Query 026316
Match_columns 240
No_of_seqs 137 out of 1141
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_B 40S ribosomal protein S 100.0 2.1E-77 7.3E-82 528.5 5.5 224 1-232 1-225 (227)
2 3u5c_D RP13, YS3, 40S ribosoma 100.0 2.3E-74 7.7E-79 512.3 18.9 215 1-226 1-216 (240)
3 2zkq_c 40S ribosomal protein S 100.0 6.4E-75 2.2E-79 516.9 10.8 217 1-225 1-217 (243)
4 2xzm_C KH domain containing pr 100.0 1.7E-71 5.9E-76 495.0 18.4 216 3-226 6-223 (243)
5 3j20_C 30S ribosomal protein S 100.0 2E-64 6.8E-69 441.6 15.3 204 5-230 1-207 (210)
6 3i1m_C 30S ribosomal protein S 100.0 2.4E-60 8.4E-65 421.2 12.1 200 6-229 17-225 (233)
7 2vqe_C 30S ribosomal protein S 100.0 1.4E-59 4.7E-64 417.8 15.0 194 6-213 17-220 (239)
8 3r8n_C 30S ribosomal protein S 100.0 6.4E-60 2.2E-64 412.1 11.0 180 6-199 16-204 (206)
9 3bbn_C Ribosomal protein S3; s 100.0 9.2E-59 3.1E-63 407.7 10.7 183 6-199 17-216 (218)
10 1wh9_A 40S ribosomal protein S 99.9 4.2E-23 1.4E-27 159.5 8.8 87 13-99 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 95.5 0.023 7.9E-07 47.1 5.9 109 18-126 4-123 (152)
12 3gku_A Probable RNA-binding pr 91.6 0.35 1.2E-05 42.3 6.5 113 18-135 63-192 (225)
13 3iev_A GTP-binding protein ERA 62.4 7.9 0.00027 33.8 4.5 42 44-88 238-286 (308)
14 1ega_A Protein (GTP-binding pr 60.2 21 0.00073 30.9 6.9 42 44-88 229-277 (301)
15 1zzk_A Heterogeneous nuclear r 59.3 4.9 0.00017 28.8 2.2 29 45-73 8-36 (82)
16 1dtj_A RNA-binding neurooncolo 59.1 3.4 0.00012 28.9 1.3 28 46-73 5-32 (76)
17 2opv_A KHSRP protein; KH domai 58.4 2.7 9.4E-05 30.3 0.7 30 45-74 15-44 (85)
18 1we8_A Tudor and KH domain con 57.4 3.1 0.00011 31.3 0.9 30 44-73 15-44 (104)
19 2hh2_A KH-type splicing regula 56.4 6.5 0.00022 29.7 2.5 28 45-72 8-35 (107)
20 1wf3_A GTP-binding protein; GT 55.4 10 0.00035 33.2 4.0 41 44-87 228-275 (301)
21 2axy_A Poly(RC)-binding protei 53.8 3.1 0.00011 29.3 0.3 29 44-72 5-33 (73)
22 1wvn_A Poly(RC)-binding protei 53.4 4.1 0.00014 29.1 0.9 28 46-73 8-35 (82)
23 2cxc_A NUSA; transcription ter 52.1 39 0.0013 27.3 6.7 59 21-79 78-138 (144)
24 2p2r_A Poly(RC)-binding protei 51.2 3.4 0.00012 29.1 0.1 27 46-72 7-33 (76)
25 1x4m_A FAR upstream element bi 50.9 3.7 0.00013 30.3 0.3 29 46-74 17-45 (94)
26 1vig_A Vigilin; RNA-binding pr 48.2 5.3 0.00018 28.0 0.8 27 46-72 7-33 (71)
27 1x4n_A FAR upstream element bi 48.1 4.7 0.00016 29.6 0.5 29 44-72 15-43 (92)
28 1ec6_A RNA-binding protein NOV 47.2 4.9 0.00017 29.0 0.5 29 45-73 4-32 (87)
29 3krm_A Insulin-like growth fac 44.9 6.8 0.00023 30.9 1.0 31 44-74 3-33 (163)
30 1j5k_A Heterogeneous nuclear r 44.5 4.9 0.00017 29.2 0.1 27 46-72 16-42 (89)
31 2ycb_A Beta-CAsp RNAse, cleava 40.8 16 0.00053 35.5 3.1 54 19-77 7-61 (636)
32 2cte_A Vigilin; K homology typ 39.8 7.5 0.00026 28.6 0.5 34 46-79 19-52 (94)
33 3af5_A Putative uncharacterize 39.7 16 0.00054 35.6 2.9 54 19-77 16-70 (651)
34 2dgr_A Ring finger and KH doma 39.6 5 0.00017 29.3 -0.5 25 49-73 15-39 (83)
35 2hh3_A KH-type splicing regula 39.0 10 0.00035 28.8 1.2 31 43-73 10-40 (106)
36 2ctl_A Vigilin; K homology typ 37.9 11 0.00036 28.1 1.1 30 45-74 18-47 (97)
37 2jvf_A De novo protein M7; tet 37.8 1.2E+02 0.0042 22.4 7.6 42 37-88 10-54 (96)
38 2cxc_A NUSA; transcription ter 37.8 26 0.0009 28.3 3.5 47 27-73 19-65 (144)
39 2ctk_A Vigilin; K homology typ 36.8 5.8 0.0002 30.0 -0.5 30 43-72 16-45 (104)
40 2xr1_A Cleavage and polyadenyl 33.4 14 0.00049 35.9 1.5 53 19-76 11-64 (640)
41 2ctm_A Vigilin; K homology typ 32.9 11 0.00036 28.1 0.3 30 45-74 18-47 (95)
42 2jzx_A Poly(RC)-binding protei 29.6 10 0.00036 29.7 -0.2 30 45-74 6-35 (160)
43 2anr_A Neuro-oncological ventr 29.4 13 0.00044 29.7 0.3 30 45-74 7-36 (178)
44 2jvz_A KH type-splicing, FAR u 28.9 15 0.00051 28.7 0.6 26 47-72 5-30 (164)
45 2anr_A Neuro-oncological ventr 27.0 15 0.00052 29.3 0.3 29 44-72 104-132 (178)
46 1j4w_A FUSE binding protein; s 25.9 21 0.0007 28.5 0.9 28 45-72 105-132 (174)
47 3krm_A Insulin-like growth fac 25.6 23 0.00078 27.8 1.2 28 46-73 87-114 (163)
48 2jzx_A Poly(RC)-binding protei 25.4 16 0.00054 28.6 0.2 31 44-74 89-119 (160)
49 1ib8_A Conserved protein SP14. 25.1 2.7E+02 0.0092 22.4 8.2 75 19-97 12-90 (164)
50 1iv3_A 2-C-methyl-D-erythritol 24.2 1.4E+02 0.005 24.4 5.8 49 28-88 83-131 (152)
51 3h90_A Ferrous-iron efflux pum 23.3 1.6E+02 0.0056 25.0 6.3 73 17-91 207-280 (283)
52 2ycb_A Beta-CAsp RNAse, cleava 23.3 60 0.002 31.4 3.8 74 21-107 76-150 (636)
53 3af5_A Putative uncharacterize 23.3 65 0.0022 31.3 4.1 49 21-71 85-134 (651)
54 3elg_A Uncharacterized peripla 23.1 1.2E+02 0.0041 23.3 4.9 30 20-49 16-48 (128)
55 1j4w_A FUSE binding protein; s 23.0 20 0.00069 28.5 0.3 28 46-73 5-32 (174)
56 2pmp_A 2-C-methyl-D-erythritol 22.5 1.6E+02 0.0055 24.3 5.8 49 28-88 86-134 (160)
57 1t0a_A 2C-methyl-D-erythritol 22.5 1.6E+02 0.0055 24.3 5.7 50 28-89 85-134 (159)
58 1gx1_A 2-C-methyl-D-erythritol 22.0 1.7E+02 0.0057 24.2 5.7 49 28-88 84-132 (160)
59 2ctf_A Vigilin; K homology typ 22.0 22 0.00076 26.7 0.4 20 53-72 36-55 (102)
60 2xr1_A Cleavage and polyadenyl 21.5 72 0.0025 30.9 4.0 74 21-107 80-154 (640)
61 3re3_A 2-C-methyl-D-erythritol 21.1 1.7E+02 0.0059 24.2 5.7 50 28-89 89-138 (162)
No 1
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-77 Score=528.53 Aligned_cols=224 Identities=91% Similarity=1.320 Sum_probs=204.5
