BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026316
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/231 (86%), Positives = 214/231 (92%), Gaps = 9/231 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPA 230
RHVLLRQGVLG+KVKIML+WD KGKQGP TPLPD+V IH P +++VY+APA
Sbjct: 173 RHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPA 223
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/235 (85%), Positives = 212/235 (90%), Gaps = 9/235 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYID+AV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE-VYVAPATATS 234
RHVLLRQGVLGIKVKIML+WD GK GP TPLPD+V IH K++ VY APA A +
Sbjct: 173 RHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAA 227
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/224 (87%), Positives = 204/224 (91%), Gaps = 8/224 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRF+MESGAKGCE VIVSGKLRA RAKSMKFKDGYM+SSGQP EYIDSAV
Sbjct: 121 GVLRFVMESGAKGCE--------VIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 224
RHVLLRQGVLGIKVK+ML+WD KG GP TPLPD+V IH KEE
Sbjct: 173 RHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEE 216
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 362 bits (929), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESG+KGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGSKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 362 bits (928), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 194/234 (82%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FP SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I KEE+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEEIL--PTTPVS 224
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 361 bits (927), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 185/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E + P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE--IVPTTPIS 224
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 361 bits (926), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 195/234 (83%), Gaps = 10/234 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
EKGRRIRELT+VVQKRF FPE SVELYAE+V RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GVLRFIMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AV
Sbjct: 121 GVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAV 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
RHVLLRQGVLGIKVKIML WD GK GP PLPD V+I K+E+ P T S
Sbjct: 173 RHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEIL--PTTPIS 224
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 347 bits (890), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 176/232 (75%), Positives = 189/232 (81%), Gaps = 10/232 (4%)
Query: 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEK
Sbjct: 4 NNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEK 63
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
GRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 64 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 123
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
LRFIMESGA+GCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RH
Sbjct: 124 LRFIMESGARGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 175
Query: 183 VLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 234
VLLRQGVLGIKVKIML WDQ+GK GP P PD + + K+E AP TS
Sbjct: 176 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 335 bits (860), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/235 (72%), Positives = 189/235 (80%), Gaps = 9/235 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACYGVLR
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
+IMESGAKGCE V+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVL
Sbjct: 127 YIMESGAKGCE--------VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVL 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 238
LRQGVLGIKVK+ML +D K K GP PLPD V+ + P +E++Y P T I P
Sbjct: 179 LRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 320 bits (819), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 164/231 (70%), Positives = 188/231 (81%), Gaps = 12/231 (5%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISKKRKFVADGVF+AELNE TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGE
Sbjct: 4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 121
KGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YG
Sbjct: 64 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123
Query: 122 VLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVR 181
VLR++ME+GAKGCE V++SGKLRA RAKSMKF DG+MI SGQP ++IDSA R
Sbjct: 124 VLRYVMEAGAKGCE--------VVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATR 175
Query: 182 HVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 231
HVLLRQGVLG+KVKIML + K +Q + LPD+V + P +EE P T
Sbjct: 176 HVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKPYT 223
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 314 bits (805), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 159/221 (71%), Positives = 178/221 (80%), Gaps = 8/221 (3%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
FIMESGA+G E VIVSGKLR QRAK+MKF DG MI SG PVN+YI AVRHV
Sbjct: 127 FIMESGAQGVE--------VIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQ 178
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225
