|1N33|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
gi|27065932|pdb|1N34|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
gi|27065958|pdb|1N36|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
gi|28373701|pdb|1ML5|F Chain F, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
gi|58177402|pdb|1XMO|C Chain C, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
gi|58177425|pdb|1XMQ|C Chain C, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
gi|58177466|pdb|1XNQ|C Chain C, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
gi|58177489|pdb|1XNR|C Chain C, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
gi|66361056|pdb|1YL4|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
gi|88192238|pdb|2B64|C Chain C, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
gi|88192301|pdb|2B9M|C Chain C, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
gi|88192357|pdb|2B9O|C Chain C, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
gi|110591325|pdb|2F4V|C Chain C, 30s Ribosome + Designer Antibiotic
gi|116667656|pdb|2HHH|C Chain C, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
gi|116668199|pdb|2J00|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 1 Of 4).
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule I.
gi|116668260|pdb|2J02|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 3 Of 4)
This File Contains The 30s Subunit, Mrna, A-, P- And
E-Site Trnas And Paromomycin For Molecule Ii.
gi|119389714|pdb|2HGI|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
gi|119389771|pdb|2HGP|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
gi|119389827|pdb|2HGR|F Chain F, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
gi|149242710|pdb|2OW8|DD Chain d, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
2ow8, Contains The 30s Ribosome Subunit, Two Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File
1vsa.
gi|149243620|pdb|2UU9|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gug-codon In The
A-site And Paromomycin.
gi|149243647|pdb|2UUA|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guc-Codon In The
A-Site And Paromomycin.
gi|149243674|pdb|2UUB|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-Asl With Cmo5u In
Position 34 Bound To An Mrna With A Guu-Codon In The
A-Site And Paromomycin.
gi|149243701|pdb|2UUC|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Valine-asl With Cmo5u In
Position 34 Bound To An Mrna With A Gua-codon In The
A-site And Paromomycin.
gi|149243840|pdb|2UXC|C Chain C, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Ucgu In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|157836410|pdb|2UXB|C Chain C, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Gggu In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|157836487|pdb|2V46|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 1 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 1.
gi|157836543|pdb|2V48|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 3 Of 4). This File Contains The 30s
Subunit, Mrna, P-Site Asl, E-Site Trna And Rrf For
Molecule 2.
gi|158430902|pdb|2UXD|C Chain C, Crystal Structure Of An Extended Trna Anticodon Stem Loop
In Complex With Its Cognate Mrna Cggg In The Context Of
The Thermus Thermophilus 30s Subunit.
gi|160285941|pdb|2QNH|DD Chain d, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 2qnh, Contains The 30s
Ribosome Subunit, Two Trna, And Mrna Molecules. 50s
Ribosome Subunit Is In The File 1vsp.
gi|186972851|pdb|2VQE|C Chain C, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
gi|186972874|pdb|2VQF|C Chain C, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
gi|209156498|pdb|3D5A|C Chain C, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
gi|209156554|pdb|3D5C|C Chain C, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
gi|218766775|pdb|3F1E|C Chain C, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
gi|218766831|pdb|3F1G|C Chain C, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
gi|226887376|pdb|2WDG|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule I.
gi|226887401|pdb|2WDH|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 30s Subunit A-,P-, And E-Site Trnas And
Paromomycin For Molecule Ii.
gi|226887490|pdb|2WDK|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule I.
gi|226887547|pdb|2WDM|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 30s
Subunit A-,P-, And E-Site Trnas And Paromomycin For
Molecule Ii.
gi|237823531|pdb|2WH1|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
gi|237823590|pdb|2WH3|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit.
gi|260099988|pdb|3HUW|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule I.
gi|260100044|pdb|3HUY|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 30s Subunit, Mrna, P-Site Trna And Ef-P For
Molecule Ii.
gi|261824486|pdb|2WRI|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
gi|261824548|pdb|2WRK|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
gi|261824610|pdb|2WRN|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
gi|261824669|pdb|2WRQ|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4).
gi|281307169|pdb|3KIQ|CC Chain c, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 1 Of 4)
gi|281307227|pdb|3KIS|CC Chain c, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 3 Of 4)
gi|281307285|pdb|3KIU|CC Chain c, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 1 Of 4)
gi|281307343|pdb|3KIX|CC Chain c, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 3 Of 4)
gi|288965606|pdb|3KNH|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule I
gi|289526684|pdb|3KNJ|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 30s Subunit For Molecule Ii'
gi|289526709|pdb|3KNL|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule I
gi|289526734|pdb|3KNN|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
This File Contains The 30s Subunit For Molecule Ii
gi|294979506|pdb|3I8G|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8g Contains 30s Ribosomal Subnit.The 50s
Ribosomal Can Be Found In Pdb Entry 3i8f. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
gi|294979531|pdb|3I8H|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8h Contains 30s Ribosomal Subnit. The 50s
Ribosomal Can Be Found In Pdb Entry 3i8i. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
gi|294979590|pdb|3I9B|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9b Contains 30s Ribosomal Subunit Of Molecule B.
The 50s Subunit Can Be Found In Pdb Entry 3i9c. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
gi|294979644|pdb|3I9D|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9d Contains 30s Ribosomal Subunit Of Molecule A.
The 50s Subunit Can Be Found In Pdb Entry 3i9e. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
gi|295982077|pdb|2X9R|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|295982136|pdb|2X9T|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
gi|307567964|pdb|2XFZ|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
gi|307568022|pdb|2XG1|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
gi|307776614|pdb|3OTO|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
gi|309320237|pdb|3OGE|C Chain C, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|309320258|pdb|3OGY|C Chain C, Structure Of The Thermus Thermophilus Ribosome Complexed
With Chloramphenicol. This File Contains The 30s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
gi|309320339|pdb|3OHC|C Chain C, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320360|pdb|3OHD|C Chain C, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 30s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
gi|309320441|pdb|3OHY|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320492|pdb|3OI0|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320543|pdb|3OI2|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|309320594|pdb|3OI4|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 30s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|312207675|pdb|2XQD|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
gi|313754001|pdb|2XSY|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
gi|313754116|pdb|2XUY|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
gi|325533404|pdb|2Y0U|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533463|pdb|2Y0W|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
gi|325533522|pdb|2Y0Y|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533581|pdb|2Y10|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|325533640|pdb|2Y12|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
gi|325533699|pdb|2Y14|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
gi|325533758|pdb|2Y16|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
gi|325533817|pdb|2Y18|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
gi|347948797|pdb|3ZVO|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
gi|374074265|pdb|3T1H|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
gi|374074290|pdb|3T1Y|C Chain C, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
gi|374074507|pdb|3UXS|C Chain C, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
gi|374074528|pdb|3UXT|C Chain C, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.'
gi|380764244|pdb|3TVF|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
gi|380764269|pdb|3TVG|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
gi|380764346|pdb|3UYD|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764402|pdb|3UYF|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
gi|380764522|pdb|3UZ3|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
gi|380764547|pdb|3UZ4|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
gi|380764573|pdb|3UZ6|F Chain F, Structure Analysis Of Ribosomal Decoding. This Entry
Contains The 30s Ribosomal Subunit Of The First 70s
Molecule In The Asymmetric Unit For The Cognate Trna-Tyr
Complex
gi|380764599|pdb|3UZ7|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
gi|380764719|pdb|3UZG|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
gi|380764775|pdb|3UZI|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
gi|380764830|pdb|3UZL|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
gi|380764856|pdb|3UZM|F Chain F, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 30s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
gi|381353090|pdb|4ABR|C Chain C, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
gi|381353194|pdb|4DH9|C Chain C, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|381353249|pdb|4DHB|C Chain C, Crystal Structure Of Yaej Bound To The 70s Ribosome
gi|388325945|pdb|3V22|C Chain C, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 1st Ribosome In The Asu
gi|388325998|pdb|3V24|C Chain C, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Rmf Of The 2nd Ribosome In The Asu
gi|388326051|pdb|3V26|C Chain C, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 1st Ribosome In The Asu
gi|388326104|pdb|3V28|C Chain C, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Hpf Of The 2nd Ribosome In The Asu
gi|388326227|pdb|3V2C|C Chain C, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 1st Ribosome In The Asu
gi|388326280|pdb|3V2E|C Chain C, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 30s Subunit With
Bound Yfia Of The 2nd Ribosome In The Asu
gi|395759336|pdb|4AQY|C Chain C, Structure Of Ribosome-Apramycin Complexes
gi|414145509|pdb|4DR1|C Chain C, Crystal Structure Of The Apo 30s Ribosomal Subunit From
Thermus Thermophilus (hb8)
gi|414145530|pdb|4DR2|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Multiple Copies Of Paromomycin
Molecules Bound
gi|414145551|pdb|4DR3|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Streptomycin Bound
gi|414145572|pdb|4DR4|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Cognate Transfer Rna
Anticodon Stem-loop And Multiple Copies Of Paromomycin
Molecules Bound
gi|414145595|pdb|4DR5|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Cognate Transfer Rna Anticodon Stem-loop And
Streptomycin Bound
gi|414145618|pdb|4DR6|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Near-cognate Transfer Rna
Anticodon Stem-loop Mismatched At The First Codon
Position And Streptomycin Bound
gi|414145643|pdb|4DR7|C Chain C, Crystal Structure Of The Thermus Thermophilus (hb8) 30s
Ribosomal Subunit With Codon, Crystallographically
Disordered Near-cognate Transfer Rna Anticodon Stem-loop
Mismatched At The Second Codon Position, And
Streptomycin Bound
gi|451928691|pdb|4G5K|F Chain F, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule A.
gi|451928744|pdb|4G5M|F Chain F, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 30s Subunit Of Molecule B.
gi|451928797|pdb|4G5T|F Chain F, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule A.
gi|451928851|pdb|4G5V|F Chain F, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 30s Subunit Of Molecule B.
gi|453055751|pdb|4DUY|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c
gi|453055772|pdb|4DUZ|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U13c, Bound
With Streptomycin
gi|453055793|pdb|4DV0|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g
gi|453055814|pdb|4DV1|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, U20g, Bound
With Streptomycin
gi|453055835|pdb|4DV2|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a
gi|453055856|pdb|4DV3|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, C912a, Bound
With Streptomycin
gi|453055877|pdb|4DV4|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g
gi|453055898|pdb|4DV5|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A914g, Bound
With Streptomycin
gi|453055919|pdb|4DV6|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g
gi|453055940|pdb|4DV7|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit With A 16s Rrna Mutation, A915g, Bound
With Streptomycin
gi|13446666|emb|CAC35062.1| ribosomal protein S3 [Thermus thermophilus HB27]
gi|46197250|gb|AAS81664.1| SSU ribosomal protein S3P [Thermus thermophilus HB27]
gi|55773068|dbj|BAD71509.1| 30S ribosomal protein S3 [Thermus thermophilus HB8]
gi|333967334|gb|AEG34099.1| ribosomal protein S3 [Thermus thermophilus SG0.5JP17-16]
gi|380450934|gb|EIA38547.1| 30S ribosomal protein S3 [Thermus sp. RL]
gi|383508836|gb|AFH38268.1| ribosomal protein S3, bacterial type [Thermus thermophilus JL-18]
Length = 239
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 24 VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
+L +EL G + V++ + + + V+G G RIR L ++ K +
Sbjct: 42 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLR---EELAKLTGKN 98
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
V L ++V N L A A+ + ++ AVRRA ++ +MESGAKG +K
Sbjct: 99 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG--------AK 150
Query: 144 VIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE--- 199
VIVSG++ A++A++ G + N ID GVLG+K I L
Sbjct: 151 VIVSGRIGGAEQARTEWAAQGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYIFLGEVI 208
Query: 200 WDQKGKQGPTTP 211
QK K P P
Sbjct: 209 GGQKPKARPELP 220
>gi|14278532|pdb|1I94|C Chain C, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
gi|14278553|pdb|1I95|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
gi|14278574|pdb|1I96|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
gi|14278596|pdb|1I97|C Chain C, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
gi|149241277|pdb|2E5L|C Chain C, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
gi|226887631|pdb|2ZM6|C Chain C, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 238
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 24 VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
+L +EL G + V++ + + + V+G G RIR L ++ K +
Sbjct: 41 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLR---EELAKLTGKN 97
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
V L ++V N L A A+ + ++ AVRRA ++ +MESGAKG +K
Sbjct: 98 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG--------AK 149
Query: 144 VIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE--- 199
VIVSG++ A++A++ G + N ID GVLG+K I L
Sbjct: 150 VIVSGRIGGAEQARTEWAAQGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYIFLGEVI 207
Query: 200 WDQKGKQGPTTP 211
QK K P P
Sbjct: 208 GGQKPKARPELP 219
>gi|344941049|ref|ZP_08780337.1| ribosomal protein S3 [Methylobacter tundripaludum SV96]
gi|344262241|gb|EGW22512.1| ribosomal protein S3 [Methylobacter tundripaludum SV96]
Length = 223
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 23 EVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82
+ + ++LA S +++ P I I R V+G+KG I L V K P
Sbjct: 41 DYIKKKLAHASVSRIQINRPPNNAHITIHTARPGIVIGKKGEDIEALRQAVSKIMGIP-- 98
Query: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSS 142
V+L E++ L A AE + +L + RRA + M GA+G + N
Sbjct: 99 -VQLNVEEIRKPELDAQLVAEGVAQQLEKRIMYRRAMKRAVTNTMRLGAEGIKIN----- 152
Query: 143 KVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKIM 197
V G+L A+ A+S +++G + P++ ID A G++GIKV I
Sbjct: 153 ---VGGRLNGAEIARSEWYREGRV-----PLHTLRADIDYATAEAHTTYGIIGIKVWIF 203
>gi|433624386|ref|YP_007258016.1| 30S ribosomal protein S3 [Mycoplasma cynos C142]
gi|429534412|emb|CCP23914.1| 30S ribosomal protein S3 [Mycoplasma cynos C142]
Length = 216
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAES 104
+ ++I R +LG++G+ I+ELT +QK K + ++ L ++ L A AE
Sbjct: 64 KVTVLIHTVRPAAILGQEGKNIQELTVKIQKYVKNRKLNLNLQVLELKKPDLNAKLLAEM 123
Query: 105 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDG 163
+ KL + R A +R M++GAKG K +VSG+L A+S + +G
Sbjct: 124 IATKLENRESFRSAQKIAIRLAMKAGAKGI--------KTMVSGRLNGVDMARSEGYSEG 175
Query: 164 YM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
M + + + EY + R G +G+KV I L
Sbjct: 176 EMKLHTLRQDVEYATATARTTY---GAIGVKVWISL 208
>gi|342210663|ref|ZP_08703419.1| 30S ribosomal protein S3 [Mycoplasma anatis 1340]
gi|341579159|gb|EGS29300.1| 30S ribosomal protein S3 [Mycoplasma anatis 1340]
Length = 217
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 37 VEVRVT-PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
VEVR T + +I+ + +LG++G+ I ELT + K K +V + ++
Sbjct: 55 VEVRRTQDNKVTVIVHTAKPAAMLGQEGKNIAELTVKLTKSIKNKNLNVNIQVVELKKPD 114
Query: 96 LCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QR 154
L A AES+ KL + R A +R M SGAKG K VSG+L
Sbjct: 115 LNARLLAESIAIKLENRESFRTAQKMAIRNAMRSGAKGI--------KTAVSGRLNGVDM 166
Query: 155 AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI----MLEWDQK 203
A++ + +G M + + +D A G +G+KV + +LE D K
Sbjct: 167 ARTEGYSEGEM--KLHTLRQNVDYATATARTTYGAIGVKVWVSLGEILEGDNK 217
>gi|34811531|pdb|1PNS|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
gi|34811587|pdb|1PNX|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
gi|56966325|pdb|1VOQ|C Chain C, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966378|pdb|1VOS|C Chain C, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966431|pdb|1VOV|C Chain C, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966484|pdb|1VOX|C Chain C, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966537|pdb|1VOZ|C Chain C, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|300508607|pdb|3MR8|C Chain C, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
gi|300508662|pdb|3MS0|C Chain C, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s).