Q ss_pred CccccCceeeEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCC
Q 026316 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (240)
Q Consensus 1 ~~~~~~~~~kwia~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~ 80 (240)
|+.+|+.+++|++|+.+|++||+||.++|.++|||+|+|+|++++++|+||+++|++|||++|+++++|++.|+++|+++
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccceeeeEEe
Q 026316 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKF 160 (240)
Q Consensus 81 ~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~rArte~~ 160 (240)
+++++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+|||+|||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGakGik--------I~iSGRL~GaiARtE~~ 152 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE--------VIVSGKLRAQRAKSMKF 152 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCCSEEE--------CCBCSCGGGSSCCCBCC
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCceEE--------EEEecccCCceeeEeee
Confidence 8999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eeceeeecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCcCCCCCCCCCCCCeEEEccCCccc-ccCCccc
Q 026316 161 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV-YVAPATA 232 (240)
Q Consensus 161 ~~G~vl~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~~p~g~~~p~~~lpd~v~i~~~~~~~-~~~~~~~ 232 (240)
++|+|+|||||++++||||+++|+|+||+||||||||++|||+|++||.++|||+|+|++|+++. +.+|.++
T Consensus 153 ~eG~vlhTlqtlra~IDya~~~a~T~yGviGVKVWI~~~~dp~g~~g~~~~lpD~v~i~~pk~~~~~~~~~~~ 225 (227)
T 3iz6_B 153 KDGYMISSGQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENELRPPALV 225 (227)
T ss_dssp EEECCCSSSSCTTSCEEECCCCCBCSSSBCCCCCEEECSCTTSCCCCCSSCCCCCCSCCCCSSCCCC------
T ss_pred eCCeecccCChhhheeeEEEEEEEcCCeeEEEEEEEECCCCcccccCCCCCCCCeEEEeCCCcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999985 4555544
No 2
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=2.3e-74 Score=512.30 Aligned_cols=215 Identities=71% Similarity=1.096 Sum_probs=210.2
Q ss_pred CccccCceeeEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCC
Q 026316 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (240)
Q Consensus 1 ~~~~~~~~~kwia~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~ 80 (240)
|+.+|+.+++||+|+.++++||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|++|++|++.|+++|+++
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccceeeeEEe
Q 026316 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKF 160 (240)
Q Consensus 81 ~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~rArte~~ 160 (240)
++++.|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+|||+|||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGakGik--------I~iSGRL~Ga~ARtE~~ 152 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCE--------VVVSGKLRAARAKAMKF 152 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTCSEEE--------EEEEECSSSSSCEEEEE
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCceeE--------EEEecccCCceeeEEee
Confidence 8999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eeceeeecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCcC-CCCCCCCCCCCeEEEccCCcccc
Q 026316 161 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQK-GKQGPTTPLPDLVTIHPLKEEVY 226 (240)
Q Consensus 161 ~~G~vl~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~~p~-g~~~p~~~lpd~v~i~~~~~~~~ 226 (240)
++|+|+|||||++++||||+++|+|+||+||||||||+ ||+ |++|| .+|||+|+|++|++++.
T Consensus 153 ~eG~vlhTgqtlra~IDYa~~~a~T~yGviGVKVWI~~--dp~~g~~g~-~~lpD~v~i~epk~~~~ 216 (240)
T 3u5c_D 153 ADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGP-KALPDAVTIIEPKEEEP 216 (240)
T ss_dssp EEECCCCSSHHHHHHEEEEEEEEECSSCEEEEEEEEEC--CGGGCSSSC-SSCTTCCEECCCCCCCC
T ss_pred ecCeeccCCChhhheeeEEEEEEEcCCeeEEEEEEEEe--CcccccCCC-CCCCCeEEEECCccccC
Confidence 99999999999999999999999999999999999999 999 99999 99999999999998853
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.4e-75 Score=516.95 Aligned_cols=217 Identities=85% Similarity=1.245 Sum_probs=190.3
Q ss_pred CccccCceeeEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCC
Q 026316 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (240)
Q Consensus 1 ~~~~~~~~~kwia~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~ 80 (240)
|+.+|+.+++|++|+.++.+||+||.++|.++|||+|+|+|++++++|+||+++|++|||++|+++++|++.|+++|++.
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccceeeeEEe
Q 026316 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKF 160 (240)
Q Consensus 81 ~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~rArte~~ 160 (240)
+++++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+|||+|||
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGakGik--------I~iSGRL~GaiARtE~~ 152 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCE--------VVVSGKLRGQRAKSMKF 152 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEE--------EEECSSGGGSSCCCBCC
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCceEE--------EEEecchhhHhhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred eeceeeecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCcCCCCCCCCCCCCeEEEccCCccc
Q 026316 161 KDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 225 (240)
Q Consensus 161 ~~G~vl~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~~p~g~~~p~~~lpd~v~i~~~~~~~ 225 (240)
++|+|||||+|++++||||+++|+|+||+||||||||++|||+|++||+++|||.|+|++|+++.