LRQGV+GIKVKIML +D +G+ GP LPD V I +EEV
Sbjct: 179 LRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV 219
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 305 bits (781), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/231 (66%), Positives = 186/231 (80%), Gaps = 11/231 (4%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 GVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAV 180
GV+R++MESGAKGCE V+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A
Sbjct: 121 GVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTAT 172
Query: 181 RHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 230
RHVL+RQGVLGIKVKIM + K + GP LPD VT I P +EE +AP+
Sbjct: 173 RHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 271 bits (694), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/218 (64%), Positives = 166/218 (76%), Gaps = 11/218 (5%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKKRKFVADGVF AELNE+ TRE +D GYSGVE++ +P TEIIIRA++TQ V+G
Sbjct: 6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPN 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122
RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY +
Sbjct: 66 ARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAI 125
Query: 123 LRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRH 182
+ IM GAKGCE VIVSGKLRAQRAKSMKF+DGYMI SGQP ++ID A RH
Sbjct: 126 VHQIMTRGAKGCE--------VIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRH 177
Query: 183 VLLRQGVLGIKVKIMLEWDQKGK-QGPTT-PLPDLVTI 218
VLLRQG LG+KV IML +D+ K G P PD+V I
Sbjct: 178 VLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 132/209 (63%), Gaps = 8/209 (3%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMES 129
+ +R + P+ SVE+ EKV+ +GLCA+ QA +R K+LGG+ RRA L+ +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHA 140
Query: 130 GAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGV 189
A+GC+ +IVSGKL+ QRAKS+KF+DG +I SG V +YI++ V +QGV
Sbjct: 141 KAQGCQ--------IIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGV 192
Query: 190 LGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
+GI+V+IML +D +G GP PLPD +TI
Sbjct: 193 IGIQVRIMLPYDPEGVLGPNYPLPDRITI 221
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G+KV IM P LPD
Sbjct: 174 GVIGVKVAIMP---------PDARLPD 191
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P +EEV
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIVEKPAEEEV 204
>sp|Q5JDH5|RS3_PYRKO 30S ribosomal protein S3 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps3 PE=3 SV=1
Length = 209
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++ I A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++K+F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + L+
Sbjct: 122 RNGARGVEIR--------LSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G+KV IM P LPD
Sbjct: 174 GVIGVKVSIM---------PPDAKLPD 191
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 20/233 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R++ KF GY+ +G+P E +DS V +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH-PLKEEVYVAPATATSIE 236
++ G +G++VKI+ P LPD I+ + E YVA S+E
Sbjct: 171 MKLGTIGVRVKIIP---------PNAELPDDFEIYEDVDVEDYVADTDGESVE 214
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV DG A ++E +L GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V R+ EN ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVAARYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV+E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVT 217
G LG KV+I+ P LPD T
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPDSYT 194
>sp|Q3IMY2|RS3_NATPD 30S ribosomal protein S3 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps3 PE=3 SV=1
Length = 305
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 119/215 (55%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E + EL+ GY G+EV TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++ F + V++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +I+SGK+ R++ KF GY+ +G+P +DS V +
Sbjct: 119 RIMESGALGAE--------IILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G++VKI+ P LPD ++
Sbjct: 171 MKLGTIGVQVKIIP---------PEAELPDDFEVY 196
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIR
Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K F + +++ + V N L A A+ + L GL RR + +R +M
Sbjct: 63 ELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GAKG VI+SGKL +RA++ KF GYM G+P E +D +
Sbjct: 121 NAGAKGV--------IVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVIGVTVKIMR---------PDVLLPDEIII 194
>sp|Q8U004|RS3_PYRFU 30S ribosomal protein S3 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps3 PE=1 SV=1
Length = 210
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++K+F +E+ E++ N L A QA L L G+ RRA Y LR IM
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 NNGARGVEIRL--------SGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEV 204
>sp|C6A165|RS3_THESM 30S ribosomal protein S3 OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=rps3 PE=3 SV=1
Length = 207
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +G+ ++E L +EL GY G++++ TP+ T+++I R V+G GR+IR
Sbjct: 4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT ++++RF +E+ E++ N A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 SNGARGVEIR--------ISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GVLG+KV IM P LPD + I P++EEV