gi|322812552|pdb|3PYN|C Chain C, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The First 70s Ribosome.
gi|322812605|pdb|3PYQ|C Chain C, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 30s Subunit Of The Second 70s
Ribosome.
gi|322812658|pdb|3PYS|C Chain C, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The First 70s Ribosome.
gi|322812711|pdb|3PYU|C Chain C, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 30s Subunit Of The Second 70s Ribosome
Length = 206
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 24 VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
+L +EL G + V++ + + + V+G G RIR L ++ K +
Sbjct: 41 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLR---EELAKLTGKN 97
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
V L ++V N L A A+ + ++ AVRRA ++ +MESGAKG +K
Sbjct: 98 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG--------AK 149
Query: 144 VIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
VIVSG++ A++A++ G + N ID GVLG+K I L
Sbjct: 150 VIVSGRIGGAEQARTEWAAQGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYIFL 203
>gi|224510697|pdb|3FIC|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
Length = 207
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 24 VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
+L +EL G + V++ + + + V+G G RIR L ++ K +
Sbjct: 41 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLR---EELAKLTGKN 97
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
V L ++V N L A A+ + ++ AVRRA ++ +MESGAKG +K
Sbjct: 98 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKG--------AK 149
Query: 144 VIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
VIVSG++ A++A++ G + N ID GVLG+K I L
Sbjct: 150 VIVSGRIGGAEQARTEWAAQGRVPLHTLRAN--IDYGFALARTTYGVLGVKAYIFL 203
>gi|377556480|ref|ZP_09786185.1| 30S ribosomal protein S3 [Lactobacillus gastricus PS3]
gi|376168408|gb|EHS87182.1| 30S ribosomal protein S3 [Lactobacillus gastricus PS3]
Length = 214
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD + A LNE L + LA+ S VE+ R + I + V+G+ G
Sbjct: 21 KWYADKDYAAYLNEDLRIREYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL ++ KR N VE + L A ES+ +L +A RRA
Sbjct: 81 SEVEALRKELNALTGKRVHI--NVVE-----IKKPDLEAHLVGESVAQQLENRVAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY--- 175
G ++ M +GAKG K+ V+G+L A ++ + DG + P++
Sbjct: 134 RGAMQRAMRAGAKGI--------KIQVAGRLNGADMSRVESYSDGTV-----PLHTLRAD 180
Query: 176 IDSAVRHVLLRQGVLGIKVKI 196
ID + GVLGIK I
Sbjct: 181 IDYSWDEAHTTYGVLGIKTWI 201
>gi|238018629|ref|ZP_04599055.1| hypothetical protein VEIDISOL_00464 [Veillonella dispar ATCC 17748]
gi|237865100|gb|EEP66390.1| hypothetical protein VEIDISOL_00464 [Veillonella dispar ATCC 17748]
Length = 221
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 31/214 (14%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F A L+E L L G S +E+ T R ++ I + V+G G
Sbjct: 21 KWYADKDFAANLHEDVKIRNFLKETLFIAGISRIEIERTNKRIKLTIHTAKPGMVIGRGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I ++ + + F + V++ ++ + AI AE++ +L + RRA +
Sbjct: 81 AGIEDIKKAMTR---FTDKQVDVNIAEIKQADMDAILVAENIAGQLERRIGFRRAMKQAV 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
M GAKG K++VSG+L A+ A+S +++G + P++ ID
Sbjct: 138 GRTMRLGAKGI--------KIMVSGRLGGAEIARSESYREGSI-----PLHTLRADIDYG 184
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
G +GIKV W KG+ P P
Sbjct: 185 TAEAHTTYGCIGIKV-----WIYKGEVLPEAKQP 213
>gi|291613242|ref|YP_003523399.1| 30S ribosomal protein S3 [Sideroxydans lithotrophicus ES-1]
gi|291583354|gb|ADE11012.1| ribosomal protein S3 [Sideroxydans lithotrophicus ES-1]
Length = 238
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 26/223 (11%)
Query: 1 MATQISKKRKFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRAT 53
++ Q + K+ ++ F+EL + L ++LA G S + + +I I
Sbjct: 12 LSVQKNWTSKWYSNSKHFSELLLKDIEVRDYLKKKLAGAGVSKIVIERPAKNAKITIYTA 71
Query: 54 RTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGL 113
R V+G+KG I L + ++KR P+ V L E+V + A A+S+ +L +
Sbjct: 72 RPGVVIGKKGEDIESLRNELKKRMGLPD--VGLNIEEVRKPEVDAQLIADSITQQLEKRI 129
Query: 114 AVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDGYMISSGQPV 172
RRA ++ M GA+G K++ SG+L + A++ +++G + P+
Sbjct: 130 MFRRAMKRAMQNAMRLGAQGI--------KIMSSGRLNGIEIARTEWYREGRV-----PL 176
Query: 173 NEY---IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPL 212
+ ID L G++G+KV + G+Q P+
Sbjct: 177 HTLRADIDYGTSEALTTYGLIGVKVWVYKGDHVAGQQEAAAPV 219
>gi|308233858|ref|ZP_07664595.1| ribosomal protein S3 [Atopobium vaginae DSM 15829]
gi|328943566|ref|ZP_08241031.1| 30S ribosomal protein S3 [Atopobium vaginae DSM 15829]
gi|327491535|gb|EGF23309.1| 30S ribosomal protein S3 [Atopobium vaginae DSM 15829]
Length = 236
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + L + LA S VE+ + +++I +R V+G+KG I +L VQK K
Sbjct: 38 EIRKYLKKRLASAALSRVEIERAGDKVKVVILTSRPGIVIGKKGTEIDDLRKDVQKIAKV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ V + ++ L A A+ + +L G +A RRA ++ ++GAKG
Sbjct: 98 GKGDVNVEVVEIKQPDLDAQLTADRIAEQLEGRVAFRRAVRKAVQGATKAGAKGI----- 152
Query: 140 VSSKVIVSGKLRAQRAKSMKF-KDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
++ SG+L +++ ++G + P++ ID A G +GIKV
Sbjct: 153 ---RIQCSGRLNGAEMGRVEWSREGRV-----PLHTLRAKIDYAQATASTTMGAVGIKVW 204
Query: 196 IMLEWDQKGKQGPTTPL 212
I L G+ P L
Sbjct: 205 IYLGEKLPGQSAPNPAL 221
>gi|386817422|ref|ZP_10104640.1| SSU ribosomal protein S3P [Thiothrix nivea DSM 5205]
gi|386421998|gb|EIJ35833.1| SSU ribosomal protein S3P [Thiothrix nivea DSM 5205]
Length = 230
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 8 KRKFVADGVFFA-------ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
+ K+ A+G +A E+ L ++L E S +++ I I R V+G
Sbjct: 19 RSKWYAEGKDYADFLHKDLEVRSFLKKKLKEASVSRIQIERPAKSAFITIHTARPGVVIG 78
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
+KG I +L + + N+V+L E++ L A AES+ +L + RRA
Sbjct: 79 KKGEDIEKLRAETASKLGLHVNNVKLNIEEIRKPELDAQLVAESIASQLECRIMFRRAMK 138
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSA 179
+ M GA G KV V+G+L A+ A++ +++G + + ID A
Sbjct: 139 RAVSNAMRLGALGV--------KVSVAGRLNGAEIARTEWYREGRV--PLHTLRADIDYA 188
Query: 180 VRHVLLRQGVLGIKVKI 196
L G++G+KV I
Sbjct: 189 TAEALTTYGIIGVKVWI 205
>gi|356960596|ref|ZP_09063578.1| SSU ribosomal protein S3P [gamma proteobacterium SCGC AAA001-B15]
Length = 230
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + L +EL S + + +III R V+G+KG I L +V +
Sbjct: 38 EVRDYLFKELTSASVSRISIERLSNTAKIIIHTARPGIVIGKKGADIERLKKIVSAKMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V + E+V L A AE++ +L + RRA VL GA G
Sbjct: 98 P---VHISIEEVKQPELDARLVAENIAQQLEKRVMYRRAVKRVLGNATRLGALGI----- 149
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++VSG+L A+ A+S +++G + P++ + +D + + GV+GIKV
Sbjct: 150 ---KIMVSGRLNGAEIARSEWYREGRV-----PLHTFRADVDYSSFSANTQHGVIGIKVW 201
Query: 196 IM 197
I
Sbjct: 202 IF 203
>gi|406983727|gb|EKE04887.1| 30S ribosomal protein S3 [uncultured bacterium]
Length = 217
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV-----QKRFKF 79
L ++L+ G VE+ P II+ +R V+G G I EL V + +
Sbjct: 43 LMKKLSVAGIVSVEIERQPKSIVIIVTVSRPGVVIGRGGSGIEELKKFVVLLLNKGKVTK 102
Query: 80 PEN-SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
EN ++L ++ N L A AE + L + RR+ + +M + A G
Sbjct: 103 TENIKIDLKVNEIKNYDLSAYLVAERIAQDLEKRIPHRRSVTKAMERVMMARAGGI---- 158
Query: 139 LVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
K++++G++ A+ A+ KF G + + Q + E ID A R L ++G +G+KV I
Sbjct: 159 ----KIVLAGRINGAEIARIEKFHQGSVPT--QTLREDIDYAERPALTKRGYVGVKVWI 211
>gi|406706346|ref|YP_006756699.1| 30S ribosomal protein S3 [alpha proteobacterium HIMB5]
gi|406652122|gb|AFS47522.1| SSU ribosomal protein S3P [alpha proteobacterium HIMB5]
Length = 226
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 6 SKKRKFVADGVFFAE---LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
+KK+ F G + E + E + + + G S V + T + + I +R V+G+K
Sbjct: 24 AKKKDF---GNYLIEDFKIREYIKKNVINSGVSKVMIERTSNKCYVTIYTSRPGFVIGKK 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G I ++ + + K N V L ++V A AE++ +L+ ++ RRA
Sbjct: 81 GSDIDKIKNNLAK---ITSNEVALNIKEVKKPETNAYLVAENIAQQLVKRISYRRAMKRA 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQR-AKSMKFKDGYMISSGQPVNEYIDSAVR 181
++ + GAKG KV +SG+L A++ +DG + S + ID A
Sbjct: 138 MQSCLRLGAKGI--------KVSISGRLGGNEIARTEWLRDGSIPS--HTLRADIDYAEA 187
Query: 182 HVLLRQGVLGIKVKI 196
L G++GIKV I
Sbjct: 188 EALTTYGIIGIKVWI 202
>gi|429331932|ref|ZP_19212672.1| 30S ribosomal protein S3 [Pseudomonas putida CSV86]
gi|428763443|gb|EKX85618.1| 30S ribosomal protein S3 [Pseudomonas putida CSV86]
Length = 228
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 11 FVADGVFFAE--LNEVLTRELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ ADG +A+ L ++ TRE +D V R+ P +T I I R V+G+KG
Sbjct: 22 WYADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ +L + K+ P V + E++ L + A+S+ +L + RRA +
Sbjct: 82 EDVEKLRQDLTKQMGVP---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAV 138
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ M GAKG K+ VSG+L A+ A++ +++G + P++ ID A
Sbjct: 139 QNAMRIGAKGI--------KIQVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYA 185
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQ---GPTTPLP 213
GV+G+KV I G+Q P P P
Sbjct: 186 TYEAHTTYGVIGVKVWIFKGEVIGGRQEELKPQAPAP 222
>gi|406944039|gb|EKD75900.1| 30S ribosomal protein S3 [uncultured bacterium]
Length = 250
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN-SVEL 86
+L + G S VE+R + I IR + ++G G + EL +++RF E + L
Sbjct: 46 KLRDGGVSRVEIRRANDQMTIHIRTAKPGVIIGRSGSGVEELKRQIKRRFFGSEKMHIHL 105
Query: 87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIV 146
E+V N + A + + ++L + RRA + +M+ GAKG K+IV
Sbjct: 106 EIEEVRNPDVDAELIMQGIVFQLEKRIPFRRAMKRSIEQVMQGGAKGV--------KIIV 157
Query: 147 SGKL 150
SG+L
Sbjct: 158 SGRL 161
>gi|149192563|ref|ZP_01870730.1| 30S ribosomal protein S3 [Vibrio shilonii AK1]
gi|148833604|gb|EDL50674.1| 30S ribosomal protein S3 [Vibrio shilonii AK1]
Length = 232
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 2 ATQISKKRKFVA--DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
AT + ++F DG F ++ + LT+ELA+ S + + + I R V+
Sbjct: 20 ATWFANTKEFADNLDGDF--KVRQFLTKELAKASLSRIVIERPAKSIRVTIHTARPGVVI 77
Query: 60 GEKGRRIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
G+KG + +L + V K P N E+ +++ + L A + A L +++ A++R
Sbjct: 78 GKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKR 136
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY- 175
A +R GAKG KV VSG+L A+ A+S +++G + P++
Sbjct: 137 AVQNAMRL----GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTLR 179
Query: 176 --IDSAVRHVLLRQGVLGIKVKIM 197
ID A + GV+GIKV I
Sbjct: 180 ADIDYATSSAHTQYGVIGIKVWIF 203
>gi|104779761|ref|YP_606259.1| 30S ribosomal protein S3 [Pseudomonas entomophila L48]
gi|123381068|sp|Q1IFW0.1|RS3_PSEE4 RecName: Full=30S ribosomal protein S3
gi|95108748|emb|CAK13442.1| 30S ribosomal subunit protein S3 [Pseudomonas entomophila L48]
Length = 228
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 11 FVADGVFFAE--LNEVLTRELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ ADG +A+ L ++ TRE +D V R+ P +T I I R V+G+KG
Sbjct: 22 WYADGATYADYLLKDLQTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ +L + K+ P V + E++ L A+ A+S+ +L + RRA +
Sbjct: 82 EDVEKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAV 138
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ M GAKG K+ VSG+L A+ A++ +++G + P++ ID
Sbjct: 139 QNAMRIGAKGI--------KIQVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYN 185
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQ---GPTTPLP 213
GV+G+KV I G+Q P P P
Sbjct: 186 TYEAHTTYGVIGVKVWIFKGEVIGGRQEELKPQAPAP 222