T Consensus 153 ~eG~vLhTg~plra~IDYa~~~a~T~yGvlGVKVWI~~~~dp~g~~gp~~~lpD~v~i~e~k~~~ 217 (243)
T 2zkq_c 153 VDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217 (243)
T ss_dssp EEESSHHHHSSTTCCEEEEEECCCCSSCCCCEEEEEECCCC------------------------
T ss_pred cCcEEeecCchhhhceeEEEEEEEcCCceEEEEEEEecCCCcCCcCCCCCCCCCeEEEeCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999984
No 4
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=1.7e-71 Score=494.99 Aligned_cols=216 Identities=51% Similarity=0.902 Sum_probs=211.8
Q ss_pred cccCceeeEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCC
Q 026316 3 TQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPEN 82 (240)
Q Consensus 3 ~~~~~~~kwia~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~ 82 (240)
.+|+.+++||+++..+++||+||.++|.++|||+|+|+|++++++|+||+++|++|||++|+++++|++.|+++|++.++
T Consensus 6 ~~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~ 85 (243)
T 2xzm_C 6 RAINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDD 85 (243)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTT
T ss_pred hhhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccceeeeEEeee
Q 026316 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKD 162 (240)
Q Consensus 83 ~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~rArte~~~~ 162 (240)
+++|++.+|++|++||.++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+|||+|||++
T Consensus 86 ~v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGakGIk--------I~iSGRL~GaiARtE~~~e 157 (243)
T 2xzm_C 86 QIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCE--------IIISGKLKQQRAKTMKFKQ 157 (243)
T ss_dssp TSEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCSEEE--------EEEEECTTSSSCEEEEEEE
T ss_pred eEEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCCceEE--------EEEeCCccchhheeeeeeC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ceeeecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCcCCCC--CCCCCCCCeEEEccCCcccc
Q 026316 163 GYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQ--GPTTPLPDLVTIHPLKEEVY 226 (240)
Q Consensus 163 G~vl~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~~p~g~~--~p~~~lpd~v~i~~~~~~~~ 226 (240)
|+|||||+|++++||||+++|+|+||+||||||||++|||+|++ ||+++|||.|+|++|+++++
T Consensus 158 G~vL~T~rplra~IDYa~~~a~T~yGvlGVKVWI~~~~~~~g~~~~gp~~~lpD~v~i~e~k~~~~ 223 (243)
T 2xzm_C 158 GYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQITD 223 (243)
T ss_dssp ECCCCSSSHHHHSEEEEEEEEECSSSEEEEEEEEECCCCCCTTCCSSCCSCCSSCCBCCCCCCCCC
T ss_pred CeEeecCcchhhheEEEEEEEEcCCceEEEEEEEecCCCcCCcccCCCCCCCCCeEEEeCCCcccc
Confidence 99999999999999999999999999999999999999999999 99999999999999999864
No 5
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2e-64 Score=441.60 Aligned_cols=204 Identities=37% Similarity=0.579 Sum_probs=177.4
Q ss_pred cCceeeEeecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCee
Q 026316 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84 (240)
Q Consensus 5 ~~~~~kwia~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v 84 (240)
|+.+++|.+++.++.+||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|+++++|++.|+++|++ +++
T Consensus 1 m~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v 78 (210)
T 3j20_C 1 MAIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENP 78 (210)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSC
T ss_pred CcchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--Cce
Confidence 678889999999999999999999999999999999999999999999999999999999999999999999986 568
Q ss_pred EEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccceeeeEEeeece
Q 026316 85 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQRAKSMKFKDGY 164 (240)
Q Consensus 85 ~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~rArte~~~~G~ 164 (240)
+|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+|||+|||++|+
T Consensus 79 ~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~GakGik--------I~iSGRL~GeiARtE~~~eG~ 150 (210)
T 3j20_C 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVE--------IRLSGKLTGERAKSIRFYQGY 150 (210)
T ss_dssp EEEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSEEE--------EEEEECTTTTSCEEEEEEEEC
T ss_pred EEEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCceEE--------EEEecccCcceeeEEeeecce
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred e-eecCccccc--ceeEEEEEEecCCeeeeEEEEEEcCCCcCCCCCCCCCCCCeEEEccCCcccccCCc
Q 026316 165 M-ISSGQPVNE--YIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPA 230 (240)
Q Consensus 165 v-l~tG~~~~~--~Idya~~~a~t~~GvlGIKVwI~~~~~p~g~~~p~~~lpd~v~i~~~~~~~~~~~~ 230 (240)
| ||| +++ +||||+++|+|+||+||||||||+| +.+|||+++|++++.++.+.+.
T Consensus 151 vpl~t---l~a~~~IDya~~~a~T~yGviGVKVwI~~~---------e~~lpd~~~i~~~~~~~~~~~~ 207 (210)
T 3j20_C 151 LAKVG---NPAETLVSKGYAQALLKLGVIGVKVAIMPP---------GARLPDEIEIIEKPVEEEVVSN 207 (210)
T ss_dssp CCCSS---SHHHHHSEEEEEEEECSSCEEEEEEEEECC---------C---------------------
T ss_pred eeccC---CcchhcEEEEEEEEEcCCcEEEEEEEEECC---------CCCCCCcEEEeCcchhhhhhcc
Confidence 9 777 766 9999999999999999999999997 6789999999998888655443
No 6
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=2.4e-60 Score=421.20 Aligned_cols=200 Identities=24% Similarity=0.323 Sum_probs=176.9
Q ss_pred CceeeEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhC
Q 026316 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (240)
Q Consensus 6 ~~~~kwia~~~~y~~-------Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~ 78 (240)
.+.|+||+++++|++ ||+||.++|.++|||+|||+|+++.++|+||+++|++|||++|+++++|++.|++.|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~ 96 (233)
T 3i1m_C 17 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 96 (233)
T ss_dssp CCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHT
T ss_pred CceeEEecCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 478999999999996 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccc-eeee
Q 026316 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ-RAKS 157 (240)
Q Consensus 79 ~~~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~-rArt 157 (240)
. +++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+ |||+
T Consensus 97 ~---~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGakGik--------I~iSGRL~GaeiARt 165 (233)
T 3i1m_C 97 V---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIK--------VEVSGRLGGAEIART 165 (233)
T ss_dssp S---CBCCEEEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEE--------EEEESSTTSCSSCCC
T ss_pred C---ceEEEEEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCCceEE--------EEEccccCCCcceeE
Confidence 4 59999999999999999999999999999999999999999999999999999 9999999999 9999
Q ss_pred EEeeecee-eecCcccccceeEEEEEEecCCeeeeEEEEEEcCCCcCCCCCCCCCCCCeEEEccCCcccccCC
Q 026316 158 MKFKDGYM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAP 229 (240)
Q Consensus 158 e~~~~G~v-l~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~~p~g~~~p~~~lpd~v~i~~~~~~~~~~~ 229 (240)