Sbjct: 174 GVLGVKVSIM---------PPDARLPDEIEIVEKPIEEEV 204
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3 SV=1
Length = 318
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L+ GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V ++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPD 191
>sp|B6YSL9|RS3_THEON 30S ribosomal protein S3 OS=Thermococcus onnurineus (strain NA1)
GN=rps3 PE=3 SV=1
Length = 208
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 118/219 (53%), Gaps = 21/219 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 RNGARGVEIR--------ISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEE 224
GV+G+KV IM P LPD + + P++EE
Sbjct: 174 GVIGVKVSIM---------PPDAKLPDEIEVIEKPIQEE 203
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L GY G+E+ TP+ T+III + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V ++ EN ++ A++V L A A L + G R+A + +R +M
Sbjct: 64 KLTRDVATKYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE V++SGKL R++ KF DGY+ SG PV E +D + +
Sbjct: 122 NAGALGCE--------VVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIQ---------PGVVLPD 191
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFVADGV + + L +EL GY G+++ TPV T++ I A + V+G+ G+ +R
Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT+ + + VE+ ++V N L A AE L L G R+A V+R +M
Sbjct: 64 QLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE VI++GKL RA+ KF +GY+ SG+P ++ + +
Sbjct: 122 DSGALGCE--------VIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G++G++VKI+ P LPD
Sbjct: 174 GIIGVQVKIVP---------PGAKLPD 191
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KF+ DGV + + LT+EL GY G+++ TP+ T++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + VE+ ++V N A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
ESGA GCE VIV+GKL R+++ KF +GY+ G+P ++ + +
Sbjct: 122 ESGALGCE--------VIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230
G +G++VKI+ P LPD + L+ E APA
Sbjct: 174 GTIGVQVKIVP---------PDARLPDAFDV--LEPEPKKAPA 205
>sp|Q2FT39|RS3_METHJ 30S ribosomal protein S3 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps3 PE=3 SV=1
Length = 237
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 107/207 (51%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFVADGV + L EL GY G+++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
LT + + +E+ ++V+N L A AE L L G R+A LR IM
Sbjct: 64 TLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE V++SGKL R + KF +GY+ SG PVN +D + +
Sbjct: 122 DSGALGCE--------VVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
GV+G++V+++ P LPD
Sbjct: 174 GVIGVQVRLIP---------PGAQLPD 191
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V+VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM
Sbjct: 63 AITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ + KF DGY+ G+P +++ V L+
Sbjct: 121 AAGAQGVE--------VTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
GVLG+ V+IM P LPD V I
Sbjct: 173 GVLGVYVRIMP---------PDVVLPDKVEIE 195
>sp|A1RXG6|RS3_THEPD 30S ribosomal protein S3 OS=Thermofilum pendens (strain Hrk 5)
GN=rps3 PE=3 SV=2
Length = 202
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 10/189 (5%)
Query: 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRE 68
RK ++ G+ + LNE L R+L Y + TP+ T++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 69 LTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME 128
+ V+++ F +++ +V N+ L A A + L+ G+ RRA L IM
Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123
Query: 129 SGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 188
+GA+G E +++SGKL +QR ++ KF GY+ SG+P E +D A+ HVLL+ G
Sbjct: 124 AGARGAE--------IVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLG 175
Query: 189 VLGIKVKIM 197
+ G+KV+IM
Sbjct: 176 MYGVKVRIM 184
>sp|Q9V1U1|RS3_PYRAB 30S ribosomal protein S3 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps3 PE=3 SV=1
Length = 210
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E +SGKL +RAKS++F GY+ G P + LL+
Sbjct: 122 SNGARGVEIR--------ISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 225
GV+G+KV IM P LPD + I P++EEV
Sbjct: 174 GVIGVKVAIM---------PPDARLPDEIEIIEKPVEEEV 204
>sp|A4FWB6|RS3_METM5 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rps3 PE=3 SV=1
Length = 211
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + K + +E+ ++V N L + L G+ RR + +R +M
Sbjct: 63 ELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGVS--------IIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD +TI
Sbjct: 173 GVVGVTVKIM---------KPDVTLPDEITI 194
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E +L GY G+E+ TP+ T+I ++A + ++G+ G+ IR
Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
T + RFK +++ ++V L A A L L G R+A L+ IM
Sbjct: 64 RYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE VI++GKL R + KF GY+ G+PV E +D +
Sbjct: 122 DSGAMGCE--------VIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
G++G+KV+IM P LPD +TI
Sbjct: 174 GIIGVKVRIMP---------PEAVLPDQITIE 196
>sp|A5UL83|RS3_METS3 30S ribosomal protein S3 OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=rps3 PE=3 SV=1
Length = 250
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 19/215 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T+ ++ F +E+ ++V+ L A + L G+ RR Y +R IM