>gi|24981839|gb|AAN66090.1|AE016238_8 ribosomal protein S3 [Pseudomonas putida KT2440]
Length = 237
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 11 FVADGVFFAE--LNEVLTRELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ ADG +A+ L ++ TRE +D V R+ P +T I I R V+G+KG
Sbjct: 31 WYADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKG 90
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ +L + K+ P V + E++ L A+ A+S+ +L + RRA +
Sbjct: 91 EDVEKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAV 147
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ M GAKG K+ VSG+L A+ A++ +++G + P++ ID
Sbjct: 148 QNAMRIGAKGI--------KIQVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYN 194
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQ---GPTTPLP 213
GV+G+KV I G+Q P P P
Sbjct: 195 TYEAHTTYGVIGVKVWIFKGEVIGGRQEELKPQAPAP 231
>gi|156743942|ref|YP_001434071.1| 30S ribosomal protein S3 [Roseiflexus castenholzii DSM 13941]
gi|156235270|gb|ABU60053.1| ribosomal protein S3 [Roseiflexus castenholzii DSM 13941]
Length = 260
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 23/199 (11%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
L +++ +EL G + +++ + + E+ + + V+G++G ++ EL + +R
Sbjct: 38 LRKIIAKELENAGVARIDIERSANKVEVTVHTAKPGIVIGKRGAKVDELREELARRTG-- 95
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
V+L ++++ L A AES+ ++ ++ +RA ++ M GA+G
Sbjct: 96 -KKVKLNIQEIHQPELEAQLVAESIAEQINKRVSYKRAMKQAVQRAMRLGAQGV------ 148
Query: 141 SSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKI 196
K+ SG+L A+ A+ +DG + P++ ID A H G +G+KV I
Sbjct: 149 --KIKCSGRLAGAEMARIAWERDGRV-----PLHTLRADIDYAQVHAHTTYGRIGVKVWI 201
Query: 197 M---LEWDQKGKQGPTTPL 212
+ DQKG+ PT P+
Sbjct: 202 YKGDVFPDQKGQLQPTQPV 220
>gi|254556023|ref|YP_003062440.1| 30S ribosomal protein S3 [Lactobacillus plantarum JDM1]
gi|254044950|gb|ACT61743.1| 30S ribosomal protein S3 [Lactobacillus plantarum JDM1]
Length = 217
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ A+ F A LNE L + LA+ S VE+ R I I + V+G+ G
Sbjct: 21 KWYAEKDFAAYLNEDLRIRKYIEQRLADASVSTVEIERAANRVNISIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL ++ KR N +E + L A ES+ +L G +A RRA
Sbjct: 81 SEVEALRKELNNLTSKRVHI--NIIE-----IKKPDLDAKLVGESIARQLEGRVAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDG 163
G ++ M SGAKG K V+G+L A ++ + DG
Sbjct: 134 RGAMQRTMRSGAKGI--------KTQVAGRLNGADMSRVEAYSDG 170
>gi|148545745|ref|YP_001265847.1| 30S ribosomal protein S3 [Pseudomonas putida F1]
gi|161378146|ref|NP_742626.2| 30S ribosomal protein S3 [Pseudomonas putida KT2440]
gi|167031506|ref|YP_001666737.1| 30S ribosomal protein S3 [Pseudomonas putida GB-1]
gi|170723900|ref|YP_001751588.1| 30S ribosomal protein S3 [Pseudomonas putida W619]
gi|325272013|ref|ZP_08138457.1| 30S ribosomal protein S3 [Pseudomonas sp. TJI-51]
gi|339485393|ref|YP_004699921.1| 30S ribosomal protein S3 [Pseudomonas putida S16]
gi|386010119|ref|YP_005928396.1| protein RpsC [Pseudomonas putida BIRD-1]
gi|395446843|ref|YP_006387096.1| ribosomal protein S3 [Pseudomonas putida ND6]
gi|397696205|ref|YP_006534088.1| 30S ribosomal protein S3 [Pseudomonas putida DOT-T1E]
gi|398843898|ref|ZP_10601015.1| ribosomal protein S3, bacterial type [Pseudomonas sp. GM84]
gi|421524888|ref|ZP_15971509.1| 30S ribosomal protein S3 [Pseudomonas putida LS46]
gi|421528304|ref|ZP_15974871.1| 30S ribosomal protein S3 [Pseudomonas putida S11]
gi|431800513|ref|YP_007227416.1| 30S ribosomal protein S3 [Pseudomonas putida HB3267]
gi|34098362|sp|Q88QM9.2|RS3_PSEPK RecName: Full=30S ribosomal protein S3
gi|172048429|sp|A5VXQ3.1|RS3_PSEP1 RecName: Full=30S ribosomal protein S3
gi|148509803|gb|ABQ76663.1| SSU ribosomal protein S3P [Pseudomonas putida F1]
gi|166857994|gb|ABY96401.1| ribosomal protein S3 [Pseudomonas putida GB-1]
gi|169761903|gb|ACA75219.1| ribosomal protein S3 [Pseudomonas putida W619]
gi|313496825|gb|ADR58191.1| RpsC [Pseudomonas putida BIRD-1]
gi|324102844|gb|EGC00247.1| 30S ribosomal protein S3 [Pseudomonas sp. TJI-51]
gi|338836236|gb|AEJ11041.1| ribosomal protein S3 [Pseudomonas putida S16]
gi|388560840|gb|AFK69981.1| ribosomal protein S3 [Pseudomonas putida ND6]
gi|397332935|gb|AFO49294.1| 30S ribosomal protein S3 [Pseudomonas putida DOT-T1E]
gi|398255130|gb|EJN40170.1| ribosomal protein S3, bacterial type [Pseudomonas sp. GM84]
gi|402214261|gb|EJT85591.1| 30S ribosomal protein S3 [Pseudomonas putida S11]
gi|402751351|gb|EJX11864.1| 30S ribosomal protein S3 [Pseudomonas putida LS46]
gi|430791278|gb|AGA71473.1| 30S ribosomal protein S3 [Pseudomonas putida HB3267]
Length = 228
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 11 FVADGVFFAE--LNEVLTRELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ ADG +A+ L ++ TRE +D V R+ P +T I I R V+G+KG
Sbjct: 22 WYADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ +L + K+ P V + E++ L A+ A+S+ +L + RRA +
Sbjct: 82 EDVEKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAV 138
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ M GAKG K+ VSG+L A+ A++ +++G + P++ ID
Sbjct: 139 QNAMRIGAKGI--------KIQVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYN 185
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQ---GPTTPLP 213
GV+G+KV I G+Q P P P
Sbjct: 186 TYEAHTTYGVIGVKVWIFKGEVIGGRQEELKPQAPAP 222
>gi|224373643|ref|YP_002608015.1| 30S ribosomal protein S3 [Nautilia profundicola AmH]
gi|254764538|sp|B9L6M7.1|RS3_NAUPA RecName: Full=30S ribosomal protein S3
gi|223589411|gb|ACM93147.1| ribosomal protein S3 [Nautilia profundicola AmH]
Length = 240
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
EL + L ++L G S + + T + I I A + ++G+ G I L + +QKR
Sbjct: 38 ELRKFLKKKLYYAGISDIIIERTAKKIRITIFAAKPGIIIGKGGSEIEALKAELQKRIGN 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
E + + E+ L A AE++ ++ +A RRA V++ ++SGAKG
Sbjct: 98 KELILNIKEERKPQ--LSAQLAAENVATQIERRVAFRRAMKKVIQSALKSGAKGI----- 150
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
KV V+G+L A+ A++ + +G + + ID L G++G+KV I
Sbjct: 151 ---KVQVAGRLNGAEMARTEWYLEGRV--PLHTLRAKIDYGFAEALTTYGIIGVKVWIF 204
>gi|229815769|ref|ZP_04446094.1| hypothetical protein COLINT_02818 [Collinsella intestinalis DSM
13280]
gi|229808685|gb|EEP44462.1| hypothetical protein COLINT_02818 [Collinsella intestinalis DSM
13280]
Length = 236
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ L + LA S VE+ + ++II R V+G+KG I L + ++K
Sbjct: 37 EIRRFLEKRLARAAVSRVEIERAGDKVKVIILTARPGVVIGKKGSEIDGLRTELEKVAGV 96
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ ++ + +V L A+ A+S+ +L G +A RRA ++ ++GAKG
Sbjct: 97 SKGNLSVDVIEVKRPELDAVLVAQSIAEQLEGRVAFRRAMRKAVQSARKAGAKGI----- 151
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
++ SG+L A+ + +++G + + ID G G+KV
Sbjct: 152 ---RIQCSGRLGGAEMGRREWYREGRVPL--HTLRAKIDYGTATARTTMGSCGVKV---- 202
Query: 199 EWDQKGKQGPTTPLPDL 215
W +G++ P P+P++
Sbjct: 203 -WIYQGEKLPGQPVPNM 218
>gi|153210013|ref|ZP_01947564.1| ribosomal protein S3 [Coxiella burnetii 'MSU Goat Q177']
gi|154706269|ref|YP_001425176.1| 30S ribosomal protein S3 [Coxiella burnetii Dugway 5J108-111]
gi|161830479|ref|YP_001596191.1| 30S ribosomal protein S3 [Coxiella burnetii RSA 331]
gi|165924132|ref|ZP_02219964.1| ribosomal protein S3 [Coxiella burnetii Q321]
gi|212213244|ref|YP_002304180.1| 30S ribosomal protein S3 [Coxiella burnetii CbuG_Q212]
gi|212218080|ref|YP_002304867.1| 30S ribosomal protein S3 [Coxiella burnetii CbuK_Q154]
gi|189044972|sp|A9KD25.1|RS3_COXBN RecName: Full=30S ribosomal protein S3
gi|189044973|sp|A9NAN0.1|RS3_COXBR RecName: Full=30S ribosomal protein S3
gi|226697691|sp|B6J5D8.1|RS3_COXB1 RecName: Full=30S ribosomal protein S3
gi|226697692|sp|B6J257.1|RS3_COXB2 RecName: Full=30S ribosomal protein S3
gi|120575196|gb|EAX31820.1| ribosomal protein S3 [Coxiella burnetii 'MSU Goat Q177']
gi|154355555|gb|ABS77017.1| SSU ribosomal protein S3P [Coxiella burnetii Dugway 5J108-111]
gi|161762346|gb|ABX77988.1| ribosomal protein S3 [Coxiella burnetii RSA 331]
gi|165916414|gb|EDR35018.1| ribosomal protein S3 [Coxiella burnetii Q321]
gi|212011654|gb|ACJ19035.1| SSU ribosomal protein S3P [Coxiella burnetii CbuG_Q212]
gi|212012342|gb|ACJ19722.1| SSU ribosomal protein S3P [Coxiella burnetii CbuK_Q154]
Length = 227
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 32/226 (14%)
Query: 11 FVADGVFFAE-LNEVLT-RELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ AD FA+ LNE L R+L + G V R+ P R +III + R ++G+KG
Sbjct: 22 WYADKKDFADRLNEDLNVRQLLQKRLKGAAVSRIQIERPARNAKIIIHSARPGVIIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I L + K K P V + E+V L A AE++ +L + RRA +
Sbjct: 82 GEIEALRDEISKVMKVP---VHITIEEVRKPELDAKLVAENIAQQLERRVMFRRAMKRAV 138
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ + GA G K+ VSG+L A+ A++ +++G + P++ + ID A
Sbjct: 139 QNTLRQGALGV--------KISVSGRLGGAEIARTEWYREGRV-----PLHTFRADIDYA 185
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
G++G+KV W KG+ P + +EEV
Sbjct: 186 TASAKTTYGIIGVKV-----WIFKGEVHAPKPQAEEAAPQETEEEV 226
>gi|118602219|ref|YP_903434.1| 30S ribosomal protein S3 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|152060901|sp|A1AVK6.1|RS3_RUTMC RecName: Full=30S ribosomal protein S3
gi|118567158|gb|ABL01963.1| SSU ribosomal protein S3P [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 232
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ + L +L S +++ +I I R ++G+KG I +L S+V K
Sbjct: 38 KVRDYLFDKLTNASVSRIQIERLANNAKITIHTARPGIIIGKKGADIEQLKSIVSKMMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V + E++ L A AE++ +L + RRA VL GAKG
Sbjct: 98 P---VHINIEEIKKPELDARLVAENIAQQLEKRVMYRRAVKRVLGNTTRLGAKGI----- 149
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
KV+V+G+L A+ A+S +++G + P++ + +D + + GV+GIKV
Sbjct: 150 ---KVMVNGRLNGAEIARSEWYREGRV-----PLHTFRADVDYSSYGANTQYGVIGIKVW 201
Query: 196 IM 197
I
Sbjct: 202 IF 203
>gi|255536148|ref|YP_003096519.1| 30S ribosomal protein S3 [Flavobacteriaceae bacterium 3519-10]
gi|255342344|gb|ACU08457.1| SSU ribosomal protein S3p (S3e) [Flavobacteriaceae bacterium
3519-10]
Length = 251
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84
L L++ G S + + T + I R ++G+ G+ + +L ++K + +
Sbjct: 42 LEARLSKGGISRIYIERTLKLVTVTITTARPGLIIGKGGQEVDKLKEELKK---ITDKDI 98
Query: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKV 144
++ ++ L A+ A+S+ ++ ++ RRA ++ M GA+G KV
Sbjct: 99 QINIFEIKRPELDAVLVADSIAKQIENRISYRRAVKMSIQSTMRMGAEGI--------KV 150
Query: 145 IVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKIM 197
+SG+L A+ A+S FKDG + P++ + ID + L + G LG+KV IM
Sbjct: 151 QISGRLNGAEMARSESFKDGRI-----PLSTFRADIDYHIGEALTQYGKLGVKVWIM 202
>gi|254468886|ref|ZP_05082292.1| ribosomal protein S3 [beta proteobacterium KB13]
gi|207087696|gb|EDZ64979.1| ribosomal protein S3 [beta proteobacterium KB13]
Length = 282
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 23 EVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82
E L ++LA S + + ++ I R V+G+KG I L S +Q P
Sbjct: 41 EFLNKKLANAAVSKIIIERPAKNAKVTIMTARPGIVIGKKGEDIENLRSDLQGLMGIP-- 98
Query: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSS 142
V+L E+V + A A+S+ +L + RRA ++ M GA+G
Sbjct: 99 -VQLNIEEVRKPEIDATLIAQSIAQQLEKRVQFRRAMKRAMQNAMRLGAQGI-------- 149
Query: 143 KVIVSGKLRA-QRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKI 196
K++ SG+L + A+S +++G + P++ ID V + G++GIKV I
Sbjct: 150 KIMSSGRLNGIEIARSEWYREGRV-----PLHTLRADIDYGVARAQTQYGIIGIKVWI 202
>gi|313893202|ref|ZP_07826779.1| ribosomal protein S3 [Veillonella sp. oral taxon 158 str. F0412]
gi|313442555|gb|EFR60970.1| ribosomal protein S3 [Veillonella sp. oral taxon 158 str. F0412]
Length = 221
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F A L+E L L G S +E+ T R ++ I + V+G G