|||++|+| ||| ++++||||+++|+|+||+||||||||++ +.+|+.-.+.++++..+-+|
T Consensus 166 E~~~eG~vPL~T---lra~IDY~~~~a~T~yGviGVKVWI~~g----------e~~~~~~~~~~~~~~~~~~~ 225 (233)
T 3i1m_C 166 EWYREGRVPLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKG----------EILGGMAAVEQPEKPAAQPK 225 (233)
T ss_dssp CBCCEECCCTTC---SSSEEEEEEECCEETTEECEEEEEEEEE----------CC------------------
T ss_pred EEEecCeeeccc---cccccEEEEEEEEcCCeeEEEEEEEECC----------CcCCchhhhhccccccCCCc
Confidence 99999999 999 9999999999999999999999999997 34665544444444433333
No 7
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=1.4e-59 Score=417.80 Aligned_cols=194 Identities=27% Similarity=0.370 Sum_probs=176.9
Q ss_pred CceeeEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhC
Q 026316 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (240)
Q Consensus 6 ~~~~kwia~~~~y~~-------Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~ 78 (240)
...|+||+++++|++ ||+||.++|.++|||+|+|+|+++.++|+||+++|++|||++|+++++|++.|+++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~ 96 (239)
T 2vqe_C 17 DWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG 96 (239)
T ss_dssp CCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST
T ss_pred CcceEEeCCHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC
Confidence 478999999999996 9999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccc-eeee
Q 026316 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ-RAKS 157 (240)
Q Consensus 79 ~~~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~-rArt 157 (240)
.+++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+ |||+
T Consensus 97 ---~~v~I~i~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~gakGIk--------I~iSGRL~GaeiARt 165 (239)
T 2vqe_C 97 ---KNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAK--------VIVSGRIGGAEQART 165 (239)
T ss_dssp ---TCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEE--------EEECSCTTTCSSCCC
T ss_pred ---CeeEEEEEEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCCCceE--------EEEcCCcchhhhhhh
Confidence 589999999999999999999999999999999999999999999999999999 9999999999 9999
Q ss_pred EEeeecee-eecCcccccceeEEEEEEecCCeeeeEEEEEEcCC-CcCCCCCCCCCCC
Q 026316 158 MKFKDGYM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEW-DQKGKQGPTTPLP 213 (240)
Q Consensus 158 e~~~~G~v-l~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~~-~p~g~~~p~~~lp 213 (240)
|||++|+| ||| ++++||||+++|+|+||+||||||||+++ .|.+..+|..++|
T Consensus 166 E~~~eG~vpL~T---lra~IDYa~~~a~T~yGviGVKVWI~~ge~l~~~~~~~~~~~~ 220 (239)
T 2vqe_C 166 EWAAQGRVPLHT---LRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELP 220 (239)
T ss_dssp BCCEEECCCTTC---GGGCEEEEEECCBCSSCBCCEEEEEECCCC-------------
T ss_pred hhhhcCccccCC---ccceeEEEEEEEEcCCeeEEEEEEEEcCCcCCCcCCCCCCCCc
Confidence 99999999 999 99999999999999999999999999985 3555555554444
No 8
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=6.4e-60 Score=412.13 Aligned_cols=180 Identities=26% Similarity=0.354 Sum_probs=175.9
Q ss_pred CceeeEeecCcchHH-------HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhC
Q 026316 6 SKKRKFVADGVFFAE-------LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (240)
Q Consensus 6 ~~~~kwia~~~~y~~-------Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~ 78 (240)
.+.|+|||++++|++ ||+||.++|.++|||+|||+|++++++|+||+++|++|||++|+++++|++.|+++|+
T Consensus 16 ~w~S~W~a~~k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~ 95 (206)
T 3r8n_C 16 PWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAG 95 (206)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHS
T ss_pred CceeEEcCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHC
Confidence 478999999999996 9999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEccccccc-eeee
Q 026316 79 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKLRAQ-RAKS 157 (240)
Q Consensus 79 ~~~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL~G~-rArt 157 (240)
. +++|++.+|++|++||+++|++||+|||+|++|||||+++++++|++||+||| |+|||||+|+ |||+
T Consensus 96 ~---~v~I~i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~gakGik--------I~iSGRL~Gae~AR~ 164 (206)
T 3r8n_C 96 V---PAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIK--------VEVSGRLGGAEIART 164 (206)
T ss_dssp S---CBCCBCCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEE--------EECCSSSTTCSSCCC
T ss_pred C---ceEEEEEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCCCceE--------EEEccccCCCcceeE
Confidence 4 59999999999999999999999999999999999999999999999999999 9999999999 9999
Q ss_pred EEeeecee-eecCcccccceeEEEEEEecCCeeeeEEEEEEcC
Q 026316 158 MKFKDGYM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 199 (240)
Q Consensus 158 e~~~~G~v-l~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~ 199 (240)
|||++|+| ||| ++++||||+++|+|+||+||||||||++
T Consensus 165 e~~~eG~vpl~t---lra~IDy~~~~a~T~yGviGVKVwI~~g 204 (206)
T 3r8n_C 165 EWYREGRVPLHT---LRADIDYNTSEAHTTYGVIGVKVWIFKG 204 (206)
T ss_dssp CCCEESCCCTTC---SSSCEEEEEEEEEETTEEEEEEEEEECC
T ss_pred EEEecceeeccc---cccccEEEEEEEEcCCeeEEEEEEEEcC
Confidence 99999999 999 9999999999999999999999999987
No 9
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=9.2e-59 Score=407.66 Aligned_cols=183 Identities=17% Similarity=0.268 Sum_probs=178.0
Q ss_pred CceeeEeecCcchHH-------HHHHHHhhhcc-----C---CeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHH
Q 026316 6 SKKRKFVADGVFFAE-------LNEVLTRELAE-----D---GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELT 70 (240)
Q Consensus 6 ~~~~kwia~~~~y~~-------Ire~l~k~~~~-----a---gis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~ 70 (240)
...|+||+++++|++ ||+||+++|.+ + ||++|+|+|+++.++|+||+++|+++||++|+++++|+
T Consensus 17 ~w~S~W~a~~k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~ 96 (218)
T 3bbn_C 17 SHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLK 96 (218)
T ss_dssp CCSBCCCCCTTSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHH
T ss_pred CcceEEeCChhHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHH
Confidence 478999999999996 99999999997 8 99999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEEEEecCCCcChHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhCCcceeeeeeeceeEEEcccc
Q 026316 71 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEFNFLVSSKVIVSGKL 150 (240)
Q Consensus 71 ~~L~k~~~~~~~~v~I~v~~v~~p~~~a~~iA~~ia~~Le~~~~fRra~~~~l~~~m~~gakGik~~~~~~~~I~iSGRL 150 (240)
+.|++.|++.+++++|++.+|++|++||.++|++||+|||+|++|||||+++++++|++||+||| |+|||||
T Consensus 97 ~~l~k~~~~~~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~gakGik--------I~iSGRL 168 (218)
T 3bbn_C 97 INVQKELNCVNRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQ--------IQIAGRI 168 (218)
T ss_dssp HHHHHHSCSSCCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEE--------EECCSCC
T ss_pred HHHHHHhccCCceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCCCeEE--------EEEccCc
Confidence 99999997666899999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccc-eeeeEEeeecee-eecCcccccceeEEEEEEecCCeeeeEEEEEEcC