Sbjct: 63 AITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF +GY+ G+P ++ V L+
Sbjct: 121 GAGAQGVE--------VTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLK 222
GVLGI V+IM P T LPD V I P K
Sbjct: 173 GVLGIYVRIM---------PPETVLPDSVEILPPK 198
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ +
Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVH 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT + + + +E+ ++V N A AE L L G R+A ++R +M
Sbjct: 64 QLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE V+++GKL RA++ KF +GY+ G+P N ++ + +
Sbjct: 122 DSGALGCE--------VVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKL 173
Query: 188 GVLGIKVKIM 197
GV+G++VKI+
Sbjct: 174 GVIGVQVKIV 183
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E ++L+ GY G+++ TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT V + + ++ ++ A++V L A A L + G R+A + +R +M
Sbjct: 64 KLTRDVDRLYDL--DNPQIDAQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA GCE +++SGKL R++ K +GY+ +G+PV++ +D + +
Sbjct: 122 NAGALGCE--------IVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPD 214
G LG KV+I+ P LPD
Sbjct: 174 GTLGCKVRIIH---------PDAVLPD 191
>sp|Q2NFW2|RS3_METST 30S ribosomal protein S3 OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rps3 PE=3 SV=1
Length = 252
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +L GY G++++VTPV T +I+ A + V+G G+ +R
Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM
Sbjct: 63 AITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+GA+G E V +SGK+R R+ KF +GY+ G+P +Y+ V L+
Sbjct: 121 SAGAQGVE--------VTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKP 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GVLGI V+IM P LPD + I
Sbjct: 173 GVLGIYVRIM---------PPEVTLPDNIEI 194
>sp|Q18GF5|RS3_HALWD 30S ribosomal protein S3 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps3 PE=3 SV=1
Length = 323
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 22/225 (9%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + +
Sbjct: 61 NIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
I+ESGA G E +++SGK+ R++ KF GY+ +G+P E +D +
Sbjct: 119 RIIESGALGAE--------IVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229
++ G +G+ VKI+ P LPD IH ++V V P
Sbjct: 171 MKLGTIGVTVKIIP---------PGAELPDDFEIH---DDVDVEP 203
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + ++ N ++ +++ + L A A+ + L G+ RR + +R +M
Sbjct: 63 ELTETIATKYGV--NKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
GAKG VIVSGKL +R+++ K+ +GYM G+P E +D + L+
Sbjct: 121 AQGAKGV--------VVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD + I
Sbjct: 173 GVVGVTVKIM---------PPEITLPDEIVI 194
>sp|A0B9W4|RS3_METTP 30S ribosomal protein S3 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps3 PE=3 SV=1
Length = 276
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 112/212 (52%), Gaps = 19/212 (8%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E L +EL GY G+ + TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
+LT +++RF+ ++ ++ + V L A A L L G R+A +LR +M
Sbjct: 64 KLTRDLERRFRL--DNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVM 121
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
+SGA GCE +++SGKL R++ KF GY+ SG+P E +D+ + +
Sbjct: 122 DSGALGCE--------IVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKL 173
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
G +G +V+I+ P LPD I+
Sbjct: 174 GAIGCQVRIVP---------PGAVLPDDFQIN 196
>sp|P15009|RS3_HALSA 30S ribosomal protein S3 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps3 PE=3 SV=3
Length = 302
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 19/215 (8%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ G+ ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
IR++T+ +++RF + +++ ++V L A A+ L L G R+A + +
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 125 FIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVL 184
IMESGA G E +++SGK+ R + KF GY+ +G+P E +D +
Sbjct: 119 RIMESGALGAE--------IVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAV 170
Query: 185 LRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIH 219
++ G +G+ VKI+ P LPD I
Sbjct: 171 MKLGTIGVNVKIIP---------PNAELPDDFEIQ 196
>sp|A6VGZ0|RS3_METM7 30S ribosomal protein S3 OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rps3 PE=3 SV=1
Length = 211
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 19/211 (9%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIM 127
ELT + + N+ ++ ++V + L + L G+ R+ + +R +M
Sbjct: 63 ELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVM 120
Query: 128 ESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQ 187
SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + + L+
Sbjct: 121 GSGAKGV--------SIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKL 172
Query: 188 GVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 218
GV+G+ VKIM P LPD +TI
Sbjct: 173 GVVGVTVKIM---------KPDVSLPDEITI 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,232,148
Number of Sequences: 539616
Number of extensions: 3173213
Number of successful extensions: 8974
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 640
Number of HSP's that attempted gapping in prelim test: 8446
Number of HSP's gapped (non-prelim): 747
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)