Sbjct: 21 KWYADKDFAANLHEDVKIRNFLKETLFIAGISRIEIERTNKRIKLTIHTAKPGMVIGRGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I ++ + + F + V++ ++ + A AE++ +L + RRA +
Sbjct: 81 AGIEDIKKAMTR---FTDKQVDVNIAEIKQADMDATLVAENIAGQLERRIGFRRAMKQAV 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
M GAKG K++VSG+L A+ A+S +++G + P++ ID
Sbjct: 138 GRTMRLGAKGI--------KIMVSGRLGGAEIARSESYREGSI-----PLHTLRADIDYG 184
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
G +GIKV W KG+ P P
Sbjct: 185 TAEAHTTYGCIGIKV-----WIYKGEVLPEAKQP 213
>gi|402836649|ref|ZP_10885183.1| ribosomal protein S3 [Mogibacterium sp. CM50]
gi|402270568|gb|EJU19828.1| ribosomal protein S3 [Mogibacterium sp. CM50]
Length = 287
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 28/199 (14%)
Query: 10 KFVADGVFFAEL----NEV---LTRELAEDGYSGVEV-RVTPVRTEIIIRATRTQNVLGE 61
K+ AD FA+ N+V + ++L G + V + R + +III R V+G
Sbjct: 21 KWYADKTNFADFLVEDNKVRNYVKKKLYAAGVASVVIERPAADKVKIIIATARPGMVIGR 80
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
G I EL + K +VE+ E+V L A AES+ L ++ RRA
Sbjct: 81 AGDGIDELKKSL---IKLTGKTVEISIEEVRRSELDAQLTAESIAQALERRVSFRRAMKS 137
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---ID 177
++ +++GAKG KV+VSG+L A+ A+S K+ +G + P++ ID
Sbjct: 138 AIQRTVKAGAKGI--------KVLVSGRLGGAEIARSEKYSEGNV-----PLHTLRADID 184
Query: 178 SAVRHVLLRQGVLGIKVKI 196
G +G+KV I
Sbjct: 185 YGFAEADTTYGKIGVKVWI 203
>gi|15805346|ref|NP_294040.1| 30S ribosomal protein S3 [Deinococcus radiodurans R1]
gi|27734542|sp|Q9RXJ6.1|RS3_DEIRA RecName: Full=30S ribosomal protein S3
gi|6457991|gb|AAF09898.1|AE001892_9 ribosomal protein S3 [Deinococcus radiodurans R1]
Length = 249
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ +++ ++LA G + +E+ + +II A + V+G+ G I+EL +++
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERLVS- 96
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+V + ++ N + A A + ++ A RRA + +MESGA+G
Sbjct: 97 -AGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGV----- 150
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKV 194
KVI+SG+L A++A++ K +G + P++ ID G+LGIKV
Sbjct: 151 ---KVILSGRLGGAEQARTEKVLEGRV-----PLHTLRADIDYGTALARTTYGILGIKV 201
>gi|289209323|ref|YP_003461389.1| 30S ribosomal protein S3 [Thioalkalivibrio sp. K90mix]
gi|288944954|gb|ADC72653.1| ribosomal protein S3 [Thioalkalivibrio sp. K90mix]
Length = 226
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 24/198 (12%)
Query: 11 FVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
+ ADG F E L E L ++LA S + + I I+ R V+G+KG
Sbjct: 22 WYADGREFGETLNNDIKLREFLQKKLAHASVSRISISRPAKAAHITIQTARPGIVIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I +L V + + +V++ E+V + A AE + +L + RRA +
Sbjct: 82 EDIEKLRQDVARETGLEKGTVKINIEEVRKPEIEAQLVAEGIAQQLERRIMFRRAMKRAV 141
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
M GA+G KV VSG+L A+ A+S +++G + P++ ID
Sbjct: 142 GNAMRLGAQGI--------KVHVSGRLNGAEIARSEWYREGRV-----PLHTLRADIDYG 188
Query: 180 VRHVLLRQGVLGIKVKIM 197
G++G+KV I
Sbjct: 189 FAEARTTYGIIGVKVWIF 206
>gi|300767827|ref|ZP_07077737.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180017|ref|YP_003924145.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031973|ref|YP_004888964.1| 30S ribosomal protein S3 [Lactobacillus plantarum WCFS1]
gi|392948145|ref|ZP_10313760.1| SSU ribosomal protein S3p (S3e) [Lactobacillus pentosus KCA1]
gi|418274605|ref|ZP_12890103.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820604|ref|YP_007413766.1| 30S ribosomal protein S3 [Lactobacillus plantarum ZJ316]
gi|38258338|sp|Q88XY0.1|RS3_LACPL RecName: Full=30S ribosomal protein S3
gi|300494812|gb|EFK29970.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308045508|gb|ADN98051.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|334882662|emb|CCB83707.1| 30S ribosomal protein S3 [Lactobacillus pentosus MP-10]
gi|339637291|emb|CCC16190.1| 30S ribosomal protein S3 [Lactobacillus pentosus IG1]
gi|342241216|emb|CCC78450.1| 30S ribosomal protein S3 [Lactobacillus plantarum WCFS1]
gi|376010171|gb|EHS83497.1| 30S ribosomal protein S3 [Lactobacillus plantarum subsp. plantarum
NC8]
gi|392436590|gb|EIW14499.1| SSU ribosomal protein S3p (S3e) [Lactobacillus pentosus KCA1]
gi|448274101|gb|AGE38620.1| 30S ribosomal protein S3 [Lactobacillus plantarum ZJ316]
Length = 217
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ A+ F A LNE L + LA+ S VE+ R I I + V+G+ G
Sbjct: 21 KWYAEKDFAAYLNEDLRIRKYIEQRLADASVSTVEIERAANRVNISIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL ++ KR N +E + L A ES+ +L G +A RRA
Sbjct: 81 SEVEALRKELNNLTGKRVHI--NIIE-----IKKPDLDAKLVGESIARQLEGRVAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDG 163
G ++ M SGAKG K V+G+L A ++ + DG
Sbjct: 134 RGAMQRTMRSGAKGI--------KTQVAGRLNGADMSRVEAYSDG 170
>gi|429727115|ref|ZP_19261894.1| ribosomal protein S3 [Prevotella sp. oral taxon 473 str. F0040]
gi|429144819|gb|EKX87926.1| ribosomal protein S3 [Prevotella sp. oral taxon 473 str. F0040]
Length = 262
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 42 TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 101
TP I + +R ++G+ G+ + +L +QK V++ +V L A
Sbjct: 77 TPKLVTITVCTSRPGMIIGQGGKDVEQLKLQLQK---ITNKDVQINIFEVKKPDLDANIV 133
Query: 102 AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKF 160
A+S+ ++ G +A RRA + M GA+G K+ +SG+L A+ A+S +
Sbjct: 134 AKSIARQIEGKIAYRRAIKKAIENTMRGGAEGI--------KIQISGRLNGAEIARSEMY 185
Query: 161 KDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKI 196
K+G P++ + ID L + G+LGIKV I
Sbjct: 186 KEGRT-----PLHTFRADIDYCQTEALTKVGILGIKVWI 219
>gi|342214879|ref|ZP_08707550.1| ribosomal protein S3 [Veillonella sp. oral taxon 780 str. F0422]
gi|341590410|gb|EGS33653.1| ribosomal protein S3 [Veillonella sp. oral taxon 780 str. F0422]
Length = 221
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F + L+E L + L G S +E+ T R ++ I + V+G+ G
Sbjct: 21 KWYADKDFASNLHEDVKIRTFLKKTLFIAGISRIEIERTNKRIKVTIHTAKPGMVIGKGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ I ++ ++ +F + +++ ++ + A AES+ +L ++ RRA +
Sbjct: 81 QGIEDIRKELK---RFTDKQIDVNIAEIKQVDMEAQLVAESIASQLERRVSFRRAMKQAV 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
M GA G KV+VSG+L A+ A+S +++G + N ID A
Sbjct: 138 GRTMRLGANGI--------KVMVSGRLGGAEIARSESYREGSIPLHTLRAN--IDYATAE 187
Query: 183 VLLRQGVLGIKVKI 196
G +GIKV I
Sbjct: 188 AHTTYGCIGIKVWI 201
>gi|303230141|ref|ZP_07316910.1| ribosomal protein S3 [Veillonella atypica ACS-134-V-Col7a]
gi|303231249|ref|ZP_07317987.1| ribosomal protein S3 [Veillonella atypica ACS-049-V-Sch6]
gi|401680975|ref|ZP_10812884.1| ribosomal protein S3 [Veillonella sp. ACP1]
gi|429760920|ref|ZP_19293368.1| ribosomal protein S3 [Veillonella atypica KON]
gi|302514156|gb|EFL56160.1| ribosomal protein S3 [Veillonella atypica ACS-049-V-Sch6]
gi|302515202|gb|EFL57175.1| ribosomal protein S3 [Veillonella atypica ACS-134-V-Col7a]
gi|400218030|gb|EJO48916.1| ribosomal protein S3 [Veillonella sp. ACP1]
gi|429176108|gb|EKY17509.1| ribosomal protein S3 [Veillonella atypica KON]
Length = 221
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ A+ F A L+E L L G S +E+ T R ++ I + V+G G
Sbjct: 21 KWYAEKDFAANLHEDVKIRNFLKETLFIAGISRIEIERTNKRIKLTIHTAKPGMVIGRGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I ++ + + F + V++ ++ + A+ AE++ +L + RRA +
Sbjct: 81 AGIEDIKKAMTR---FTDKQVDVNIAEIKQADMDAVLVAENIAGQLERRIGFRRAMKQAV 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
M GAKG K++VSG+L A+ A+S +++G + N ID
Sbjct: 138 GRTMRLGAKGI--------KIMVSGRLGGAEIARSESYREGSIPLHTLRAN--IDYGTAE 187
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
G +GIKV W KG+ P P
Sbjct: 188 AHTTYGCIGIKV-----WIYKGEVLPEAKQP 213
>gi|367470164|ref|ZP_09469880.1| SSU ribosomal protein S3p (S3e) [Patulibacter sp. I11]
gi|365814742|gb|EHN09924.1| SSU ribosomal protein S3p (S3e) [Patulibacter sp. I11]
Length = 281
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 23/155 (14%)
Query: 17 FFAELNEVLTR---ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI----REL 69
F E ++ T +LA G S + +R E+ IR R V+G+ G + ++L
Sbjct: 31 FLDEDRQIRTHIQTKLAHAGLSDITIRKNKNEVEVSIRTARPGVVIGKSGVEVDALRKDL 90
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+ +K+ K N +E+ +++ + L A + AE L+ ++ A RRA L M S
Sbjct: 91 HRITKKQVKV--NILEVRRPELDAK-LVAQSVAEQLQNRV----AFRRAMKRALTSAMRS 143
Query: 130 GAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDG 163
GAKGC K+ V G+L A+ +++ ++DG
Sbjct: 144 GAKGC--------KIQVGGRLGGAEMSRTESYQDG 170
>gi|71083798|ref|YP_266518.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1062]
gi|91207827|sp|Q4FLM4.1|RS3_PELUB RecName: Full=30S ribosomal protein S3
gi|71062911|gb|AAZ21914.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1062]
Length = 226
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84
+ + + G S V + T + + I +R V+G+KG I ++ + + K F N V
Sbjct: 43 IKKNVVNSGVSKVMIERTSNKCFVTIYTSRPGFVIGKKGSDIDKIKNNLSK---FTNNEV 99
Query: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKV 144
L ++V A AE++ +L+ ++ RRA ++ + GAKG KV
Sbjct: 100 TLNIKEVKKPETNAYLVAENIAQQLVKRISYRRAMKRAMQSCLRLGAKGI--------KV 151
Query: 145 IVSGKLRAQR-AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+SG+L A++ ++G + S + ID A L G++GIK+ I
Sbjct: 152 SISGRLGGNEIARTEWLREGSIPS--HTLRADIDYAEAEALTTFGIIGIKIWI 202
>gi|260424860|ref|ZP_05779019.1| ribosomal protein S3 [Dialister invisus DSM 15470]
gi|260403417|gb|EEW96964.1| ribosomal protein S3 [Dialister invisus DSM 15470]
Length = 248
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 19 AELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
A++ + L + L G S + ++ R +I I + V+G G I ++ +
Sbjct: 27 AKIRQFLKKHLFVAGISKIGIKRVGTRIKIAIYTAKPGMVIGRGGTGIEDIKKALAA--- 83
Query: 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
+ V++ ++ ++ + AI E + +L + RRA + M GAKG
Sbjct: 84 VTDKEVDIDILEIKSKDMSAILVGEDIASQLERRIGFRRAVKQAVGRTMRMGAKGI---- 139
Query: 139 LVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 197
KV VSG+L A+ A+S +++G + Q + ID AV G +GIKV
Sbjct: 140 ----KVTVSGRLGGAEIARSESYREGSI--PLQTLRANIDYAVATAHTTYGAIGIKV--- 190
Query: 198 LEWDQKGKQGPTTPLPDLVTIHPLKE 223
W KG+ P + + I K+
Sbjct: 191 --WIYKGELAPGQTVDENENIRTSKD 214
>gi|335420829|ref|ZP_08551864.1| 30S ribosomal protein S3 [Salinisphaera shabanensis E1L3A]
gi|334894131|gb|EGM32338.1| 30S ribosomal protein S3 [Salinisphaera shabanensis E1L3A]
Length = 226
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + + +LA S +++ I I R V+G+KG I +L + V +R
Sbjct: 38 EIRDFIREKLAHASVSRIQIDRPARSARITIHTARPGIVIGKKGEDIDKLRAEVSERMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V L E++ L A+ A+++ +L + RRA + M GA G N
Sbjct: 98 P---VHLSVEEIRRPELDALLVAQNIAQQLERRIMFRRAMKRAVGNAMRLGAGGIRVN-- 152
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
V+G+L A+ A++ ++DG + + ID + GVLG+KV
Sbjct: 153 ------VAGRLNGAEIARTEWYRDGRV--PLHTLRADIDYGLAEAKTTYGVLGVKV---- 200
Query: 199 EWDQKGKQGPTTP 211
W KG+ T P
Sbjct: 201 -WIFKGEVFDTDP 212
>gi|15599453|ref|NP_252947.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO1]
gi|107103770|ref|ZP_01367688.1| hypothetical protein PaerPA_01004841 [Pseudomonas aeruginosa PACS2]
gi|116052292|ref|YP_788862.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa UCBPP-PA14]
gi|152987607|ref|YP_001346229.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PA7]
gi|218889415|ref|YP_002438279.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa LESB58]
gi|296387186|ref|ZP_06876685.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAb1]
gi|313111411|ref|ZP_07797216.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 39016]
gi|355652608|ref|ZP_09056868.1| 30S ribosomal protein S3 [Pseudomonas sp. 2_1_26]
gi|386056742|ref|YP_005973264.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa M18]