Q 026316 151 RAQ-RAKSMKFKDGYM-ISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLE 199 (240)
Q Consensus 151 ~G~-rArte~~~~G~v-l~tG~~~~~~Idya~~~a~t~~GvlGIKVwI~~~ 199 (240)
+|+ |||+|||++|+| ||| ++++||||+++|+|+||+||||||||++
T Consensus 169 ~Gae~AR~e~~~eG~vpl~t---lra~IDy~~~~a~T~yGviGVKVWI~~~ 216 (218)
T 3bbn_C 169 DGKEIARIEWIREGRVPLQT---IRAKIDYCAYTVRTIYGVLGIKIWIFMG 216 (218)
T ss_dssp TTCSSCCCCEEEEECCCSSC---STTCCBCCEEECCCSSCCCEEEEEEECC
T ss_pred chhhheeEEeEecccccCCc---cccceEEEEEEEEcCCeeEEEEEEEecC
Confidence 998 999999999999 999 9999999999999999999999999997
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.88 E-value=4.2e-23 Score=159.51 Aligned_cols=87 Identities=80% Similarity=1.064 Sum_probs=84.5
Q ss_pred ecCcchHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEEEEec
Q 026316 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (240)
Q Consensus 13 a~~~~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~~v~ 92 (240)
+|+.+|++||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|.+|++|+..|++.|++.+++++|++.+|+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999987889999999999
Q ss_pred CCCcChH
Q 026316 93 NRGLCAI 99 (240)
Q Consensus 93 ~p~~~a~ 99 (240)
+|++||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999985
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=95.47 E-value=0.023 Score=47.06 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhhccCCee--eeEE-EEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCC-CCeeEEEEEEe-c
Q 026316 18 FAELNEVLTRELAEDGYS--GVEV-RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP-ENSVELYAEKV-N 92 (240)
Q Consensus 18 y~~Ire~l~k~~~~agis--~IeI-~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~-~~~v~I~v~~v-~ 92 (240)
..++.+||...|...|+. .+++ ....+.+.+.|.....|++||+.|+.++.|+..+....+.. ..+|.|++... +
T Consensus 4 ~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~~~~V~LDve~YRe 83 (152)
T 2pt7_G 4 LHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTYGYSIRLEISTFLQ 83 (152)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHHSCEEEEEETTHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcCCceEEEEhHHhHH
Confidence 346899999999999985 4666 35577899999999999999999999999999998766521 13455554322 1
Q ss_pred CCCcChHHHHHHHHHHHhcC-ch-----hHHHHHHHHHHH
Q 026316 93 NRGLCAIAQAESLRYKLLGG-LA-----VRRACYGVLRFI 126 (240)
Q Consensus 93 ~p~~~a~~iA~~ia~~Le~~-~~-----fRra~~~~l~~~ 126 (240)
+.+-.=.-+|..+|.+..+. .+ =||.++.+|+.-
T Consensus 84 rReetL~~lA~~~A~kV~~tgk~v~~p~erriIH~aLq~~ 123 (152)
T 2pt7_G 84 NQEKVMDTQLQSVIMTVHEVGKGQMKAPDGVLTYIALKKL 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEECCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcCCCCCchHHHHHHHHhC
Confidence 22333445666666665432 21 356777777654
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=91.63 E-value=0.35 Score=42.35 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=71.0
Q ss_pred hHHHHHHHHhhhccCCee-eeEEEEc--CCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCC-C--CeeEEEEEEe
Q 026316 18 FAELNEVLTRELAEDGYS-GVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP-E--NSVELYAEKV 91 (240)
Q Consensus 18 y~~Ire~l~k~~~~agis-~IeI~rt--~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~-~--~~v~I~v~~v 91 (240)
.....+||+..|...|+. .|++... .+.+.|.|.....+.+||++|+.++.|+..+....+.. . .++.|++...
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~~~rv~LDi~~Y 142 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENY 142 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 345789999999988874 4555432 37888888888899999999999999999988776522 1 2444443111
Q ss_pred -cCCCcChHHHHHHHHHHHhc-Cch---------hHHHHHHHHHHHHHhCCccee
Q 026316 92 -NNRGLCAIAQAESLRYKLLG-GLA---------VRRACYGVLRFIMESGAKGCE 135 (240)
Q Consensus 92 -~~p~~~a~~iA~~ia~~Le~-~~~---------fRra~~~~l~~~m~~gakGik 135 (240)
.+..-.=.-+|+.+|.+..+ +.+ =||.++.+|+ ...|+.
T Consensus 143 R~rR~e~L~~lA~~~A~kV~~tg~~v~L~PM~~~ERriIH~al~-----~~~~V~ 192 (225)
T 3gku_A 143 RERRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQ-----NDKYVV 192 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTT-----TCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEccCCCHHHHHHHHHHHc-----cCCCcE
Confidence 11122223455666665543 222 3666666663 345555
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=62.37 E-value=7.9 Score=33.76 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=33.5
Q ss_pred CeEEEEEEecccc---eeecCCcccHHHH----HHHHHHHhCCCCCeeEEEE
Q 026316 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA 88 (240)
Q Consensus 44 ~~i~I~I~~~rP~---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v 88 (240)
..+.-+||+.|++ +|||++|+.|+++ +..|++.|+ .+|.+.+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~---~~v~l~l 286 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILG---RPVYLEL 286 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SCEEEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhC---CceEEEE
Confidence 4688899999987 6999999999765 567888898 5676653
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=60.22 E-value=21 Score=30.92 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=32.6
Q ss_pred CeEEEEEEecccc---eeecCCcccHHHH----HHHHHHHhCCCCCeeEEEE
Q 026316 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYA 88 (240)
Q Consensus 44 ~~i~I~I~~~rP~---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~v 88 (240)
.++...|++.+.+ ++||++|+.|+++ +..|++.|+ .++.+..
T Consensus 229 ~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~---~~v~l~l 277 (301)
T 1ega_A 229 YDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFE---APVHLEL 277 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTT---SCEEEEE
T ss_pred EEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHC---CCeEEEE
Confidence 4677889998776 6999999999766 567888887 4666653
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=59.32 E-value=4.9 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.6
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
..++.|-...-+.|||++|+.|++|++.-
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~t 36 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHES 36 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHHH
Confidence 34566667778899999999998877663
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=59.11 E-value=3.4 Score=28.85 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.++.|-...-|.|||++|+.|++|++.-
T Consensus 5 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~t 32 (76)
T 1dtj_A 5 VEMAVPENLVGAILGKGGKTLVEYQELT 32 (76)
T ss_dssp EEEEEETTTHHHHHCSTTHHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCchHHHHHHHHh
Confidence 4555666677789999999998877653
No 17
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=58.38 E-value=2.7 Score=30.34 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=22.7
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
...+.|-..+-+.|||++|+.|++|++.-.