gi|386068404|ref|YP_005983708.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa NCGM2.S1]
gi|392982085|ref|YP_006480672.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa DK2]
gi|416860418|ref|ZP_11914257.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 138244]
gi|416877964|ref|ZP_11920095.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 152504]
gi|418587988|ref|ZP_13152006.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589188|ref|ZP_13153116.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa MPAO1/P2]
gi|419756646|ref|ZP_14282991.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PADK2_CF510]
gi|420137284|ref|ZP_14645274.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa CIG1]
gi|421151765|ref|ZP_15611367.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 14886]
gi|421157752|ref|ZP_15617097.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 25324]
gi|421165614|ref|ZP_15623936.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 700888]
gi|421172458|ref|ZP_15630228.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa CI27]
gi|421178591|ref|ZP_15636201.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa E2]
gi|421518807|ref|ZP_15965481.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO579]
gi|424938879|ref|ZP_18354642.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa NCMG1179]
gi|451982938|ref|ZP_21931236.1| SSU ribosomal protein S3p (S3e) [Pseudomonas aeruginosa 18A]
gi|452877877|ref|ZP_21955126.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa VRFPA01]
gi|27734535|sp|Q9HWE1.1|RS3_PSEAE RecName: Full=30S ribosomal protein S3
gi|122261441|sp|Q02T74.1|RS3_PSEAB RecName: Full=30S ribosomal protein S3
gi|171460872|sp|A6UZJ4.1|RS3_PSEA7 RecName: Full=30S ribosomal protein S3
gi|9950474|gb|AAG07645.1|AE004841_23 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO1]
gi|115587513|gb|ABJ13528.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa UCBPP-PA14]
gi|150962765|gb|ABR84790.1| ribosomal protein S3 [Pseudomonas aeruginosa PA7]
gi|218769638|emb|CAW25398.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa LESB58]
gi|310883718|gb|EFQ42312.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 39016]
gi|334837550|gb|EGM16307.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 138244]
gi|334838983|gb|EGM17683.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 152504]
gi|346055325|dbj|GAA15208.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa NCMG1179]
gi|347303048|gb|AEO73162.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa M18]
gi|348036963|dbj|BAK92323.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa NCGM2.S1]
gi|354823946|gb|EHF08209.1| 30S ribosomal protein S3 [Pseudomonas sp. 2_1_26]
gi|375041227|gb|EHS33937.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051950|gb|EHS44411.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa MPAO1/P2]
gi|384396401|gb|EIE42819.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PADK2_CF510]
gi|392317590|gb|AFM62970.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa DK2]
gi|403249930|gb|EJY63396.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa CIG1]
gi|404348289|gb|EJZ74638.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO579]
gi|404526637|gb|EKA36839.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 14886]
gi|404537724|gb|EKA47307.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa CI27]
gi|404541176|gb|EKA50544.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 700888]
gi|404548195|gb|EKA57159.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa E2]
gi|404550277|gb|EKA59038.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa ATCC 25324]
gi|451759407|emb|CCQ83759.1| SSU ribosomal protein S3p (S3e) [Pseudomonas aeruginosa 18A]
gi|452185433|gb|EME12451.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa VRFPA01]
gi|453042436|gb|EME90180.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PA21_ST175]
Length = 228
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 26/214 (12%)
Query: 9 RKFVADGVFFAELN--EVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
RK AD FA+L E L +L S +++ I I R V+G+KG +
Sbjct: 26 RKNYAD-YLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDV 84
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
+L + K+ P V + E++ L A+ A+S+ +L + RRA ++
Sbjct: 85 EKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNA 141
Query: 127 MESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRH 182
M GAKG K+ VSG+L A+ A++ +++G + P++ ID A
Sbjct: 142 MRIGAKGI--------KIQVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYATYE 188
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQ---GPTTPLP 213
GV+G+KV I G+Q P P P
Sbjct: 189 AHTTYGVIGVKVWIFKGEVIGGRQEELKPVAPAP 222
>gi|344337603|ref|ZP_08768537.1| ribosomal protein S3 [Thiocapsa marina 5811]
gi|343802556|gb|EGV20496.1| ribosomal protein S3 [Thiocapsa marina 5811]
Length = 225
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ L +ELA+ S +++ I I R V+G+KG I +L + V K
Sbjct: 38 EVRSFLRKELAKASVSRIQIDRPAKNAHITIHTARPGVVIGKKGEDIDKLRARVSKMMGI 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V + E++ L A AE + +L + RRA ++ M GA+G N
Sbjct: 98 P---VHISIEEIRKPELDAQLVAEGIAQQLERRIMFRRAMKRAIQNTMRLGAEGVRVN-- 152
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
V+G+L A+ A++ ++G + P++ ID GV+G+KV
Sbjct: 153 ------VAGRLNGAEIARTEWAREGRV-----PLHTLRADIDYGFAEARTTYGVIGVKVW 201
Query: 196 IMLEWDQKGKQGPTTPLP 213
I + + G Q P P P
Sbjct: 202 I-FKGEVFGDQIPEEPAP 218
>gi|91763166|ref|ZP_01265130.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1002]
gi|91717579|gb|EAS84230.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1002]
Length = 226
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 25 LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84
+ + + G S V + T + + I +R V+G+KG I ++ + + K F N V
Sbjct: 43 IKKNVVNSGVSKVMIERTSNKCFVTIYTSRPGFVIGKKGSDIDKIKNNLSK---FTNNEV 99
Query: 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKV 144
L ++V A AE++ +L+ ++ RRA ++ + GAKG KV
Sbjct: 100 TLNIKEVKKPETNAYLVAENIAQQLVKRISYRRAMKRAMQSCLRLGAKGI--------KV 151
Query: 145 IVSGKLRAQR-AKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+SG+L A++ ++G + S + ID A L G++GIK+ I
Sbjct: 152 SISGRLGGNEIARTEWLREGSIPS--HTLRADIDYAEAEALTTFGIIGIKIWI 202
>gi|406915550|gb|EKD54621.1| hypothetical protein ACD_60C00063G0026 [uncultured bacterium]
Length = 228
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L +LA+ G S +++ +I + R ++G+ G+ + L + K K
Sbjct: 38 KVREYLYEKLAQAGISRIQIDRPARNAKITVYTARPGVIIGKSGKEVETLRDEINKILKV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V + E+V L A AE++ +L + RRA V+ M GAKG
Sbjct: 98 P---VHVSIEEVRKPELDAKLVAEAVAQQLEKRVMFRRAMKRVVTTAMRLGAKGI----- 149
Query: 140 VSSKVIVSGKLRAQR-AKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K+ VSG+L A+S +++G + P++ ID + GV+G+KV
Sbjct: 150 ---KICVSGRLGGTEIARSEWYREGRV-----PLHTLRADIDYGLAEAFTTYGVIGVKVW 201
Query: 196 IM 197
I
Sbjct: 202 IF 203
>gi|210631088|ref|ZP_03296744.1| hypothetical protein COLSTE_00629 [Collinsella stercoris DSM 13279]
gi|210160176|gb|EEA91147.1| ribosomal protein S3 [Collinsella stercoris DSM 13279]
Length = 236
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 90/197 (45%), Gaps = 16/197 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ L + LA S VE+ + ++II R V+G+KG I L + +++
Sbjct: 37 EIRRFLEKRLARAAVSRVEIERAGDKVKVIILTARPGVVIGKKGSEIDGLRTELERVAGV 96
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ ++ + +V L A+ A+S+ +L G +A RRA ++ ++GAKG
Sbjct: 97 TKGNLSVDVIEVKRPELDAVLVAQSIAEQLEGRVAFRRAMRKAVQSARKAGAKGI----- 151
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
++ SG+L A+ + +++G + + ID G G+KV
Sbjct: 152 ---RIQCSGRLGGAEMGRREWYREGRVPL--HTLRAKIDYGTATAHTTMGSCGVKV---- 202
Query: 199 EWDQKGKQGPTTPLPDL 215
W +G++ P P+P++
Sbjct: 203 -WIYQGEKLPGQPVPNM 218
>gi|118595329|ref|ZP_01552676.1| 30S ribosomal protein S3 [Methylophilales bacterium HTCC2181]
gi|118441107|gb|EAV47734.1| 30S ribosomal protein S3 [Methylophilales bacterium HTCC2181]
Length = 292
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 27/198 (13%)
Query: 10 KFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ ++ FA L E L ++LA S + + +I I + R V+G+K
Sbjct: 21 KWYSNSKNFASLLQNDIKVREFLNKKLANAAVSRIVIERPAKNAKITIYSARPGIVIGKK 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G I L S +Q P V+L E++ + A A+S+ +L + RRA
Sbjct: 81 GEDIETLRSSLQSLMGIP---VQLNIEEIRKPEVDATLIAQSIAQQLEKRVMFRRAMKRA 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRA-QRAKSMKFKDGYMISSGQPVNEY---IDS 178
++ M GA+G K++ SG+L + A+S +++G + P++ ID
Sbjct: 138 MQNAMRLGAQGV--------KIMSSGRLNGIEIARSEWYREGRV-----PLHTLRADIDY 184
Query: 179 AVRHVLLRQGVLGIKVKI 196
V G++GIKV I
Sbjct: 185 GVARAQTTYGIIGIKVWI 202
>gi|291296985|ref|YP_003508383.1| 30S ribosomal protein S3 [Meiothermus ruber DSM 1279]
gi|290471944|gb|ADD29363.1| ribosomal protein S3 [Meiothermus ruber DSM 1279]
Length = 253
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
+ ++ +EL + G + +++ +++ A + V+G G I+ L +Q RF P
Sbjct: 39 IRALIEKELHQAGLARIDIERAADNVTVMVYAAKPGVVIGRGGETIKRLRETLQSRF--P 96
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
+V L ++V N L A A+ + ++ AVRR+ ++ + ESGA G
Sbjct: 97 GKTVALNVQEVGNPNLSAPLVAQRVAEQIERRFAVRRSIKQAVQRVRESGALGA------ 150
Query: 141 SSKVIVSGKL 150
K++VSG++
Sbjct: 151 --KIVVSGRI 158
>gi|226968560|ref|YP_002808513.1| small subunit ribosomal protein S3 [Micromonas pusilla CCMP1545]
gi|226348855|gb|ACO50758.1| small subunit ribosomal protein S3 [Micromonas pusilla CCMP1545]
Length = 227
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR---RIRELTSVVQKRF 77
+ + + + L++ S V + R EI R + ++G KG ++RE S
Sbjct: 39 IRDYVAKHLSDASISRVNISRQVDRIEIEFFTARPRALVGAKGEALVKVREALSA----- 93
Query: 78 KFPEN-SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEF 136
K P + SV LY K + A+ AE++ +L RR LR ++GA G
Sbjct: 94 KLPAHRSVALYVTKTVQPEVDAVCIAENIAMQLEKRAPFRRTIRQALRSAQQAGAVGI-- 151
Query: 137 NFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVK 195
KV ++G+L A+ A+S ++G + + ID A L G+LGIKV
Sbjct: 152 ------KVKIAGRLNGAEIARSEWSREGRV--PLHTIRADIDYATARALTVYGILGIKVW 203
Query: 196 IMLEWDQKGKQGPTTPLP 213
+ + ++ K P+ P
Sbjct: 204 VCKDDTERFKPQPSASAP 221
>gi|269104018|ref|ZP_06156715.1| SSU ribosomal protein S3p (S3e) [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163916|gb|EEZ42412.1| SSU ribosomal protein S3p (S3e) [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 232
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 14 DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73
DG F ++ + LT+ELA+ S + + + I R V+G+KG + +L + V
Sbjct: 34 DGDF--KVRQFLTKELAKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAV 91
Query: 74 QKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
K P N E+ +++ + L A + A L +++ A++RA +R GA
Sbjct: 92 AKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKRAVQNAMRL----GA 146
Query: 132 KGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQ 187
KG KV VSG+L A+ A++ +++G + P++ ID A +
Sbjct: 147 KGI--------KVEVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYATSSAHTQY 193
Query: 188 GVLGIKVKIM 197
GV+GIKV I
Sbjct: 194 GVIGIKVWIF 203
>gi|374386806|ref|ZP_09644303.1| 30S ribosomal protein S3 [Odoribacter laneus YIT 12061]
gi|373223367|gb|EHP45717.1| 30S ribosomal protein S3 [Odoribacter laneus YIT 12061]
Length = 242
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ + L LA+ G + + + T I I R ++G+ G+ + +L ++K
Sbjct: 37 KIRKYLNARLAKAGIAKIVIERTLKLITITINTARPGIIIGKGGQEVDKLKEELKK---I 93
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ V++ ++ L A+ ++ +L G +A RRA ++ M GA+G
Sbjct: 94 TDKEVQINIFEIKRPELDAVIVGNNIARQLEGRVAYRRAIKMAVQSTMRMGAEGI----- 148
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
KV++SG+L A+ A++ FK+G + P++ + ID A L G+LGIKV
Sbjct: 149 ---KVLISGRLNGAEMARAEIFKEGRI-----PLHTFRADIDYAQAEALTTYGLLGIKVW 200
Query: 196 I 196
I
Sbjct: 201 I 201
>gi|15605251|ref|NP_220037.1| 30S ribosomal protein S3 [Chlamydia trachomatis D/UW-3/CX]
gi|385243729|ref|YP_005811575.1| 30S ribosomal protein S3 [Chlamydia trachomatis D-EC]
gi|385244609|ref|YP_005812453.1| 30S ribosomal protein S3 [Chlamydia trachomatis D-LC]
gi|7388191|sp|O84527.1|RS3_CHLTR RecName: Full=30S ribosomal protein S3
gi|3328959|gb|AAC68123.1| S3 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
gi|297748652|gb|ADI51198.1| SSU ribosomal protein S3P [Chlamydia trachomatis D-EC]
gi|297749532|gb|ADI52210.1| SSU ribosomal protein S3P [Chlamydia trachomatis D-LC]
gi|440525446|emb|CCP50697.1| 30S ribosomal protein S3 [Chlamydia trachomatis K/SotonK1]
gi|440528123|emb|CCP53607.1| 30S ribosomal protein S3 [Chlamydia trachomatis D/SotonD5]
gi|440529013|emb|CCP54497.1| 30S ribosomal protein S3 [Chlamydia trachomatis D/SotonD6]
gi|440532587|emb|CCP58097.1| 30S ribosomal protein S3 [Chlamydia trachomatis G/SotonG1]
Length = 224
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
KF+ + V ++ E L ++ + G +G V+ + E+ I R V+G+KG + L
Sbjct: 31 KFLIEDV---KIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESL 87
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+ ++ K + V + +V L A A+ + ++ ++ RRA L+ +M++
Sbjct: 88 KAELK---KLTDKDVWVEIAEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDA 144
Query: 130 GAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLL 185
GA G KV VSG+L A+ A+S +K+G + P++ ID A
Sbjct: 145 GALGV--------KVQVSGRLAGAEIARSEWYKNGRV-----PLHTLRADIDYATASAET 191
Query: 186 RQGVLGIKVKIML 198
G++GIKV I L
Sbjct: 192 TYGIIGIKVWINL 204
>gi|312870506|ref|ZP_07730625.1| ribosomal protein S3 [Lactobacillus oris PB013-T2-3]
gi|417886842|ref|ZP_12530986.1| ribosomal protein S3 [Lactobacillus oris F0423]
gi|311093968|gb|EFQ52293.1| ribosomal protein S3 [Lactobacillus oris PB013-T2-3]
gi|341593233|gb|EGS36090.1| ribosomal protein S3 [Lactobacillus oris F0423]
Length = 221
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F LNE L + LA+ S VE+ R + I + V+G+ G
Sbjct: 21 KWYADKDFANYLNEDLRIRKYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL + KR N VE+ L A ES+ +L +A RRA
Sbjct: 81 SEVEALRKELNKLTGKRVHI--NIVEIKKPD-----LDAHLVGESIARQLEARIAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY--- 175
G ++ M +GAKG K V+G+L A ++ + DG + P++
Sbjct: 134 RGAMQRAMRAGAKGI--------KTQVAGRLNGADMSRVESYSDGTV-----PLHTLRAD 180
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPT 209
ID + GVLG+K W +G+ PT
Sbjct: 181 IDYSWDEANTTYGVLGVKT-----WIYRGEVLPT 209
>gi|410638210|ref|ZP_11348774.1| small subunit ribosomal protein S3 [Glaciecola lipolytica E3]
gi|410142130|dbj|GAC15979.1| small subunit ribosomal protein S3 [Glaciecola lipolytica E3]
Length = 233
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 25/192 (13%)
Query: 13 ADGVFF-AELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
AD +F ++ + LT+EL S + + + I R V+G+KG + +L
Sbjct: 30 ADNLFNDHQVRKYLTKELKNASLSKIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRK 89
Query: 72 VVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
V K P N E+ +++ + L A + + L +++ A++RA +R
Sbjct: 90 FVSKLAGVPAQINIAEVRKPELDGQ-LVADSISSQLERRVMFRRAMKRAVQNAMRL---- 144
Query: 130 GAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLL 185
GAKG KV VSG+L A+ A+S +++G + P++ + ID A L
Sbjct: 145 GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTFRADIDYATSEALT 191
Query: 186 RQGVLGIKVKIM 197
G++G+KV I
Sbjct: 192 TYGIIGVKVWIF 203
>gi|288942066|ref|YP_003444306.1| 30S ribosomal protein S3 [Allochromatium vinosum DSM 180]
gi|288897438|gb|ADC63274.1| ribosomal protein S3 [Allochromatium vinosum DSM 180]
Length = 225
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 10 KFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ A+ +A+L + L +ELA+ S +++ I I R V+G+K
Sbjct: 21 KWYANSKDYADLLNTDLQVRDFLRKELAKASVSRIQIDRPAKNAHITIHTARPGVVIGKK 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G I +L + V + P V + E++ L A AE + +L + RRA
Sbjct: 81 GEDIDKLRAKVSEMMGIP---VHIAIEEIRKPELDAQLVAEGIAQQLERRIMFRRAMKRS 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDS 178
++ M GA+G KV V+G+L A+ A+S ++G + P++ ID
Sbjct: 138 IQNTMRLGAEGI--------KVSVAGRLNGAEIARSEWAREGRV-----PLHTLRADIDY 184
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
GVLG+KV I + + G Q P P P
Sbjct: 185 GFAEAKTTYGVLGVKVWI-FKGEVFGDQLPEEPAP 218
>gi|406996300|gb|EKE14707.1| Ribosomal protein S3 [uncultured bacterium]
Length = 212
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 15/196 (7%)
Query: 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRR 65
S KR F + ++ +VL +LA + +++ R +II A + ++G G+
Sbjct: 25 SNKRAFKDSLISDLKIRKVLMNKLAFSSVTQIDIERAINRITLIIYAVKVGMIIGRGGKG 84
Query: 66 IRELTSVV----QKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
+ E+ V +K K E +++ E V L + A+ + KL+ R +
Sbjct: 85 LEEIKQFVLDNLKKGEKVKELKIDIKIEPVKKPFLNSYYVAQLVAEKLVKNFPHRSTVHN 144
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
+ +ME+GAKG K+ + G++ A+ ++ K+ G + +S + E +D A
Sbjct: 145 AMNKVMEAGAKGV--------KIQLGGRVGGAEISRREKYFLGSVPTS--TIREDVDLAR 194
Query: 181 RHVLLRQGVLGIKVKI 196
L R G +G+KV I
Sbjct: 195 YPALTRSGYVGVKVWI 210
>gi|257067054|ref|YP_003153310.1| 30S ribosomal protein S3 [Anaerococcus prevotii DSM 20548]
gi|256798934|gb|ACV29589.1| ribosomal protein S3 [Anaerococcus prevotii DSM 20548]
Length = 238
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 10 KFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ AD F++L +++ +E+ + G S +E+ +I + A + V+G+
Sbjct: 21 KWFADKKDFSDLLVEDYNIRKIVKKEVYDAGISDIEIERAVNNLKITVFAGKPGMVIGKG 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G + EL ++K P + + E++ + L A AE++ +L +A RRA
Sbjct: 81 GSGVEELKKKLEKVA--PGRRIIINVEEIKYQDLSAQLVAENIANQLENRVAFRRAMKQS 138
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
++ M +GAKG K +VSG+L A A+S + +G + Q + ID
Sbjct: 139 MQRTMRAGAKGI--------KTMVSGRLGGADMARSEGYSEGTIPL--QTLRANIDYGFA 188
Query: 182 HVLLRQGVLGIKVKI 196
G +G KV I
Sbjct: 189 EADTEYGKIGCKVWI 203
>gi|375091974|ref|ZP_09738261.1| ribosomal protein S3 [Helcococcus kunzii ATCC 51366]
gi|374562192|gb|EHR33524.1| ribosomal protein S3 [Helcococcus kunzii ATCC 51366]
Length = 240
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 10 KFVADGVFF----AELNEV---LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ AD F AE N++ + R + G S +++ T R ++ + + ++G+
Sbjct: 21 KWFADKKEFSKLLAEDNKIRNYVKRSQFQAGVSKIDIERTLNRIKVTVNTAKPGMIIGKG 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G + EL + ++K K V + E+V N + A QAE + L + RRA
Sbjct: 81 GAGVEELKNALEKMTK---KQVIVNVEEVKNTAVNAQLQAERIASDLERRITFRRAMKQA 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
++ M++GAKG K VSG+L A A++ + +G + Q + ID
Sbjct: 138 IQTTMKAGAKGM--------KTQVSGRLGGADMARTEGYSEGNIPL--QTLRADIDYGFA 187
Query: 182 HVLLRQGVLGIKVKI 196
G LG+KV I
Sbjct: 188 EADTTYGKLGVKVWI 202
>gi|345870980|ref|ZP_08822929.1| ribosomal protein S3 [Thiorhodococcus drewsii AZ1]
gi|343921134|gb|EGV31858.1| ribosomal protein S3 [Thiorhodococcus drewsii AZ1]
Length = 225
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 10 KFVADGVFFAEL-------NEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
K+ A+ +A+L + L +ELA+ S +++ I I R V+G+K
Sbjct: 21 KWYANSKDYADLLNTDLQVRDFLRKELAKASVSRIQINRPAKNAHITIHTARPGVVIGKK 80
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
G I +L + V P V + E++ L A AE + +L + RRA
Sbjct: 81 GEDIDKLRTKVSAMMGIP---VHISIEEIRKPELDAQLVAEGIAQQLERRIMFRRAMKRS 137
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDS 178
++ M GA+G + N V+G+L A+ A+S ++G + P++ ID
Sbjct: 138 IQNTMRLGAEGIKVN--------VAGRLNGAEIARSEWAREGRV-----PLHTLRADIDY 184
Query: 179 AVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLP 213
G+LG+KV I + + G+Q P P P
Sbjct: 185 GFAEAKTTYGILGVKVWI-FKGEVFGEQLPEEPAP 218
>gi|148544690|ref|YP_001272060.1| 30S ribosomal protein S3 [Lactobacillus reuteri DSM 20016]
gi|184154043|ref|YP_001842384.1| 30S ribosomal protein S3 [Lactobacillus reuteri JCM 1112]
gi|194466947|ref|ZP_03072934.1| ribosomal protein S3 [Lactobacillus reuteri 100-23]
gi|227363813|ref|ZP_03847920.1| 30S ribosomal protein S3 [Lactobacillus reuteri MM2-3]
gi|227543617|ref|ZP_03973666.1| 30S ribosomal protein S3 [Lactobacillus reuteri CF48-3A]
gi|325683024|ref|ZP_08162540.1| 30S ribosomal protein S3 [Lactobacillus reuteri MM4-1A]
gi|338202941|ref|YP_004649086.1| 30S ribosomal protein S3 [Lactobacillus reuteri SD2112]
gi|423334758|ref|ZP_17312536.1| 30S ribosomal protein S3 [Lactobacillus reuteri ATCC 53608]
gi|172048239|sp|A5VLJ9.1|RS3_LACRD RecName: Full=30S ribosomal protein S3
gi|148531724|gb|ABQ83723.1| SSU ribosomal protein S3P [Lactobacillus reuteri DSM 20016]
gi|183225387|dbj|BAG25904.1| 30S ribosomal protein S3 [Lactobacillus reuteri JCM 1112]
gi|194453983|gb|EDX42880.1| ribosomal protein S3 [Lactobacillus reuteri 100-23]
gi|227071170|gb|EEI09486.1| 30S ribosomal protein S3 [Lactobacillus reuteri MM2-3]
gi|227186457|gb|EEI66528.1| 30S ribosomal protein S3 [Lactobacillus reuteri CF48-3A]
gi|324977374|gb|EGC14325.1| 30S ribosomal protein S3 [Lactobacillus reuteri MM4-1A]
gi|336448181|gb|AEI56796.1| 30S ribosomal protein S3 [Lactobacillus reuteri SD2112]
gi|337728279|emb|CCC03374.1| 30S ribosomal protein S3 [Lactobacillus reuteri ATCC 53608]
Length = 221
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F LNE L + LA+ S VE+ R + I + V+G+ G
Sbjct: 21 KWYADKDFADYLNEDLRIRKYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL + KR N VE+ L A ES+ +L +A RRA
Sbjct: 81 SEVEALRKELNKLTGKRVHI--NIVEIKKPD-----LDAHLVGESIARQLEARIAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY--- 175
G ++ M +GAKG K V+G+L A ++ + DG + P++
Sbjct: 134 RGAMQRAMRAGAKGI--------KTQVAGRLNGADMSRIESYSDGTV-----PLHTLRAD 180
Query: 176 IDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPT 209
ID + GVLG+K W +G+ PT
Sbjct: 181 IDYSWDEANTTYGVLGVKT-----WIYRGEVLPT 209
>gi|406948557|gb|EKD79248.1| 30S ribosomal protein S3 [uncultured bacterium]
Length = 250
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Query: 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87
+L + G S VE+R + I IR ++ ++G G + EL ++++F F ++++
Sbjct: 46 KLRDGGVSRVEIRRANDQMNIHIRTSKPGVIIGRSGAGVEELKRQIKRQF-FGSEKMKIF 104
Query: 88 --AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVI 145
E+V N + A + + ++L + RRA + +M+ GAKG K+I
Sbjct: 105 IEIEEVRNPDIDAELIMQGIVFQLEKRIPFRRAMKRAIEQVMQGGAKGV--------KII 156
Query: 146 VSGKL 150
VSG+L
Sbjct: 157 VSGRL 161
>gi|237751230|ref|ZP_04581710.1| 30s ribosomal protein s3 [Helicobacter bilis ATCC 43879]
gi|229372596|gb|EEO22987.1| 30s ribosomal protein s3 [Helicobacter bilis ATCC 43879]
Length = 229
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RKF+ +++A ++E++ +A ++RVT V A + ++G+KG I +
Sbjct: 40 RKFLKKELYYASVSEIIIERMA------TKLRVTVV-------AAKPGLIIGKKGADIEK 86
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ ++K V + ++V A AES+ +L +A RRA V++ M+
Sbjct: 87 VKETLRK---LVNKDVAINIKEVKRAQANAQLAAESVAMQLERRVAFRRAMKKVMQQAMK 143
Query: 129 SGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG KV VSG+L A+ A++ + +G + + ID
Sbjct: 144 SGAKGI--------KVKVSGRLAGAEMARTEWYMEGRV--PLHTLRAKIDYGFAEAATTY 193
Query: 188 GVLGIKVKI 196
G++G+KV I
Sbjct: 194 GIIGVKVWI 202
>gi|406999950|gb|EKE17419.1| hypothetical protein ACD_10C00468G0018 [uncultured bacterium]
Length = 265
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L +LA V + + + + R V+G+KG I +L S +Q+