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tg 44 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERAG 44 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHHT
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHHC
Confidence 345566667788999999999988776543
No 18
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=57.41 E-value=3.1 Score=31.30 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=23.8
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
....+.|-..+-+.|||++|+.|++|++.-
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 345667777888899999999998877664
No 19
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=56.43 E-value=6.5 Score=29.75 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
..++.|-...-+.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 4567778888899999999999887665
No 20
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=55.43 E-value=10 Score=33.20 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=32.2
Q ss_pred CeEEEEEEecccc---eeecCCcccHHHH----HHHHHHHhCCCCCeeEEE
Q 026316 44 VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELY 87 (240)
Q Consensus 44 ~~i~I~I~~~rP~---~iIG~~g~~i~~l----~~~L~k~~~~~~~~v~I~ 87 (240)
..+...|++.|++ ++||++|+.|+++ +..|++.|+ .+|.+.
T Consensus 228 ~~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~---~~v~l~ 275 (301)
T 1wf3_A 228 LYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLG---KKVYLD 275 (301)
T ss_dssp EEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT---SEEEEE
T ss_pred EEEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHC---CceEEE
Confidence 3566689999987 5999999999765 567888898 577665
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=53.81 E-value=3.1 Score=29.29 Aligned_cols=29 Identities=10% Similarity=0.491 Sum_probs=22.6
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
...++.|....-|.|||++|..|++|++.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 34556666777788999999999887765
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=53.38 E-value=4.1 Score=29.12 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.4
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.++.|-...-+.|||++|+.|++|++.-
T Consensus 8 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~s 35 (82)
T 1wvn_A 8 HELTIPNNLIGCIIGRQGANINEIRQMS 35 (82)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEchHhccceeCCCchhHHHHHHHh
Confidence 4555666677789999999998877653
No 23
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=52.14 E-value=39 Score=27.30 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=43.6
Q ss_pred HHHHHHhhhccCCeeeeEEEEcCCeEEEEEEec--ccceeecCCcccHHHHHHHHHHHhCC
Q 026316 21 LNEVLTRELAEDGYSGVEVRVTPVRTEIIIRAT--RTQNVLGEKGRRIRELTSVVQKRFKF 79 (240)
Q Consensus 21 Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~--rP~~iIG~~g~~i~~l~~~L~k~~~~ 79 (240)
..+|+.+.|.-|.+.+|.+.-........+++. .-+..||++|++++-..+.....++.
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 889999999999999998864333344444444 34469999999998888777766653
No 24
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=51.18 E-value=3.4 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEEEecccceeecCCcccHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
.++.|-...-|.|||++|+.|++|++.
T Consensus 7 ~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 7 HELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChHHcceEECCCChHHHHHHHH
Confidence 455555667778999999999887665
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=50.92 E-value=3.7 Score=30.31 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=22.2
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
+++.|-..+-+.|||++|+.|++|++.-.
T Consensus 17 ~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tg 45 (94)
T 1x4m_A 17 QEIMIPASKAGLVIGKGGETIKQLQERAG 45 (94)
T ss_dssp EEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred EEEEEChhhcceEECCCCHHHHHHHHHHC
Confidence 44555556777899999999999887654
No 26
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=48.24 E-value=5.3 Score=27.99 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEEecccceeecCCcccHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
..+.|-...-+.|||++|+.|++|++.
T Consensus 7 ~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 7 VEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 445555566778999999999988776
No 27
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=48.11 E-value=4.7 Score=29.62 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=21.7
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
...++.|-...-+.|||++|+.|++|++.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 15 MTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp EEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 34555666667778999999999887664
No 28
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=47.19 E-value=4.9 Score=29.02 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=21.7
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.+++.|-...-|.|||++|+.|++|++.-
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~t 32 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQELT 32 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHHh
Confidence 34556666677889999999998877653
No 29
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=44.86 E-value=6.8 Score=30.92 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=24.9
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
..+++.|-...-|.|||++|+.|++|++.-.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 4566777778888999999999988877654
No 30
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=44.48 E-value=4.9 Score=29.25 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEEecccceeecCCcccHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
.++.|-...-+.|||++|+.|++|++.
T Consensus 16 ~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 16 TQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEChhhcceeECCCCHhHHHHHHH
Confidence 345555566778999999999887765
No 31
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=40.80 E-value=16 Score=35.50 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=41.6
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHh
Q 026316 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (240)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~ 77 (240)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+. .++.-+++|.+.|+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 61 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFEG----PEVVIYTKNPEIIT-ENGNLIRDIAKDIRKRI 61 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEET----TEEEEEESCTHHHH-SCTHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhh-cccHHHHHHHHHhhceE
Confidence 56888888888 578999999875 67899999999876 34566777777776643
No 32
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.80 E-value=7.5 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=23.1
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHHHHHhCC
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF 79 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~ 79 (240)
..+.|-..+-+.|||++|+.|++|++.-.-...+
T Consensus 19 ~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i 52 (94)
T 2cte_A 19 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQI 52 (94)
T ss_dssp EEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBC
T ss_pred EEEEEChHHeeeeECCCChhHHHHHHHHCCEEEe
Confidence 3444444566789999999999988764433333
No 33
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=39.66 E-value=16 Score=35.64 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=37.5
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHh
Q 026316 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (240)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~ 77 (240)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+.. ++.-+++|.+.|+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFEG----PELVIYVKNPEAIMK-DGELIKDLAKVLKKRI 70 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEECS----SSEEEEESSCC------CCSHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CeEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 45777777788 567899998865 568899999998773 4566777777777643
No 34
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.60 E-value=5 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=18.4
Q ss_pred EEEecccceeecCCcccHHHHHHHH
Q 026316 49 IIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 49 ~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.|-...-+.|||++|+.|++|++.=
T Consensus 15 ~VP~~~vG~IIGkgG~tIk~Iqe~T 39 (83)
T 2dgr_A 15 RVPYRVVGLVVGPKGATIKRIQQRT 39 (83)
T ss_dssp ECCHHHHHHHHTTTTSSHHHHHHHT
T ss_pred EeChHHeeeeECCCchHHHHHHHHh
Confidence 3333455679999999999987763
No 35
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=39.00 E-value=10 Score=28.82 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCeEEEEEEecccceeecCCcccHHHHHHHH
Q 026316 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 43 ~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
+..+++.|-..+-+.|||++|+.|++|++.-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 3456777777888899999999998877654
No 36
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.90 E-value=11 Score=28.12 Aligned_cols=30 Identities=13% Similarity=0.323 Sum_probs=22.3
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
.+.+.|-...-+.|||++|..|++|++.-.
T Consensus 18 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg 47 (97)
T 2ctl_A 18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHD 47 (97)
T ss_dssp EEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred eEEEEECHHHhhhcCCCCchhHHHHHHHHC
Confidence 445555556667899999999999887644
No 37
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=37.82 E-value=1.2e+02 Score=22.39 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=27.3
Q ss_pred eEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHH---hCCCCCeeEEEE
Q 026316 37 VEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR---FKFPENSVELYA 88 (240)
Q Consensus 37 IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~---~~~~~~~v~I~v 88 (240)
|.|+|....++|.|.+.- |++++.--+.|++. -|- .+++|.+
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaraga--rnvqiti 54 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGA--RNVQITI 54 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTC--SEEEEEE
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccc--cceEEEE
Confidence 678899999999988865 55554444444443 342 6777765
No 38
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=37.76 E-value=26 Score=28.31 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=36.9
Q ss_pred hhhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHH
Q 026316 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 27 k~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
..+..+.+-++-+--..+++.+.+....-|..+|.+|++++.+.+.|
T Consensus 19 e~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 35567778887665556888888777777899999999999988776
No 39
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.82 E-value=5.8 Score=30.01 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCeEEEEEEecccceeecCCcccHHHHHHH
Q 026316 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 43 ~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
|....+.|-..+-+.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 444555555567778999999999887765
No 40
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=33.42 E-value=14 Score=35.89 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=40.4
Q ss_pred HHHHHHHHhhh-ccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHH
Q 026316 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76 (240)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~ 76 (240)
.+|++-+.+.+ .++.+++||.+- -+|.||+..|..+.. ++.-+++|.+.|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 64 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFEG----PQLVLYTEEPRKFAD-DGNIIRNLAKELRTR 64 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEET----TEEEEEESCHHHHHH-CTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEC----CEEEEEeCCHHHhcc-ccHHHHHHHHHhhce
Confidence 56888888888 578999999875 578999999998763 445667777766664
No 41
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=32.92 E-value=11 Score=28.10 Aligned_cols=30 Identities=13% Similarity=0.428 Sum_probs=22.4
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
...+.|-..+-+.|||++|+.|++|++.-.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 18 SEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 445555556677899999999998877643
No 42
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=29.63 E-value=10 Score=29.71 Aligned_cols=30 Identities=10% Similarity=0.432 Sum_probs=22.7
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
.+++.|-...-|.+||++|+.|++|++.-.
T Consensus 6 ~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg 35 (160)
T 2jzx_A 6 TIRLLMHGKEVGSIIGKKGESVKKMREESG 35 (160)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEchhheeeeECCCcHHHHHHHHHHC
Confidence 445566666778899999999988877643
No 43
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=29.44 E-value=13 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
.+++.|....-|.|||++|+.|++|++.-.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg 36 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETG 36 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhC
Confidence 345566667778899999999998887643
No 44
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=28.94 E-value=15 Score=28.71 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEecccceeecCCcccHHHHHHH
Q 026316 47 EIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 47 ~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
++.|-...-+.+||++|+.|++|++.
T Consensus 5 ~~~Vp~~~~g~iIGk~G~~Ik~i~~~ 30 (164)
T 2jvz_A 5 EIMIPAGKAGLVIGKGGETIKQLQER 30 (164)
T ss_dssp EEEECTTCHHHHTCTTTHHHHHHHHT
T ss_pred EEEechhheeEEECCChHHHHHHHHH
Confidence 44555566778999999999887764
No 45
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=27.00 E-value=15 Score=29.33 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=22.6
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
..+++.|....-+.|||++|+.|++|++.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 35667777777789999999999887654
No 46
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=25.88 E-value=21 Score=28.48 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEEEecccceeecCCcccHHHHHHH
Q 026316 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 45 ~i~I~I~~~rP~~iIG~~g~~i~~l~~~ 72 (240)
.+++.|-...-+.|||++|+.|++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 4556666677778999999999887655
No 47
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=25.61 E-value=23 Score=27.77 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.++.|-...-+.|||++|+.|++|++.-
T Consensus 87 ~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 87 THIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 3556666777889999999999887654
No 48
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=25.44 E-value=16 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=23.2
Q ss_pred CeEEEEEEecccceeecCCcccHHHHHHHHH
Q 026316 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (240)
Q Consensus 44 ~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~ 74 (240)
...++.|-...-+.+||++|+.|++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 3455666666777899999999998877643
No 49
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=25.06 E-value=2.7e+02 Score=22.39 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhccCCeeeeEEEEc--CCeEEEEEEecccceeecCCcccHHHHHHHHHHHhC--CCCCeeEEEEEEecCC
Q 026316 19 AELNEVLTRELAEDGYSGVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK--FPENSVELYAEKVNNR 94 (240)
Q Consensus 19 ~~Ire~l~k~~~~agis~IeI~rt--~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~--~~~~~v~I~v~~v~~p 94 (240)
..|.+.++..+.. ||.-++++.. ...-.+.||+.+|+ |-.=....++...|...+. ..+.--.=+..||..|
T Consensus 12 ~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~---gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSP 87 (164)
T 1ib8_A 12 ELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE---GITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSP 87 (164)
T ss_dssp HHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSS---CCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECC
T ss_pred HHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCC---CCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCC
Confidence 4688888888888 9877777654 55666777877774 1222345677788888886 3222113467889999
Q ss_pred CcC
Q 026316 95 GLC 97 (240)
Q Consensus 95 ~~~ 97 (240)
+++
T Consensus 88 Gld 90 (164)
T 1ib8_A 88 GLE 90 (164)
T ss_dssp SSS
T ss_pred CCC
Confidence 876
No 50
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=24.18 E-value=1.4e+02 Score=24.40 Aligned_cols=49 Identities=12% Similarity=0.327 Sum_probs=37.8
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026316 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (240)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (240)
.+.+.||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 83 ~~~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 131 (152)
T 1iv3_A 83 LVEARGAK-------LLQASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTF 131 (152)
T ss_dssp HHHHTTCC-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44556664 236677889999987 78899999999999998766676654
No 51
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=23.30 E-value=1.6e+02 Score=24.99 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=43.7
Q ss_pred chHHHHHHHHhhhccCCeeeeEEEEcCCeEEEEEEeccccee-ecCCcccHHHHHHHHHHHhCCCCCeeEEEEEEe
Q 026316 17 FFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNV-LGEKGRRIRELTSVVQKRFKFPENSVELYAEKV 91 (240)
Q Consensus 17 ~y~~Ire~l~k~~~~agis~IeI~rt~~~i~I~I~~~rP~~i-IG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~~v 91 (240)
...+|++.+.+.=.-.++.++.+.+......+.+|..-|... +.+-.+-.+++++.|++.|+. ..+.|.++..
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~ep~ 280 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQDPC 280 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEECS
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEeccC
Confidence 344566666543111356777777777778888888766532 111123346777778777763 5677766543
No 52
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.29 E-value=60 Score=31.38 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcChH
Q 026316 21 LNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 99 (240)
Q Consensus 21 Ire~l~k~~~-~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~~v~~p~~~a~ 99 (240)
-.++|.+... ++|+.+| .-.++.-+|.+++.+|+.++|+.|..++++. +..+.. ...+..|.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~g~~~~~~~~i~----~~~~~~-------~~~~~~p~~~~~ 142 (636)
T 2ycb_A 76 AIRKIHEIVPEEAKITNI--SFDDVTCEVIIEARKPGLVIGKYGSTSREIV----KNTGWA-------PKILRTPPISSE 142 (636)
T ss_dssp HHHHHHHTSCSTTCEEEE--EEETTTTEEEEEESCTHHHHCTTSHHHHHHH----HHHCCE-------EEEEECCSSCCH
T ss_pred HHHHHHHhCCCccCccce--EecCCCceEEEEECCCCccccccchhHHHHh----hccCCc-------cceeecCCcchh
Confidence 5566665554 5788754 4456678899999999999999876655544 344431 122336666655
Q ss_pred HHHHHHHH
Q 026316 100 AQAESLRY 107 (240)
Q Consensus 100 ~iA~~ia~ 107 (240)
.+..-.+.