Sbjct: 38 KVREYLKHKLAHASVGRVLIERPAKNARVTVYSARPGVVIGKKGEDIEQLRSDLQRIMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V + E++ + A A+S+ +L + RRA ++ M GAKG
Sbjct: 98 P---VHVSIEEIRKPEIDAQLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAKGI----- 149
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
KV+ +G+L A+ A+S +++G + P++ ID A L G++GIKV
Sbjct: 150 ---KVMSAGRLNGAEIARSEWYREGRV-----PLHTLRADIDYATSEALTTYGIIGIKV- 200
Query: 196 IMLEWDQKGKQGPTTPLPDLV 216
W KG + P++V
Sbjct: 201 ----WVYKGDMLDRSEQPEVV 217
>gi|371776789|ref|ZP_09483111.1| 30S ribosomal protein S3 [Anaerophaga sp. HS1]
Length = 235
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 19 AELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78
+++ + L LA+ S + + T I + R ++G+ G+ + +L ++K
Sbjct: 36 SKIRKYLNARLAKASVSRIVIERTLKLVTITVHTARPGIIIGKGGQEVDKLKEELKK--- 92
Query: 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNF 138
+ V++ +V L AI A ++ +L G +A RRA + M GA+G
Sbjct: 93 ITDKEVQINIFEVKRPELDAIIVANNIARQLEGRIAYRRAVKMAIASAMRMGAEGI---- 148
Query: 139 LVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKV 194
K+ VSG+L A+ A+S +K+G P++ + ID A L + G++GIKV
Sbjct: 149 ----KIQVSGRLNGAEMARSEMYKEGRT-----PLHTFRADIDYAKAEALTKTGLIGIKV 199
Query: 195 KI 196
I
Sbjct: 200 WI 201
>gi|29653596|ref|NP_819288.1| 30S ribosomal protein S3 [Coxiella burnetii RSA 493]
gi|30581016|sp|O85388.2|RS3_COXBU RecName: Full=30S ribosomal protein S3
gi|29540858|gb|AAO89802.1| SSU ribosomal protein S3P [Coxiella burnetii RSA 493]
Length = 227
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 32/226 (14%)
Query: 11 FVADGVFFAE-LNEVLT-RELAEDGYSGVEV-RVT---PVRT-EIIIRATRTQNVLGEKG 63
+ AD FA+ LNE L R+L + G V R+ P R +III + R ++G+KG
Sbjct: 22 WYADKKDFADRLNEDLNVRQLLQKRLKGAAVSRIQIERPARNAKIIIHSARPGVIIGKKG 81
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I L + K K P V + E+V L A AE++ +L + RRA +
Sbjct: 82 GEIEALRDEIFKVMKVP---VHITIEEVRKPELDAKLVAENIAQQLERRVMFRRAMKRAV 138
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
+ + GA G K+ VSG+L A+ A++ +++G + P++ + ID A
Sbjct: 139 QNTLRQGALGV--------KISVSGRLGGAEIARTEWYREGRV-----PLHTFRADIDYA 185
Query: 180 VRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
G++G+KV W KG+ P + +EEV
Sbjct: 186 TASAKTTYGIIGVKV-----WIFKGEVHAPKPQAEEAAPQETEEEV 226
>gi|259502537|ref|ZP_05745439.1| 30S ribosomal protein S3 [Lactobacillus antri DSM 16041]
gi|259169489|gb|EEW53984.1| 30S ribosomal protein S3 [Lactobacillus antri DSM 16041]
Length = 221
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 10 KFVADGVFFAELNEVL------TRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F LNE L + LA+ S VE+ R + I + V+G+ G
Sbjct: 21 KWYADKDFANYLNEDLRIRKYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG 80
Query: 64 RRI----RELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
+ +EL + KR N VE+ L A ES+ +L +A RRA
Sbjct: 81 SEVEALRKELNKLTGKRVHI--NIVEIKKPD-----LDAHLVGESIARQLEARIAFRRAM 133
Query: 120 YGVLRFIMESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY--- 175
G ++ M +GAKG K V+G+L A ++ + DG + P++
Sbjct: 134 RGAMQRAMRAGAKGI--------KTQVAGRLNGADMSRVESYSDGTV-----PLHTLRAD 180
Query: 176 IDSAVRHVLLRQGVLGIKVKI 196
ID + GVLG+K I
Sbjct: 181 IDYSWDEANTTYGVLGVKTWI 201
>gi|406969023|gb|EKD93749.1| 30S ribosomal protein S3 [uncultured bacterium]
Length = 226
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 14/174 (8%)
Query: 25 LTRELAEDGY-SGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83
R+ ++GY + +E+ RT +II +R V+G +G I + +++ F+ + S
Sbjct: 42 FVRKHFKEGYIAKIEILRDANRTTLIIHTSRPGTVIGRQGEGIEKFQEILEGMFRQQKFS 101
Query: 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSK 143
+ + +++ N L A AES+ ++ ++ RRA ++ ME+GAKG K
Sbjct: 102 ISV--KEIKNPDLDAYIVAESITKQIARRVSYRRAVKTAIQRGMENGAKGI--------K 151
Query: 144 VIVSGKLRA-QRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
+ V G+L + A++ +G + N +D A GV+G+KV I
Sbjct: 152 IGVKGRLNGVEIARAETTSEGKIPLHTLRAN--VDYAYVPAQTTYGVIGVKVWI 203
>gi|148655331|ref|YP_001275536.1| 30S ribosomal protein S3 [Roseiflexus sp. RS-1]
gi|189045329|sp|A5USI3.1|RS3_ROSS1 RecName: Full=30S ribosomal protein S3
gi|148567441|gb|ABQ89586.1| SSU ribosomal protein S3P [Roseiflexus sp. RS-1]
Length = 262
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 25/207 (12%)
Query: 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80
L +++ +EL G + +E+ + + E+ + + V+G++G ++ EL + ++KR
Sbjct: 38 LRKIIAKELENAGVARIEIERSANKVEVTVYTAKPGIVIGKRGAKVDELRAELEKRTG-- 95
Query: 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLV 140
V+L ++++ L A AES+ ++ ++ +RA ++ M GA+G
Sbjct: 96 -KKVKLNIQEIHQPELEAQLVAESIAEQINKRVSYKRAMKQAVQRAMRLGAQGV------ 148
Query: 141 SSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVKI 196
K+ SG+L A+ A+ +DG + P++ ID A H G +G+KV I
Sbjct: 149 --KIKCSGRLAGAEMARVAWERDGRV-----PLHTLRADIDYAQVHAHTTYGRIGVKVWI 201
Query: 197 M---LEWDQKGKQGPTTPLPDLVTIHP 220
+ DQKG+ P P + P
Sbjct: 202 YKGEVFPDQKGQ--TQLPQPAVAAARP 226
>gi|336123179|ref|YP_004565227.1| 30S ribosomal protein S3P [Vibrio anguillarum 775]
gi|365539184|ref|ZP_09364359.1| 30S ribosomal protein S3 [Vibrio ordalii ATCC 33509]
gi|335340902|gb|AEH32185.1| SSU ribosomal protein S3P [Vibrio anguillarum 775]
Length = 232
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 2 ATQISKKRKFVA--DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
AT + + F DG F ++ + LT+EL++ S + + + I R V+
Sbjct: 20 ATWFANTKDFADNLDGDF--KVRQFLTKELSKASLSRIVIERPAKSIRVTIHTARPGVVI 77
Query: 60 GEKGRRIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
G+KG + +L + V K P N E+ +++ + L A + A L +++ A++R
Sbjct: 78 GKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKR 136
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY- 175
A +R GAKG KV VSG+L A+ A+S +++G + P++
Sbjct: 137 AVQNAMRL----GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTLR 179
Query: 176 --IDSAVRHVLLRQGVLGIKVKIM 197
ID A + GV+G+KV I
Sbjct: 180 ADIDYATSSAHTQYGVIGVKVWIF 203
>gi|330447031|ref|ZP_08310681.1| ribosomal protein S3 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491222|dbj|GAA05178.1| ribosomal protein S3 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 229
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 14 DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73
DG F ++ + LT+ELA+ S + + + I R V+G+KG + +L + V
Sbjct: 34 DGDF--KVRQFLTKELAKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAV 91
Query: 74 QKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
K P N E+ +++ + L A + A L +++ A++RA +R GA
Sbjct: 92 AKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKRAVQNAMRL----GA 146
Query: 132 KGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQ 187
KG KV VSG+L A+ A++ +++G + P++ ID A +
Sbjct: 147 KGI--------KVEVSGRLGGAEIARTEWYREGRV-----PLHTLRADIDYATSSAHTQY 193
Query: 188 GVLGIKVKIM 197
GV+G+KV I
Sbjct: 194 GVIGVKVWIF 203
>gi|346312031|ref|ZP_08854025.1| 30S ribosomal protein S3 [Collinsella tanakaei YIT 12063]
gi|345899125|gb|EGX68976.1| 30S ribosomal protein S3 [Collinsella tanakaei YIT 12063]
Length = 236
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + L + L+ S VE+ + ++II R V+G+KG I L + ++K
Sbjct: 37 EIRKFLNKRLSRAAVSRVEIERAGDKVKVIILTARPGIVIGKKGAEIDGLRTELEKVAGV 96
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
+ + + ++ L A A+S+ +L G +A RRA ++ M++GAKG
Sbjct: 97 AKGQLSVDVIEIKRPELDANLVAQSIAEQLEGRVAFRRAMRKAVQSAMKAGAKGI----- 151
Query: 140 VSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIML 198
++ SG+L A+ + +++G + + ID G G+KV I L
Sbjct: 152 ---RIQCSGRLGGAEMGRREWYREGRVPL--HTLRAKIDYGTSTAHTTMGSCGVKVWIYL 206
Query: 199 EWDQKGKQGPTTPLPD 214
G++ P P+P+
Sbjct: 207 -----GEKLPGQPVPN 217
>gi|330752354|emb|CBL87307.1| ribosomal protein S3 [uncultured Sphingobacteria bacterium]
Length = 247
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 15 GVFFAELNEV---LTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71
GV AE N++ L + G S + + R I + +R V+G+ G + +L
Sbjct: 29 GVKLAEDNKIRKYLNARMPRAGISKILIERMLKRIIITVHTSRPGIVIGKGGSEVDKLKE 88
Query: 72 VVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA 131
V+K + V++ +V L A+ +S+ ++ G + +RA + M GA
Sbjct: 89 EVKK---LTKKDVQINIFEVKRPELDAMLVGQSIAQQIEGRVNFKRAIKMAIASTMRMGA 145
Query: 132 KGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQ 187
+G K++VSG+L A+ A++ +FK+G + P++ + +D A+ L
Sbjct: 146 QGV--------KIMVSGRLNGAEMARTQQFKEGRI-----PLHTFRADVDYALTEALTVY 192
Query: 188 GVLGIKVKIMLE 199
G +G+KV I E
Sbjct: 193 GKIGVKVWIFKE 204
>gi|160872272|ref|ZP_02062404.1| ribosomal protein S3 [Rickettsiella grylli]
gi|159121071|gb|EDP46409.1| ribosomal protein S3 [Rickettsiella grylli]
Length = 263
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 26/205 (12%)
Query: 6 SKKRKFVADGVFFA-ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
+KK + AD +++ +++ + L + G S +++ +++I I + V+G+KG
Sbjct: 24 AKKSREYADNLYYDLSARKLIEKALLQAGVSSIQIERAARKSKITISVAKPGVVIGKKGE 83
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
I +L ++K + P V L +V L A AE++ +L + RRA ++
Sbjct: 84 YIDQLRDQLEKIMRVP---VRLSVLEVKKPELDAKLVAENIAQQLERRVMFRRAMKRAVQ 140
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSAV 180
+ GA G K+ V+G+L A+ A+S ++++G + P++ + ID A+
Sbjct: 141 TALRLGALGI--------KITVAGRLGGAEIARSERYQEGSV-----PLHTFRADIDYAL 187
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGK 205
G LG+KV W KG+
Sbjct: 188 AEAQTTYGKLGVKV-----WIYKGE 207
>gi|269798544|ref|YP_003312444.1| 30S ribosomal protein S3 [Veillonella parvula DSM 2008]
gi|282849870|ref|ZP_06259253.1| ribosomal protein S3 [Veillonella parvula ATCC 17745]
gi|294792800|ref|ZP_06757947.1| ribosomal protein S3 [Veillonella sp. 6_1_27]
gi|294794554|ref|ZP_06759690.1| ribosomal protein S3 [Veillonella sp. 3_1_44]
gi|417000155|ref|ZP_11940476.1| ribosomal protein S3 [Veillonella parvula ACS-068-V-Sch12]
gi|269095173|gb|ACZ25164.1| ribosomal protein S3 [Veillonella parvula DSM 2008]
gi|282580307|gb|EFB85707.1| ribosomal protein S3 [Veillonella parvula ATCC 17745]
gi|294454884|gb|EFG23257.1| ribosomal protein S3 [Veillonella sp. 3_1_44]
gi|294456699|gb|EFG25062.1| ribosomal protein S3 [Veillonella sp. 6_1_27]
gi|333976236|gb|EGL77106.1| ribosomal protein S3 [Veillonella parvula ACS-068-V-Sch12]
Length = 222
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 10 KFVADGVFFAELNE------VLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ AD F A L+E L L G S +E+ T R ++ I + V+G G
Sbjct: 21 KWYADKDFAANLHEDVKIRNFLKETLFIAGISRIEIERTNKRIKLTIHTAKPGMVIGRGG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
I ++ + + F + V++ ++ + A AE++ +L + RRA +
Sbjct: 81 AGIEDIKKAMTR---FTDKQVDVNIAEIKQADMDATLVAENIAGQLERRIGFRRAMKQAV 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY---IDSA 179
M GAKG K++VSG+L A+ A+S +++G + P++ ID
Sbjct: 138 GRTMRLGAKGI--------KIMVSGRLGGAEIARSESYREGSI-----PLHTLRADIDYG 184
Query: 180 VRHVLLRQGVLGIKVKI 196
G +GIKV I
Sbjct: 185 TAEAHTTYGCIGIKVWI 201
>gi|242309325|ref|ZP_04808480.1| 30S ribosomal protein S3 [Helicobacter pullorum MIT 98-5489]
gi|239523896|gb|EEQ63762.1| 30S ribosomal protein S3 [Helicobacter pullorum MIT 98-5489]
Length = 235
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RKF+ +++A ++++L A +VRVT V A R ++G+KG + +
Sbjct: 40 RKFLKKELYYAGVSDILIERTAR------KVRVTVV-------AARPGIIIGKKGADVEK 86
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
L ++K + L ++V A AES+ +L +A RRA V++ M+
Sbjct: 87 LKESLKK---IVNKDIFLNIKEVKKPQSNAQLSAESVATQLERRVAFRRAMKKVMQGAMK 143
Query: 129 SGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG KV VSG+L A+ A++ + +G + + ID L
Sbjct: 144 SGAKGI--------KVKVSGRLAGAEMARTEWYMEGRI--PLHTLRAKIDYGFAEALTTY 193
Query: 188 GVLGIKVKIM 197
G +G+KV I
Sbjct: 194 GNIGVKVWIF 203
>gi|377555752|ref|ZP_09785480.1| SSU ribosomal protein S3P [endosymbiont of Bathymodiolus sp.]