T Consensus 143 ~~~~i~~~ 150 (636)
T 2ycb_A 143 IIERIRRT 150 (636)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 53
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=23.27 E-value=65 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.409 Sum_probs=35.5
Q ss_pred HHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHH
Q 026316 21 LNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTS 71 (240)
Q Consensus 21 Ire~l~k~~~-~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~ 71 (240)
-.++|.+... ++|+.+| .-.++.-+|.+++.+|+.++|+.|..++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~ 134 (651)
T 3af5_A 85 AEKLIFEIVPKEAEITNI--AFDPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134 (651)
T ss_dssp HHHHHHHHSCGGGCCCEE--EEETTTTEEEEEESSTTTTSCTTSHHHHHHHH
T ss_pred HHHHHHHhCCCccCccce--eecCCCceEEEEECCCCccccccchhHHHHhh
Confidence 5556665553 5788754 44566788999999999999999876655444
No 54
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=23.06 E-value=1.2e+02 Score=23.33 Aligned_cols=30 Identities=3% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHhhhccCCeeeeEEEEc---CCeEEEE
Q 026316 20 ELNEVLTRELAEDGYSGVEVRVT---PVRTEII 49 (240)
Q Consensus 20 ~Ire~l~k~~~~agis~IeI~rt---~~~i~I~ 49 (240)
.+++|+.+.|..+.+..+++.+. ....+|.
T Consensus 16 ~~~~fi~~~fp~~~i~~v~~e~~~~~~~~YeV~ 48 (128)
T 3elg_A 16 AAREMIGKHFSQTKVAYIKIEKDLFQTTSYDVK 48 (128)
T ss_dssp HHHHHHHHHCTTSCEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHCCCCceEEEEEEcccCcCceEEEE
Confidence 48999999999999999999997 3445554
No 55
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=22.97 E-value=20 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEEEecccceeecCCcccHHHHHHHH
Q 026316 46 TEIIIRATRTQNVLGEKGRRIRELTSVV 73 (240)
Q Consensus 46 i~I~I~~~rP~~iIG~~g~~i~~l~~~L 73 (240)
.++.|-...-+.|||++|+.|++|++.-
T Consensus 5 ~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 5 IDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEChhheeeeecCCchHHHHHHHHh
Confidence 4556666677889999999998887754
No 56
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=22.47 E-value=1.6e+02 Score=24.32 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026316 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (240)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (240)
.+.+.||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 86 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 134 (160)
T 2pmp_A 86 LMDEAGYE-------IGNLDATLILQRPKI-----SPHKETIRSNLSKLLGADPSVVNLKA 134 (160)
T ss_dssp HHHHHTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEecCCcC-----HHHHHHHHHHHHHHHCCCcceEEEEE
Confidence 44556665 236777889999987 78899999999999998766676654
No 57
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=22.46 E-value=1.6e+02 Score=24.29 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=38.7
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEEE
Q 026316 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (240)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ 89 (240)
.+.+.||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|...
T Consensus 85 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 134 (159)
T 1t0a_A 85 LAKAKGFE-------LGNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKAT 134 (159)
T ss_dssp HHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcC-----hHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 44567765 236777888999987 788999999999999987667776553
No 58
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=22.03 E-value=1.7e+02 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=38.0
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEE
Q 026316 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (240)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v 88 (240)
.+.+.||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|..
T Consensus 84 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKA 132 (160)
T 1gx1_A 84 RIQAKGYT-------LGNVDVTIIAQAPKM-----LPHIPQMRVFIAEDLGCHMDDVNVKA 132 (160)
T ss_dssp HHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcc-----hHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 44566764 236777888999987 78899999999999998766777654
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.95 E-value=22 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=16.4
Q ss_pred cccceeecCCcccHHHHHHH
Q 026316 53 TRTQNVLGEKGRRIRELTSV 72 (240)
Q Consensus 53 ~rP~~iIG~~g~~i~~l~~~ 72 (240)
...+.+||++|..|++|++.
T Consensus 36 ~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 36 WLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp TTHHHHHTTTTCHHHHHHHH
T ss_pred HHHhhhcCCCCccHHHHHHH
Confidence 34447999999999999886
No 60
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=21.46 E-value=72 Score=30.91 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=46.5
Q ss_pred HHHHHHhhhc-cCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEEEEecCCCcChH
Q 026316 21 LNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAI 99 (240)
Q Consensus 21 Ire~l~k~~~-~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~~v~~p~~~a~ 99 (240)
-.++|.+... ++|+.+ |.-.++.-+|.+++.+|+.++|+.|..++++.+ ..+. . ...+..|.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~---~----~~~~~~p~~~~~ 146 (640)
T 2xr1_A 80 SISIIEEVVPKESVISS--YYFDPDSGEVIIEAEKPGLVIGKHGATLREITK----QIGW---I----PKVVRTPPIKSR 146 (640)
T ss_dssp HHHHHHHHSCGGGCEEE--EEECTTTSEEEEEESSHHHHHCSSSHHHHHHHH----HHCS---E----EEEEECCSSCCH
T ss_pred HHHHHHHhCCCccCccc--eeecCCCceEEEEeCCCCcccccchhhHHHHHh----ccCc---c----cccccCCCcchh
Confidence 5556655553 578865 555677889999999999999999876655444 3332 1 222336666655
Q ss_pred HHHHHHHH
Q 026316 100 AQAESLRY 107 (240)
Q Consensus 100 ~iA~~ia~ 107 (240)
.++.-.+.
T Consensus 147 ~~~~i~~~ 154 (640)
T 2xr1_A 147 TVKNIREF 154 (640)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 61
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=21.15 E-value=1.7e+02 Score=24.16 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=38.2
Q ss_pred hhccCCeeeeEEEEcCCeEEEEEEecccceeecCCcccHHHHHHHHHHHhCCCCCeeEEEEE
Q 026316 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (240)
Q Consensus 28 ~~~~agis~IeI~rt~~~i~I~I~~~rP~~iIG~~g~~i~~l~~~L~k~~~~~~~~v~I~v~ 89 (240)
.+...||. ..++.++|-+.+|.+ +..+.++++.|.+.++.+..+|+|...
T Consensus 89 ~v~~~G~~-------i~NvD~tii~q~PKl-----~p~~~~m~~~la~~L~~~~~~V~vKAt 138 (162)
T 3re3_A 89 MLDKKQYS-------ISNIDCTIIAQAPKM-----LPHIEKMRACLANILEIQISQINIKAT 138 (162)
T ss_dssp HHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 44566765 235677889999987 778999999999999987667776553
Done!