Length = 230
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 20/182 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
E+ + L +L S V++ +I I R V+G+KG I L S+V K
Sbjct: 38 EVRDFLFEKLKSASVSRVQIERLANNAKITIHTARPGIVIGKKGADIESLKSIVTKMMGM 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
S + E++ L + AE++ +L + RRA VL GA+G
Sbjct: 98 ---SAHINIEEIKKPELDSRLVAENIAQQLEKRVMYRRAVKRVLGNATRLGAQGI----- 149
Query: 140 VSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
KV+VSG+L A+ A+S +++G + P++ + ID A + GV+GIKV
Sbjct: 150 ---KVMVSGRLNGAEIARSEWYREGRV-----PLHTFRADIDYAHYGANTQYGVIGIKVW 201
Query: 196 IM 197
I
Sbjct: 202 IF 203
>gi|269837072|ref|YP_003319300.1| 30S ribosomal protein S3 [Sphaerobacter thermophilus DSM 20745]
gi|269786335|gb|ACZ38478.1| ribosomal protein S3 [Sphaerobacter thermophilus DSM 20745]
Length = 224
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 10 KFVADGVFFAELNEVLT------RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKG 63
K+ A+ + +L+E LT EL G S +E+ R E+ I ++ V+G++G
Sbjct: 21 KWYAERNYTEQLHEDLTIRRLINAELTRAGISRIEIERAANRIEVTIHTSKPGIVIGKQG 80
Query: 64 RRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
+ + +++++ V L E++ + L A AES+ ++ ++ RRA
Sbjct: 81 ANVERIRQLIEQQVG---KKVHLKIEEIKDPELDARLIAESIAEQISRRVSFRRAMKHAA 137
Query: 124 RFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
M GAKG K+ +SG+L A+ A+++ G + + ID AV H
Sbjct: 138 TQAMRKGAKGV--------KIRLSGRLGGAEMARTVTEMMGRV--PLHTIRADIDFAVVH 187
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPT----TPLPDL 215
G +G+KV W +G P LP+L
Sbjct: 188 AHTTYGRIGVKV-----WVYRGDVMPEARSGAELPEL 219
>gi|444921187|ref|ZP_21241025.1| 30S ribosomal protein S3 [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507923|gb|ELV08097.1| 30S ribosomal protein S3 [Wohlfahrtiimonas chitiniclastica SH04]
Length = 229
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 23 EVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82
E L +ELA S +++ ++ I R V+G+KG I +L + + K P
Sbjct: 41 EFLRKELAAAAVSKIQITRPSKSAQVTIFTARPGVVIGKKGEDIEKLRAKLTKIMGCP-- 98
Query: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSS 142
V + E++ L A AE + +L + RRA + M+ GA+G N
Sbjct: 99 -VHVAIEEIKKPELDAYLVAEGIAQQLERRVMFRRAMKRAVSNTMKLGAEGIRIN----- 152
Query: 143 KVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 196
VSG+L A+ A+ +++G + N ID L G+LGIKV I
Sbjct: 153 ---VSGRLNGAEIARMEWYREGRVPLHTLRAN--IDYGTAEALTTYGILGIKVWI 202
>gi|260772102|ref|ZP_05881019.1| SSU ribosomal protein S3p (S3e) [Vibrio metschnikovii CIP 69.14]
gi|260612969|gb|EEX38171.1| SSU ribosomal protein S3p (S3e) [Vibrio metschnikovii CIP 69.14]
Length = 232
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 2 ATQISKKRKFVA--DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
AT + + F DG F ++ + LT+ELA+ S + + + I R V+
Sbjct: 20 ATWFANTKDFADNLDGDF--KVRQYLTKELAKASLSRIVIERPAKSIRVTIHTARPGVVI 77
Query: 60 GEKGRRIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
G+KG + +L + V K P N E+ +++ + L A + A L +++ A++R
Sbjct: 78 GKKGEDVEKLRAAVAKIAGVPAQINISEVRKPELDGQ-LVADSIASQLERRVMFRRAMKR 136
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY- 175
A +R GAKG KV VSG+L A+ A+S +++G + P++
Sbjct: 137 AVQNAMRL----GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTLR 179
Query: 176 --IDSAVRHVLLRQGVLGIKVKIM 197
ID A GV+G+KV I
Sbjct: 180 ADIDYATSSAHTTYGVIGVKVWIF 203
>gi|148982468|ref|ZP_01816770.1| 30S ribosomal protein S3 [Vibrionales bacterium SWAT-3]
gi|417949247|ref|ZP_12592385.1| 30S ribosomal protein S3 [Vibrio splendidus ATCC 33789]
gi|145960459|gb|EDK25836.1| 30S ribosomal protein S3 [Vibrionales bacterium SWAT-3]
gi|342808641|gb|EGU43790.1| 30S ribosomal protein S3 [Vibrio splendidus ATCC 33789]
Length = 232
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 2 ATQISKKRKFVA--DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
AT + + F DG F ++ + LT+EL + S + + + I R V+
Sbjct: 20 ATWFANTKDFADNLDGDF--KVRQFLTKELQKASLSRIVIERPAKSIRVTIHTARPGVVI 77
Query: 60 GEKGRRIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
G+KG + +L + V K P N E+ +++ + L A + A L +++ A++R
Sbjct: 78 GKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKR 136
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY- 175
A +R GAKG KV VSG+L A+ A+S +++G + P++
Sbjct: 137 AVQNAMRL----GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTLR 179
Query: 176 --IDSAVRHVLLRQGVLGIKVKIM 197
ID A + GV+GIKV I
Sbjct: 180 ADIDYATSSAHTQYGVIGIKVWIF 203
>gi|260770919|ref|ZP_05879848.1| SSU ribosomal protein S3p (S3e) [Vibrio furnissii CIP 102972]
gi|375129793|ref|YP_004991891.1| 30S ribosomal protein S3 [Vibrio furnissii NCTC 11218]
gi|260614156|gb|EEX39346.1| SSU ribosomal protein S3p (S3e) [Vibrio furnissii CIP 102972]
gi|315178965|gb|ADT85879.1| 30S ribosomal protein S3 [Vibrio furnissii NCTC 11218]
Length = 233
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 2 ATQISKKRKFVA--DGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL 59
AT + + F DG F ++ + LT+EL++ S + + + I R V+
Sbjct: 20 ATWFANTKDFADNLDGDF--KVRQFLTKELSKASLSRIVIERPAKSIRVTIHTARPGVVI 77
Query: 60 GEKGRRIRELTSVVQKRFKFPE--NSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
G+KG + +L + V K P N E+ +++ + L A + A L +++ A++R
Sbjct: 78 GKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDGQ-LVADSIASQLERRVMFRRAMKR 136
Query: 118 ACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL-RAQRAKSMKFKDGYMISSGQPVNEY- 175
A +R GAKG KV VSG+L A+ A+S +++G + P++
Sbjct: 137 AVQNAMRL----GAKGI--------KVEVSGRLGGAEIARSEWYREGRV-----PLHTLR 179
Query: 176 --IDSAVRHVLLRQGVLGIKVKIM 197
ID A GV+G+KV I
Sbjct: 180 ADIDYATSSAHTTYGVIGVKVWIF 203
>gi|217077289|ref|YP_002335007.1| 30S ribosomal protein S3 [Thermosipho africanus TCF52B]
gi|419759864|ref|ZP_14286149.1| 30S ribosomal protein S3 [Thermosipho africanus H17ap60334]
gi|226697768|sp|B7IHV2.1|RS3_THEAB RecName: Full=30S ribosomal protein S3
gi|217037144|gb|ACJ75666.1| ribosomal protein S3 [Thermosipho africanus TCF52B]
gi|407514903|gb|EKF49689.1| 30S ribosomal protein S3 [Thermosipho africanus H17ap60334]
Length = 209
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 37/190 (19%)
Query: 20 ELNEVLTRELAEDGYSGVEV-RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF- 77
E+ +V+ + A+ G S + + R R II++ R ++G+KG I EL ++KRF
Sbjct: 37 EIRKVIKNKYAQAGISEIVIERPDSERVIAIIKSARPGIIIGKKGAEITELRQELEKRFN 96
Query: 78 ----------KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
K PE +L AE + +R I + S YK++ +++A + M
Sbjct: 97 RRFIVNVEEIKNPEVDAQLVAENIASR----IEKRAS--YKVV----MKKAIFNA----M 142
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLR-AQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLR 186
+ GAKG K++VSG+L A+ A++ + G + Q + ID +
Sbjct: 143 KKGAKGI--------KIMVSGRLAGAEIARTEWYLKGRL--PLQTIKSIIDYGTARAETK 192
Query: 187 QGVLGIKVKI 196
G +GIKV I
Sbjct: 193 YGTIGIKVWI 202
>gi|91774641|ref|YP_544397.1| 30S ribosomal protein S3 [Methylobacillus flagellatus KT]
gi|123078974|sp|Q1H4N1.1|RS3_METFK RecName: Full=30S ribosomal protein S3
gi|91708628|gb|ABE48556.1| SSU ribosomal protein S3P [Methylobacillus flagellatus KT]
Length = 236
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79
++ E L ++LA S + + +I I + R V+G+KG I L S +Q
Sbjct: 38 KVREFLKKKLAHAAVSKIVIERPAKNAKITIYSARPGIVIGKKGEDIESLRSGLQGLMGV 97
Query: 80 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFL 139
P V L E+V + A AES+ +L + RRA ++ M GA+G
Sbjct: 98 P---VHLNIEEVRKPEIDATLIAESIAQQLEKRVMFRRAMKRAMQNAMRLGAQGI----- 149
Query: 140 VSSKVIVSGKLRA-QRAKSMKFKDGYMISSGQPVNEY---IDSAVRHVLLRQGVLGIKVK 195
K++ SG+L + A++ +++G + P++ ID V G++GIKV
Sbjct: 150 ---KIMSSGRLNGIEIARTEWYREGRV-----PLHTLRADIDYGVAEAKTTYGIIGIKVW 201
Query: 196 IM 197
+
Sbjct: 202 VF 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,369,839,638
Number of Sequences: 23463169
Number of extensions: 129207010
Number of successful extensions: 296289
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 1732
Number of HSP's that attempted gapping in prelim test: 293279
Number of HSP's gapped (non-prelim): 2686
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)